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J Biol Chem, Vol. 275, Issue 7, 4810-4815, February 18, 2000
From the Hemoglobins are best known as oxygen transport
proteins. Here we describe a hemoglobin from the parasitic nematode
Mermis nigrescens (Mn-GLB-E) that has an
optical, light shadowing function. The protein accumulates to high
concentration as intracellular crystals in the ocellus of mature
phototactic adult females while also being expressed at low
concentration in other tissues. It differs in sequence and expression
pattern from Mn-GLB-B, a second Mermis globin.
It retains the structure and oxygen-binding and light-absorbing
properties typical of nematode hemoglobins. As such, recruitment to a
shadowing role in the eye appears to have occurred by changes in
expression without modification of biochemistry. Both globins are coded
by genes interrupted by two introns at the conserved positions B12.2
and G7.0, which is in agreement with the 3exon/2intron pattern model of
globin gene evolution.
It has become evident that heme-based oxygen carriers
(hemoglobins) are widespread even in the lower phyla. Hemoglobins
(Hbs)1 and Hb-like proteins
have been characterized in an ever extending list of invertebrates,
plants, fungi, protozoa, and bacteria. Comparisons across this protein
family have revealed unexpected diversity in function and structure
(1-6). Despite the great variability in primary and quaternary
structure of their Hbs, the globin domains of phylogenetically widely
diverged species all display the "globin fold" (5, 7). The evidence
strongly supports the hypothesis that globins arose from a common
ancestor long before the advent of atmospheric oxygen (1, 8).
During evolution, the globin domain evolved to assist the reversible
binding to heme of small gaseous ligands (O2, CO,
H2S, and NO) resulting in biological functions as diverse
as O2 storage, transportation, and scavenging, as well as
transportation and accumulation of NO and H2S (2, 5, 6, 9).
These functions generally require large amounts of Hb. High molecular
weight Hb complexes likely evolved to avoid excretion of Hb that is
present in the body fluids as a solute (10). A different solution to this problem was the packaging of highly concentrated Hb in specialized cells, e.g. erythrocytes. Alternatively, smaller amounts of
myoglobin-like proteins are present in virtually all cells, perhaps
providing an efficient intracellular oxygen delivery system to the
respiring mitochondria and chloroplasts (4, 11, 12).
Oxygen-binding hemoproteins may also accept electrons from suitable
donors that reduce the bound dioxygen or the heme iron. These are found
particularly in unicellular systems, notably bacteria in which the
electron transport system and the O2 carrying hemoproteins are not contained within separate compartments. The flavohemoglobins of
Escherichia coli, Alcaligenes euthropus, and
Saccharomyces cerevisiae catalyze redox reactions, with the
heme playing a direct role in electron transfer much as in cytochromes
(13-16). The dioxygenase activity of the E. coli
flavohemoglobin that was recently described (17) also falls into this
category. Hb-associated iron atoms or unknown proteins potentially
assist electron transfer (18-21). Hemoglobins function as a terminal
oxidase in Vitreoscilla (22) and A. euthropus
(15) and play a central role in protection against oxidative stress in
S. cerevisiae (23) and detoxification of NO in E. coli (17, 24).
Mermis nigrescens is a nematode parasite of grasshoppers and
other Orthopteran insects (25, 26). From eggs ingested by the host,
larvae grow to the 10-cm adult length coiled inside the body cavity.
The L4-stage larvae break out of the host and burrow into the soil
where the final molt takes place and the adult nematode matures. The
gravid adult females emerge 1-2 years later from the soil and exhibit
a positive phototaxis during the search for suitable egg-laying sites
in grass (27-29). During maturation in the soil, the ocellus becomes
pigmented with Hb (29-33). We here describe the structure, function
and expression of a Hb used in an optical function in the ocellus of
the nematode M. nigrescens.
Collection and Cultivation--
Egg-laying adult females were
collected from vegetation in Vancouver, Canada and stored at about
8 °C in moist autoclaved soil. The desert locust host
Schistocerca gregaria was infected by feeding a counted
number of eggs, and the female fourth stage (L4) larvae were collected
as they emerged 4-5 weeks later. Larvae were investigated 1-2 days
after emergence. Immature adult females were investigated 2-3 months
post emergence before visible amounts of eye Hb had developed. The
mature adults, which had densely colored ocelli, were either field
collected or cultivated for at least 10 months post emergence.
Microscopy--
Anterior pieces containing the ocellus were
fixed 16 h in 3% glutaraldehyde, 0.5 M phosphate
buffer at pH 7.2. After washing 2 h in buffer, fixing 3 h in
2% OsO4, and washing 2 h in buffer, the pieces were
dehydrated in an ethanol series to propylene oxide and embedded in
Epon. Sections approximately 60 nm thick were mounted on Formvar-coated
grids and stained for 25 min with uranyl acetate and for 6 min with
lead citrate. A Phillips EM300G electron microscope was used with a
eucentric tilting apparatus. Light micrographs were obtained under
either bright field or laterally incident illumination.
Behavioral Experiments--
Arena and test conditions were
similar to those described previously (27-29). After acclimation to
21 °C and light, the motion of individual worms crawling on
moistened black felt was recorded under far-red and near-infrared light
(630-990 nm) with a CCD video camera (Cohu model 4915) and VCR. The
test stimulus was a horizontal monochromatic (420 nm) beam at 1.33 × 1013 photons s
An active worm was placed in the arena, and the test stimulus was
provided in the following sequence: 30 min at 420 nm, 5 min of
darkness, 30 min at 420 nm, and 60 min of dark control period. During
playback, the angular orientation of the "neck" (the 3 mm behind
the 2-mm "head") was measured every 30 s during light or dark
periods except for an initial 4-min recovery interval. For hypothesis
testing, mean vectors of neck orientations were calculated for each
worm. A mean vector is 1/n times the vector sum of unit
vectors pointing in the sampled directions. Treating the x
and y coordinates of the ends of the mean vector as samples from a bivariate normal population, Hotelling's one-sample test estimates the probability that the population of x and
y points has the origin 0.0 as its center. If this null
hypothesis can be rejected at p < 0.05, then one can
conclude worm necks are significantly oriented. The mean of mean
vectors indicates the average direction (34).
Protein Purification and Sequencing--
Hb was isolated from 75 egg-laying females. The anterior part was cut, and the Hb was leached
from 25 worms into 4 µl of distilled water (32). After
SDS-polyacrylamide gel electrophoresis and transfer to a polyvinylidene
difluoride membrane, a prominent band with Mr ~ 17,000 was selected for amino acid sequencing using an ABI 471-B
sequencer (35).
Derivation of Degenerate Oligonucleotides--
N-terminal
peptide sequence was used to design a sense strand degenerate primer
for PCR. MnG-d(AT) is designed to be an AT biased primer
(GTWAATTTAGATATWTTWMGIGC, a 23-mer with 64 redundancies).
Cloning of Mn-glb by RT-PCR--
The first 4 mm of the
Mermis head was dissected from 10 young adult females that
had faintly visible eye spots. Two headless bodies were also kept for
RNA isolation. Total RNA was made from the heads and bodies by (i)
grinding the nematode sections in a sterile mortar under liquid
nitrogen and (ii) extracting using the Ultraspec RNA isolation system
(Biotecx) according to the manufacturer's instructions.
Oligo(dT)-primed cDNA was generated using the GeneAmp kit
(Perkin-Elmer). Head and body cDNAs and the degenerate primer were
used in two separate reactions with an anchored oligo(dT) primer
DGDT(GCGCGGATCCGCTTTTTTTTTTTTTTTTTT) to generate PCR
fragments for cloning and sequencing. The amplified products were
cloned into the pMOS t-vector (Amersham Pharmacia Biotech) according to
the manufacturer's instructions. Recombinant plasmids were sequenced
using vector-derived primers and the ABI 377 sequencer. To determine
the globin cDNA sequence, three separate cloned cDNAs were
sequenced from the sense and antisense strands, and a consensus was generated.
Cloning of Mn-glb-e by RT-PCR--
Two primers were designed
based on the difference between the Mn-glb cDNA sequence
and the amino acid sequence information obtained by Edman degradation
of eye Hb. MerF1A (GTTGGCCAAATTGCCCATCAACGAGA) is a primer that matches
the Mn-glb cDNA sequence completely. MerF1T
(GTTGGCCAAATTGCCCATCAACGAGT) is a primer that matches the "body
isoform" cDNA except for the very last base, which changes the
codon to one encoding Phe instead of Ile. Both primers were high
pressure liquid chromatography-purified and were used together with the
oligo(dT) primer in a RT-PCR with RNA from both head and body. Positive
fragments were cloned and sequenced as described earlier.
The 5' end of the Mn-glb-e cDNA was isolated using rapid
amplification of cDNA Ends (Life Technologies, Inc.). In this
procedure, first strand cDNA was synthesized using the specific
primer MerR2UTR (GGAATAAGACGACGAACCATTCCC). A poly(C) tail was added to
the 3' end of the cDNA with terminal deoxytransferase. PCR was then
carried out using an oligo(dG) adaptor and the specific primer MerR1INT (GGGCACCTCCTCCGGCTTGATTGC). Positive fragments were cloned and sequenced.
Sequencing the Genes Mn-glb-e and Mn-glb-b--
The gene for the
eye globin was amplified using the specific primers MereyeF
(CAGTACTTGTGGTTCTGGCGGT) and MerR2UTR. The gene of the body globin was
amplified using the specific primers MnG-S5 (ATGGTGGTGAATTTGGACATT) and
MnG-E6 (TCACCAGCCTCCGATGTACTTC). The gene fragments were subsequently
purified, cloned, and sequenced.
Analysis of Sequences--
Nucleic acid sequences were analyzed
using MacVectorTM 6.0.1. (Oxford Molecular Ltd.) and
AssemblyLIGNTM 1.0.7. (Eastman Kodak Company). Data base
searches for amino acid sequence similarities were performed using the
BLAST server (36) to search a collection of data bases including
GenBankTM and dbEST. The Mermis globin sequence
was aligned to other globins. The alignment was used to derive
phylogenetic trees using neighbor joining as implemented in the TREECON
program (37). Support for trees was assessed using the bootstrap
procedure (1000 replicates).
Analysis of Transcription of Mn-glb-b and glb-e by
RT-PCR--
Multiplex reactions were performed in which either
Mn-glb-b or Mn-glb-e was co-amplified with a
fragment of the M. nigrescens ribosomal protein gene L6
(Mn rpl-6), which was sequenced by chance from the nonglobin
clones isolated from the original degenerate PCR reactions. The
following primers were used in the multiplex reactions: (i) for
amplification of Mn rpl-6, MnR-1F (CTGTACTGATCGTATTAGTTG) and MnR-2R (GATCGCACCTATGATCATGCCATC); (ii) for amplification of
Mn-glb-b, MnG-S6 (AGGGAATTCCATATGGTCGTCAATTTGGACATTA) and
MnG-E7 (CGCGGATCCGCGTCACCAGCCTCCGATGTACTTC); and (iii) for
amplification of Mn-glb-e, MereyeF and MerR2UTR. In addition
to analyzing the RT-PCR results by agarose gel electrophoresis, the
specificity of the PCR reactions was confirmed by digesting the PCR
products with Sau3AI to distinguish Mn-glb-b
products from Mn-glb-e products.
The anterior of adult gravid females of M. nigrescens
contains a strongly pigmented region forming a hollow cylinder (Fig. 1, A and B). The
cylindrical conformation of the ocellus is due to deposition of pigment
in the hypodermal cells of the region, swelling the hypodermal chords
to envelop the body cavity (Fig. 1B). In transmission
electron micrographs of thin sectioned worms, the cells are seen to be
densely packed with needle-like crystals having a hexagonal symmetry in
cross-section (Fig. 1C). In longitudinal sections, parallel
stripes disappear and reappear at 60° intervals as a section is
tilted. The patterns and dimensions are consistent with parallel rows
of protein molecules forming hexagonal tubes with shared walls.
Microspectrophotometry through the ocellus in fresh worm heads reveals
an absorption spectrum and dichroic spectrum typical of
HbO2 and its crystals (33). Thus both the eye pigmentation and crystals are shown to consist of oxyHb. There was no detectable Hb
in neighboring tissues. The heme concentration in the ~0.5 nl volume
of the pigmented region is ~10 mM, nearly that of Hb in
vertebrate erythrocytes (32, 33).
In other nematode ocelli, melanin plays a shadowing role. A sensory
nerve ending lies anterior to a melanin pigment spot or shallow pigment
cup (38-40) where it would be shadowed when the head is pointed away
from a light source (41). This provides an orientation signal for
negative phototaxis (40). The oxyHb in the ocellus of Mermis
females appears to have a similar role, but its arrangement results in
positive rather than negative phototaxis (27-29). We have investigated
the role of Hb further, taking advantage of a period during development
before the oxyHb pigmentation appears. From videotaped images recorded
under infrared illumination, we measured the neck orientations of three
ages of female in the presence of a 420 nm test source at 1.33 × 1013 photons s Have there been any structural modifications related to this optical function? How is this Hb related to the rest of the globin family? To answer these questions, we isolated and characterized the Hb cDNA and gDNA. Hb was leached from cut anterior tips of nematodes, separated on
SDS-polyacrylamide gel electrophoresis, and transferred to a
polyvinylidene difluoride membrane. A prominent band,
Mr ~17,000, was sequenced resulting in 33 N-terminal amino acid residues of the eye globin (Mn-GLB-E;
Fig. 3). MnG-d(AT), a degenerate forward primer based on this sequence, and oligo(dT) were used in RT-PCR reactions using total cDNA from head as template. The amplified fragment differed by three predicted residues from the N-terminal sequence obtained from protein sequencing, suggesting the presence of a
second globin isoform, which we designate Mn-GLB-B. Primers designed to distinguish between the different codons at residue 19 (for
Phe or Ile; Fig. 3) were used in conjunction with an anchored oligo(dT)
reverse primer to separately amplify and clone fragments of the
Mn-GLB-E and Mn-GLB-B isoforms. Complete cDNA
sequences were obtained using 5'-rapid amplification of cDNA ends.
The predicted amino acid sequences of Mn-GLB-E and
Mn-GLB-B are aligned with selected globins in Fig. 3.
Both cDNAs encode proteins of 146 amino acid residues with sequences typical of globins. An unambiguous alignment of the Mermis sequences with globins of known structure shows: (i) the correct location of Phe(CD1) and His(F8), the two absolutely conserved residues of globins, (ii) the correct alignment of Pro(C2), which determines the folding of the BC corner, and of Gly(B6) and Gly(E8), which position the cross-over of the B and E helices, (iii) congruence with the six conserved secondary structural motifs of the globin fold, and (iv) acceptable substitutions at buried and surface sites that are known to have restricted polarity and volume in vertebrate and nonvertebrate globins (7, 8, 42). In addition, residues characteristic of nematode globins are conserved, notably Tyr(B10), and Gln(E7). These residues project into the distal heme pocket, where oxygen is bound and replace the Leu and His found in the majority of globins. They are usually associated with a high oxygen affinity because of a low rate constant for dissociation of the ligand (43-45). For Ascaris suum pseudocoelomic Hb it is shown that the exceptionally high oxygen affinity is due to an H bonding network that includes residues Tyr(B10), Gln(E7), and bound oxygen (46). The same residues in the Mermis globins may account for the relatively high oxygen affinity observed for eye Hb (33). The presence of a ligand stabilizes Hb against oxidation of the heme and denaturation and loss of absorbance in the visible region. The high oxygen affinity of eye Hb may ensure the retention of the high absorbance necessary for its shadowing function. Mn-GLB-E and Mn-GLB-B are 84% identical, indicating their origin in a relatively recent duplication event. A Cys in eye globin at the exposed position E1 could be available for an intermolecular disulphide bond. The other substitutions between the two sequences have no obvious structural or functional consequences. Sequence comparisons suggest that the Mermis globins are
distantly related to the other nematode globins sequenced to date (Fig.
4 and Refs. 43, 47, and
48).2 This is consistent with
a phylogeny based on small subunit ribosomal RNA sequence comparisons
(50).
With exception of the human HbC variant ( The genes encoding each globin were sequenced. Comparison of the genomic and cDNA sequences shows the interruption of both genes by two introns at the conserved positions B12.2 and G7.0 (Ref. 55 and Fig. 4). However, neither gene has a "central" intron, an intron found at various locations in the E helix of many nematodes, plants, and other nonvertebrates, along with introns at the invariant sites B12.2 and G7.0 (12, 47, 48, 56-62). Vertebrates and the trematode Paramphistomum epiclitum3 also contain only the B12.2 and G7.0 introns. One parsimonious explanation of these observations is that the ancestral globin gene had only the two introns at B12.2 and G7.0, and the central introns at various sites arose later by insertion events (48, 61, 64),2 which is in keeping with their being inserted at different locations (e.g. E8.1 and E3.2 in nematodes). In this model both B and G introns were lost from the Mb gene in an ancestor to the rhabditids (Caenorhabditis elegans and C. remanei). Intron losses likely occurred independently during the evolution of the A. suum Mb gene as the phylogenetically younger strongylid (Nippostrongylus brasiliensis Mb) retains a three-intron pattern. There is little doubt that both E and G introns were secondarily lost from the second domain of the gene encoding Pseudoterranova decipiens Hb (Fig. 4). It should be stressed that this two-intron hypothesis differs from an earlier proposal that a three-intron globin gene was ancestral (3, 8, 57, 65-67). Neither globin message contains a secretory leader sequence, evidence that both expressed proteins are intracellular. This is in keeping with light and electron microscopic observations of hemoglobin color or crystals only in the cytoplasm of eye hypodermal cells (Fig. 1 and Refs. 30 and 31). Both messages are expressed in tissues outside the ocellus along the entire length of egg-laying adult females, in the ocellus-lacking L4 larvae (Table I) and adult males (data not shown). Several tissues run the length of the body, including muscle, hypodermis, neurons, and the trophosome (food storage body; Fig. 1A). Hemoglobin has been located histochemically in a section posterior to the ocellus, in a hypodermal chord cell extending between the cuticle and the trophosome where it could have an oxygen-bearing role (68).
The two Mermis genes are expressed at different times during development (Table I). The time of relatively high level of expression of Mn-glb-b correlates with the L4 to adult molt. In contrast, expression of Mn-glb-e at higher-levels begins 35 days post emergence, 2-3 months prior to the appearance of faint color in the eye. Visible pigment continues to accumulate gradually over at least the next 8 months to the high concentration seen in egg-laying females collected in the field. Higher levels of Mn-glb-e message are detected in the anterior third of maturing adult females (Table I). Both Mermis globins may be protected by the presence of N-terminal Val, known to be stabilizing against ubiquitin-mediated N-end rule degradation (69, 70). Also, eye globin could be protected from degradation by its crystallization. Why was Hb recruited for a shadowing role rather than the melanin found in other nematode ocelli? Evolution often makes use of whatever is available. It is likely that a cylindrical pigmentation was needed to provide positive rather than negative phototaxis, and this could be provided by the Hb normally expressed in the cylindrically arrayed hypodermal cells. Recruitment appears to have occurred simply by changing gene regulation so that Hb accumulates in anterior hypodermal cells to amounts high enough to expand the hypodermal chords and cast a shadow. There is growing interest in proteins that have evolved to multiple functions (71). In the multiple evolution of eyes, recruitment of proteins for their physical properties has occurred repeatedly, and the physical phenotypes have required high concentrations. Crystallins at high concentration provide the refractive index and transparency of vertebrate lenses, whereas at low concentration in other tissues their original function as stress proteins or metabolic enzymes is preserved (72, 73). Recruitment of lens crystallins has occurred by changes in gene regulation, involving Pax-6, to provide eye-specific high level expression (74, 75). In another example, reduced cytochrome c is found at high concentration in the inner segment of cone photoreceptors in certain fishes. It probably acts, because of its high absorbance, as a short wavelength blocking filter to modify the spectral sensitivity of the photoreceptor (49, 63). M. nigrescens provides us with the first example of a Hb recruited for a physical property and ability to achieve a high concentration in eye cells. Several interesting questions remain to be answered. How is the high
level expression of eye globin regulated, and is a Mermis homologue of Pax-6 involved? In what other tissues is it expressed and
is an oxygen bearing function retained? What sequence modification has
occurred to stabilize its naturally crystalline state?
We appreciate the help of Ann Rose with the electron microscopy, Parmjit Sidhu with the phototaxis experiments, Marie-Louise Van Hauwaert with the protein sequencing, Andy Vierstraete with DNA sequencing, and Elizabeth Carefoot and Greg Ehlers with the graphics.
* This work was supported by a NATO International Collaborative Grant (to A. H. J. B., M. B., L. M., and J. V.), a grant from the National Science and Engineering Research Council of Canada (to A. H. J. B.), and a grant from the Leverhulme Trust (to M. B. and P. H.). S. D. is a postdoc fellow of the Fund for Scientific Research Flanders (FWO).The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) AF138295, AF138291, AF138296, AF138297, AF138292, AF138293, AF138294, and AF140502.
** To whom correspondence should be addressed: Dept. of Biochemistry, University of Antwerp, Universiteitsplein 1, B-2610 Antwerp, Belgium. Tel.: 32-3-820-23-23; Fax: 32-3-820-22-48; E-mail: lmoens@uia.ua.ac.be.
2 P. Hunt, A. H. J. Burr, and M. L. Blaxter, unpublished observations.
3 S. Dewilde, B. Winnepenninckx, Y. Van de Peer, J. Vanfleteren, and L. Moens, unpublished observations.
The abbreviations used are: Hb(s), hemoglobin(s); PCR, polymerase chain reaction; RT, reverse transcription.
Copyright © 2000 by The American Society for Biochemistry and Molecular Biology, Inc. This article has been cited by other articles:
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