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Originally published In Press as doi:10.1074/jbc.M103893200 on May 30, 2001

J. Biol. Chem., Vol. 276, Issue 31, 28933-28938, August 3, 2001
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Inhibition of LZIP-mediated Transcription through Direct Interaction with a Novel Host Cell Factor-like Protein*

Hai-Jun ZhouDagger , Chi-Ming Wong§, Jian-He ChenDagger , Bo-Qin QiangDagger , Jian-Gang YuanDagger , and Dong-Yan Jin§||

From the Dagger  National Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, and Peking Union Medical College, Chinese National Human Genome Center, Beijing 100005, China and the § Institute of Molecular Biology, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China

Received for publication, May 1, 2001

    ABSTRACT
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Host cell factor 1 (HCF-1) is a cellular transcriptional coactivator which coordinates the assembly of enhancer complex through direct interactions with viral and cellular trans-activators such as VP16, Oct-1, LZIP, and GA-binding protein. These interactions are mediated by the beta -propeller domain comprising the first 380 residues of HCF-1 with six kelch repeats. Here we describe the identification and characterization of a novel HCF-like kelch repeat protein, designated HCLP-1. HCLP-1 is a ubiquitously expressed nuclear protein which is composed almost entirely of a six-bladed beta -propeller. HCLP-1 selectively interacts with LZIP but not with VP16. The physical interaction between HCLP-1 and LZIP leads to the repression of the LZIP-dependent transcription. The HCLP-1-binding domain of LZIP maps to residues 109-315, which contain the bZIP DNA-binding motif. Electrophoretic mobility shift assay demonstrates that HCLP-1 indeed interferes with the binding of LZIP to its DNA target. Thus, HCLP-1 serves a transcriptional co-repressor function mediated through its inhibitory interaction with the LZIP transcription factor. Our findings suggest a new mechanism for transcriptional regulation by HCF-like proteins.

    INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Transcriptional regulation in eukaryotes involves a complicated interplay between activators, repressors, basal transcription factors, and chromatin (1). To coordinate the orderly assembly of multicomponent enhancer complexes onto DNA targets, cells have evolved specialized groups of regulators that interact with multiple transcription factors. Host cell factor 1 (HCF-1)1 represents one of these multipartner transcriptional regulators and it functions as a coordinator in the assembly of enhanceosome on viral and cellular DNAs (2-5).

HCF-1 was first identified through its association with herpes simplex virus transactivator VP16, a key regulator of lytic infection (6, 7). The formation of the VP16-HCF-1 complex facilitates the nuclear accumulation of VP16 (8) and the recruitment of the POU-homeodomain transcription factor Oct-1 (9), leading to activation of viral immediate early genes. In addition to VP16 and Oct-1, HCF-1 also directly interacts with GA-binding protein, another cellular transcription factor critically involved in the regulation of immediate early gene expression (4). One notable mechanism for the regulation of HCF-1 activity is through subcellular localization. Thus, HCF-1 is ambiently found in sensory neurons and nuclear translocation leads to reactivation of the virus from latency (10).

HCF-1 is expressed as a 230-kDa precursor, which is autocatalytically cleaved into an array of tightly associated polypeptides ranging from 50 to 150 kDa (4, 6, 11-14). The interaction of HCF-1 with VP16 is mediated by the first 380 residues of HCF-1 (2, 15). This N-terminal domain, which consists of six kelch repeats, sufficiently stabilizes VP16-induced complex with Oct-1 and activates transcription (8, 15). In addition, this domain has an essential role in cell proliferation (16). The kelch repeats represent an evolutionarily conserved module for protein-protein interaction and they form a tertiary structure called beta -propeller, which has been found in many different polypeptide contexts (17). In HCF-1, gross alterations in the six-bladed beta -propeller structure disrupt both the VP16-binding and the cell-cycle progression activities (9, 15, 16).

One additional cellular target of the beta -propeller domain of HCF-1 is a bZIP transcription factor known as LZIP or Luman (18, 19). LZIP is the human ortholog of the fruit fly BBF2/dCREB-A protein, which has been shown to activate Drosophila fat body- and mammalian liver-specific transcription (20, 21). The subportion of LZIP that contains its bZIP domain is highly homologous to counterparts in other members of the bZIP family of transcription factors including CREB, CREM, and ATF6 (18, 19, 22). LZIP binds to a canonical cAMP-responsive element (CRE) and activates CRE-dependent transcription (19, 22-24). While the cellular targets of LZIP are poorly understood, LZIP has been implicated in cell proliferation and it acts as a binding partner and transforming cofactor of the hepatitis C virus core protein, a viral protein with oncogenic potential (24). HCF-1 recognizes a tetrapeptide HCF-binding motif (HBM) shared by LZIP, VP16, and another HCF-1 partner termed Zhangfei (18, 23, 25). However, VP16 and LZIP show drastically different sensitivities to individual HCF-1 point mutants, suggesting that other structural motifs in the beta -propeller may also contribute to the specificity of the binding (9). HCF-1 functions as a coactivator in the context of LZIP, and the physical interaction with HCF-1 is necessary for coordinated assembly of enhanceosome and optimal transcriptional activation by LZIP (5).

A second human HCF-like protein termed HCF-2 has also been identified (26). Although HCF-1 and HCF-2 share extensive sequence homologies (~65% identical residues) throughout the beta -propeller and self-association domains, HCF-2 is bound poorly by VP16 and LZIP, indicating the fine specificity of transcriptional control. Experiments with HCF-1 and HCF-2 chimeras have localized determinants for this selectivity to the fifth and sixth blades of the beta -propeller (26). Interestingly, a Caenorhabditis elegans HCF, which is structurally similar to human HCF-2 and is more distantly related to human HCF-1, conserves the abilities to stabilize the VP16-induced enhancer complex and to promote cell proliferation (27).

In this study, we describe the identification of a novel ubiquitously expressed human HCF-like protein, designated HCLP-1. HCLP-1 is smaller in size than both HCF-1 and HCF-2, and it consists almost entirely of one beta -propeller domain. In contrast to HCF-1 and HCF-2, HCLP-1 associates with LZIP but not with VP16. More importantly, the interaction with HCLP-1 leads to inhibition rather than activation of the LZIP-mediated transcription. Mechanistically, HCLP-1 modulates the CRE binding activity of LZIP by targeting residues 109-315, which contain the bZIP domain. Our findings suggest that HCLP-1 is a specific transcriptional corepressor for LZIP.

    EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Plasmid Construction-- Plasmid pBDHCLP-1 expressing Gal4 DNA-binding domain (BD)-HCLP-1 was constructed by in-frame insertion into plasmid pAS2-1 (CLONTECH) of a cDNA (GenBankTM AF113131) encoding the full-length 406 amino acids of HCLP-1. Gal4BD-HCLPN and Gal4BD-HCLPC express truncated Gal4BD-HCLP-1 corresponding to amino acids 1-331 and 298-406, respectively. pADLZIP was obtained by cloning the complete LZIP coding sequence into Gal4 activation domain (AD) plasmid pGADGH (CLONTECH). pADCREB, pADATF4, pADATF6, pADcFOS, pADcJUN, and pADCEBP contain the complete coding regions of human CREB, ATF4, ATF6, c-Fos, c-Jun, and CEBP-alpha , respectively. The ATF6 (28) and CEBP-alpha (29) cDNAs were kindly provided by Dr. Ron Prywes and Dr. Gretchen Darlington, respectively.

pBD-HCFN380 expresses the wild-type version of the HCF-1 beta -propeller domain (residues 1-380) fused to Gal4BD (a gift from Dr. Tom Kristie). pADVP16 contains the full-length VP16 derived from herpes simplex virus type 1 (kindly provided by Dr. Gary Hayward). pM (CLONTECH), pGalLZ, and pGalVP16 are SV40 promoter-driven vectors expressing Gal4BD, Gal4BD-LZIP, and Gal4BD-VP16AD, respectively. pLZm4VP16 is derived from pVP16 (CLONTECH) by inserting sequences coding for residues 109-315 of LZIP. Prokaryotic expression vectors pGSTHCLP-1 and pET32aHisLZ for glutathione S-transferase (GST)-HCLP-1 and polyhistine-tagged thioredoxin (TRX)-LZIP were derived from pGEX-4T-1 (Amersham Pharmacia Biotech) and pET32a+ (Novagen). pcHCLP-1 and pcLZ were constructed by in-frame insertion of the full-length HCLP-1 and LZIP, respectively, into plasmid pcDNA3.1/V5/HisB (Invitrogen). pGal-LUC (a gift from Dr. Karen Kibler) is a luciferase reporter plasmid derived from pGL3-basic (Promega). pCRE-LUC was from Stratagene.

Northern Blotting-- Northern blot analysis was performed with a 32P-labeled 1005-base pair random-primed fragment generated by polymerase chain reaction amplification of HCLP-1 cDNA (corresponding to nucleotides 248-1252). Blots of poly(A)+ RNAs from human tissues and cancer cell lines were probed as recommended by CLONTECH.

Yeast Two-hybrid Analysis-- Gal4-based yeast two-hybrid assays were performed in strain SFY526 as previously described (30, 31).

Western Blotting and Immunofluorescence Microscopy-- Western blot analysis and confocal laser-scanning immunofluorescence microscopy were carried out as detailed elsewhere (31, 32).

Cell Transfection and Luciferase Assays-- HeLa cells in 12-well plates were transfected using 3 µl of LipofectAMINE 2000TM (Life Technologies) per well. Cell extracts were prepared in a commercial lysis buffer (Promega). Luciferase reporter assays were performed according to the manufacturer's instructions (Promega) and luciferase activity was measured with a LB9507 luminometer (EG&G).

Protein Affinity Binding-- Recombinant proteins GST, GST-HCLP-1, His-taged TRX, and His-tagged TRX-LZIP were expressed from Escherichia coli and purified as per the manufacturers' protocols (Amersham Pharmacia Biotech and Novagen). Equal amounts of TRX and TRX-LZIP were loaded onto either GST- or GST-HCLP-1-bound glutathione-Sepharose (Amersham Pharmacia Biotech). The resins were washed with three changes of 1 × phosphate-buffered saline. Bound proteins were solubilized in SDS-gel loading buffer (50 mM Tris-HCl, pH 6.8, 100 mM dithiothreitol, 2% SDS, 0.001% bromphenol blue, and 10% glycerol).

Gel Mobility Shift Assay-- Probe labeling and gel mobility shift assays were performed as previously described (30, 32, 33). Oligonucleotides used to produce the CRE motif are 5'-AGCTT GGTGACGCGGATCCGGTGACGCA-3' and 5'-AGCTTGCGTCACCGGATCCGCGTCACCA-3'.

    RESULTS
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Identification of HCLP-1 as a Novel HCF-like Protein-- To mine for novel human kelch repeat proteins related to HCF, we searched the current nucleotide data bases via the tblastn server (www.ncbi.nlm.nih.gov) for expressed sequence tags homologous to the coding sequences of the beta -propeller domain of HCF-1. Further analysis of the HCF-1-related sequences identified from this search revealed that a group of human expressed sequence tags including AA488367, AA167356, and AW992905 encode a single non-HCF-1 and non-HCF-2 kelch repeat protein. A fetal brain cDNA library was then screened for clones that match the above ESTs and a full-length human cDNA for a novel HCF-like protein designated HCLP-1 was obtained.

HCLP-1 is a 406-amino acid protein composed almost entirely of six internally repeated sequences of 45~71 residues (Fig. 1A). These kelch repeats are expected to form four-stranded, anti-parallel beta -sheets that fold into propeller-like barrel structures (17). Thus, the whole HCLP-1 molecule will form a six-bladed beta -propeller. A kelch repeat is characterized by a pair of glycines immediately preceded by four hydrophobic residues and followed by a tryptophan (17). In HCLP-1, phenylalanine is found at position -1 relative to the glycine pair in five of the six repeats, and valine or leucine is present at position -2. However, the third and the sixth kelch repeats of HCLP-1 are relatively long. HCLP-1 shares significant homology with the HCF-1 and HCF-2 kelch domains (Fig. 1B).


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Fig. 1.   HCLP-1 is a novel HCF-like protein. A, alignment of kelch repeats in HCLP-1. Conserved residues are shaded. B, alignment of HCLP-1 with corresponding sequences in HCF-1 (SWISS-PROT accession number p51610) and HCF-2 (GenBankTM identification number 7019405). Compatible residues are highlighted by shading. HCLP-1 shares ~30% identical and 45% similar amino acid residues with HCF-1 and/or HCF-2.

To determine the expression patterns of HCLP-1 mRNA, we analyzed poly(A)+ RNA from various human tissues and cancer cell lines for the presence of transcripts that hybridize to an HCLP-1 cDNA probe. HCLP-1-specific transcripts of ~2 kilobases and/or 1.8 kilobases in size were detected in all tested human tissues and cancer cell lines (Fig. 2). Thus, HCLP-1 is a novel and ubiquitously expressed beta -propeller protein related to HCF-1 and HCF-2.


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Fig. 2.   Expression of HCLP-1 mRNA in human tissues and cells. The 32P-labeled HCLP-1 cDNA probe was hybridized to poly(A)+ RNA from human tissues (panel A) and cancer cell lines (panel B). The same blots were stripped and hybridized subsequently with the beta -actin probe (bottom).

HCLP-1 Associates with LZIP but Not with VP16-- HCF-1 has been shown to associate with VP16 (6, 7) and LZIP (18, 19). These interactions are mediated by the beta -propeller domain of HCF-1 and a tetrapeptide HBM motif present in both VP16 and LZIP (18, 23). Studies with point mutants suggest that VP16 might recognize HCF-1 and HCF-2 through similar mechanisms, albeit the interaction with HCF-2 is weaker (26). Because HCLP-1 forms a structurally related beta -propeller, we asked whether HCLP-1 would also interact with LZIP and/or VP16.

We addressed this issue by using a Gal4-based yeast two-hybrid assay (Fig. 3A). In this experiment, we used two irrelevant pairs of proteins (columns 1 and 6) as positive controls. As previously described, the Tax oncoprotein of human T-cell leukemia virus type 1 can self-associate (30). Therefore, Tax fused to Gal4BD interacts potently with Tax fused to Gal4AD (Fig. 3A, column 1). Likewise, Tax binds to a cellular partner called Int-6 (34), albeit with lower affinity (column 6). Next we verified that the beta -propeller domain of HCF-1 is able to interact with both LZIP and VP16 (columns 2 and 3). In contrast, HCLP-1 can associate only with LZIP (compare column 4 to column 7), but not with VP16 (compare column 5 to column 7). Hence, HCLP-1 can discriminate between LZIP and VP16.


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Fig. 3.   Interaction of HCLP-1 with LZIP. A, yeast two-hybrid assay. The indicated Gal4BD and Gal4AD fusion pairs were assayed for beta -galactosidase activity in the yeast strain SFY526. Relative beta -galactosidase activity was expressed as arbitrary units. pGAD424 is the expression vector for Gal4AD alone. B, LZIP binds to immobilized GST-HCLP-1 but not to GST. Equal amounts of bacterially expressed TRX and TRX-LZIP proteins were loaded onto glutathione-Sepharose preincubated with 2 µg of GST or 2 µg of GST-HCLP-1. The resins were washed three times with phosphate-buffered saline. Bound proteins were solubilized in SDS gel loading buffer, resolved by 12% SDS-PAGE, transferred to polyvinylidene difluoride membrane, and probed with an anti-His tag monoclonal antibody from CLONTECH (lanes 1-3). GST and GST-HCLP-1 were stained with Coomassie Blue (lanes 4 and 5). C, nuclear localization of HCLP-1 and LZIP in HeLa cells. Exponentially growing HeLa cells were fixed and stained with rabbit anti-HCLP serum alpha -HCN directed against the N-terminal 331 residues of HCLP-1 (panel 1), or with rabbit anti-LZIP antibody alpha -ZN (panel 2), or with alpha -HCN preincubated with 1 µg of His-tagged HCLP-1 (His-HCLP-1). The alpha -HCN and alpha -ZN antibodies were used, respectively, at 1:500 and 1:100 dilutions. Bar, 20 µm. Specificity of alpha -ZN has been verified elsewhere (24).

To define the specificity of the interaction between HCLP-1 and LZIP, we tested whether HCLP-1 could distinguish LZIP from other cellular bZIP transcription factors. Seven bZIP proteins fused to Gal4AD were queried in parallel for binding to Gal4BD-HCLP-1 (Fig. 3A, columns 4 and 8-13). Notably, HCLP-1 interacts with LZIP only but not with any of the other six bZIP factors, namely CREB, ATF4, ATF6, c-Jun, c-Fos, and CEBP-alpha . Thus, HCLP-1 is a specific partner of LZIP.

The observed interaction between HCLP-1 and LZIP in yeast cells does not exclude that it could be mediated through another yeast protein. To challenge this possibility, we performed in vitro pull-down assays with GST-HCLP-1 and His-tagged TRX-LZIP purified from E. coli. In agreement with a direct physical contact between HCLP-1 and LZIP, Fig. 3B verified that TRX-LZIP bound to GST-HCLP-1 (lanes 3 and 5; also compare lane 3 to lane 2), but not to GST alone (lanes 1 and 4).

In addition to the in vivo yeast two-hybrid analysis and in vitro protein affinity binding assays, confocal laser-scanning immunofluorescence microscopy was also performed to further probe the interaction between HCLP-1 and LZIP within human cells. We generated anti-HCLP-1 serum (alpha -HCN) directed against bacterially produced HCLP-1 protein containing the N-terminal 331 residues. The specificity of this antiserum was verified by immunofluorescent staining. HeLa cells were probed with alpha -HCN, or preimmune serum, or alpha -HCN neutralized with excess amount of purified His-tagged HCLP-1 protein (His-HCLP-1). HCLP-1-specific staining was found in the nucleus of interphase HeLa cells probed with alpha -HCN (Fig. 3C, panel 1), but not in cells stained with preimmune (data not shown) or neutralized (Fig. 3C, panel 3) sera. Because both alpha -HCN and the anti-LZIP antibody alpha -ZN were from rabbits, a direct co-localization of HCLP-1 and LZIP cannot be demonstrated with indirect immunofluorescence microscopy. However, when considered together with the previously documented (24) nuclear localization of LZIP (Fig. 3C, panel 2), our data indicate that endogenous HCLP-1 and LZIP proteins reside in the same intranuclear compartment within human cells, consistent with an intracellular protein-protein contact between the two entities.

We carried out additional yeast two-hybrid interactive assays to define the functional domains of LZIP and HCLP-1 (Fig. 4). Various truncated mutants of LZIP were constructed and their HCLP-1 binding activities were individually assessed. We observed that the mutant LZIP-M4 induced LacZ reporter expression as potently as the wild type LZIP (Fig. 4A). It is noteworthy that this mutant with amino acids 109-315 contains an intact bZIP region. By contrast, neither the LZIP-M2 mutant comprising amino acids 1-109 nor the LZIP-M5 mutant comprising amino acids 235-371 can interact with HCLP-1. One interpretation for these data is that the bZIP region (amino acids 152-220) is required for interaction with HCLP-1. We noted that mutants LZIP-M3 and LZIP-M4, both lacking the HBM motif, still interact with HCLP-1. These results implicate that the HBM region, which mediates the association between HCF1 and LZIP, might be dispensable for the interaction between HCLP-1 and LZIP.


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Fig. 4.   Mapping of functional domains in LZIP (A) and HCLP-1 (B). Schematic representation indicates the fragments of LZIP or HCLP-1. The truncated proteins were individually tested for binding to HCLP-1 or LZIP in the yeast two-hybrid interactive assay. Minus (-) and plus (++) indicate the relative levels of beta -galactosidase activity. HBM, bZIP, and the kelch repeats were highlighted.

On the other hand, we were unable to narrow down a minimal LZIP-binding domain in HCLP-1. Neither the N-terminal (amino acids 1-331) nor the C-terminal (amino acids 298-406) portion of HCLP-1 is sufficient to bind LZIP (Fig. 4B). Thus, the entire beta -propeller structure of HCLP-1 might be necessary for interaction with LZIP.

HCLP-1 Inhibits LZIP-dependent Transcription in Mammalian Cells-- Previously, we and others have shown that LZIP is a nuclear CRE-activating factor (19, 24). The finding that HCLP-1 interacts with LZIP predicts a functional impact of the former on the transcriptional activity of the latter. To explore this, we expressed epitope-tagged HCLP-1 protein in HeLa cells and assessed the effects of HCLP-1 on Gal4BD-LZIP activation of luciferase expression driven by Gal4-binding enhancer elements. The expression of HCLP-1 tagged with a V5 epitope was verified by Western blot analysis, and an ~50-kDa species recognized by the anti-V5 antibody was specifically detected from the pcHCLP-1-transfected cells (Fig. 5A, compare lane 2 with lane 1). When we increased the expression of HCLP-1, the Gal4BD-LZIP-dependent transcription of luciferase reporter decreased progressively (Fig. 5B; GAL4-LZIP, black-square). By sharp contrast, the reporter expression dependent on a Gal4BD version of VP16, which does not interact with HCLP-1 (see Fig. 3A for reference), was totally unaffected by HCLP-1 (Fig. 5B; GAL4-VP16, diamond ). These results correlate the protein-protein interaction with an inhibitory effect on transcription.


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Fig. 5.   HCLP-1 protein inhibits LZIP-dependent transcription. A, expression of HCLP-1 in HeLa cells. Cells were mock transfected (lane 1) or transfected with pcHCLP-1 (0.1 µg; lane 2). Western blotting was performed to verify expression of the V5-tagged HCLP-1. The mouse monoclonal anti-V5 antibody (Invitrogen) was used at 1:1000 dilution. B, effects of HCLP-1 expression on Gal4BD-LZIP transactivation. HeLa cells were transiently transfected with pGalLUC (0.1 µg) plus either the Gal4-VP16-expressing plasmid pGalVP16 (0.1 µg, diamond ) or the Gal4-LZIP-expressing plasmid pGalLZ (0.1 µg, black-square) plus the indicated amounts of pcHCLP-1. C, effects of HCLP-1 expression on LZIP activation of CRE. HeLa cells were transiently transfected with pCRELUC (0.1 µg) plus the indicated amounts of pcHCLP-1 plus 0.1 µg of empty vector (0.1 µg, black-diamond ) or expression plasmids for the indicated proteins (LZIP, ; LZM4-VP16, black-triangle). All values represent the means of three independent transfections, and error bars indicate S.D. from the mean.

To further characterize this inhibitory effect, the HCLP-1-expressing plasmid (pcHCLP-1) paired with either an LZIP-expressing plasmid or an empty vector was transfected into HeLa cells, and the activation of CRE-dependent reporter expression was assayed. Again, we observed that increased expression of HCLP-1 reproducibly repressed cell-endogenous (Fig. 5C; black-diamond ) and LZIP-stimulated (Fig. 5C; ) CRE-dependent luciferase activity. One interpretation of this experiment is that HCLP-1 protein physically binds endogenous LZIP in HeLa cells in a manner similar to its interaction with exogenously overexpressed LZIP, leading to repression of transcription. To assess whether the HCLP-1-binding domain of LZIP can confer HCLP-1 responsiveness to transcription factors which do not bind HCLP-1, we constructed a LZM4-VP16 chimera, which contains the HCLP-1-binding domain (amino acid 109-315) of LZIP and the activation domain of VP16. Interestingly, LZM4-VP16 also stimulated CRE-dependent activity and again was repressed by HCLP-1 in a dose-dependent manner (Fig. 5C, black-triangle). All of this supports the notion that the interaction between HCLP-1 and LZIP leads to the inhibition of LZIP-mediated transcription.

Above, we showed a direct interaction of HCLP-1 with LZIP (Fig. 4) and the functional consequence of this interaction (Fig. 5). One salient point of our findings is that the HCLP-1-binding domain in LZIP contains an intact bZIP DNA-binding region. This prompts us to ask whether HCLP-1 would inhibit the DNA binding activity of LZIP. We and others have shown that LZIP binds canonical CRE sites in vitro and in vivo (19, 24). We therefore assessed the influence of HCLP-1 on LZIP binding to CREs in an electrophoretic mobility shift assay (Fig. 6). Various combinations of recombinant proteins produced from E. coli were incubated with 32P-labeled CRE oligonucleotides and the protein-DNA complex was analyzed on a nondenaturing PAGE gel. An LZIP-specific retarded band (Fig. 6; highlighted by an arrow) was observed when TRX-LZIP was mixed with labeled probe containing CRE sites (Fig. 6, lane 2). When TRX was added, this band was not seen (Fig. 6, lane 1). The addition of a 50-fold excess of unlabeled CRE oligonucleotides depleted the activity to bind with the labeled probe (Fig. 6, lane 3), lending further support to the specificity of the band. This LZIP-specific signal diminished progressively when increased amounts of GST-HCLP-1 were added to the reaction (Fig. 6, lanes 7-9). The diminution was caused by HCLP-1 but not by GST, since the binding activity was unaffected by the addition of GST (Fig. 6, lanes 4-6). Notably, GST-HCLP-1 alone was unable to bind the CRE oligonucleotides (Fig. 6, lane 10). Thus, HCLP-1 inhibits LZIP-mediated transcription through the modulation of its DNA binding activity.


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Fig. 6.   HCLP-1 inhibits the DNA binding activity of LZIP. Reactions contain bacterially expressed TRX (2 µg, lane 1), TRX-LZIP (2 µg, lanes 2-9), GST-HCLP-1 (0.1 nmol, lane 10). Purified GST (0, 0.1 and 0.5 nmol, lanes 4-6) and GST-HCLP-1 (0, 0.1, and 0.5 nmol, lanes 7-9) were added individually to the reactions as indicated on the top of the gel. A 50-fold excess of unlabeled CRE oligonucleotides (lane 3) was used to compete for binding. Relative intensity of bands was quantitated with the help of a densitometer (Molecular Dynamics). Results are representative of three independent experiments. P, free probe.


    DISCUSSION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

Here we report on the identification and characterization of human HCLP-1, a novel and ubiquitously expressed beta -propeller protein related to HCF-1 and HCF-2 (Figs. 1 and 2). The direct interaction of HCLP-1 with the cellular transcription factor LZIP was demonstrated in two independent assays for protein-protein binding: yeast two-hybrid analysis (Fig. 3A) and in vitro affinity chromatography (Fig. 3B). Confocal immunofluorescence microscopy further supports that both proteins localize to the same intranuclear compartment (Fig. 3C). Interestingly, HCLP-1 interacts specifically with LZIP but not with herpes simplex virus VP16 (Fig. 3A). As a consequence of the direct interaction, HCLP-1 modulates the DNA binding activity of LZIP (Fig. 6), leading to transcriptional repression (Fig. 5). Several lines of evidence are consistent with the model that HCLP-1 inhibits LZIP-dependent transcription through interference with DNA binding. First, both LZIP and HCLP-1 localize predominantly to the nucleus (Fig. 3C). Second, the HCLP-1-interacting domain in LZIP coincides with the bZIP DNA-binding region (Fig. 4). Finally and most importantly, electrophoretic mobility shift assay demonstrates that HCLP-1 suppresses the binding of LZIP to CRE oligonucleotides in a dose-dependent manner (Fig. 6). Taken together, our findings point to a specific transcriptional corepressor function of HCLP-1 mediated through physical interaction with a cellular transactivator.

HCF-1 is a unique transcriptional coactivator which functions as a coordinator in the assembly of multicomponent enhanceosomes onto DNA targets (2-5). HCF-1 has no histone acetyltransferase activity and a major mechanism for its regulation of transcription is through protein-protein interaction with viral and cellular transactivators. Thus, HCF-1 associates with VP16, Oct-1, LZIP, and GABP. In one perspective, the kelch beta -propeller domain of HCF-1 serves as a specialized platform for interactions with multiple partners. It is of great interest to understand better the modular structure and the molecular mechanism through which the kelch domain recognizes the target transcription factors. In this regard, the comparison with other HCF-like proteins provides novel opportunities to study the structure and functions of HCF-1. The findings that a closely related HCF-2 interacts poorly with VP16 and hardly with LZIP (26) strongly suggest that the recognition of targets by the beta -propeller has specificity.

In this context, it is not surprising that the HCF-like HCLP-1 protein identified in this study interacts selectively with LZIP but not with VP16. Although LZIP and VP16 share a common tetrapeptide HBM recognized by HCF-1, they exhibit dramatically different sensitivities to HCF-1 point mutants in the beta -propeller domain (9), implicating that HCF-1 binds VP16 and LZIP through different mechanisms. Our findings that HCLP-1 interaction with LZIP is independent of the HBM (Fig. 4) revealed that the beta -propeller domain of HCLP-1 can recognize a distinct motif in LZIP. Further analysis will shed light on the identity of this recognition motif.

HCLP-1 is smaller in size and the entire molecule consists of a six-bladed beta -propeller (Fig. 1). Structurally, HCLP-1 is most similar to a newly identified and naturally occurring 50-kDa fragment of HCF-1, which has been found in the cytoplasm of primary G0 cells as a proteolytic product of the full-length protein (14). This HCFp50 fragment contains the intact beta -propeller domain and retains the ability to interact with VP16. HCFp50 has been suggested to mediate the suppression of viral immediate early gene expression through sequestration of VP16 in the cytoplasm (14). This resembles the action of the hepatitis C virus core protein, which retains LZIP in the cytoplasm (24). We note that endogenous HCLP-1 protein localizes to the nucleus of interphase HeLa cells (Fig. 3C). However, we do not rule out the possibility that HCLP-1 could be a cytoplasmic protein during particular phases of the cell cycle. Taking the similarity between HCLP-1 and HCFp50 into account, we postulate that HCLP-1 might also inhibit LZIP activity by sequestering it in the cytoplasm under certain circumstances. On the other hand, the HCLP-1 modulation of the LZIP-dependent DNA binding activity demonstrated in this study (Fig. 6) provides novel mechanistic insights into how HCF-like beta -propeller proteins regulate transcription. It is of great interest to see whether similar forms of HCF-like proteins such as HCFp50 might act through a similar mechanism when targeted to the nucleus.

Both HCF-1 and LZIP have been implicated in cell proliferation. A proline-to-serine point mutant at position 134 in the beta -propeller domain of HCF-1 leads to G0/G1 cell cycle arrest (15, 16). In contrast, loss of LZIP function induced by the hepatitis C virus core protein correlates with oncogenic transformation (24). We have previously proposed a model in which LZIP serves a tumor suppressor function in the development of hepatocellular carcinoma (24). Intriguingly, HCLP-1 has recently been identified independently as a specific tumor antigen for hepatocellular carcinoma (GenBankTM AF244137). This raises the possibility that HCLP-1 may have a role in hepatocarcinogenesis by targeting the LZIP tumor suppressor. Further investigations are required to test this hypothesis.

    ACKNOWLEDGEMENTS

We thank H.-f. Kung for encouragement and support; Y. P. Ching for helpful discussions; Y. Zhou, A. C. S. Chun, and R. W. M. Ng for technical assistance; J. Vogel, T. Kristie, K. V. Kibler, K.-T. Jeang, G. S. Hayward, D. Repka, G. J. Darlington, and R. Prywes for providing reagents; and Y. P. Ching, B. C. B. Ko, A. C. S. Chun, R. W. M. Ng, A. C. Y. Lo, O. S. W. Wong, and S. F. Chan for critical reading of manuscript.

    FOOTNOTES

* This work was supported by Hong Kong Research Grants Council Grant N-HKU015/00 under NSFC/RGC JRS, University of Hong Kong Grant 10300147.32993.43700.305.01, National Natural Science Foundation of China Grants 39830070 and 3001161945, National Program for Key Basic Research Project G1998051002, and National High Technology R&D Program.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) AF113131 for HCLP-1.

To whom correspondence may be addressed. Tel.: 852-22990777; Fax: 852-28171006; E-mail: dyjin@hkucc.hku.hk or yuanjg@mail.east.net.cn.

|| Leukemia and Lymphoma Society Scholar.

Published, JBC Papers in Press, May 30, 2001, DOI 10.1074/jbc.M103893200

    ABBREVIATIONS

The abbreviations used are: HCF, host cell factor; HCLP-1, HCF-like protein 1; CREB, cAMP-responsive element-binding protein; CRE, cAMP-responsive element; HBM, HCF-binding motif; BD, DNA-binding domain; AD, activation domain; GST, glutathione S-transferase; TRX, thioredoxin.

    REFERENCES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
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