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J. Biol. Chem., Vol. 276, Issue 35, 32627-32634, August 31, 2001
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§,
**
From the
Department of Molecular Genetics and
Microbiology, School of Medicine, State University of New York,
Stony Brook, New York 11794-5222 and the ¶ Department of Molecular
Biology, Princeton University, Princeton, New Jersey 08544
Received for publication, March 7, 2001, and in revised form, June 11, 2001
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ABSTRACT |
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The E2F family of transcription
factors regulates the temporal transcription of genes involved in cell
cycle progression and DNA synthesis. E2F transactivation is antagonized
by retinoblastoma protein (pRb), which recruits chromatin-remodeling
proteins such as histone deacetylases and SWI·SNF complexes to
the promoter to repress transcription. We hypothesized that E2F
proteins must reverse the pRb-imposed chromatin structure to stimulate
transcription. If this is true, E2F proteins should recruit proteins
capable of histone acetylation. Here we map the E2F-4 transactivation domain and show that E2F-1 and E2F-4 transactivation domains bind the
acetyltransferase GCN5 and cofactor TRRAP in vivo. TRRAP
and GCN5 co-expression stimulated E2F-mediated transactivation, and c-Myc repressed E2F transactivation dependent on an intact TRRAP/GCN5 binding motif. The transactivation domain of E2F-4 recruited proteins with significant histone acetyltransferase activity in
vivo, and this activity required catalytically active GCN5. E2F-4
proteins with subtle mutations in the transactivation domain exhibited a positive correlation among transcriptional activation and GCN5 and
TRRAP binding capacity and associated acetyltransferase activity. We
conclude that E2F stimulates transcription by recruiting
acetyltransferase activity and the essential cofactors GCN5 and TRRAP.
These results provide a mechanism for E2F transcription factors to
overcome pRb-mediated dominant repression of transcription.
The cell cycle is regulated in part by the temporal
expression of specific genes. A transcription factor can control the
timely induction of S phase-specific genes by either activating gene expression shortly before and during S phase or repressing expression during the remainder of the cell cycle. The E2F family of transcription factors is thought to contribute to cell cycle regulation through both
mechanisms. E2F is likely to be a critical factor in cell growth
regulation in vivo since most if not all human cancers contain a disruption in the E2F regulatory pathway (1). Consistent with
this, enforced expression of E2F proteins drives quiescent cells into S
phase and transforms cells in conjunction with activated Ras (2-6).
Furthermore, E2F binding sites are found in the promoters of numerous
genes whose expression is necessary for the initiation of S phase and
DNA replication (7-9).
DNA binding activity of the E2F transcription factor family is composed
of two subunits, E2F and DP, which form heterodimeric complexes with a
high affinity for the DNA sequence 5'-TTTCGCG-3' (7-9). Currently, the
mammalian E2F family consists of six E2F and two DP genes. The DNA
binding, heterodimerization, and marked box domains are highly
conserved among all E2F family members. E2F-1, -2, and -3 have an
extended N-terminal region containing a nuclear localization signal and
binding sites for cyclin A, the transcription factor Sp1, and the E3
ubiquitin ligase complex SCF·SKP2 (10-17). E2F-4, -5, and -6 lack
these sequences. E2Fs 1-5 have an acidic transactivation domain at the
C terminus that is overlapped by the binding site for members of the
pRb family (18-22).
The transactivation capacity of the E2F family members is primarily
controlled through interactions with the retinoblastoma (pRb)1 family of tumor
suppressors. The cell cycle machinery regulates pRb repression of E2F
transcription factors by targeting pRb for phosphorylation by
cyclin-dependent kinases (7-9). In quiescent cells, pRb
proteins are hypophosphorylated and bound to the transactivation domain
of E2F family members in the nucleus. The association of pRb with E2F
heterodimers inhibits transactivation by both physically masking the
E2F transactivation domain and by acting as a dominant transcriptional
repressor (21, 23-29). pRb·E2F complexes actively repress
transcription by recruiting chromatin-remodeling machinery to
the promoter, including histone deacetylases and SWI· SNF
complexes (30-36). Histone deacetylation is associated with
transcriptional repression via a closed chromatin structure of promoter
regions (37, 38). As cells re-enter the cell cycle, pRb becomes
hyperphosphorylated and releases "free" E2F transcription factors.
The cell cycle-dependent phosphorylation of pRb disrupts
interactions with E2F transcription factors and chromatin-remodeling
complexes and thereby relieves both passive and active repression of
E2F-responsive promoters. Relief of pRb transcriptional repression is
necessary for the expression of E2F-responsive genes and cell-cycle progression.
The regulation of transcription factors by acetylation and
deacetylation has recently attracted a great deal of attention. Acetylation of transcription factors can stimulate or repress the DNA
binding activity, regulate protein-protein interactions, change
subcellular localization, or alter protein stability (39). E2F-1, -2, and -3 are modified by acetylation. cAMP-response element-binding protein (CREB)-binding protein (CBP), its homologue p300, and the
p300/CBP-associated factor (PCAF) acetylate E2Fs to enhance DNA
binding, protein stability, and transactivation potential (20, 40, 41).
pRb-associated histone deacetylase can deacetylate E2F-1. Members of
the E2F-4 and -5 are not known targets for acetylation.
p300/CBP and PCAF act as general integrators of
signal-dependent transcription by facilitating interactions
between activators and general transcriptional machinery and
acetylating the nucleosome and transcription factors (19, 42-44). The
PCAF-related transcriptional co-activator/acetyltransferase GCN5 is
a component of the SAGA complex in yeast (y) (reviewed in Ref.
45). The human homologues of the SAGA complex consist of three distinct
complexes, i.e. TFTC, PCAF, and STAGA complexes (46,
47). These complexes are related to TFIID but are distinguished by
various combinations of other proteins involved in transcriptional
regulation. Common components of the ySAGA, TFTC, and PCAF complexes
are the GCN5 or PCAF acetyltransferases and the cofactor yTra1 or TRRAP
(48-50). TRRAP has been shown to bind the transactivation domain of
E2F-1, implicating a SAGA-like complex in E2F transcriptional
activation (51).
This work characterizes the protein interactions of the transactivation
domains of E2F-1 and E2F-4 as archetypes of the E2F family. We show
that GCN5 and TRRAP are components of E2F-1- and E2F-4-transactivating
complexes and stimulate E2F-dependent transcription. Furthermore, E2F-4 recruits proteins capable of significant
acetyltransferase activity that correlates perfectly with the ability
to bind GCN5 and stimulate transcription. The E2F-4-associated
acetyltransferase activity depends on catalytically active GCN5. GCN5
and TRRAP may contribute to E2F-dependent transcriptional
stimulation by reversing the pRb-histone deacetylase-imposed chromatin
structure to enhance access to the promoter for the general
transcription machinery.
Cell Culture--
The human U-2OS osteosarcoma and primate Cos1
kidney SV40-transformed cell lines were maintained in Dulbecco's
modified Eagle's medium supplemented with 10% (v/v) fetal bovine
serum. The human HepG2 hepatoma cell line was maintained in minimum
essential media supplemented with 10% (v/v) fetal bovine serum.
Plasmids--
M45-E2F-1 contains the cDNA of E2F-1 with a
13-amino acid epitope tag for the monoclonal antibody M45 (52) inserted
between amino acids 2 and 3 in the eukaryotic expression vector
pcDNA3 (Invitrogen). To increase the stability of the E2F-1
protein, amino acids 14-76, which contain the E3 ubiquitin ligase
binding site (17), are deleted in pcDNA3-M45-E2F-1. M45-E2F-4
contains the E2F-4 cDNA with the M45 epitope tag inserted 5' of the
E2F-4 natural ATG in pcDNA3. M45-E2F-4 truncation mutants
T-406, T-390, T-378, T-360, and T-215 were constructed by
amplification of wild-type E2F-4 cDNA truncated after the indicated
amino acid with a stop codon. The E2F-4 mutants, dl361, dl379, and
dl391, were constructed by PCR mutagenesis introducing an
NheI site 3' to amino acid 215. Separately, E2F-4-coding
regions for amino acids 361, 379, or 391 to the C terminus were
amplified introducing an NheI site 5' to the designated
amino acid and ligated to the NheI site 3' to amino acid
215. This created an in-frame fusion between amino acid 215 and the
indicated amino acid with an intervening 2-amino acid linker. M45-E2F-4
mutants E370A, C403A, and E370A/T-406 were constructed by PCR
mutagenesis. The GAL4-E2F-1 and GAL4-E2F-4 expression plasmids were
constructed by PCR amplification of E2F-designated coding sequences
with primers that introduce convenient restriction sites. The PCR
products were inserted into the pCMX-M45-GAL4 eukaryotic expression
vector to form an in-frame fusion between the GAL4 DNA binding domain
(amino acids 1-147) and the E2F transactivation domain or
transactivation domain fragments. The identities of all clones were
confirmed by DNA sequencing.
The CMV-DP1 expression vector was described elsewhere (53). The
E2a-chloramphenicol acetyltransferase, C3G5-Luc, E2F-1 pro-Luc, c-Myc
Luc, and c-Myc (mE2F) Luc reporter constructs were previously described
(54-57). The GAL-Myc, GAL4-MBII Transfections and Transactivation Assays--
HepG2 cells were
transfected by calcium phosphate coprecipitation as described (53)
24 h after subculturing. 16-18 h after transfection cells were
washed twice with Tris-buffered saline, and fresh media was added.
Whole cell extracts were prepared 24 h later, and chloramphenicol
acetyltransferase enzymatic activity was assayed using a fluorescent
chloramphenicol substrate (FAST-CAT; Molecular Probes, Eugene, OR).
Chloramphenicol acetyltransferase activity was quantified with a
PhosphorImager. U-2OS cells were transfected with Fugene 6 (Roche Molecular Biochemicals) and collected 24 h later for
luciferase and Immmunoprecipitations, Western Blots, and Acetyltransferase
Assays--
Whole cell extracts were prepared as described (62), and
equal amounts of protein were subjected to immunoprecipitation with
mouse monoclonal antibodies directed against M45 epitope, hemagglutinin
epitope, or E1A protein. Precipitated proteins were resolved by
SDS-polyacrylamide gel electrophoresis (PAGE) with 15% or 7.5% gels
and immunoblotted using standard techniques. The following primary
antibodies were used: mouse monoclonal anti-M45, mouse monoclonal
anti-hemagglutinin 12CA5 (Roche Molecular Biochemicals), mouse
monoclonal anti-E1A M73 (Labvision), goat polyclonal anti-TRRAP T-17
(Santa Cruz), goat polyclonal anti-GCN5 N-18 (Santa Cruz), and rabbit
polyclonal anti-p300 N-15 (Santa Cruz). Immunoreactive bands were
detected with an ECL kit (Amersham Pharmacia Biotech).
Immunoprecipitation acetyltransferase assays were performed using a
modification of the assay previously described (63). Immunoprecipitated
proteins were washed twice in lysis buffer and twice with IPH buffer
(50 mM Tris-HCl, pH 8.0, 150 mM NaCl, 5 mM EDTA, 0.5% (by volume) Nonidet P-40, 10 mM
butyric acid, and 0.1 mM phenylmethylsulfonyl fluoride).
After the final wash, the buffer was aspirated down to 100 µl. 5% of
the precipitant slurries were resolved by SDS-PAGE and immunoblotted
with anti-M45 antibodies, and immunoreactive bands were quantified
using AttoPhos alkaline phosphatase substrate (Promega) and a
PhosphorImager. The percentage of wild-type protein
immunoprecipitated was used to normalize the acetyltransferase assay
data. The remaining slurry was assayed for acetyltransferase activity
by adding 2 µl of 20 mg ml Transactivation Domain of E2F-4 Resides between Amino Acids 360 and
413, the C Terminus--
E2F-1 and E2F-4 represent two structural
subclasses of E2F family members. The transactivation domain of E2F-1
has been identified as amino acids 368-437 (64, 65), whereas the
transactivation domain of E2F-4 has not been well characterized. To
compare functional properties of E2F-1 and E2F-4, we mapped the
transactivation domain of E2F-4. We established a transactivation assay
with exogenously expressed wild-type and mutant E2F-4 proteins and an
E2F-responsive reporter construct that contains the adenovirus E2a
promoter (nucleotide
We analyzed mutant E2F-4 proteins to map the transactivation domain
(Fig. 1B). Truncating E2F-4 at amino acid 360 (T-360) diminished transactivation potential to the basal level as established by the T-215 mutant that lacks the entire C-terminal domain. The weak
transactivation activity is not a unique property of mutant T-360 since
other mutants with truncations N-terminal to amino acid 360 showed the
same level of activity (data not shown). Internal deletion of amino
acids 215-360 (dl361) did not lead to transactivation levels
significantly different from that seen with wild-type E2F-4. Deletions
from amino acid 215 to beyond amino acid 360 showed significantly
reduced transactivation potential. Similar mapping results were
obtained from adenoviral E2a and cellular E2F-1 and c-Myc promoter
constructs in both HepG2 and U-20S cell lines (data not shown). Gel
shift analysis of the E2F-4 mutants shows that DNA binding activity was
not compromised (data not shown), and protein expression was similar
across the panel of mutants (Fig. 1C). These results show
that the transactivation domain of E2F-4 is contained within amino
acids 360 and 413.
To directly assess E2F transactivation potential, we analyzed the
minimal homologous portions of the E2F-1 and E2F-4 transactivation domains fused to a DNA binding domain of a heterologous protein (GAL4).
The E2F-1 (379) and E2F-4 (360) segments contain potent transactivation domains, and deletion of either the C-terminal or
N-terminal half of the E2F-1 or E2F-4 transactivation domain severely
disrupted transcriptional capacity (data not shown). We conclude that
these segments contain most, if not the entire, transactivation domains
of E2F-1 and E2F-4 and activate transcription independent of other
portions of the wild-type proteins and a DP binding partner.
Analysis of E2F-4 Transactivation Domain Mutants--
We have
constructed and analyzed a panel of site-directed mutants in the E2F-4
transactivation domain that compromise transactivation capacity.
Deletion of the C-terminal seven amino acids (T-406), alanine-substitution mutants at glutamic acid 370 (E370A), or cysteine
403 (C403A) marginally reduced E2F-4 transactivation (Fig.
2). However, the double mutant
E370A/T-406 showed the same low activity as when the entire
transactivation domain was deleted (T-360). Protein expression
(see below) and DNA binding activity (data not shown) of these
mutants were similar to wild-type E2F-4.
Coactivators p300 and PCAF Are Not Components of
E2F-transactivating Complexes--
To explain the loss of
transcriptional capacity by the E2F-4 mutant E370A/T-406, we
addressed whether reported E2F-1 transactivation domain-associated
protein interactions were disrupted in vivo. We were unable
to establish in vivo E2F-1 or E2F-4 interactions with p300
or PCAF despite the fact that these proteins were readily apparent in
control immunoprecipitations with the adenovirus E1A 12S protein (Fig.
3, A and B).
Furthermore, a truncated p300 protein (amino acids 1256-2414) that
contains the E2F-1 binding region, as determined by in vitro
GST pull-down experiments (19), did not co-precipitate with E2F-1 or
E2F-4 (data not shown).
Consistent with these results, coexpression of p300 or PCAF failed to
stimulate E2F-dependent transcription (Fig. 3, C
and D). The reporter E2F-1 pro-luciferase contains the
E2F-responsive murine E2F-1 promoter (nucleotide E2F-4 Transactivation Domain Binds TRRAP and GCN5--
TRRAP has
been implicated in the recruitment of acetyltransferase activity to
promoters by transcriptional activators E2F-1 and c-Myc (49, 51). To
observe potential E2F-4-TRRAP complexes in vivo,
immunoprecipitated E2F-4 proteins were analyzed by immunoblotting for
TRRAP and various histone acetyltransferases. Endogenous TRRAP specifically immunoprecipitated with wild-type E2F-1 and E2F-4 (Fig.
4A). The E2F-4 mutants E370A
and T-406 immunoprecipitated TRRAP at the same levels as wild-type
E2F-4, whereas the mutants E370A/T-406 and E370A/T-360 did not
bind TRRAP. The same pattern was observed when the E2F precipitates
were immunoblotted for endogenous GCN5 (Fig. 4A). Mutant
C403A, which was modestly reduced in transactivation activity (Fig. 2),
bound TRRAP and GCN5 at reduced levels compared with wild-type E2F-4.
This suggests that TRRAP and GCN5 act in concert as components of
E2F-transactivating complexes. Western blot analysis showed that both
wild-type and mutant proteins were expressed at similar levels (Fig.
4A). Similar binding patterns were obtained from E2F
precipitates when epitope-tagged TRRAP or GCN5 were cotransfected with
the E2F expression plasmids in Cos1 and U-2OS cells (data not shown).
Thus, the transactivation domain of E2F-4 interacts with TRRAP and the
acetyltransferase GCN5. Since the TRRAP and GCN5 binding patterns of
the E2F-4 mutants correlate well with their ability to stimulate
transcription (Fig. 2), these results imply that E2F transcription
factors recruit a SAGA-like complex to the promoter to stimulate
transcription.
TRRAP and GCN5 Function in E2F-dependent
Transcription--
If TRRAP association with E2F transactivation
domains is essential for transcriptional activation, then
overexpressing TRRAP should stimulate E2F-dependent
transcription. Wild-type E2F-1 and E2F-4 transactivation of the E2F-1
promoter was stimulated by TRRAP overexpression (Fig. 4B).
TRRAP overexpression did not significantly influence the basal level of
the reporter. However, E2F-1- and E2F-4-mediated transcription was
stimulated 2- and 3.1-fold, respectively, by co-expression of TRRAP.
TRRAP transcriptional stimulation was dependent on a functional E2F
transactivation domain, since co-expression of TRRAP with the E2F-4
transactivation domain-deficient mutant (T360) did not significantly
activate transcription above basal levels. TRRAP also stimulated E2F-4 transactivation of the c-Myc promoter dependent on an intact E2F binding site (Fig. 4C). The reporter c-Myc-luciferase
contains the E2F-responsive human c-Myc promoter (nucleotide
GCN5 stimulated E2F-responsive reporters independent of exogenous E2F
proteins (Fig. 4, D and E). To confirm the
involvement of E2F in GCN5 transactivation, we overexpressed GCN5 in
the presence of increasing amounts of a dominant-negative E2F-4 mutant
(T-215) that binds DNA but lacks transactivation capacity (Fig.
1B) and the ability to bind GCN5 (data not shown).
Increasing concentrations of T-215 repressed GCN5 activation of the
E2F-1 pro-Luc reporter in a dose-dependent manner (Fig.
4D), suggesting that T-215 displaced endogenous active
E2F-GCN5 complexes from the promoter. Similarly, overexpression of GCN5
stimulated the c-Myc promoter dependent on a wild-type E2F binding site
(Fig. 4E). Since GCN5 activity is not completely squelched
by T-215 overexpression or mutation of the E2F consensus site, it
remains possible that GCN5 functions through other transcription
factors in addition to E2F. However, these observations show that GCN5
is an important cofactor for E2F-mediated transcription.
The N Terminus of c-Myc Represses Transcription Activity of E2F-4
Complexes--
If TRRAP is an essential cofactor in
E2F-transactivating complexes, then proteins that bind TRRAP might
compete for binding to TRRAP and reduce E2F-dependent
transcription. To test this idea, we used c-Myc as a competitor in
E2F-4 transactivation assays. c-Myc binds TRRAP via the conserved MBII
region (51). A truncated form of c-Myc was used in these assays that
lacks the C-terminal DNA binding and dimerization domains but contains
the N-terminal 262 amino acids encompassing its transactivating and
transforming activities. The c-Myc DNA-binding/dimerization function
was provided by the GAL4 DNA-binding/dimerization domain to avoid the
complication of co-expressing a c-Myc heterodimerization partner (58).
E2F-4 activated transcription to normal levels in the presence of the GAL4 DNA binding domain, GAL0 (Fig. 5).
The GAL4-Myc fusion repressed E2F-dependent transcriptional
activation. Deletion of the c-Myc TRRAP binding domain (GAL4-MBII The E2F-4 Transactivation Domain Recruits Proteins Capable of
Histone Acetylation--
Since E2F transactivation is antagonized by
Rb-associated histone deacetylases, we hypothesized that E2F
recruits histone acetyltransferases to reverse the Rb-histone
deacetylase-mediated repression. We assayed histone acetyltransferase
activity of E2F-4-transactivating complexes assuming that TRRAP and
GCN5 are part of a acetyltransferase/transcriptional coactivator
complex. E2F-4 complexes were immunoprecipitated from Cos1 whole cell
extracts and washed. Precipitated E2F-4 proteins were quantified from
5% of the slurries, whereas the remainder was assayed for the ability
to transfer radiolabeled acetyl groups from acetyl-CoA to partially
purified histones. Acetyltransferase activity associated with the E2F-4
complexes was normalized based on the quantification of the
immunoprecipitated proteins. Wild-type E2F-4 recruited a significant
acetyltransferase activity that was lost in the transactivation
domain-deficient mutant (T-360) (Fig.
6A). As with T-360, the
transactivation-deficient E2F-4 mutant E370A/T-406 lacked
acetyltransferase activity, whereas individual mutants retained a
portion of wild-type acetyltransferase activity. The associated
acetyltransferase activity of E2F-4 mutant displays a positive
correlation with its ability to stimulate transcription (Fig. 2) and
bind TRRAP and GCN5 (Fig. 4A).
Presumably the E2F-4-associated acetyltransferase is GCN5, since GCN5
is the only acetyltransferase that binds E2F-4. To test this, we
co-expressed either wild-type or catalytically inactive GCN5 with E2F-4
and analyzed E2F-4-associated acetyltransferase activity (Fig.
6B). GCN5 mutants 575 EIV and 586 QVKGYG contain alanine
substitutions for the indicated amino acids and destroy the catalytic
site, as determined by the crystal structure of tetrahymena GCN5 (67).
The E2F-4-associated acetyltransferase activity was similar to
endogenous proteins and overexpressed wild-type GCN5. However,
E2F-4-associated acetyltransferase activity was reduced in the presence
of GCN5 mutants 575 EIV and 586 QVKGYG. Western blot analysis showed
that both wild-type and mutant proteins were expressed at similar
levels (data not shown). This established that GCN5 is the relevant
acetyltransferase activity binding to E2F-4 in vivo. These
results further support our hypothesis that the recruitment of
acetyltransferase activity is essential for E2F transcriptional
activation since the ability of the panel of E2F-4 mutants to bind GCN5
and stimulate transcription correlates well with the associated
acetyltransferase activity.
In this report we have identified a potential mechanism whereby
E2F transcription factors overcome the effect of pRb-histone deacetylase-imposed chromatin condensation. We have demonstrated two
important points about the mechanism of transactivation by E2F family members.
First, GCN5 and TRRAP are important cofactors of
E2F-transactivating complexes. Both E2F-1 and E2F-4 bound GCN5 and
TRRAP in vivo. TRRAP stimulated transactivation from
wild-type E2F-1 and E2F-4 proteins dependent on an intact
transactivation domain and E2F consensus sites in the reporter. GCN5
activates E2F-responsive promoters dependent on endogenous E2F
transcription factors and E2F binding sites. In contrast, co-expression
of p300, CBP, or PCAF had no influence on or repressed E2F
transactivation in our assays and did not bind E2F-1 or E2F-4 in
vivo. This is surprising because acetylation by p300 and PCAF is
known to enhance DNA binding activity, protein stability, and
transactivation capacity of E2F-1 (19, 40, 41). To establish that p300
and PCAF stimulated E2F-1 transcriptional activation, synthetic
reporters consisting of multiple E2F binding sites were used (19, 41),
which may account for a higher specific activity than was masked in our assays with native E2F-responsive promoters. Furthermore, the cellular
proto-oncoprotein c-Myc suppressed E2F-4 transactivation capacity
dependent on an intact TRRAP binding domain, MBII. Similarly, PCAF
repressed E2F-mediated transcription and suggested that overexpression of PCAF sequestered an essential component of E2F transactivation into
nonfunctional complexes, e.g. TRRAP. Taken together, this work demonstrates that E2F-transactivating complexes consist of two
components of human SAGA-like complexes, namely GCN5 and TRRAP, which
stimulate E2F activity, are in limiting supply in the cell, and can be
competed away from E2F heterodimers.
Second, although E2F-4 is not a target of acetylation (41), E2F-4
proteins recruit potent acetyltransferases. E2F-4 transactivation domain mutants that are deficient in transactivation capacity also lack
significant associated acetyltransferase activity. Our results show
that GCN5 is responsible for the E2F-4-associated acetyltransferase
activity, since E2F-4 mutants that lack associated acetyltransferase
activity do not bind GCN5 (Fig. 4A), and catalytically inactive GCN5 mutants squelched E2F-4-associated acetyltransferase activity (Fig. 6B). Furthermore, we demonstrated that p300
and PCAF do not form stable complexes with E2F-1 and E2F-4 in
vivo, although p300 and PCAF proteins are readily associated with
the adenovirus E1A protein in parallel co-immunoprecipitations (Fig. 3,
A and B). Two previous reports show in
vivo interactions between E2F-1 and p300 or PCAF using
overexpressed proteins (40, 68). The conflicting results may reflect
the transient nature of p300- or PCAF-E2F interactions where
overexpression of both test proteins may allow detection of weak
protein-protein interactions. Alternatively, these differences may
reflect cell line-specific E2F-acetyltransferase interactions. In our
experiments with two cell lines, E2F-1 and E2F-4 associated with
endogenous GCN5 and TRRAP proteins. This work is the first
demonstration that transcriptional stimulation by E2F family members
requires functional GCN5 that is capable of histone acetylation.
The correlation among the ability of the E2F-4
transactivation domain mutants to stimulate transcription, bind TRRAP,
and GCN5 and recruit acetyltransferase activity indicates an essential role for establishment of an E2F·TRRAP·GCN5 ternary complex in E2F-mediated transactivation. Since E2F-4 is not a known substrate for
acetyltransferases, the recruitment of active GCN5 to the promoter must
stimulate transcription by acetylating downstream effectors such as
histones or the general transcription machinery. This provides an
important mechanism by which E2F transcription factors antagonize the
dominant inhibitory effect of pRb-histone deacetylases repression.
Transcriptional activation domains are thought to function by
either recruiting transcription machinery or complexes capable of
reorganizing chromatin to the promoter (69). Previously, E2F
transcription factors were thought to stimulate transcription by
stabilizing the RNA polymerase II pre-initiation complex through interactions with the general transcription machinery. There are several reports describing interactions between transcription machinery and E2F family members, e.g. TBP and p62
subunit of TFIIH (22, 70-72). These interactions were established by
in vitro GST pull-down experiments, which do not address the
physiological relevance of these interactions in transcriptional
activation. We also observed interactions between GST-purified E2F-1 or
E2F-4 and in vitro translated TBP (data not shown). However,
such interactions were not observed in vivo using
co-immunoprecipitation assays. In vitro transcription assays
with highly purified general transcription factors and E2F heterodimers
have established that E2F-4 stabilizes a TFIID·TFIIA complex at the
promoter that is resistant to pRb disruption (27). Whether E2F proteins
stabilize TFIID·TFIIA complexes through interactions with TBP and
whether E2F proteins affect RNA polymerase II processivity through
interactions with TFIIH remain to be clarified. If E2F
interactions with TBP and TFIIH are relevant in vivo,
then a complete model of E2F transactivation mechanisms involves
contacts among the transactivation domains and both the transcription
machinery and acetyltransferase complexes. In this scenario, E2F
transactivation domains stimulate transcription by recruiting
components of the RNA polymerase II pre-initiation complex and proteins
capable of modifying the nucleosome.
Histone acetylation is intimately linked to transcriptional activation.
The acetylation state of a promoter is a dynamic situation regulated in part by the recruitment of acetyltransferase and deacetylase activities that control chromatin structure, various transcription factor activities, and, ultimately, transcriptional initiation or repression. With the identification of many
transcriptional coactivators (e.g. p300 and SAGA) containing
histone acetyltransferase activity, chromatin reorganization has become
a important mechanism for regulating transcription. It has been
proposed that TRRAP interfaces with transcriptional activators to
recruit histone acetyltransferases to the promoter. The isolation of
multiple acetyltransferase-transcriptional coactivator complexes
containing TRRAP or the yeast homologue Tra1 supports this idea. The
human TFTC, PCAF, and yeast SAGA complexes contain TRRAP, GCN5, or PCAF acetyltransferases, multiple TBP-associated factors (TAFs), Ada proteins, and Spt proteins (46, 47). We propose that E2F transcription factors recruit acetyltransferase-transcriptional coactivator complexes, similar to TFTC or ySAGA complexes, to the promoter to
transactivate gene expression. In support of recruitment of GCN5 and
TRRAP in toto as a SAGA-like complex, GCN5 and TRRAP exist
in a complex in mammalian cells independent of transcription factors
such as c-Myc (49).
Exploring E2F-activated transcription is complicated by multiple layers
of regulation and because cell lines used to assay E2F function
commonly have mutations that deregulate the endogenous E2F regulatory
pathway. To circumvent these problems, we assayed the minimal
transactivation domains of E2F-1 and E2F-4 in a controlled context. To
that end, the GAL4-E2F chimeric proteins showed that the E2F-1
transactivation domain is much more potent than the E2F-4
transactivation domain (data not shown). This is consistent with
previous work (73). Many reports suggest that E2F transcriptional activating and repressing activities are mediated by different family
members. It is hypothesized that E2F-1, -2, and -3 are transcriptional-activating and cell cycle-promoting family members, whereas E2F-4 and E2F-5 are repressing and cell cycle-inhibiting members (reviewed in Ref. 7). However, this may be an
oversimplification since E2F-4 retains a potent transactivation domain
that is conserved among E2Fs 1-5 and the ability to bind co-activators
and acetyltransferases. These observations suggest that E2F-4
transcription factors may stimulate transcription in a restricted
developmental or cell cycle window through the GCN5-induced relaxation
of chromatin structure at target promoters.
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INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
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EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
, and C
F-TRRAP expression plasmids were described elsewhere (51, 58). pCMV
-p300 eukaryotic expression plasmid encoding the entire human p300 protein was kindly
provided by D. Livingston (59). pCI-FLAG-PCAF expression vector
contains the human PCAF-coding sequence with an N-terminal FLAG epitope
and was kindly provided by Y. Nakatani and co-workers (60). pHAh-PCAF
was cloned by PCR amplification of the entire PCAF-coding sequence with
primers that introduce convenient restriction sites. The PCR product
was inserted into pCMH6KR expression vector (61) to form an in-frame
fusion between an epitope consisting of hemagglutinin epitope and a
six-histidine linker and the PCAF ATG. The C
S-GCN5 expression
plasmid contains the entire coding sequence for human GCN5 and was
kindly provided and cloned by M. Cole. Catalytically inactive GCN5
mutants were constructed by PCR mutagenesis to create alanine
substitutions at the indicated amino acids.
-galactosidase assays per the manufacturer's instructions (Promega).
1 calf thymus histones
(Sigma) and 2.5 µl of [3H]acetyl-CoA (1.85 MBq; 7.4 GBq
mmol
1; PerkinElmer Life Sciences). Reactions were
incubated at 30 °C for 1 h, and histone acetylation was
measured by the P-81 filter assay.
![]()
RESULTS
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
284 to +62) driving the chloramphenicol
acetyltransferase gene (54). Endogenous E2F and pRb proteins complicate
the mapping of E2F transactivation domains in vivo. Besides
directly stimulating transcription, overexpressed E2F proteins may
activate transcription indirectly by titrating pRb proteins from
endogenous E2Fs or displacing E2F-pRb complexes from the promoter. The
transactivation levels of an E2F-4 mutant with a deletion of the entire
pRb binding site (T-391) did not dramatically differ from wild-type
E2F-4 and established that E2F-4 mutants do not activate transcription
by sequestering repressing pocket proteins away from endogenous E2F
heterodimers (Fig. 1B). This
showed that pocket protein binding is not necessary to activate
transcription in our transient assays. A DNA binding-deficient E2F-4
mutant did not activate transcription above the levels of the reporter
alone and established that pRb sequestration is not significant in
these assays (data not shown). The difference between the level of
transcription from the reporter alone and an E2F-4 mutant that contains
only the DNA binding and dimerization domains (T-215) may have been due
to displacement of endogenous repressing E2F·pRb complexes from the
reporter (Fig. 1B).

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Fig. 1.
The C-terminal 53 amino acids of E2F-4
contain the transactivation domain. A, schematic
diagram of E2F-4. Conserved DNA binding, dimerization
(Dimer), and marked box (MB) domains and relevant
amino acids of E2F-4 mutants are indicated. B, HepG2 cells
were co-transfected with 1 µg of the adenoviral E2a-chloramphenicol
acetyltransferase reporter, 0.25 µg of pCMV-DP1, and 0.25 µg of
pcDNA3-E2F-4 constructs as indicated. The results are the average
of three independent experiments with S.E. indicated. The promoter
activity of E2a-chloramphenicol acetyltransferase was set as 1. C, U-2OS cells were co-transfected with pCMV-DP1 and
pcDNA3-E2F-4 expression plasmids as indicated. Protein expression
was analyzed by Western blotting against the M45-epitope. Each
lane contains 15 µg of whole cell extract. T,
truncation.

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Fig. 2.
Subtle mutations disrupt E2F-4
transactivation capacity. U-2OS cells were co-transfected with 0.1 µg of E2F1 pro-Luc reporter and 50 ng of pcDNA3-E2F-4 constructs
as indicated. The results are the average of three independent
experiments in duplicate with the S.E. indicated. The promoter activity
of E2F1 pro-Luc was set as 1. T, truncation.

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Fig. 3.
p300 and PCAF coactivators fail to affect E2F
transactivation. A, Cos1 cells were transfected with
the indicated expression plasmids. CMV-DP1 expression vector was
included in lanes 1-3. Whole cell extracts were prepared
24 h later. The top panels show protein expression of
transfected plasmids from 15 µg of whole cell extracts
Western-blotted for M45-epitope (lanes 1-3) or E1A protein
(lanes 4 and 5). Complexes were
immunoprecipitated (IP) with anti-M45 (lanes
1-3) or anti-E1A (lanes 4 and 5)
antibodies, extensively washed, and resolved on a 7.5% SDS-PAGE gel.
Complexes were analyzed by Western blotting using anti-p300 antibodies
(bottom panel). B, in an independent experiment,
pHAh-PCAF expression plasmid was co-transfected with the same plasmids
as in A. Protein expression of transfected plasmids was
similar to that shown in A. Immunoprecipitations were
carried out as above and analyzed by Western blotting with
anti-hemagglutinin antibodies (top panel). Protein
expression of hemagglutinin-PCAF is shown in the bottom
panel. Each lane contains 15 µg of whole cell extract.
C, U-2OS cells were co-transfected with 0.1 µg of E2F1
pro-Luc reporter, 50 ng of pCMV-DP1, 50 ng of pcDNA3-E2F-1 or
E2F-4, and 1 µg of pCMV
-p300 constructs as indicated.
D, U-2OS cells were co-transfected with 0.1 µg of E2F1
pro-Luc reporter, 50 ng of pcDNA3-E2F-4, 50 ng of pCMV-DP1, and 1 µg of pHAh-PCAF constructs where indicated. Empty expression vectors
were added to keep the amount of transfected DNA constant. The results
presented in C and D are the average of three
independent experiments in duplicate with S.E. indicated. The promoter
activity of E2F1 pro-Luc was set as 1.
176 to +36), driving
the luciferase gene (56). E2F-1 transactivation was squelched by
overexpression of p300, whereas E2F-4 activity was not affected (Fig.
3C). This is consistent with previous work (66). PCAF
coexpression consistently repressed E2F-mediated transcriptional
activation (Fig. 3D). This suggested that overexpressing
PCAF sequestered an essential component of E2F-transactivating
complexes. Similar results were obtained from the E2F-responsive c-Myc
promoter (data not shown).

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Fig. 4.
TRRAP and GCN5 bind E2F transcription factors
in vivo and stimulate E2F-mediated
transactivation. A, Cos1 cells were transiently
transfected with pCMV-DP1 and the indicated expression vectors. The
top panel shows expression of transfected proteins from 15 µg of lysates Western-blotted for the common M45 epitope. Immune
complexes were resolved on a 7.5% SDS-PAGE gel and analyzed by Western
blotting using anti-TRRAP or anti-GCN5 antibodies (bottom
panels). IP, immunoprecipitation. B, U-2OS
cells were co-transfected with 0.1 µg of E2F1 pro-Luc reporter, 50 ng
of pCMV-DP1, 50 ng of pcDNA3-E2F-1, -E2F-4, or -E2F-4 mutant
Thr-360, and 1 µg of C
F-TRRAP constructs as indicated.
C, U-2OS cells were transfected with 0.1 µg of pCMV-DP1,
0.1 µg of pcDNA3-E2F-4, and 1 µg of C
F-TRRAP constructs
where indicated. 0.1 µg of wild-type c-Myc Luc (open bar)
or c-Myc (mE2F) Luc (shaded bar) reporter was
transfected as indicated. D, U-2OS cells were co-transfected
with 0.1 µg of E2F1 pro-Luc reporter, 1 µg of C
S-GCN5, and
increasing amounts of pcDNA3-E2F-4 (T215) constructs as
indicated. E, U-2OS cells were transfected with 1 µg of
C
S-GCN5 and either 0.1 µg of wild-type c-Myc Luc (open
bar) or c-Myc (mE2F) Luc (shaded bar)
constructs where indicated. Empty expression vectors were added to keep
the amount of transfected DNA constant in all experiments. The
activities of E2F-1 and E2F-4 were low because the addition of empty
vectors reduced transactivation levels. Each graph
(B--E) represents the average of three
independent experiments in duplicate with S.E. indicated. In each
experiment the activity of the reporter alone was set as 1. T-, Thr-.
140 to
+340), driving the luciferase gene (57). E2F-4 transactivation and TRRAP stimulation of E2F-4 activity required the wild-type E2F consensus site lacking in the c-Myc (mE2F) Luc reporter. These results
establish TRRAP as an essential component of E2F-transactivating complexes.
)
abolished the repressive effect of GAL4-Myc on E2F-4 transactivation.
GAL4 chimeric proteins were expressed at similar levels as seen by
immunoblotting with GAL4 antibodies (data not shown). These results
implicate TRRAP as an essential component of E2F-transactivating
complexes that can be competed away by overexpressing c-Myc.

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Fig. 5.
c-Myc acts as a dominant repressor of E2F-4
transactivation. U-2OS cells were co-transfected with 0.1 µg of E2F1 pro-luciferase reporter, 50 ng of pcDNA3-E2F-4, 50 ng
of pCMV-DP1, and 1 µg of GAL4-Myc chimera constructs as indicated.
Empty expression vectors were added to keep the amount of transfected
DNA constant. The results are the average of three independent
experiments in duplicate with S.E. indicated. The promoter activity of
E2F1 pro-Luc was set as 1.

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Fig. 6.
E2F-4 associates active GCN5
acetyltransferase in vivo dependent on a functional
transactivation domain. A, Cos1 cells were transiently
transfected with pCMV-DP1 and either M45-tagged wild-type E2F-4, E2F-1,
or mutant E2F-4 expression vectors as indicated. Whole cell extracts
were prepared 24 h later and incubated with anti-M45 monoclonal
antibody. After extensive washing, 5% of the immune complexes were
resolved on a 12.5% SDS-PAGE gel and quantified by Western blotting
using anti-M45 antibodies. The remaining immune complexes were analyzed
in a liquid acetyltransferase assay using [H3]acetyl-CoA
and calf thymus histones as substrates. Histones were immobilized and
washed extensively, and the incorporated radioactivity was determined
by liquid scintillation counting. The cpm data were normalized to the
percentage of wild-type protein immunoprecipitated. The results are the
average of two independent experiments with S.E. indicated.
B, Cos1 cells were transfected with pcDNA3-E2F-4,
pCMV-DP1, and either wild-type or mutant C
S-GCN5 (CbS)
expression vectors as indicated. GCN5 mutants QV and EIV are
catalytically inactive with alanine substitutions in the catalytic site
at amino acids 586QVKGYG/591AAAAAA/575EIV577AAA, respectively.
Immunoprecipitation-acetyltransferase assays were preformed as above,
and the cpm data were normalized to the percentage of E2F-4 protein
immunoprecipitated. The results are the average of two independent
experiments with S.E. indicated. T, truncation.
![]()
DISCUSSION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
| |
ACKNOWLEDGEMENTS |
|---|
We thank our colleagues for many helpful discussions and Gia Feeney for excellent technical help.
| |
FOOTNOTES |
|---|
* This work was supported in part by Public Health Service Grants CA28146 (to P. H.) and CA55248 (to M. D. C.).The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
§ Supported by National Institutes of Health Training Grant CA09176.
¶ Supported by a Leukemia Society of America Special Fellowship. Present address: The Wistar Institute, 3601 Spruce St., Philadelphia, PA 19104.
** To whom correspondence should be addressed: Dept. of Molecular Genetics and Microbiology, School of Medicine, SUNY at Stony Brook, Stony Brook, NY 11794-5222. Tel.: 631-632-8813; Fax: 631-632-8891; E-mail: phearing@ms.cc.sunysb.edu.
Published, JBC Papers in Press, June 19, 2001, DOI 10.1074/jbc.M102067200
| |
ABBREVIATIONS |
|---|
The abbreviations used are: pRb, retinoblastoma protein; CBP, cAMP-response element-binding protein (CREB)-binding protein; PCAF, p300/CBP-associated factor; Luc, luciferase; GST, glutathione S-transferase; y-, yeast; PCR, polymerase chain reaction; HA, hemagglutinin; CMV, cytomegalovirus; PAGE, polyacrylamide gel electrophoresis; TBP, TATA binding protein.
| |
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J. E. Schaley, M. Polonskaia, and P. Hearing The Adenovirus E4-6/7 Protein Directs Nuclear Localization of E2F-4 via an Arginine-Rich Motif J. Virol., February 15, 2005; 79(4): 2301 - 2308. [Abstract] [Full Text] [PDF] |
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S. Taubert, C. Gorrini, S. R. Frank, T. Parisi, M. Fuchs, H.-M. Chan, D. M. Livingston, and B. Amati E2F-Dependent Histone Acetylation and Recruitment of the Tip60 Acetyltransferase Complex to Chromatin in Late G1 Mol. Cell. Biol., May 15, 2004; 24(10): 4546 - 4556. [Abstract] [Full Text] [PDF] |
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M. V. Frolov and N. J. Dyson Molecular mechanisms of E2F-dependent activation and pRB-mediated repression J. Cell Sci., May 1, 2004; 117(11): 2173 - 2181. [Abstract] [Full Text] [PDF] |
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R. J. Greenwald, J. R. Tumang, A. Sinha, N. Currier, R. D. Cardiff, T. L. Rothstein, D. V. Faller, and G. V. Denis E{micro}-BRD2 transgenic mice develop B-cell lymphoma and leukemia Blood, February 15, 2004; 103(4): 1475 - 1484. [Abstract] [Full Text] [PDF] |
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C. Kramps, V. Strieder, A. Sapetschnig, G. Suske, and W. Lutz E2F and Sp1/Sp3 Synergize but Are Not Sufficient to Activate the MYCN Gene in Neuroblastomas J. Biol. Chem., February 13, 2004; 279(7): 5110 - 5117. [Abstract] [Full Text] [PDF] |
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G. Caretti, V. Salsi, C. Vecchi, C. Imbriano, and R. Mantovani Dynamic Recruitment of NF-Y and Histone Acetyltransferases on Cell-cycle Promoters J. Biol. Chem., August 15, 2003; 278(33): 30435 - 30440. [Abstract] [Full Text] [PDF] |
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X. Liu, J. Tesfai, Y. |