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J. Biol. Chem., Vol. 276, Issue 36, 33293-33296, September 7, 2001
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From the a Department of Pediatrics, Division of
Newborn Medicine, Children's Hospital, Harvard Medical School, Boston,
Massachusetts 02115, c Department of Biochemistry and Molecular
Biology, Monash University, Melbourne, Victoria 3800, Australia,
d Departments of Haematology and Medicine, University of
Cambridge, Wellcome Trust Centre for Molecular Mechanisms in Disease,
Cambridge Institute for Medical Research, Wellcome Trust/MRC Building,
Hills Road, Cambridge CB2 2XY, United Kingdom, e Division of
Hematology-Oncology/Medicine, University of North Carolina, Chapel
Hill, North Carolina 27599, f Department of Medicine, Box Hill
Hospital, Monash University, Melbourne, Victoria 3128, Australia,
g Department of Biochemistry and Molecular Biology, University
of Illinois, Chicago, Illinois 60612, h Department of Molecular
Genetics and Microbiology, University of Florida College of Medicine,
Gainesville, Florida 32610, i Arriva Pharmaceuticals, Alameda,
California 94501, j Center for Blood Research, Harvard Medical
School, Boston, Massachusetts 02115, k Burnham Institute, San
Diego, California 92037, l Department of Biochemistry and
Molecular Biology, University of Georgia, Athens, Georgia 30602
The serpins (serine
proteinase inhibitors) are a
superfamily of proteins (350-500 amino acids in size) that fold into a
conserved structure and employ a unique suicide substrate-like
inhibitory mechanism. The serpins were last reviewed in 1994 (1). More recent studies show: 1) an expanded distribution within the kingdoms of
metazoa and plantae, as well as certain viruses, 2) a surprising effect
on the covalently bound target proteinase, and 3) novel biochemical and
biological functions.
Most serpins inhibit serine proteinases of the chymotrypsin family.
However, cross-class inhibitors have been identified. The viral serpin
CrmA and, to a lesser extent, PI9 (SERPINB9) inhibit the cysteine
proteinase, caspase 1 (2), and
SCCA11 (SERPINB3) neutralizes
the potent papain-like cysteine proteinases, cathepsins L, K, and S
(3). In addition, several members no longer function as proteinase
inhibitors but perform other roles such as hormone transport
(thyroid-binding globulin (SERPINA6), corticosteroid-binding globulin
(SERPINA7)), and blood pressure regulation (angiotensinogen (SERPINA8))
(1).
Data base searching provides evidence for ~500 serpins, with
full-length coding sequences known or predicted for about one-half of
those (4). A phylogenetic analysis divides serpins into 16 clades (see
Supplemental Data, Table A) and 10 highly diverged "orphans" (4).
These data facilitate the construction of a consistent expandable
nomenclature (see Supplemental Data for Serpin Nomenclature Guidelines,
Table B).
The completed DNA sequences of several organisms have yielded insight
into the complexity of the family. The Caenorhabditis elegans,
Drosophila melanogaster, and Arabidopsis thaliana
genomes encode for ~20,000, 13,000, and 25,000 genes, respectively.
However, these three species harbor ~9, 32, and 13 serpin genes,
respectively. The nonlinear relationship among the number of serpin
genes, relative to the total gene number, suggests that at least a
subset of serpins has evolved divergent functions despite a striking
degree of sequence and structural conservation.
Serpin Conformations--
Serpins adopt a metastable
conformation that is required for their inhibitory activity (5). This
conformation consists of a conserved secondary structure comprised of
The most informative serpin structures, from a mechanistic viewpoint,
are those of a Michaelis complex between Serpin 1 and trypsin (Fig.
1D) and of a covalent complex between Serpin Inhibitory Mechanism--
Serpins inhibit serine
proteinases by an irreversible suicide substrate mechanism when the
interaction proceeds down the inhibitory arm of a branched pathway
(Fig. 2) (6). In the inhibitory
pathway, the proteinase initially forms a noncovalent
Michaelis-like complex (Fig. 1D) through interactions with
residues flanking the scissile bond (P1-P1'). Attack of the active
site serine on the scissile bond leads to a covalent ester linkage
between Ser-195 of the proteinase and the backbone carbonyl of the P1
residue and cleavage of the peptide bond (6). It is likely that only at
this stage, with removal of the restraint, does the RSL start to insert
into
The point in transit where the enzyme activity is reduced
sufficiently to commit the intermediate to the kinetic trap is not known but in part contributes to the branched nature of the pathway and
the ultimate fate of the complex. If, for example, RSL movement is
impeded, the enzyme may successfully complete the deacylation step and
escape before it is irreversibly trapped. This noninhibitory pathway yields an active proteinase and a cleaved, inactive
serpin. The ratio of serpin products (complex versus
cleaved) thus reflects a competition between the rate of ester
hydrolysis (k3 in Fig. 2) and that of loop
insertion (k4 in Fig. 2) to the point of
proteinase distortion. This ratio is signified also by the
stoichiometry of inhibition, which is defined as
(k3 + k4)/k4, i.e.
the number of moles of serpin needed to inhibit 1 mol of proteinase as
a kinetically trapped complex.
This mechanism accounts for the requirements for effective
inhibition by serpins, which include a critical RSL length, appropriate residues within the loop that are compatible with rapid and favorable burial into Dimerization and Higher Order Polymer Formation--
A negative
consequence of the need for a metastable conformation in the active
state is that natural mutations, either alone or in combination with
environmental factors, can promote inappropriate loop insertion. When
this occurs between the RSL of one molecule and the Understanding the biologic function of serpins remains an ongoing
challenge. For example, the biologic functions for many of the human
serpins involved in the clotting and fibrinolytic cascades are well
documented. However the role of human serpins in some other types of
biologic processes awaits further validation (Fig.
3).
Ov-serpins (B Clade)--
In 1993 amino acid
similarities among chicken ovalbumin (ov), PAI2 (SERPINB2), and MNEI
(SERPINB1) led to the identification of a subgroup of the serpin
superfamily (13). The N and C termini of the ov-serpins are shorter
than the prototypical serpin
Unlike ovalbumin itself, most ov-serpins reside intracellularly with a
cytoplasmic or nucleocytoplasmic distribution. However, several
ov-serpins (PAI2, megsin (SERPINB7), MNEI, maspin (SERPINB5), and the
SCCAs (SERPINB3 and -4)) may function extracellularly as they are
released from cells under certain conditions. Release may be
facilitated by an embedded, noncleaved hydrophobic N-terminal signal
sequence and appears to involve both conventional and non-endoplasmic reticulum-Golgi secretory pathways (15). Regardless of how ov-serpins are released from cells, those with RSL cysteine or methionine residues
are susceptible to oxidative inactivation and are likely to have a
limited half-life in the extracellular milieu.
With the possible exception of maspin, all human ov-serpins
are functional, competitive inhibitors of serine or cysteine
proteinases. Several members of the group inhibit more than one
proteinase, and dual reactive sites (utilization of more than one P1
residue) have been described for PI6 (SERPINB6), PI8 (SERPINB8), PI9,
SCCA1, SCCA2, and MNEI (for example see Ref. 16). However, the CD loops of the ov-serpins have the potential to interact with other proteins. For example, the CD loop of PAI2 is required for its cell survival function (17) and is a target for transglutamination (18). Bomapin
(SERPINB10; like the chicken ov-serpin, MENT, see below) carries a
nuclear localization signal in its CD loop that presumably interacts
with a nuclear importin (19).
The physiological functions of ov-serpins are still emerging. PAI2 may
play a role in the regulation of extracellular matrix remodeling
through the inhibition of uPA, as high PAI2 and low uPA levels
correlate with a positive prognosis in breast cancer (20). Also, PAI2
may have a structural role inside some cells (perhaps keratinocytes) as
suggested by its ability to spontaneously polymerize and undergo
transglutamination (21).
Many ov-serpins reside in proteinase-secreting cells (22). For example,
PI9, a potent inhibitor of granzyme B, is also present in cytotoxic
lymphocytes. Because PI9 can protect cells against granzyme B-mediated
apoptosis, it probably protects cytotoxic lymphocytes from
autodestruction due to misdirected granzyme B. A similar cytoprotective
role can be envisaged for PI6, PI8, MNEI, PAI2, and the SCCAs. In
addition, endogenous or exogenous ov-serpins may protect bystander
cells and tissue from proteolytic damage. Studies in rats show that
recombinant MNEI delivered to the airways prevents lung injury by
neutrophil proteinases and point to its potential in treating
inflammatory lung disease (23).
The ability of many ov-serpins to inhibit more than one proteinase and
their presence in epithelial cells suggest that they play a role in
barrier function or host defense against microbial or viral
proteinases. For example, PI9 inhibits Bacillus
subtilisin, and PI8 inhibits furin, a subtilisin-related enzyme (24,
25). Additional functions of ov-serpins include the regulation of: 1)
cell growth or differentiation, as exemplified by the role of megsin in
megakaryocyte differentiation (26), 2) tumor cell invasiveness and
motility, as shown by the inhibitory role of maspin in breast and
prostate tumors (27), and 3) angiogenesis (see below).
MENT--
Grigoryev et al. (28) isolated a novel
serpin, MENT, from the nuclei of terminally differentiated chicken
hematopoietic cells. MENT is an ov-serpin with a CD loop that contains
a nuclear localization signal, a lamin-like chromatin binding domain,
and an A-T hook DNA binding motif. The molecule has a relatively high pI (9 versus 5-6.5 for that of other serpins) with the
majority of positive charges clustering near the CD loop. Thus, MENT
appears to utilize the CD loop to bind tightly to nucleosomes with an apparent stoichiometry of 2:1. MENT is the major non-histone chromatin protein in differentiated nuclei and is concentrated in the
heterochromatin. MENT induces higher order chromatin compaction when it
is expressed ectopically in cells or added to isolated nuclei in
vitro. Although MENT contains a viable RSL, target proteinases
have yet to be identified.
Neuroserpin--
Neuroserpin, which inhibits tPA, uPA, trypsin,
and nerve growth factor
In a familial form of early onset dementia and encephalopathy, toxic
intraneuronal inclusions contained neuroserpin polymers. Molecular
analysis in two pedigrees revealed mutations (S49P and S52R) in the
B-helix (31). These mutations are similar to that seen in
Serpins and Alzheimer's Disease--
ACT (SERPINA3) and, to a
lesser extent, other serpins are found within the fibrillary amyloid
plaques of brains from patients with Alzheimer's disease, one of the
most common forms of dementia (reviewed in Ref. 32). Although the
pathogenesis of this disorder is complex, the extracellular
accumulation of A Pigment Epithelium-derived Factor and Other Serpins That May
Interfere with Angiogenesis--
PEDF (SERPINF1) is a secreted,
noninhibitory serpin that was isolated from retinal pigment epithelial
cells but is also detected in liver, lung, heart, spleen, brain, and
testis (6). This factor promotes the survival and differentiation of
retinal photoreceptors, cerebellar granule neurons, and spinal motor
neurons. Dawson et al. (33) show that PEDF inhibits
neovascularization of the rat cornea and endothelial cell migration
in vitro. In the cell migration assay, PEDF was as potent as
other angiogenesis inhibitors such as angiostatin, endostatin, and
thrombospondin-1. Moreover, PEDF antagonized the effects of the
angiogenesis inducers, VEGF, basic fibroblast growth factor,
platelet-derived growth factor, and interleukin 8. PEDF expression in
the eye increases with rising oxygen tension (just the opposite of
VEGF). Thus, VEGF and PEDF appear to counter-regulate blood vessel
growth in the eye by enhancing and antagonizing angiogenesis during
hypoxic and hyperoxic conditions, respectively.
PAI1, maspin, and RSL-cleaved ATIII (SERPINC1) have been shown to
interfere with angiogenesis in various assay systems (34-36). However,
it has yet to be determined whether any of these molecules are truly
involved in the physiologic or pathologic regulation of blood vessel growth.
Serpins and Host Defense--
A loss of function mutation in the
Drosophila serpin gene, Spn43Ac, leads to the
necrotic phenotype and constitutive expression of the antifungal
peptide, drosomycin (37). Normally activation of the antifungal pathway
involves proteolytic cleavage of the Toll (Tl)
ligand, spaetzle (spz). In turn, Tl activation
leads to an increase in both Spn43Ac and drosomycin synthesis
via the Rel-Cactus (NF- Plant Serpins--
The function of these proteins remains obscure.
Several studies show that plant serpins are capable of inhibiting
serine proteinase targets (38). However, with the exception of a
chymotrypsin-like proteinase identified in ragweed pollen, conventional
serine proteinase targets are absent in plants. BLAST searches of the
A. thaliana genome using the sequence of trypsin as a probe
failed to identify any classical chymotrypsin-like homologues. In
vivo studies by Yoo et al. (39) show that up-regulation
of the Cucurbita maxima Phloem Serpin-1 (CmPS-1) correlates
closely with the inability of the piercing sucking aphid Myzus
persicae to survive and reproduce on these plants, suggesting a
role for plant serpins in host defense.
Targeted Deletions of Mouse Serpins--
Several murine
orthologues of human serpins have been deleted by targeted mutation in
embryonic stem cells. Some of these mutations have failed to reveal an
overt phenotype, whereas others show physiologic and structural
alterations as well as embryonic lethality (see Supplemental Data,
Table C).
Viral Serpins--
Serpins are found within a number of genera
within the subfamilies of the vertebrate poxviruses and the
gammaherpesviruses (see Supplemental Data, Table D). To date, none of
the serpins are required for virus growth in cell culture. Within the
vertebrate poxvirus genera, each Orthopoxvirus (variola,
vaccinia, and rabbitpox) encodes three highly conserved serpins, SPI-1,
SPI-2/CrmA, and SPI-3. Each targets different types of proteinases
(Table D). The prototypic member of the Leporipoxvirus genus
(myxoma virus) also encodes three serpins, SERP1-3. Within the
Avipoxvirus genus, the fowlpox virus genome contains 5 serpin genes (Table D). Other vertebrate poxviruses (molluscum
contagiosum and ORF viruses) lack serpin genes. All genera of
poxviruses encode serpins with putative Asp P1 residues, and
the leporipoxviruses, orthopoxviruses, and fowlpox viruses all have a
member with a putative Arg P1 residue (Table D). Only the
orthopoxviruses have a serpin with a Phe at the putative P1
site. For more information on Orthopoxvirus and Leporipoxvirus serpins see Supplemental Data.
The serpins are a superfamily of genes that are distributed
throughout the metazoa and plantae kingdoms. Serpin family members are
identified by a conserved tertiary structure and a unique suicide
substrate-like inhibitory mechanism. Serpins reside both intracellularly and extracellularly and are involved in a diverse set
of biologic functions that extend beyond the ability of these molecules
to irreversibly inhibit target proteinases. The study of serpin
function using different biological platforms, such as the nematode
(40) and fruit fly, should help identify the role that these molecules
play in development, homeostasis, and host defense.
*
This minireview will be reprinted
in the 2001 Minireview Compendium, which
will be available in December, 2001.
b
To whom correspondence should be addressed: Dept. of
Pediatrics, Div. of Newborn Medicine, Children's Hospital,
Harvard Medical School, 300 Longwood Ave., Enders 970, Boston, MA 02115. E-mail: gary. silverman@tch.harvard.edu.
Published, JBC Papers in Press, July 2, 2001, DOI 10.1074/jbc.R100016200
The abbreviations used are:
SCCA1 or -2, squamous cell carcinoma antigen 1 or 2;
MINIREVIEW
The Serpins Are an Expanding Superfamily of
Structurally Similar but Functionally Diverse Proteins
EVOLUTION, MECHANISM OF INHIBITION, NOVEL FUNCTIONS,
AND A REVISED NOMENCLATURE*,
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INTRODUCTION
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INTRODUCTION
Serpin Structural Features:...
New Serpins and Novel...
Conclusions
REFERENCES
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Serpin Structural Features: Conformations, Inhibitory
Mechanism, and Polymerization
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INTRODUCTION
Serpin Structural Features:...
New Serpins and Novel...
Conclusions
REFERENCES
-sheets A, B, and C and at least 7
-helices (most typically have
9, lettered A-I; Fig.
1A). The RSL, which contains
the proteinase recognition site, is an exposed, flexible stretch of
~17 residues tethered between
-sheets A and C. Serpins can undergo
major structural rearrangements that involve alternative conformations
for the RSL,
-sheet A, and the attached strand 1 of
-sheet C. Considering only intramolecular structural changes, serpins can convert
to the more stable latent form (Fig. 1B). The RSL inserts
into the middle of
-sheet A to give a fully antiparallel
-sheet,
and s1C is extracted from
-sheet C to provide an exposed
"return" from the bottom of the serpin. Serpins in the latent
conformation are noninhibitory but can be converted back to the active
state by denaturation and refolding. The Tm for
unfolding of latent PAI1 (SERPINE1) is 17 °C higher than that for
the native state (reviewed in Ref. 6). The most stable state for
inhibitory serpins is the RSL-cleaved form, in which the RSL has fully
inserted into
-sheet A, as in the latent conformation, but without
the need to extract s1C from
-sheet C (Fig. 1C).
Estimates of the Tm for unfolding of such
conformations are >120 °C, compared with ~60 °C for the native
state (7).

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Fig. 1.
Serpin structures. From
left to right: A, native
1AT (Protein Data Bank (PDB) entry 1QLP); B,
latent ATIII (PDB entry 2ANT); C, cleaved
1AT
(PDB entry 7API); D, Michaelis complex between Serpin 1 (Alaserpin from Manduca sexta) and trypsin (PDB entry 1I99
(S. Ye, A. Cech, R. Belmares, E. J. Goldsmith, R. Bergstrom, D. Corey, and M. Kanost, submitted for publication)); and E,
covalent complex between
1AT and trypsin (PDB entry
1ezx). In all structures the A-sheet is in red, the B-sheet
is in green, the C-sheet is in yellow, and the
RSL(RCL) is in purple. The helices are in
gray and are labeled on the structure of native
1AT. Trypsin is shown as a cyan coil.
1AT
(SERPINA1) and trypsin (8) (Fig. 1E). This latter structure
represents the proteinase after it has been kinetically trapped in the
acyl-enzyme intermediate that forms normally along the peptide bond
cleavage pathway. Whereas the bound serpin is almost indistinguishable from that of the RSL-cleaved form (Fig. 1C), the proteinase
is grossly distorted (see below).
-sheet A and transport the covalently bound proteinase with it. Upon complete loop insertion the proteinase is translocated by over 70 Å, and its active site is distorted (Fig. 1E). The
alignment of the active site catalytic triad is altered by as much as 3 Å, and the P1 side chain is removed from the S1 pocket. Also, 40% of
the body of the proteinase shows no traceable electron density.
Proteinase distortion and hence inactivation results from compression
of the proteinase against the base of the serpin as a consequence of
the inserted RSL being just the right length. The energy needed to
effect the distortion may come from the much greater stability of the
cleaved loop-inserted conformation compared with the native-like
conformation. The net result of this conformational rearrangement is
kinetic trapping of the acyl intermediate due to slowing of the
deacylation steps of the normal substrate reaction by 6-8 orders of
magnitude (k5 in Fig. 2). Because of the small values for k5 (complex t1/2
hours to weeks), serpin-proteinase complexes in vivo
would bind to their receptors and be cleared (complex
t1/2
minutes) long before significant complex
decay could occur.

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Fig. 2.
Fate of the serpin and proteinase complex via
the branched pathway. The serpin (I) inhibition of
proteinase (E) proceeds via an initial noncovalent,
Michaelis-like complex (EI) that involves no conformational
change within the proteinase or the body of the serpin. Subsequent
peptide bond hydrolysis results in an acyl-enzyme intermediate
(EI#) that progresses to either a kinetically
trapped loop-inserted covalent complex (EI+,
inhibitory pathway) or a cleaved serpin (I*) and free proteinase
(noninhibitory or substrate pathway). The serpin body is in
yellow. Free serine proteinase is in green and
covalently bound proteinase is in red. Reprinted from Ref.
41 with permission from Cold Spring Harbor Laboratory.
-sheet A, and the presence of Ser in the
proteinase active site (6). Such a mechanism is adaptable to the
inhibition of cysteine proteinases by serpins, with the difference
being that the kinetically trapped intermediate is a thiol ester rather than an oxy ester. The detection of CrmA, a serpin that inhibits cysteine proteinases of the caspase family, in the loop-inserted cleaved conformation supports the feasibility of a common inhibitory mechanism (9), whereas the detection of an SDS-stable complex between
SCCA1 and cathepsin S (a cysteine proteinase of the papain family)
provides evidence for the formation of a stable, covalent thiol
ester-type linkage (3). The few convincing reports of reversible
inhibition, such as of single-chain uPA by PCI (SERPINA5) (10) or of
chymotrypsin by
2AP (SERPINF2) (11) may represent special cases in which unusual stabilization of the initial noncovalent Michaelis-like complex blocks progression to the substrate reaction.
-sheet of
another, dimers and higher order oligomers can result. Either through
depletion of active serpin or through pathological effects of the
polymers themselves, such aggregate formation can lead to disease. The
best characterized examples are the emphysema (serpin depletion) and
cirrhosis (intracellular inclusions) associated with loop-sheet
polymers of the Z or S variants of
1AT (12) (see
Supplemental Data, Fig. A) and the dementia associated with neuroserpin
(SERPINI1) inclusion bodies (see below).
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New Serpins and Novel Functions
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INTRODUCTION
Serpin Structural Features:...
New Serpins and Novel...
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REFERENCES

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Fig. 3.
Biological functions of human serpins.
Human serpins are involved in a diversity of biologic functions
(italics). For some serpins (red type), their
biologic functions appear to be related directly to proteinase
inhibition. For others (green type), their activity does not
require proteinase inhibition, or their role in the biologic process
has not been defined.
1AT, and they also lack a
classical secretory signal peptide. At present, there are 13 human
ov-serpins (see Supplemental Data, Table B). They map to 6p25 and 18q21
and fall into two classes based on a single difference in gene
structure (14). Like ovalbumin, many of the 18q21 serpin genes have an
exon encoding a polypeptide loop between helices C and D (CD loop) that
may contribute to accessory functions.
in vitro, is secreted from
neurons, glia, and neuroendocrine cells (29). Neuroserpin may play a
therapeutic role in protecting the brain from ischemic injury. In a rat
stroke model, neuroserpin expression was increased in neurons located
within the ischemic penumbra, and intracerebral injections of the
protein reduced the stroke volume by 64% and the number of apoptotic
cells by 50% (30).
1AT Siiyama, in which an S53F mutation facilitates
premature opening of
-sheet A and the formation of loop-sheet
polymers. In turn, these polymers precipitate and accumulate in the
cytoplasm until normal cellular function is disrupted.
-(1-42)-peptide fibrils may be neurotoxic by
binding to low density lipoprotein receptors and interfering with
cholesterol metabolism. ACT appears to facilitate fibril formation by
serving as a chaperone for the A
-(1-42)-peptide. The peptide
inserts into B-sheets A and C of ACT in which it assumes a
-strand
conformation. Upon RSL cleavage, A
-(1-42)-peptide is released into
the extracellular milieu, in which the
-strand peptide is
now more prone to polymerize.
B-I
B-like) pathway.
Spn43Ac appears to act in a negative feedback loop by inhibiting
proteinases that activate spz. Thus, the constitutive
expression of drosomycin and the necrotic phenotype appear to be
secondary to unregulated proteolytic activity.
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Conclusions
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INTRODUCTION
Serpin Structural Features:...
New Serpins and Novel...
Conclusions
REFERENCES
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FOOTNOTES
The on-line version of this article (available at
http://www.jbc.org) contains supplemental material and
includes references, Fig. A, and Tables A-D.
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ABBREVIATIONS
1AT,
1 antitrypsin (
1 proteinase inhibitor);
2AP,
2 antiplasmin;
A
, amyloid-
;
ACT,
1 antichymotrypsin;
ATIII, antithrombin III;
MNEI, monocyte-neutrophil elastase inhibitor;
ov, ovalbumin;
PAI1 or -2, plasminogen activator inhibitor type 1 or 2;
PEDF, pigment
epithelium-derived factor;
VEGF, vascular endothelial growth factor;
RSL, reactive site loop;
tPA, tissue plasminogen activator;
uPA, urokinase plasminogen activator.
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REFERENCES
TOP
INTRODUCTION
Serpin Structural Features:...
New Serpins and Novel...
Conclusions
REFERENCES
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