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J. Biol. Chem., Vol. 276, Issue 40, 36877-36880, October 5, 2001
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From the Department of Medicine and Department of Biochemistry, Canadian Institutes for Health Research Group in Membrane Biology, University of Toronto, Toronto, Ontario M5S 1A8, Canada
Received for publication, August 16, 2001, and in revised form, August 21, 2001
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ABSTRACT |
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The human multidrug resistance
P-glycoprotein (P-gp) interacts with a broad range of compounds
with diverse structures and sizes. There is considerable evidence
indicating that residues in transmembrane segments 4-6 and
10-12 form the drug-binding site. We attempted to measure the size of
the drug-binding site by using thiol-specific methanethiosulfonate
(MTS) cross-linkers containing spacer arms of 2 to 17 atoms. The
majority of these cross-linkers were also substrates of P-gp, because
they stimulated ATPase activity (2.5- to 10.1-fold). 36 P-gp mutants
with pairs of cysteine residues introduced into transmembrane segments
4-6 and 10-12 were analyzed after reaction with 0.2 mM MTS cross-linker at 4 °C. The cross-linked
product migrated with lower mobility than native P-gp in SDS gels. 13 P-gp mutants were cross-linked by MTS cross-linkers with spacer arms of
9-25 Å. Vinblastine and cyclosporin A inhibited cross-linking. The
emerging picture from these results and other studies is that the
drug-binding domain is large enough to accommodate compounds of
different sizes and that the drug-binding domain is "funnel"
shaped, narrow at the cytoplasmic side, at least 9-25 Å in the
middle, and wider still at the extracellular surface.
The human multidrug resistance P-glycoprotein
(P-gp)1 uses ATP to pump out
of the cell a wide variety of structurally diverse compounds (recently
reviewed in Ref. 1). Many of these compounds are clinically important
in cancer and AIDS chemotherapy (2-4). Therefore, overexpression of
P-gp often leads to multidrug resistance. The pattern of expression in
tissues and studies on P-gp knock-out mice indicate that its
physiological role may be to protect the organism from toxins in the
environment and in the diet (5-7).
P-gp is a member of the ABC (ATP-binding
cassette) family of transporters (8). Its 1280 amino acids
are organized in two repeating units of 610 amino acids that are joined
by a linker region of about 60 amino acids (9). Each repeat has six
transmembrane (TM) segments and a hydrophilic domain containing an
ATP-binding site (10, 11).
An important goal in determining the mechanism of P-gp is to understand
how P-gp can bind so many different compounds and how ATP hydrolysis
causes drug transport. The minimal functional unit in P-gp is a monomer
(12). Both nucleotide-binding sites are required for function, because
P-gp is inactive when ATP hydrolysis at either site in blocked by
mutation or chemical modification (13-18). The nucleotide-binding
domains may function in an alternating mechanism (19, 20).
Photolabeling and mutational studies indicate that the drug-binding
domain is within the TM domains (21-31). This is supported by the
finding that a deletion mutant lacking both nucleotide-binding domains
can still bind drug substrate (32). Drug binding requires both halves
of the TM domains, because drug-stimulated ATPase activity is only
observed when both halves are coexpressed (14).
Disulfide cross-linking studies have provided considerable
insight into the structure of membrane proteins (33-37). Recently, we
identified residues in TMs 4, 5, 6, 10, 11, and 12 that contribute to
the drug-binding domain (38-41). In this study, we used a series of
thiol-specific cross-linkers with spacer arms of various lengths to
measure distances between these residues.
Construction of Mutants--
There are seven
endogenous cysteines at positions 137, 431, 717, 956, 1074, 1125, and
1227 in wild-type P-gp. None of the cysteines are needed for activity,
because mutation of all cysteines to alanine (Cys-less P-gp) resulted
in an active molecule (10). The Cys-less P-gp cDNA was also
modified to code for ten histidine residues at the COOH end of the
molecule (Cys-less P-gp(His)10). The histidine tag
facilitated purification of the Cys-less P-gp by nickel-chelate
chromatography (42). Cysteine residues were then introduced into the
Cys-less P-gp(His)10 as described previously (40). The
integrity of the mutated cDNA was confirmed by sequencing the
entire cDNA (43).
Expression, Purification, and Measurement of Drug-stimulated
ATPase Activity--
Expression and purification of histidine-tagged
P-gp mutants were described previously (42). Briefly, 50 10-cm diameter culture plates of HEK 293 cells were transfected with the mutant cDNA. After 24 h, the medium was replaced with fresh medium
containing 10 µM cyclosporin A. Cyclosporin A is a
substrate of P-gp and is a powerful chemical chaperone for promoting
maturation of P-gp (44). The transfected cells were harvested 24 h
later, solubilized with 1% (w/v)
n-dodecyl-
The P-gp-(His)10 mutants were eluted from the column and
mixed with an equal volume of 10 mg/ml sheep brain
phosphatidylethanolamine (Type II-S; Sigma-Aldrich) that was washed
and suspended in 10 mM Tris-HCl, pH 7.5, and 150 mM NaCl. The P-gp:lipid mixture was then sonicated for
45 s at 4 °C. An aliquot of the mixture was assayed for
drug-stimulated ATPase activity by addition of an equal volume of
buffer containing 100 mM Tris-HCl, pH 7.5, 100 mM NaCl, 20 mM MgCl2, 10 mM ATP, and 2 mM MTS cross-linker. The samples
were incubated for 30 min at 37 °C, and the amount of inorganic
phosphate liberated was determined (45).
Cross-linking Analysis--
The mutant P-gps were expressed in
HEK 293 cells in the presence of 10 µM cyclosporin A. Membranes were prepared from transfected cells and suspended in
Tris-buffered saline (10 mM Tris-HCl, pH 7.4, 150 mM NaCl) and treated with 0.2 mM cross-linker
(Toronto Research Chemicals, Toronto, Ontario, Canada; see Fig. 1) for 15 min at 4 °C. At this concentration, the MTS cross-linkers
stimulated the ATPase activity of Cys-less P-gp by about 50%. The
reactions were stopped by addition of 2× SDS sample buffer containing
10 mM N-ethylmaleimide. In the protection
experiments, the membranes were pretreated for 10 min at 4 °C in the
presence of 1 mM vinblastine or 1 mM
cyclosporin A (saturating conditions). The samples were subjected to
SDS-PAGE on 7.5% acrylamide gels and immunoblot analysis with rabbit
polyclonal antibody (12).
To measure distances between residues in the NH2 and
COOH halves of the drug-binding domain, we constructed P-gp mutants
that had a pair of cysteine residues, one in the NH2 half
and the other in the COOH half (Table I).
The mutants were then tested for cross-linking with thiol-specific
cross-linkers. In attempting to measure distances between residues, it
would be most useful to use cross-linkers that had similar spacer arms
and reactive groups to minimize differences in chemical reactivity with
cysteines. A set of thiol-specific cross-linkers with these properties
is the MTS cross-linkers shown in Fig.
1. Alkylthiosulfonates react selectively
with cysteines in a protein resulting in a disulfide attachment of the
spacer arm and release of a sulfonic acid byproduct (46, 47). The MTS
compounds are generally more reactive with cysteines than other
thiol-specific compounds such as maleimides or iodoacetates (47).
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INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
![]()
EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
-D-maltoside, and the mutant P-gp
was isolated by nickel-chelate chromatography (Ni-NTA columns;
Qiagen, Inc., Mississauga, Ontario, Canada).
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RESULTS
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
Cross-linking with MTS cross-linkers

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Fig. 1.
Structures of the MTS cross-linkers.
The size of the spacer arms were calculated from the estimated
size of the chemical bonds (55).
In using cross-linkers to map distances in the drug-binding domain, it
is important that the compounds can actually occupy the drug-binding
site. It is best to be able to measure P-gp-mediated transport of these
MTS compounds. This is technically not feasible, because radioactive
forms are not available commercially. Another complication is the short
half-lives of MTS compounds in aqueous media (46), and they are
also not fluorescent. One way around these problems is to measure
stimulation of ATPase activity. Binding of most substrates to P-gp
stimulates its ATPase activity, and there is good correlation between
drug-stimulated ATPase activity and drug transport (48). Accordingly,
all the MTS cross-linkers (Fig. 1) were assayed for their ability to
stimulate Cys-less P-gp ATPase activity. Cys-less P-gp has all seven
endogenous cysteines replaced with alanine and is nearly as active
(drug transport and drug-stimulated ATPase activity) as wild-type P-gp
(10, 42). Fig. 2 shows the stimulation of
Cys-less P-gp ATPase activity in the presence of saturating
concentrations (2 mM) of each MTS cross-linker. All the
compounds, except M3M, stimulated the ATPase activity of Cys-less P-gp.
The most potent stimulators of activity were M6M and M8M (about
10-fold). Relatively lower levels of stimulation were observed with
M5M, M11M, M14M, and M17M (6- to 8-fold), whereas M2M and M4M
stimulated activity 2.5- to 3.5-fold. In general, the best stimulators
of activity were compounds with spacer arms of intermediate lengths (10 to 13 Å). For comparison, verapamil, the best stimulator of P-gp
activity, stimulates Cys-less P-gp activity about 14-fold, whereas the
substrate vinblastine stimulates activity about 6-fold (41). The
results show that most of the MTS cross-linkers can occupy the
drug-binding site of P-gp.
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Recently, we used dibromobimane (38-40) and MTS-verapamil (41) to show that cysteines introduced at positions 222(TM4), 306(TM5), 339(TM6), and 342(TM6) in the NH2 half of P-gp and at 868(TM10), 871(TM10), 872(TM10), 942(TM11), 945(TM11), 975(TM12), 982(TM12), 984(TM12), and 985(TM12) in the COOH half of P-gp contribute to the drug-binding domain (40). To test for cross-linking, mutants with one cysteine in the NH2 half (positions 222, 306, 339, and 342) and another in the COOH half (positions 868, 871, 872, 942, 945, 975, 982, 984, and 985) were made (Table I). The mutants were first expressed in HEK 293 cells and were found to be processed to the fully mature (170 kDa) form of P-gp (data not shown).
The 36 mutants (Table I) were then subjected to cross-linking by the
MTS cross-linkers (Fig. 1). Membranes were prepared from transfected
cells and treated with different cross-linkers (0.2 mM) at
4 °C. The reactions were done at 4 °C to reduce molecular motions
in the protein. The reactions were stopped by addition of SDS sample
buffer containing N-ethylmaleimide, and the mixture was
analyzed by SDS-PAGE. In previous studies we had shown the cross-linking between residues in the NH2 and COOH halves
of P-gp resulted in the cross-linked product migrating with lower
mobility in SDS gels (49, 50). Similarly, cross-linking by MTS
cross-linkers resulted in decreased mobility of the cross-linked
protein. Cross-linked product was detected in 13 mutants.
Representative positive (mutant I306C/V982C) and negative (mutant
I306C/A871C) results are shown in Fig. 3.
In mutant I306C/V982C, strongest cross-linking was observed with M14M
(20.8 Å) and M17M (24.7 Å). Cross-linking was also observed with M8M
(13 Å) and M11M (16.9 Å). No evidence of cross-linking was observed
with the smaller cross-linkers M2M to M6M (5.2 to 10.4 Å).
Cross-linking of mutant I306C/V982C was reversible, because the
cross-linked product was not detected after treatment with 5 mM dithiothreitol (data not shown).
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We then tested whether drug substrates could inhibit cross-linking. If cross-linking occurred between residues in the drug-binding domain, then the presence of substrates such as cyclosporin A and vinblastine should inhibit cross-linking. Cyclosporin A is an inhibitor of P-gp-medicated drug resistance (51) whereas vinblastine is a cytotoxic drug substrate (1). The membranes containing P-gp mutant I306C/V982C were preincubated with 1 mM cyclosporin A or 1 mM vinblastine for 10 min at 4 °C. The samples were then treated with M17M and subjected to Western blot analysis. Fig. 3 shows that cyclosporin A and vinblastine blocked cross-linking of mutant I306C/V982C by M17M. An example of a blot showing no detectable cross-linking is seen in mutant I306C/A871C (Fig. 3, lower panel).
The cross-linking results of the other mutants (data not shown) are summarized in Table I. Two of the nine S222C(TM4) mutants were cross-linked. Mutant S222C(TM4)/I868C(TM10) was cross-linked with M5M, M6M, M8M, and M17M, whereas mutant S222C(TM4)/G872C(TM10) was cross-linked with M5M, M6M, and M17M.
Only five of the nine I306C(TM5) mutants could be cross-linked. Mutants I306C(TM5)/I868C(TM10) and I306C(TM5)/G872C(TM10) were cross-linked with M8M and M17M. Mutant I306C(TM5)/T945C(TM11) was cross-linked with M8M, M11M, and M17M. Mutants I306C(TM5)/V982C(TM12) and I306C(TM5)/G984C(TM12) were cross-linked with M8M, M11M, M14M, and M17M.
Six L339C(TM6) mutants were cross-linked. Mutant
L339C(TM6)/F942C(TM11) was cross-linked with only M17M. Mutants
L339C(TM6)/T945C(TM12) and L339C(TM6)/A985C(TM12) were cross-linked
with M14M and M17M, mutant L339C(TM6)/V982C(TM12) was cross-linked with
M11M, M14M, and M17M, whereas mutants L339C(TM6)/I868C(TM10) and
L339C(TM6)/G872C(TM10) were cross-linked with M8M, M11M, M14M, and
M17M. No cross-linking was detected with the A342C(TM6) mutants. All
cross-linking was blocked when the membranes were preincubated with 1 mM vinblastine, 1 mM cyclosporin A. Similarly,
no cross-linked product was detected after treatment with
dithiothreitol (data not shown).
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DISCUSSION |
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The cross-linking results in Fig.
4A show that residues
222(TM4), 306(TM5), 339(TM6), 868(TM10), 872(TM10), 942C(TM11),
945(TM11), 982(TM12), 984(TM12), and 985(TM12) must line a common
drug-binding site. Residues in TMs 5 and 6 were cross-linked to
residues in TMs 10, 11, and 12, whereas residue S222C(TM4) was
cross-linked with two residues (I868C and G872C) in TM10. In all cases,
cross-linking was blocked by substrates such as vinblastine or
cyclosporin A. Vinblastine and cyclosporin are quite large molecules.
Their crystal structures show that they are about 20-25 Å in length
at their widest point (52, 53). The cross-linking results indicate that
the drug-binding site would be large enough to accommodate vinblastine
or cyclosporin A. For example, mutants L339C(TM6)/F942C(TM11), L339C(TM6)/T945C(TM11), and L339C(TM6)/A985C(TM12) are only
cross-linked with MTS compounds with spacer arms of more than 20 Å.
The smallest distance between TMs 4, 5, and 6 and TM 10, 11, and 12 as
measured by these cross-linkers is about 9 Å and occurs between TMs 4 and 10, because mutants S222C(TM4)/I868C(TM10) and
S222C(TM4)/G872C(TM10) could be cross-linked with M5M. It is
interesting to note that none of the 36 mutants (Table I) showed any
detectable cross-linking with a zero-length cross-linker (copper
phenanthroline) at either 22 or 4 °C (data not shown).
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It was surprising to find mutants such as the S222C mutants that were cross-linked with smaller reagents (e.g. M8M) were also cross-linked with the larger M17M cross-linker. One explanation is that the TMs of P-gp are quite flexible (54) and therefore, can expand or contract to accommodate different sizes of substrate. This mobility of the helices in accommodating different substrates would inherently expose different residues to the drug-binding site and thereby dictate the affinity of P-gp for a particular substrate. It is also possible that the reactive cysteines may be in a sterically favored position to react with cross-linker of a certain size. This may indeed be the case. Table I show that some but not all of the mutants react with the same combination of MTS cross-linkers. Similarly, no cross-linking was detected in 23 of the mutants. Another possibility is that M17M may be a particularly flexible reagent. Recently, Green et al. (55) reported that a potential problem with using homobifunctional protein cross-linking agents as molecular rulers is that they can be quite flexible. These compounds can adopt a range of conformations due to rotation of the bonds that form the linker arm. There are several C-O bonds in the spacer arm of M17M that could adopt gauche conformations, thereby bringing the two reactive ends closer together. Thus, it is possible that some mutants are reacting with M17M when it is in conformations that bring the reactive groups closer together, whereas other mutants would react only with the M17M when it is in the extended conformation.
The residues that have been identified to contribute to the drug-binding site are in the middle of the predicted TM segments and to be 9-25 Å apart (Fig. 4B). Previous studies have shown that the cytoplasmic side of the TMs (4-6 and 10-12) predicted to line the drug-binding site are closer than this, because disulfide cross-linking occurred between residues in these TMs with a zero-length cross-linking agent (copper phenanthroline) (54). The TM segments on the extracellular surface, however, must be quite far apart. A low resolution crystal structure of P-gp shows the presence of a pore of about 50 Å in diameter on the extracellular surface (56).
The emerging picture of P-gp is shown in a cross-sectional view in Fig.
4B. In this model, the drug-binding domain appears to be a
"funnel" shape, with the widest point at the extracellular side and
the narrowest at the cytoplasmic side. Drug binding would occur close
to the center of the pore. ATP hydrolysis would change the affinity of
P-gp for substrate through conformational changes in the drug-binding
domain by rotation (57) and possibly large movements of helices (50).
ATPase activity is inhibited if conformational changes are prevented by
cross-linking of the TM segments (50, 57). These movements would result
in expulsion of the drug substrate and closing of the extracellular
side of the pore.
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ACKNOWLEDGEMENTS |
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We thank Dr. Randal Kaufman (Boston, MA) for pMT21 and Claire Bartlett for assistance with tissue culture.
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FOOTNOTES |
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* This work was supported in part by National Institutes of Health Grant RO1 CA80900 and by grants from the Canadian Institutes for Health Research (CIHR) and the Canadian Cystic Fibrosis Foundation.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Investigator of the CIHR. To whom correspondence should be
addressed: Dept. of Medicine, Rm. 7342, Medical Sciences Bldg., 1 King's College Circle, University of Toronto, Toronto, Ontario M5S 1A8, Canada. Tel./Fax: 416-978-1105.
Published, JBC Papers in Press, August 22, 2001, DOI 10.1074/jbc.C100467200
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ABBREVIATIONS |
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The abbreviations used are: P-gp, P-glycoprotein; MTS, methanethiosulfonate; TM, transmembrane; PAGE, polyacrylamide gel electrophoresis; HEK, human embryonic kidney; M2M, 1,2-ethanediyl bismethanethiosulfonate; M3M, 1,3-propanediyl bismethanethiosulfonate; M4M, 1,4-butanediyl bismethanethiosulfonate; M5M, 1,5-pentanediyl bismethanethiosulfonate; M6M, 1,6-hexanediyl bismethanethiosulfonate; M8M, 3,6-dioxaoctane-1,8-diyl bismethanethiosulfonate; M11M, 3,6,9-trioxaundecane-1,11-diyl bismethanethiosulfonate; M14M, 3,6,9,12-tetraoxatetradecane-1,14-diyl bismethanethiosulfonate; M17M, 3,6,9,12,15-pentaoxaheptadecane-1,17-diyl bismethanethiosulfonate.
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