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J. Biol. Chem., Vol. 276, Issue 42, 38582-38587, October 19, 2001
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From the Department of Biochemistry, University of Kentucky, Chandler Medical Center, Lexington, Kentucky 40536-0084
Received for publication, July 20, 2001, and in revised form, August 9, 2001
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ABSTRACT |
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Members of the phosphoprotein phosphatase
family of serine/threonine phosphatases are thought to exist in
different native oligomeric complexes. Protein phosphatase 2A (PP2A) is
composed of a catalytic subunit (PP2Ac) that complexes with an A
subunit, which in turn also interacts with one of many B subunits that regulate substrate specificity and/or (sub)cellular localization of the
enzyme. Another family member, protein phosphatase 5 (PP5), contains a
tetratricopeptide repeat domain at its N terminus, which has been
suggested to mediate interactions with other proteins. PP5 was not
thought to interact with partners homologous to the A or B subunits
that exist within PP2A. However, our results indicate that this may not
be the case. A yeast two-hybrid screen revealed an interaction between
PP5 and the A subunit of PP2A. This interaction was confirmed for
endogenous proteins in vivo using immunoprecipitation analysis and for recombinant proteins by in vitro binding
experiments. Our results also indicate that the tetratricopeptide
repeat domain of PP5 is required and sufficient for this interaction.
In addition, immunoprecipitated PP5 contains associated B subunits.
Thus, our results suggest that PP5 can exist in a PP2A-like
heterotrimeric form containing both A and B subunits.
The reversible phosphorylation of proteins, catalyzed by protein
kinases and phosphatases, is a major mechanism for regulating many
cellular processes, including intermediary metabolism, cell cycle
progression, DNA replication, transcription, and protein translation
(1-3). It is estimated that one-third of all cellular proteins undergo
reversible phosphorylation, which cells utilize to regulate the
functional properties of key regulatory proteins involved in specific
pathways (4).
Based on homology of amino acid sequences and the similarity of
three-dimensional structures, phosphoprotein phosphatases (PPPs)1 are divided into
three families designated PPP, PPM, and PTP (5, 6). The PPP and PPM
families are comprised of phosphoserine- and phosphothreonine-specific
enzymes, whereas the PTP family is comprised of
phosphotyrosine-specific and/or dual specificity phosphatases. As
suggested by the name, dual specificity phosphatases can
dephosphorylate all three phosphoresidues (7). Protein phosphatase 2A
(PP2A) together with PP1, PP2B (calcineurin), PP4, PP5, PP6, and PP7
are classified in the PPP family (4).
PP2A exists as a heterotrimer composed of a catalytic subunit (PP2Ac),
an A subunit (also known as PR65), and a B subunit. There are three
major families of B subunits, PR55/B, PR61/B', PR72/B", with multiple
isoforms within each family (4-6, 8). The association of PP2Ac with
different B subunits modulates the activity, substrate specificity,
and/or (sub)cellular location of the holoenzymes, enabling them to
control numerous cellular functions (3, 4, 9, 10).
Protein phosphatase 5 (PP5), another member of the PPP family of
phosphatases, differs from the other serine/threonine phosphatases in
that it contains regulatory and (sub)cellular targeting functions within a single polypeptide chain. Its C-terminal catalytic domain is
related to those of PP1, PP2A, and PP2B, but its N-terminal domain
consists of three tetratricopeptide repeats or TPRs that are missing
from these other PPP family members (11, 12). TPR domains consist of a
series of antiparallel amphipathic We have been characterizing an interaction between the A subunit of
PP2A and a member of the heat shock transcription factor family, heat
shock factor 2 (HSF2) (17, 18). Our data suggests that HSF2 competes
with PP2Ac by binding to the same region of the A subunit and that HSF2
may represent a new type of PP2A regulatory protein. As a means to
identify other potential regulators of PP2A that function by this
mechanism, we screened a yeast two-hybrid library using the C-terminal
region of the A subunit as a bait. One of the A subunit-interacting
clones identified by this screen was a polypeptide encoding the TPR
domain of PP5.
In this present study, we began to characterize the mechanistic and
structural basis for the interaction between the PP2A A subunit and
PP5. We confirmed that endogenous PP5 and A subunit interact in
vivo using immunoprecipitation analysis, as well as in
vitro using recombinant proteins. Our results indicate that the
tetratricopeptide repeat region of PP5 is sufficient for this interaction. We also found that the sequence surrounding the loop region of HEAT repeat 11 within the A subunit, which was previously shown to be important for binding to PP2Ac and HSF2, is also important for interaction with PP5 (18, 19). Furthermore, we found that PP5
associates with B subunits in vivo, indicating that PP5
exists in a heterotrimeric form reminiscent of the PP2A enzyme.
Yeast Two-hybrid Screening--
The bait construct containing
PR65(205-589) (17) was made in pGBD-C1 using standard
subcloning methodologies. PR65(205-589) fused to the GAL4
DNA-binding domain was introduced into yeast strain pJ69-4A (20). The
resulting strain was then transformed with a mouse whole embryo
cDNA library (21). Screening was performed as described previously
(17). In subsequent analysis, two-hybrid constructs for full-length
PP5, TPR domain, and PP5 catalytic domain (lacking TPR domain) were
made in the "target" vector pGAD-C2 and tested for ability to
interact with the bait construct pGBD-PR65(205-589) in the
two-hybrid assay. Empty target vector pGAD-C2 was tested as a negative
control with this bait. To measure levels of wild type and mutant PR65
fusion constructs in the yeast transformed with these constructs,
extracts of these yeast were subjected to SDS-PAGE and Western blot
analysis using anti-PR65 antibodies (Santa Cruz).
Cell Lines--
The HeLa (ATCC) cell line was cultured at
37 °C with 5% CO2 in Dulbecco's modified Eagle's
medium supplemented with 10% fetal calf serum, 2 mM
L-glutamine, 4.5 g/liter L-glucose, and 50 µg/ml gentamycin.
Immunoprecipitation Analysis--
Extracts of HeLa cells made in
RIPA buffer (50 mM Tris-HCl, pH 8.0, 150 mM
NaCl, 1% Nonidet P-40, 0.5% deoxycholate, 1 mM dithiothreitol, complete protease inhibitor mixture (Roche)) were incubated with 5 µg of PP5 mouse monoclonal antibody (Transduction Laboratories) for 1 h at 4 °C with gentle inversion mixing.
Protein G-agarose was added and allowed to incubate for 1 h at
4 °C with gentle mixing. After collecting by centrifugation, the
complexes were washed two times with RIPA buffer. The bound proteins
were then analyzed by SDS-PAGE and Western blot using anti-PR65 (Santa Cruz) or anti-B subunit antibodies (generously provided by Dr. Brian Wadzinski, Department of Molecular Physiology and Biophysics, Vanderbilt University). The sequential immunoprecipitations were performed similarly using antibodies against PR65, PP5, or B", except
that two rounds of immunoprecipitation were employed. The supernatant
remaining after the two rounds was concentrated by trichloroacetic
acid precipitation and along with samples of pellet 1 and pellet
2 was analyzed by SDS-PAGE and Western blot as described above. The
amount of input total protein used for each of the three
immunoprecipitations was 1794 µg (lysate divided in three parts), 20 µg of this extract was loaded in the lanes marked WCE, and
the amounts of protein remaining after the A subunit, PP5, and B" two
sequential immunoprecipitations was 1718, 1681, and 1708 µg,
respectively. Aliquots of these samples were also run on SDS-PAGE and
probed with the antibodies used for the immunoprecipitation to measure
the amount of immunoprecipitated protein in each lane.
Expression of Recombinant Proteins and GST Pull-down
Assay--
PP5 and TPR were subcloned into pQE30 (Qiagen) to make
His6 fusion proteins, while PR65(205-589) was
subcloned into pGEX2T (Amersham Pharmacia Biotech) to make a GST
fusion protein. The constructs, along with GST alone, were expressed in
bacteria and purified according to the manufacturer's instructions.
GST (4 µg) or GST-PR65(205-589) (1 µg) were then bound
to glutathione-agarose beads and then incubated with
His6-TPR (3.5 µg) or His6-PP5 (3.5 µg) for
1 h at 4 °C in Buffer D (20 mM HEPES, pH 7.9, 0.2 mM EDTA, 0.1 M KCl, 20% v/v glycerol) in a
total volume of 115 µl. After washing four times with Buffer D, bound
TPR or PP5 was analyzed by SDS-PAGE and Western blot using
anti-His6 (CLONTECH) or anti-PP5/PPT (Transduction Laboratories), respectively.
Plasmids--
A bait construct containing full-length human A
subunit (PR65) was made in pGBD-C1 using standard subcloning
methodologies. 5' and 3' truncation mutants were made by performing
restriction digestion of selected unique sites, filling in with Klenow,
and then ligating to delete the sequences. The sites utilized were BglII (pGBD-PR65(1-325)), Bsu36I
(pGBD-PR65(1-387)), BglII
(pGBD-PR65(325-589)). 3' truncation mutants of human PR65(205-589) were generated using exonuclease III
deletion as described previously (18).
Site-directed Mutagenesis and
For analysis of To identify potential PP2A regulatory proteins, a mouse whole
embryo cDNA library was screened using a C-terminal portion of the
A subunit of PP2A (PR65(205-589)) as the bait (Fig. 1A) (20-22). This truncated
form of the A subunit does not contain the region responsible for
binding the B subunits, and thus we were able to focus on identifying
proteins that bind to the C-terminal region of the A subunit. One of
the positives identified was a clone containing an N-terminal portion
of PP5 comprising amino acids 7-139, which will hereafter be referred
to as TPR(7-139) (Fig. 1B) (12). Interestingly,
this portion of PP5 contains most of the TPR domain of this protein.
The domain organization of PP5 relative to PP2Ac, which lacks these
N-terminal TPR repeats, is shown in Fig. 1C.
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INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
helices that bundle together
through hydrophobic interactions to form a cradle-shaped binding groove
(13). Tetratricopeptide repeats are found not only in PP5, but also in
a variety of unrelated proteins, and are thought to serve both
targeting and regulatory functions. The TPR domain of PP5 interacts
with a number of proteins, including the atrial natriuretic peptide
receptor, Cdc 16p, and Cdc 27p (11, 14). PP5 also interacts with heat
shock protein 90 in complexes with glucocorticoid receptors, and it has
been demonstrated that overexpression of the TPR domain of PP5 blocks glucocorticoid-induced gene transcription (15, 16). Thus, PP5 has
distinctive biochemical and biological properties because of its
N-terminal TPR domain.
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EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
-Galactosidase
Assay--
Single amino acid substitutions within the A subunit (PR65)
protein were made using the Stratagene QuikChange Mutagenesis Kit.
Using the following mutagenic primers (bold indicates the altered
nucleotides, and only the sense primer is indicated). All of the
mutations were confirmed by DNA sequencing: PR65 (E413A), 5'-GTGGAGCTGGCTGCGGACGCCAA- GTGG-3'; PR65 (D414A),
5'-GAGCTGGCTGAGGCGGCCAAGTGGCGG-3'; PR65 (A415Y),
5'-CTGGCTGAGGACTACAAGTGGCGGGTG-3'; PR65 (K416A), 5'-GCTGAGGACGCCGCGTGGCGGGTGCGG-3'; PR65 (W417A),
5'-GAGGACGCCAAGGCGCGGGTGCGGCTG-3'; PR65- (R418A),
5'-GACGCCAAGTGGGCGGTGCGGCTGGCC-3'; PR65 (L421A),
5'-TGGCGGGTGCGGGCGGCCATCATTGAG-3'.
-galactosidase activity in yeast harboring
two-hybrid constructs, yeast extracts were incubated with Z Buffer (60 mM Na2HPO4 and 40 mM
NaH2PO4, pH = 7.0, 10 mM KCl,
1 mM MgSO4, 50 mM
-mercaptoethanol). After addition of 4 mg/ml
o-nitrophenyl-
-D-galactoside substrate,
samples were incubated at 30 °C for ~30-45 min and then the
A420 was measured.
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RESULTS
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

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Fig. 1.
Interaction between the A subunit of PP2A and
PP5 in yeast two-hybrid assay. A, depiction of
full-length pGBD-PR65 and pGBD-PR65(205-589), the
"bait" used to perform the yeast two-hybrid library screen.
B, schematic representation of full-length PP5 and the
region found to interact during the yeast two-hybrid library screen.
C, schematic representation of full-length PP5
versus full-length PP2Ac. Areas highlighted include the
catalytic domains, which are 40% identical and 60% similar in amino
acid composition, and the TPR region of PP5.
To further characterize this interaction, a full-length clone of PP5,
as well as the N-terminal TPR domain (comprising amino acids 1-159),
the original PP5 partial clone (TPR(7-139)), and the
C-terminal catalytic domain of PP5 (Cat), were tested for their ability
to interact with PR65(205-589) using the yeast two-hybrid
assay. Yeast transformed with the A subunit bait PR65(205-589) + PP5 as well as those transformed with
PR65(205-589) + TPR(1-159) or
PR65(205-589) + TPR(7-139) all grew on
selective media, indicating the existence of an interaction (Fig.
2). Yeast transformed with the A subunit
bait PR65(205-589) + Cat,
PR65(205-589) + empty target vectors pGAD-C2 or pVP16, as
well as those transformed with the empty bait vector (pGBD) and the
aforementioned target constructs, all failed to grow on selective media
(Fig. 2). These results support the hypothesis that the TPR domain of
PP5 interacts with the A subunit of PP2A.
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To determine whether endogenous PP5 and A subunit proteins interact, we
immunoprecipitated PP5 from extracts of HeLa cells followed by Western
blot using anti-A subunit antibodies. As a negative control we also
subjected these extracts to immunoprecipitation using nonspecific mouse
IgG antibodies and probed for A subunit. The results indicate that PP5
is found in a complex with A subunit in vivo (Fig.
3A), while little or no A
subunit was immunoprecipitated by the negative control IgG antibodies.
To determine the proportion of total endogenous cellular PP5 and A
subunit that are associated, we subjected extracts of HeLa cells to
sequential immunoprecipitations. To measure the efficiency of
immunoprecipitation we also subjected each of these samples to Western
blot using the antibody used to immunoprecipitate. The results of the A
subunit immunoprecipitation (Western probed for PP5) indicate that a
significant proportion of cellular PP5 does appear to immunoprecipitate
with A subunit in the two sequential immunoprecipitations (Pellet 1 (P1) and Pellet 2 (P2)) (Fig. 3B). A
fraction of PP5 does appear in the supernatant (lane marked
"S"), but so does a fraction of the cellular PR65 (see
lower panel), indicating that our immunoprecipitation was
not able to pull down all of this protein, possibly due at least in
part to the association of PR65 with cellular substructures such as
microtubules. Thus it is unclear whether this fraction of PP5 remaining
in the supernatant is complexed with A subunit or not.
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The reverse experiment, in which PP5 antibodies were used in two sequential immunoprecipitations followed by Western blot using A subunit antibodies, reveals that while some of the cellular A subunit clearly immunoprecipitates with PP5 (most in the first immunoprecipitation (IP)-Pellet 1 (P1)) a substantial proportion remains in the supernatant and thus appears not to be associated with PP5 (Fig. 3C). This is expected as a large proportion of cellular A subunit is associated with PP2A catalytic subunit and thus would not be immunoprecipitated by PP5 antibodies.
As a complementary approach we also tested the ability of recombinant
PP5 and A subunit proteins to interact in vitro using a GST
pull-down assay. GST or GST-PR65(205-589) were bound to
glutathione-agarose, incubated with purified recombinant
6xHis-TPR(1-159) or 6xHis-PP5, and washed extensively. The
binding of 6×His-PP5 or 6×His-TPR(1-159) was then
measured by Western blot analysis using either PP5 antibodies or 6×His
antibodies, respectively. The results of this experiment demonstrate
that both PP5 (Fig. 4A) and
its TPR domain (Fig. 4B) interact in vitro with
recombinant A subunit, but not with GST alone. Similar interactions
with PP5 and TPR domain were observed using GST fusion proteins
containing full-length A subunit (data not shown). These data provide
additional evidence of the PP5-A subunit interaction and support the
hypothesis that the TPR domain of PP5 is the region responsible for
interacting with the A subunit.
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To better understand the interaction between PP5 and the A subunit, we
determined the regions within the A subunit polypeptide that are
important for this interaction by constructing 3' truncation mutants of
full-length A subunit and testing their ability to interact with
TPR(7-139) in the yeast two-hybrid system. The results
demonstrate that 3' truncation mutants of the A subunit that terminate
at amino acids 378 and 325 are unable to interact with
TPR(7-139) (Fig.
5A). We also tested 3'
truncation mutants of the portion of the A subunit
(PR65(205-589)) used as bait during the initial library
screen. We found that 3' truncation mutants that terminate at amino
acid 426 were able to interact with TPR(7-139), but that
further deletion to amino acid 408 rendered this protein unable to
interact (Fig. 5A). Finally, we tested a 5' truncation
mutant of full-length A subunit that begins at amino acid 325 and found
that it too was unable to interact with TPR(7-139) (Fig.
5A). These results suggest that the region within the A
subunit between amino acids 205 and 426 is important for interaction
with the TPR domain of PP5 (Fig. 5B).
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As indicated in Fig. 5B, amino acids 205-426 of the A
subunit overlap the region of this protein previously shown to be
involved in interacting with PP2Ac (amino acids 408-426) (19, 23). Interestingly, the region of overlap contains a loop region in HEAT
repeat 11 of the A subunit that we and others have demonstrated to be
important for interaction with PP2Ac (18, 19). This prompted us to
speculate that amino acids within this loop region of the A subunit may
also be important for interaction with the TPR domain of PP5. To test
this hypothesis we analyzed point mutants within this region for their
ability to interact with the TPR domain of PP5 in the yeast two-hybrid
assay, as measured by
-galactosidase activity in yeast extracts. The
mutations made were all alanine substitutions except for alanine 415, which was changed to tyrosine to determine the effect of substituting a
bulky side chain for the small alanine side chain. As shown in Fig.
6A, mutations of aspartic acid
414 (D414A) and leucine 421(L421A) resulted in a small reduction in
-galactosidase activity relative to wild type A subunit, suggesting
that these residues could be involved in the interaction with the TPR
domain of PP5. Somewhat to our surprise, mutation of four other
residues led to either a moderate (E413A) or large (K416A, W417A,
R418A) increase in
-galactosidase activity. We postulate that the
side chains of these particular residues in this region of the A
subunit are deleterious to its interaction with the TPR domain, perhaps
because of steric or ionic repulsions between them and groups in the
TPR domain that are then relieved when these side chains are changed to
that of alanine. The A415Y mutation resulted in only a small increase
in
-galactosidase activity. To rule out the possibility that
significant differences in expression of any of the mutants in yeast
could account for differences in
-galactosidase activity we
observed, we performed Western blot of yeast containing each of the A
subunit constructs with A subunit antibodies and did not observe any
large differences in levels that could account for the results (Fig.
6B), which are summarized in Fig. 6C.
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The PP2A heterotrimer contains a B subunit that associates with the
N-terminal domain of the A subunit. Our finding that PP5 interacts with
the A subunit prompted us to examine whether this complex also contains
a B subunit. To test this hypothesis we immunoprecipitated PP5
complexes from extracts of HeLa cells and probed Western blots of the
immunoprecipitate with antibodies that recognize different B subunits.
As shown in Fig. 7A, we found that a member of the B" family, PR72, immunoprecipitates with PP5. A
control IgG does not immunoprecipitate this protein, indicating specificity. We were unable to detect any B subunit isomers from the
PR55/B or PR56/B' family (data not shown). Sequential
immunoprecipitation analysis of this association of B" with PP5
revealed that, similar to what was observed for the proportion of
cellular A subunit associated with PP5 and consistent with our
expectation (see Fig. 3C), while we can clearly detect a
fraction of B" associated with PP5 (Pellet 1 (P1)) there
remains a large fraction of B" not associated with PP5 (supernatant
(S)) (Fig. 7B), even though the
immunoprecipitation appears to have efficiently pulled down the B"
protein in the extracts (lower panel). Again, this is
consistent with the expectation that a substantial portion of B" is
found in PP2A heterotrimers in the cell and is not associated with this
complex. It is also possible that other B subunits besides those we
tested are associated in some A subunit-PP5 complexes. However,
our results do suggest that the "PP5-A subunit heterodimer"
associates with at least one B subunit in vivo to form novel
heterotrimeric complexes containing PP5, A subunit, and a B
subunit.
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DISCUSSION |
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Based on our results, we propose that PP5 can exist in a native
complex in vivo with the A subunit of PP2A and a B subunit, like that of the PP2A heterotrimer (Fig.
8). Our data also suggest that PP5 binds
to the A subunit via its N-terminal TPR domain, although it is possible
that contacts between the catalytic domain of PP5 and the A subunit may
also contribute to this interaction.
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Eukaryotic cells express a large number of different protein kinases. However, the number of genes encoding protein phosphatases is limited and does not appear to equal the diversity of the protein kinases. Furthermore, it has been estimated that approximately one-third of all cellular proteins undergo reversible phosphorylation. A major question, then, is how such a limited number of dephosphorylating enzymes can counterbalance the action of so many protein kinases. The idea has developed that proteins that regulate protein phosphatases are key players in determining the properties of the enzyme. Our data may help answer this question as it suggests a "modular" design of phosphatases in the PPP family such that one catalytic subunit can be replaced by another. This could represent one mechanism for generating diversity of function among this family of protein phosphatases.
Our data also illustrate the fact that TPR domains and HEAT domains can
interact. These two domains, both of which are involved in
protein-protein interactions, are structurally similar in that they are
both composed of antiparallel amphipathic
helices (24). However,
TPR motifs generate extended surface grooves, while surface grooves are
not a feature of tandem HEAT repeats (24-26). Instead, HEAT repeats
generate a ridge-like motif, which creates an interaction interface
(24, 25). Therefore, TPR and HEAT motifs illustrate how a common
structural repeat unit can assemble related motifs to create different structures.
In summary, our findings indicate a relationship between the native
complexes formed by PP5 and PP2A in cells. Further studies to
characterize this relationship should increase understanding of how
phosphatase functions are regulated within the cell.
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ACKNOWLEDGEMENTS |
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We are grateful to Dr. Sandra Rossie for the PP5 yeast two-hybrid constructs and the 6×His-TPR/PP5 constructs and to Dr. Brian Wadzinski for the antibodies against B subunits. We also thank Dr. Chris Mayhew, Dr. Roland Hilgarth, and Laura Kute for discussions during the course of this work and insightful comments on the manuscript.
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FOOTNOTES |
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* This work was supported by National Institutes of Health Grant GM61053.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
To whom correspondence should be sent: Dept. of Biochemistry,
University of Kentucky, Chandler Medical Center, 800 Rose St., Lexington, KY 40536-0084. Tel.: 859-323-5777; Fax: 859-323-1037; E-mail: kdsarge@uky.edu.
Published, JBC Papers in Press, August 14, 2001, DOI 10.1074/jbc.M106906200
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ABBREVIATIONS |
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The abbreviations used are: PPP, phosphoprotein phosphatases; PP2A, protein phosphatase 2A; PP5, protein phosphatase 5; PP2Ac, catalytic subunit of PP2A; PR65, A subunit of PP2A; TPR, tetratricopeptide repeat; GST, glutathione S-transferase; PAGE, polyacrylamide gel electrophoresis; HSF2, heat shock factor 2; HEAT, huntingtin-elongation-A subunit-target of rapamycin.
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