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J. Biol. Chem., Vol. 276, Issue 45, 42070-42076, November 9, 2001
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From the Medical Research Council United Kingdom Human Genome Mapping Project Resource Center, Hinxton, Cambridge CB10 1SB, United Kingdom
Received for publication, April 11, 2001, and in revised form, June 21, 2001
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ABSTRACT |
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The G6b gene, located in the class
III region of the human major histocompatibility complex, has been
suggested to encode a putative receptor of the immunoglobulin
superfamily. Genomic sequence information was used as a starting
point to clone the corresponding cDNA. Reverse transcriptase
polymerase chain reaction showed that expression of the gene is
restricted to certain hematopoietic cell lines including K562, Molt 4, and Jurkat. Several splice variants were detected, varying only in
their C-terminal parts. One of the potential membrane-bound
isoforms contained two immunoreceptor tyrosine-based inhibitory motifs
in its cytoplasmic tail. Four of the isoforms were expressed as
epitope-tagged proteins in the cell lines K562 and COS-7. The two
splice isoforms lacking the hydrophobic transmembrane segment were
secreted from the cell. Glycosidase treatment of the four recombinant
proteins provided evidence for N- and
O-glycosylation. Immunofluorescence studies indicated that
the spliced isoforms having a transmembrane segment were directed to
the cell membrane. The G6b isoform containing two immunoreceptor
tyrosine-based inhibitory motifs in its cytoplasmic tail was found to
be phosphorylated on tyrosine residues after pervanadate treatment of
cells and, subsequently, interacts with the SH2-containing
protein-tyrosine phosphatases SHP-1 and SHP-2. Mutagenesis studies
showed that phosphorylation of tyrosine 211 is critical for the
interaction of G6b with SHP-1 and SHP-2.
The Ig superfamily receptors constitute a large group of
cell surface proteins involved in the immune system and cellular recognition (1, 2). Members of this family are characterized by an
extracellular part containing at least one immunoglobulin domain, a
transmembrane segment, and a cytoplasmic tail. A subset of the Ig
superfamily is the inhibitory receptor characterized by the presence of
one or more immunoreceptor tyrosine-based inhibitory motifs
(ITIM)1 in their cytoplasmic
tail. The consensus sequence of the ITIM is generally described as
(L/V/I/S/T)XYXX(L/V) (3). Following phosphorylation of the tyrosine residue within this motif, the SH2
domain containing protein-tyrosine phosphatases SHP-1 and/or SHP-2 can
be recruited to the receptor, where they can dephosphorylate membrane-bound phosphoproteins, thus modulating the signaling cascade.
SHP-1 is a non-transmembrane protein primarily expressed in
hematopoietic cells and is considered to play a negative role in cell
signaling (4). Identified substrates for SHP-1 are the linker of
activated T-cells (5, 6) and the adapter protein Slp-76 (7). In
contrast, SHP-2 has been considered to act primarily as a positive
signal transducer (8). Possible substrates for this phosphatase are the
platelet-derived growth factor beta receptor (9) and PZR (10).
SHP-2 modulates the signal strength of receptor-protein-tyrosine
kinases and is also involved in cytokine and antigen signaling not
involving receptors with intrinsic kinase activity (11). Although the
two phosphatases appear to have opposing roles, there are examples of
ITIM-containing receptors that recruit both SHP-1 and SHP-2 (12, 13).
Other receptors are reported to recruit primarily only one form (14,
15). Both phosphatases SHP-1 and SHP-2 contain two SH2 domains and a
catalytic domain (16, 17).
The human major histocompatibility complex (MHC) is located on
chromosome band 6p21.3 and spans ~3.6 megabases of DNA. The complete
sequence of this region has been determined (18). The central MHC
region is termed the class III region and comprises 0.8 megabases. Of
the 59 genes in this region, 40% are known or predicted to have a role
in the immune system or inflammation, such as tumor necrosis factor,
lymphotoxin- G6b is an uncharacterized gene located in the class III
region of the MHC that encodes a putative cell surface receptor of the
Ig superfamily. Its predicted gene product was found to contain a
potential signal peptide, a variable type Ig domain, and a
transmembrane segment (23). Interestingly, we have observed that the
intracellular stretch also contains two tyrosine residues in ITIM
consensus sequences.
In this study, the available genomic sequence information was used as a
starting point to obtain the cDNA encoding the G6b protein. By
RT-PCR, several alternative splice variants of the G6b mRNA were
identified in the bone marrow-derived cell lines K562, Molt4, and
Jurkat but not in other hematopoietic and fibroblast cell lines
studied. These mRNAs encode proteins with different C
termini, some of which lacked a transmembrane segment. Expression of
four of the proteins as epitope-tagged fusion proteins in mammalian cells allowed their further characterization. An association of the
splice isoform containing the ITIM motifs with SHP-1 and SHP-2 was
shown following pervanadate-induced tyrosine phosphorylation.
Reverse Transcriptase-PCR--
RNA isolation from human cell
lines was performed as described previously (24). cDNA synthesis
was carried out using a Promega Reverse Transcription System and ~1
µg of poly(A)+ RNA according to the
manufacturer's instructions. Control PCR reactions with Expression of Proteins in COS-7 Cells and K562 Cells--
For
expression of epitope-tagged proteins in mammalian cells, the open
reading frames of the different splice isoforms were cloned into the
pcDNA3 vector (Invitrogen) fused to a T7-epitope tag
(MASMTGGQQMGRDP). To express the G6b isoforms fused at the C terminus
to the T7-epitope tag, PCR copies were made of the open reading frames
removing the stop codons. The forward primer 5'-TTATAAGCTTACCATGGCTGTGTTTCTGC-3' was used, creating a
HindIII site (underlined). The reverse primer (either
5'-TCATGCGGCCGCGCTAGCAACTACAACTGCATAGA-3' (for G6b splice
isoforms B and E) or
5'-TCATGCGGCCGCGCTAGCGCAGGGTCCGCTGTGG-3' (for G6b splice
isoforms A and D)) was used. These two reverse primers obliterated the
stop codons and introduced NheI sites (underlined), allowing
direct fusion to the T7 tag sequence in the T7.TagpBlsc vector (25).
PCR fragments were cloned into this vector using
HindIII-NheI. Constructs were checked by DNA sequencing as described above. The inserts encoding the fusion proteins
were cloned into the pcDNA3 vector using
HindIII-NotI.
To express the G6b isoforms with the T7-epitope tag fused to the N
terminus, an expression vector was created containing the human CD33
signal peptide (26) instead of the G6b signal peptide followed by the
T7-epitope tag in pcDNA3. First, a fusion between the CD33 signal
peptide and the T7-epitope tag was constructed in pBluescript. The CD33
leader-T7 tag fusion was amplified by PCR using primers
5'-GCTTGGTACCATGCCGCTGCTGCTACTG-3' introducing a
NdeI site (underlined) and
5'-GATCTATGGATCCCGACCC-3' containing a BamHI
site (underlined). The resulting fragment was cloned into the
pcDNA3 vector using NdeI and BamHI, yielding
the plasmid CD33-T7-pcDNA3. The G6b splice isoforms were
PCR-amplified with primer
5'-GTCGGGATCCCCAAGGGAACCCTGGGGC-3', introducing a
BamHI site (underlined) and removing the first 15 amino
acids of the potential signal sequence, and
5'-AATTGCGGCCGCCCTTCAAACTACAACTGC-3', introducing a
NotI site (underlined) and maintaining the stop codon. The
resulting PCR fragments were digested with BamHI and NotI and cloned into CD33-T7-pcDNA3 digested with
BamHI and NotI. The clones were checked by DNA
sequencing. Mutations of tyrosine to phenylalanine in the cytoplasmic
tail of the N-terminal-tagged G6b-B construct were made using the
QuikChangeTM mutagenesis method (Stratagene) according to the
manufacturer's instructions.
Proteins were transiently expressed in COS-7 cells using the
DEAE-dextran method as described elsewhere (25). Three days after
transfection, cells and supernatants were harvested. K562 cells were
transfected with Lipofectin (Life Technologies, Inc.) according
to the manufacturer's instructions. Three days after transfection,
cells were maintained in the presence of 0.5 mg/ml G418. For
direct analysis on SDS-polyacrylamide gels, cells were washed once with
phosphate-buffered saline and lysed in SDS-PAGE sample buffer (27).
Supernatants were routinely cleared by centrifugation. SDS-PAGE was
done according to Laemmli (27) on 12% polyacrylamide gels. Western
blot immunostaining was performed with the anti-T7 tag monoclonal
antibody (mAb) (Novagen). Immunoreactive proteins were detected with
horseradish peroxidase-coupled secondary antibody followed by detection
with ECL (PerkinElmer Life Sciences). Immunofluorescence localization studies were performed as described elsewhere (28), and
staining was examined with a Nikon Eclipse E800 microscope linked to a
MicroRadiance confocal imaging system (Bio-Rad).
Glycosidase Treatment--
G6b splice isoforms were expressed in
COS-7 cells as described above, and cell lysates were prepared in 10 mM sodium phosphate buffer, pH 6.5, 0.1% SDS, and 50 mM Pervanadate Treatment--
Pervanadate was prepared by mixing
sodium orthovanadate (Sigma) and hydrogen peroxide (Sigma) in
phosphate-buffered saline to final concentrations of 1 and 10 mM, respectively, and leaving the mixture for 15 min at
room temperature. To remove excess hydrogen peroxide, catalase (Sigma)
was added to a final concentration of 0.2 mg/ml. Cells were stimulated
by a 10× dilution of pervanadate in phosphate-buffered saline for 10 min at 37 °C. Cells were lysed in lysis buffer (10 mM
Tris/HCl, pH 7.5, 1% Nonidet P-40, 150 mM NaCl, 0.02%
sodium azide, and 1 mg/ml bovine serum albumin) supplemented with
protease inhibitor mixture (200× diluted). Lysates were cleared by a
15-min centrifugation at 4 °C, and immunoprecipitations were
performed with the anti-T7 mAb and protein A-Sepharose (Sigma) at
4 °C. Proteins were eluted with SDS-PAGE sample buffer at 95 °C
for 2 min and analyzed by SDS-PAGE followed by Western blotting. The
Western blots were probed with either the anti-T7 tag mAb horseradish
peroxidase conjugate (Novagen), anti-phosphotyrosine mAb (4G10) coupled
to horseradish peroxidase (Upstate Biotech), anti-SHP-1, or anti-SHP-2
polyclonal antisera (Santa Cruz Biotechnology). In the case of the
anti-SHP-1 and SHP-2 antisera, a secondary antibody coupled to
horseradish peroxidase was used. Proteins were detected with ECL as before.
RT-PCR--
No human expressed sequence tag (EST) clones were
found that contained any part of the coding region of G6b, although EST BE750421 was found to encode a putative bovine homologue. However, there were a few human ESTs that corresponded to the genomic sequence ~1000-1600 nt downstream of the putative stop codon.
Characterization of some of these clones (e.g. AA699838)
indicated that they did not contain the complete open reading frame.
Because one-step RT-PCR turned out not to be sensitive enough, nested
RT-PCR was performed on cDNA preparations from poly(A)+
RNA derived from various human cell lines. The preparations from the
bone marrow-derived cell lines K562 (erythroleukemia), Molt4, and
Jurkat (T cell leukemias) yielded a number of differently sized PCR
fragments (Fig. 1A,
bands A-F) with the two closely migrating
bands A and B (Fig. 1A) being of the
expected size. PCR on the bone marrow-derived cell lines U937
(monocyte-like), Raji (B cell-like), HL60 (promyelocytic), and the
fibroblast cell lines Tk and HeLa did not yield any of these products
(Fig. 1). Similarly, in a separate experiment, we were not able to
amplify by PCR G6b mRNA from human natural killer cell lines
NKL, NK92, and YT (data not shown).
Sequence analysis of the generated RT-PCR products showed that the band
with the lower molecular weight (band B) represents the form
predicted by Genscan (23) and also annotated in
EMBL/GenBankTM entry AF129756). This form contains two ITIM
motifs at amino acid positions 209-214 and 235-240 in the encoded
polypeptide (Fig. 2B).
Comparison of the cDNA sequence of the higher molecular weight band
(band A) with the genomic sequence revealed that this form
includes an extra stretch of 19 base pairs relative to G6b-B due to
different splicing at the 5' end of coding exon 5 (Fig. 2). This extra
stretch shifts the reading frame of the C-terminal end of G6b-A
compared with G6b-B, resulting in the absence of the two ITIM motifs in
G6b-A. The lower molecular weight bands (bands
C-E) correspond to variants missing either exon 3 or
exons 3 and 4 together (Fig. 2). Because the putative transmembrane segment is encoded by exon 3, these variants would encode proteins that
are predicted to be secreted and not to be membrane-associated. Bands
that showed higher molecular weights than the ones described above
(bands F and G) turned out to contain intronic
sequences. These cDNAs would encode proteins that contain the same
signal sequence, Ig domain, and transmembrane domain as the previous forms but with a different cytoplasmic tail. The only PCR band observed
in Tk cells (Fig. 1A) contained the intron between coding exons 1 and 2, which leads to a premature stop codon. No potentially functional transcript could be amplified from this cell line.
Expression of G6b Isoforms in COS-7 Cells--
Four splice
isoforms were selected for further characterization, two transmembrane
segment-containing isoforms (G6b-A and G6b-B) and two soluble isoforms
(G6b-D and G6b-E). The C terminus of G6b-A is identical to the C
terminus of G6b-D, and the C terminus of G6b-B corresponds to the C
terminus of G6b-E. The four splice isoforms were cloned into a
pcDNA3 expression vector as fusions with a T7 epitope. The fusion
proteins were transiently expressed in COS-7 cells. Multiple bands per
lane were observed on SDS-polyacrylamide gel, which could be
indicative of glycosylation, each band representing the protein in a
different state of glycosylation (Fig.
3). As expected, only the isoforms
lacking transmembrane segments (G6b-D and G6b-E) were present in the
medium. The expected molecular sizes for the G6b splice variants
without leader peptide are 24.3 (G6b-A), 23.2 (G6b-B), 19.5 (G6b-D), and 18.3 kDa (G6b-E). The observed molecular sizes of the
proteins on SDS-polyacrylamide gel are in general in good agreement
with the expected molecular sizes when considering the lowest band
found in each case. An exception to this is the G6b-E form found in the
medium, which migrates at ~30-38 kDa. This might be due to the
presence of relatively large glycan chains. In this respect, it is
noteworthy that G6b-E found within the cell has a molecular size much
closer to the theoretical one, probably because these proteins have not
been through the complete glycosylation pathway.
Glycosidase Treatment of G6b--
To investigate whether the
different G6b variants were glycosylated, COS-7 cell lysates and cell
supernatants containing the various C-terminal-tagged forms of G6b were
incubated with combinations of the glycosidases
N-glycosidase F, O-glycosidase, and/or
neuraminidase (Fig. 4). Treatment of
N-glycosidase F alone causes in all forms (except G6b-E) the
disappearance of some of the multiple bands, indicating that the
various forms have, at least in part, N-glycan chains.
Treatment with both neuraminidase and O-glycosidase resulted in bands with molecular weights no different from the bands obtained after only neuraminidase treatment, except in the case of the secreted
form of G6b-E, indicating that only this form contains a substantial
O-glycosylation. However, when the molecular weights of the
membrane proteins G6b-A and G6b-B treated with only
N-glycosidase F (devoid of N-glycan chains) are
compared with these proteins treated with all three glycosidases
(devoid of both N- as well as O-glycan chains), a
small difference in the molecular weight is observed (Fig. 4). This
difference can be explained by the presence of low molecular weight
O-glycan chains. Comparing the same treatments in the case
of secreted G6b-D shows that the higher molecular weight band observed
when the protein is treated with N-glycosidase F alone is
not detected when the protein is treated with all three glycosidases,
indicating that this particular band contains
O-glycosylation.
In the case of the non-membrane-bound isoforms (G6b-D and G6b-E), the
proteins secreted into the medium contain more glycosylation than what
is found in the corresponding cell lysates. The proteins found in the
cell lysates may also represent misfolded proteins. For that reason
they may not be transported through the secretory pathway and thus may
not be fully glycosylated. When the same treatments were performed on
the N-terminal-tagged isoforms, similar results were obtained (data not shown).
Immunofluorescence--
Localization studies with
immunofluorescence were performed using the constructs with either the
C-terminal or N-terminal T7-epitope tag (Fig.
5). Using the C-terminal-tagged proteins, an overall staining of the cells was observed in the case of the isoforms G6b-A and G6b-B, which contain potential transmembrane segments. This finding is in line with a localization at the plasma membrane. In contrast, G6b-D and G6b-E showed a pattern consistent with
endoplasmic reticulum and Golgi labeling.
In the case of the N-terminal-tagged proteins, staining was performed
under both permeabilizing as well as non-permeabilizing conditions.
With permeabilizing conditions, the patterns observed were similar to
the ones observed with the C-terminal-tagged proteins (Fig.
5B). Staining under non-permeabilizing conditions clearly indicated that the G6b forms containing a transmembrane segment (G6b-A
and G6b-B) were present at the plasma membrane with the T7-epitope tag
outside the cell (Fig. 5C). In contrast, G6b-D- and
G6b-E-expressing cells showed a completely different pattern when
stained under non-permeabilizing conditions compared with permeabilizing conditions. G6b-D-expressing cells showed staining around the edges of the cell, in contrast to G6b-E, where this type of
staining is virtually absent (Fig. 5C). This staining might
be explained if the protein sticks to the cell after being secreted.
Pervanadate Treatment and Interaction with SHP-1 and
SHP-2--
Most inhibitory receptors, either of the Ig superfamily or
lectin-like superfamily, contain at least two ITIMs with a typical spacing of 20-32 amino acids in the primary sequence (3) and are known
to bind SHP-1 and/or SHP-2 after phosphorylation. G6b-B contains two
tyrosine residues in consensus ITIM sequences in its cytoplasmic tail,
and the spacing between these two ITIMs is 26 amino acids. To
investigate whether this isoform was able to bind SHP-1 and/or SHP-2
after phosphorylation, COS-7 cells expressing the four N-terminal
T7-tagged G6b isoforms were treated with pervanadate. In the case of
the membrane-bound forms G6b-A and G6b-B, the N-terminal epitope tag
(present outside the cell) is expected not to interfere with these
interactions, which take place at the cytoplasmic tail. Analysis of
total COS-7 lysates by Western blotting with anti-phosphotyrosine
antibodies showed that tyrosine phosphorylation in the cells was highly
increased due to pervanadate treatment (data not shown). The different
G6b isoforms were immunoprecipitated with the anti-T7 mAb from cells treated or untreated with pervanadate (Fig.
6). Induction of tyrosine phosphorylation
on G6b was checked with a phosphotyrosine-specific antibody. Only the
G6b-B isoform was found to be tyrosine-phosphorylated after
pervanadate stimulation (Fig. 6). In the immunoprecipitate containing
tyrosine-phosphorylated G6b-B, both SHP-1 and SHP-2 can be detected by
Western blot immunostaining (Fig. 6). The presence of SHP-1 and SHP-2
is strictly dependent on both the presence of the ITIM-containing G6b-B
isoform and on the induction of tyrosine phosphorylation by pervanadate
on this molecule.
To investigate whether both cytoplasmic tyrosines of G6b-B or just one
of them are phosphorylated, three mutant constructs were expressed in
COS-7 cells, namely G6b-B(Y211F), G6b-B(Y237F), and
G6b-B(Y211F/Y237F). Mutation of Tyr-211 to Phe resulted in a total loss
of detectable tyrosine phosphorylation as well as a loss of interaction
of G6b-B with SHP-1 and SHP-2 (Fig.
7). Mutation of Tyr-237 to Phe leads to a
clearly detectable, although strongly reduced, level of
tyrosine phosphorylation and SHP-1 and SHP-2 interaction.
These results suggest that Tyr-211 is the only tyrosine
residue to be phosphorylated and to be involved in SHP-1 and SHP-2
binding, even though Tyr-237 is in an ITIM consensus sequence.
To confirm the interaction of G6b-B with SHP-1 and SHP-2 in a human
bone marrow-derived cell line, a similar experiment was performed using
the human leukemic cell line K562, which expresses G6b at the RNA level
(Fig. 1). The two membrane-bound forms of G6b (G6b-A and G6b-B) were
expressed in this cell line. Only the G6b-B isoform was phosphorylated
upon pervanadate treatment (Fig. 8). Both
SHP-1 and SHP-2 can be detected in immunoprecipitates of
tyrosine-phosphorylated G6b-B in transfected K562 cells, confirming the
results obtained in COS-7 cells.
We have characterized the G6b gene located in the class III region
of the human MHC, a region known to contain many genes with relevance
in the immune system. RT-PCR on cDNA preparations from various
human cell lines showed that the G6b gene is only expressed in a
restricted set of hematopoietic cell lines, suggesting an
immune-related function. Furthermore, it was observed that the RNA
derived from this gene is alternatively spliced. One spliced form,
which encodes a protein containing two ITIM sequences (G6b-B), appears
to be less abundant at the RNA level than the form lacking these motifs
(G6b-A). Besides these forms, other variants were detected encoding
proteins lacking a transmembrane segment (G6b-D and G6b-E). When
expressed in COS-7 cells, these latter forms were secreted, showing
that the N-terminal hydrophobic segment indeed serves as a signal sequence.
Glycosidase treatment of the various G6b isoforms provided evidence
that the proteins are both N- as well as
O-glycosylated. The extracellular part of the
membrane-bound forms of G6b contains only one consensus
N-glycosylation site. This site is located in the predicted
B-strand of the V-type Ig domain, and the side chain of the asparagine
residue (Asn-32) to be glycosylated is likely to be on the surface (see
Ref. 29 for a detailed description of V-type Ig domains), making it a
suitable residue for glycosylation. Secreted G6b-E contains a
relatively high amount of O-glycosylation compared with the
other isoforms. Because the difference between G6b-D and G6b-E lies in
the C-terminal tail, it is likely that there is at least one extra
O-glycosylation site in this part of G6b-E, which could
explain the difference in glycosylation between these two forms.
Although G6b-B contains a C terminus identical to the C terminus of
G6b-E, in the case of G6b-B, this tail is cytoplasmic and,
therefore, not available for glycosylation.
Immunofluorescence with non-permeabilized cells using the
N-terminal-tagged constructs showed that the T7 tag is outside the cells in the case of G6b-A and G6b-B. Although these constructs do not
carry their own signal sequence, it confirms that the proteins are
transported to the plasma membrane and not retained in the endoplasmic
reticulum. These observations indicate that these proteins are able to
fold correctly in these cells because proteins that are not able to
fold correctly are retained in the endoplasmic reticulum and finally
broken down (30). For the same reason, it can be assumed that G6b-D and
G6b-E are able to correctly fold in COS-7 cells because these variants
are secreted into the medium.
Of all the G6b isoforms analyzed, only G6b-B appears to be efficiently
phosphorylated when COS-7 and K562 cells expressing this recombinant
protein are treated with pervanadate. This is completely in line with
expectations as G6b-A does not contain cytoplasmic tyrosine residues
and the soluble isoforms do not have a part exposed to the cytoplasmic
kinases even though G6b-E contains ITIM sequences identical to G6b-B.
The interaction of tyrosine-phosphorylated G6b-B with SHP-1 and SHP-2
could be observed in two different cell lines, one of them (K562)
expressing G6b mRNA endogenously. SHP-1 is known to be primarily
expressed in hematopoietic cells (4), but we could clearly detect this
protein in the monkey fibroblast cell line COS-7.
Although G6b-B contains two tyrosine residues in ITIM consensus
sequences in its cytoplasmic tail (Tyr-211 and Tyr-237),
site-directed mutagenesis suggested that only one of them (Tyr-211)
gets phosphorylated upon pervanadate stimulation of COS-7 cells and
that this tyrosine is responsible for SHP-1 and SHP-2 binding. This
result was not anticipated because mutagenesis studies with similar
receptors containing two tyrosine residues in ITIMs showed the
involvement of both residues in SHP-1 or SHP-2 binding (15, 31). It is assumed that in these cases, the tandem SH2 domains of SHP-1 and SHP-2
bind the diphosphorylated receptor with high affinity. However, the
absence of detectable tyrosine phosphorylation of the Y211F mutant does
not necessarily mean that Tyr-237 does not get phosphorylated in the
wild type construct. It cannot be excluded that the phosphorylation of
tyrosine 237 is dependent on the prior phosphorylation of tyrosine 211.
It has become clear that inhibitory receptors often have closely
related activating homologues that are expressed on the same cell type
and are believed to bind similar or identical extracellular ligands
(32). Known examples are the killer inhibitory receptor family as well
as the Ly49 family (32). In these cases, inhibitory and activating
receptors are encoded by different genes. In contrast to the inhibitory
proteins, the activating receptors generally have a short cytoplasmic
tail lacking ITIM sequences. Furthermore, they possess a positively
charged residue in the transmembrane segment involved in binding to
signaling effector molecules such as CD3 In summary, we have shown that the G6b gene located in the
class III region of the human MHC is expressed and processed in immune-related cells at the RNA level. Characterization of the different G6b isoforms expressed in mammalian cells is in line with G6b
encoding a novel glycosylated cell surface receptor, although soluble
variants are found as well. The interaction of G6b-B with SHP-1 and
SHP-2 classifies this variant at least as a new member of the family of
inhibitory receptors of the Ig superfamily and the first one found so
far in the MHC. However, the G6b Ig domain does not contain any
significant homology toward other Ig domain-containing proteins with
known ligand. Identification of the extracellular ligand might be
crucial in understanding the role of the G6b gene product in cellular signaling.
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INTRODUCTION
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ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
, and lymphotoxin-
. Susceptibility to a wide range of
diseases has been linked to the MHC, including
insulin-dependent diabetes mellitus (19), rheumatoid
arthritis (20), and ankylosing spondylitis (21). Although disease
susceptibility is often due to allelic differences in the class I and
class II antigens, there is evidence that loci located in the class III
region may also contribute (21, 22). For this reason the detailed
characterization of genes located in the class III region with a
potential role in the immune system is of great interest.
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EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
-actin
primers were performed on each cDNA reaction (forward
5'-CTTCGCGGGCGACGATGC-3' and reverse 5'-TGGTGGTGAAGCTGTAGCC-3'). PCR
primers for G6b were designed based on the genomic sequence (GenBankTM accession number AF129756). To obtain the
complete open reading frame, nested PCR was performed on the cDNA
samples. In the first round, forward primer 5'-AGCTTCTCCTCACCACATCC-3'
(nt position 26694-26713) and reverse primer
5'-AAAGGGTCAGTCTCCTGACG-3' (nt position 23402-23421) were used. In the
second round, forward primer 5'-CCTAACCATGGCTGTGTTTC-3' (nt position
26676-26695) was used in combination with reverse primer
5'-GGGAGGTTTGGAGTAAGGGC-3' (nt position 24972-24991). In each round,
25 cycles were performed using an annealing temperature of 60 °C.
PCR fragments were cloned into the pGEM-T vector (Promega). Clones were
checked by sequencing on an Applied Biosystems (Applera) 377 automated DNA sequencer using Big Dye terminators.
-mercaptoethanol. For treatment of secreted G6b
forms, the medium was harvested, and SDS (final concentration, 0.1%)
and
-mercaptoethanol (final concentration, 50 mM) were
added. To denature the proteins, both cell lysates and media were
heated for 2 min at 95 °C. Thereafter, Nonidet P-40 (final
concentration, 1%), sodium phosphate buffer, pH 6.5 (final
concentration, 50 mM), and protease inhibitor mixture
(Sigma P8340, 200× diluted) were added. Aliquots of these
preparations were treated with N-glycosidase F (25 units/ml), neuraminidase (0.15 units/ml), or
O-glycosidase (4 milliunits/ml) for 5 h at 37 °C.
(All three enzymes were obtained from Roche Molecular Biochemicals.) Reactions were then stopped by the addition of SDS-PAGE sample buffer
and analyzed on 12% polyacrylamide gels followed by Western blot
immunostaining as described above.
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RESULTS
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

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Fig. 1.
RT-PCR of G6b using cDNAs from various
human cell lines as template. A, second round of the
nested PCR reactions on human cDNA preparations using G6b-specific
primers. The cell lines from which the cDNA samples were derived
are denoted above the gel. Bands are designated
A-G. Chr corresponds to the band
derived from chromosomal contamination. B,
-actin control
of the cDNA preparations. Molecular weight markers (in base pairs)
are indicated on the right.

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Fig. 2.
Genomic structure and amino acid sequences of
the G6b-splice isoforms. A, genomic structure of G6b.
The six exons are numbered 1-6. The
nucleotide numbers above the exons correspond to
GenBankTM/EMBL entry AF129756. The two different 5' splice
sites of exon 5 are denoted Y and Z. When exon 5 is spliced at the Y site, the stop codon is located at nt 25000 (G6b-B,
G6b-C, and G6b-E). When exon 5 is spliced at the Z site, the stop codon
is located at nt 25031 (G6b-A and G6b-D). Exceptions are G6b-F and
G6b-G in which the stop codon is located in the intron between exons 5 and 6. B, amino acid sequences of the G6b splice variants.
For each splice variant, the exon composition is shown. For exon 5, the
5' splice site is denoted as either Y or Z (in
brackets). Exon boundaries are shown by a slash
(/), and the intron is indicated with two slashes (//). The
putative signal sequence is underlined, and the putative
transmembrane segment is in bold. ITIM sequences are in
italics and underlined.

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Fig. 3.
Expression of G6b isoforms in COS-7
cells. The C-terminal (C) and N-terminal
(N) T7-epitope-tagged G6b constructs were transiently
expressed, and expression was analyzed by Western blot immunostaining
using the anti-T7 tag mAb. The negative control cells were transfected
with empty pcDNA3 vector. Both medium and cells were analyzed, and
samples were run under reducing conditions. Molecular size markers
(kDa) are indicated on the left of each blot.

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Fig. 4.
Glycosidase treatment of G6b isoforms.
Cell lysates or medium were treated with various glycosidases alone or
in combination as indicated and analyzed by Western blot immunostaining
with the anti-T7 tag mAb. Molecular size markers (kDa) are indicated on
the left of each blot. P,
N-glycosidase F; O, O-glycosidase;
N, neuraminidase.

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Fig. 5.
Immunofluorescence of G6b isoforms. The
various G6b isoforms were expressed in COS-7 cells as either C-terminal
(A) or N-terminal (B and C)
T7-epitope-tagged fusions. In the case of the N-terminal-tagged
versions, the staining was performed under permeabilizing
(B) as well as under non-permeabilizing (C)
conditions.

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Fig. 6.
Pervanadate treatment of COS-7 cells
transfected with the different G6b cDNAs and co-immunoprecipitation
of G6b-B with SHP-1 and SHP-2. Cells expressing T7-epitope-tagged
G6b isoforms were untreated (
) or treated (+)
with pervanadate, and immunoprecipitations were performed with the
anti-T7 mAb. Immunoprecipitates were analyzed by Western blot
immunostaining with the anti-T7 mAb, anti-phosphotyrosine mAb, and
polyclonal antibodies against SHP-1 and SHP-2. Molecular size markers
(kDa) are indicated on the left of each blot.

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Fig. 7.
Pervanadate treatment of COS-7 cells
transfected with the different G6b-B Tyr to Phe mutant cDNAs and
co-immunoprecipitation with SHP-1 and SHP-2. Immunoprecipitations
were performed with the anti-T7 mAb. Immunoprecipitates were analyzed
by Western blot immunostaining with the anti-T7 mAb,
anti-phosphotyrosine mAb, and polyclonal antibodies against SHP-1 and
SHP-2. Molecular size markers (kDa) are indicated on the
left of each blot.

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Fig. 8.
Pervanadate treatment of K562 cells
transfected with G6b-A and G6b-B cDNAs and interaction with SHP-1
and SHP-2. K562 cells expressing T7-epitope-tagged G6b-A and G6-B
were treated (+) or untreated (
) with
pervanadate, and immunoprecipitations were performed using the anti-T7
mAb. Immunoprecipitates were analyzed by Western blot immunostaining
with the anti-T7 mAb, anti-phosphotyrosine mAb, and polyclonal
antibodies against SHP-1 and SHP-2. Molecular size markers (kDa) are
indicated on the left of each blot.
![]()
DISCUSSION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
, DAP10, and DAP12 (33, 34).
The results obtained in this study with G6b resemble the studies with
the mouse natural killer cell receptor 2B4 in which two splice variants
exist that differ only in the cytoplasmic tail (35). The longer variant of 2B4 contains four consensus ITIM sequences, interacts with SHP-2
upon tyrosine phosphorylation, and inhibits NK cell-mediated lysis of
tumor targets (36). In contrast, the shorter 2B4 isoform contains only
one potential ITIM but does not get phosphorylated upon pervanadate
stimulation and thus does not recruit SHP-2. This shorter variant has
been shown to stimulate NK cell-mediated lysis of tumor targets (36).
Analogous to these results, one can speculate that the G6b-A variant is
the activating counterpart of the inhibitory receptor G6b-B. However,
both the short form of 2B4 as well as G6b-A lack a positively charged
residue in the transmembrane segment, which is in contrast to the
killer inhibitory receptor and Ly49 family of activating receptors.
| |
ACKNOWLEDGEMENTS |
|---|
We thank Drs. A. Alcami and C. Sanderson for valuable comments on the manuscript.
| |
FOOTNOTES |
|---|
* This work was supported by the Medical Research Council.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
The nucleotide sequence(s) reported in this paper has been submitted to the GenBankTM/EMBL Data Bank with accession number(s) AJ292259, AJ292260, AJ292261, AJ292262, AJ292263, AJ292264, and AJ292265.
To whom correspondence should be addressed: MRC UK HGMP Resource
Center, Hinxton, Cambridge CB10 1SB, UK. Tel.: 44-1223-494511; Fax:
44-1223-494512; E-mail: rcampbel@hgmp.mrc.ac.uk.
Published, JBC Papers in Press, September 5, 2001, DOI 10.1074/jbc.M103214200
| |
ABBREVIATIONS |
|---|
The abbreviations used are: ITIM, immunoreceptor tyrosine-based inhibitory motif; SHP, Src homology 2 domain containing protein-tyrosine phosphatase; MHC, major histocompatibility complex; RT-PCR, reverse transcriptase polymerase chain reaction; PAGE, polyacrylamide gel electrophoresis; nt, nucleotide(s); mAb, monoclonal antibodies.
| |
REFERENCES |
|---|
|
|
|---|
| 1. | Hunkapiller, T., and Hood, L. (1989) Adv. Immunol. 44, 1-63[Medline] [Order article via Infotrieve] |
| 2. | Williams, A. F., and Barclay, A. N. (1988) Annu. Rev. Immunol. 6, 381-405[Medline] [Order article via Infotrieve] |
| 3. | Vivier, E., and Daeron, M. (1997) Immunol. Today 18, 286-291[Medline] [Order article via Infotrieve] |
| 4. | Zhang, J., Somani, A. K., and Siminovitch, K. A. (2000) Semin. Immunol. 12, 361-378[CrossRef][Medline] [Order article via Infotrieve] |
| 5. |
Valiante, N. M.,
Phillips, J. H.,
Lanier, L. L.,
and Parham, P.
(1996)
J. Exp. Med.
184,
2243-2250 |
| 6. |
Weber, J. R.,
Orstavik, S.,
Torgersen, K. M.,
Danbolt, N. C.,
Berg, S. F.,
Ryan, J. C.,
Tasken, K.,
Imboden, J. B.,
and Vaage, J. T.
(1998)
J. Exp. Med.
187,
1157-1161 |
| 7. |
Binstadt, B. A.,
Billadeau, D. D.,
Jevremovic, D.,
Williams, B. L.,
Fang, N.,
Yi, T.,
Koretzky, G. A.,
Abraham, R. T.,
and Leibson, P. J.
(1998)
J. Biol. Chem.
273,
27518-27523 |
| 8. | Feng, G. S. (1999) Exp. Cell Res. 253, 47-54[CrossRef][Medline] [Order article via Infotrieve] |
| 9. |
Klinghoffer, R. A.,
and Kazlauskas, A.
(1995)
J. Biol. Chem.
270,
22208-22217 |
| 10. |
Zhao, Z. J.,
and Zhao, R.
(1998)
J. Biol. Chem.
273,
29367-29372 |
| 11. | Streuli, M. (1996) Curr. Opin. Cell Biol. 8, 182-188[CrossRef][Medline] [Order article via Infotrieve] |
| 12. |
Fournier, N.,
Chalus, L.,
Durand, I.,
Garcia, E.,
Pin, J. J.,
Churakova, T.,
Patel, S.,
Zlot, C.,
Gorman, D.,
Zurawski, S.,
Abrams, J.,
Bates, E. E.,
and Garrone, P.
(2000)
J. Immunol.
165,
1197-1209 |
| 13. | Cantoni, C., Bottino, C., Augugliaro, R., Morelli, L., Marcenaro, E., Castriconi, R., Vitale, M., Pende, D., Sivori, S., Millo, R., Biassoni, R., Moretta, L., and Moretta, A. (1999) Eur. J. Immunol. 29, 3148-3159[CrossRef][Medline] [Order article via Infotrieve] |
| 14. |
Falco, M.,
Biassoni, R.,
Bottino, C.,
Vitale, M.,
Sivori, S.,
Augugliaro, R.,
Moretta, L.,
and Moretta, A.
(1999)
J. Exp. Med.
190,
793-802 |
| 15. |
Xu, M.,
Zhao, R.,
and Zhao, Z. J.
(2000)
J. Biol. Chem.
275,
17440-17446 |
| 16. |
Ahmad, S.,
Banville, D.,
Zhao, Z.,
Fischer, E. H.,
and Shen, S. H.
(1993)
Proc. Natl. Acad. Sci. U. S. A.
90,
2197-2201 |
| 17. | Shen, S. H., Bastien, L., Posner, B. I., and Chretien, P. (1991) Nature 352, 736-739[CrossRef][Medline] [Order article via Infotrieve] |
| 18. | The MHC Sequencing Consortium. (1999) Nature 401, 921-923[CrossRef][Medline] [Order article via Infotrieve] |
| 19. | Todd, J. A. (1997) Pathol. Biol. 45, 219-227[Medline] [Order article via Infotrieve] |
| 20. | Svejgaard, A., Platz, P., and Ryder, L. P. (1983) Immunol. Rev. 70, 193-218[CrossRef][Medline] [Order article via Infotrieve] |
| 21. | Brown, M. A., Pile, K. D., Kennedy, L. G., Campbell, D., Andrew, L., March, R., Shatford, J. L., Weeks, D. E., Calin, A., and Wordsworth, B. P. (1998) Arthritis Rheum. 41, 588-595[CrossRef][Medline] [Order article via Infotrieve] |
| 22. |
Schaffer, F. M.,
Palermos, J.,
Zhu, Z. B.,
Barger, B. O.,
Cooper, M. D.,
and Volanakis, J. E.
(1989)
Proc. Natl. Acad. Sci. U. S. A.
86,
8015-8019 |
| 23. |
Ribas, G.,
Neville, M.,
Wixon, J. L.,
Cheng, J.,
and Campbell, R. D.
(1999)
J. Immunol.
163,
278-287 |
| 24. | Aguado, B., and Campbell, R. D. (1999) Biochem. J. 341, 679-689 |
| 25. |
Milner, C. M.,
Smith, S. V.,
Carrillo, M. B.,
Taylor, G. L.,
Hollinshead, M.,
and Campbell, R. D.
(1997)
J. Biol. Chem.
272,
4549-4558 |
| 26. | Simmons, D., and Seed, B. (1988) J. Immunol. 141, 2797-2800[Abstract] |
| 27. | Laemmli, U. K. (1970) Nature 227, 680-685[CrossRef][Medline] [Order article via Infotrieve] |
| 28. |
Aguado, B.,
and Campbell, R. D.
(1998)
J. Biol. Chem.
273,
4096-4105 |
| 29. | Chothia, C., Gelfand, I., and Kister, A. (1998) J. Mol. Biol. 278, 457-479[CrossRef][Medline] [Order article via Infotrieve] |
| 30. | Parodi, A. J. (2000) Biochem. J. 348, 1-13 |
| 31. |
Zhao, R.,
and Zhao, Z. J.
(2000)
J. Biol. Chem.
275,
5453-5459 |
| 32. | Taylor, L. S, Paul, S. P., and McVicar, D. W. (2000) Rev. Immunogenet. 2, 204-219[Medline] [Order article via Infotrieve] |
| 33. |
Wu, J.,
Cherwinski, H.,
Spies, T.,
Phillips, J. H.,
and Lanier, L. L.
(2000)
J. Exp. Med.
192,
1059-1068 |
| 34. | Lanier, L. L., Corliss, B., Wu, J., and Phillips, J. H. (1998) Immunity 8, 693-701[CrossRef][Medline] [Order article via Infotrieve] |
| 35. | Stepp, S. E., Schatzle, J. D., Bennett, M., Kumar, V., and Mathew, P. A. (1999) Eur. J. Immunol. 29, 2392-2399[CrossRef][Medline] [Order article via Infotrieve] |
| 36. |
Schatzle, J. D.,
Sheu, S.,
Stepp, S. E.,
Mathew, P. A.,
Bennett, M.,
and Kumar, V.
(1999)
Proc. Natl. Acad. Sci. U. S. A.
96,
3870-3875 |
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