Originally published In Press as doi:10.1074/jbc.M106443200 on October 23, 2001
J. Biol. Chem., Vol. 277, Issue 1, 148-154, January 4, 2002
Escherichia coli Produces Phosphoantigens Activating
Human 
T Cells*
Juliane
Feurle
§,
Eric
Espinosa¶,
Susanne
Eckstein
,
Frédéric
Pont¶,
Volker
Kunzmann
,
Jean-Jacques
Fournié¶
,
Markus
Herderich**
, and
Martin
Wilhelm
§§
From the
Medizinische Poliklinik der Universitaet
Wuerzburg, Klinikstrasse 6-8, 97070 Wuerzburg, Germany, ¶ INSERM
U395 and IFR Claude de Préval, CHU Purpan, BP3028, 31024 Toulouse, France, and ** Lehrstuhl für
Lebensmittelchemie, Universitaet Wuerzburg, Am Hubland,
97074 Wuerzburg, Germany
Received for publication, July 10, 2001, and in revised form, October 22, 2001
 |
ABSTRACT |
Human V
9
2 T lymphocytes are suggested to
play an important role in the immune response to various microbial
pathogens. In contrast to 
T cells, 
T lymphocytes
recognize small, non-protein, phosphate-bearing antigens
(phosphoantigens) in a major histocompatibility complex-independent
manner. Four different phosphoantigens termed TUBag1 to TUBag4 with a
common 3-formyl-1-butyl-pyrophosphate moiety and
isopentenyl-pyrophosphate have been isolated and identified from
mycobacteria. However, natural occurring 
T cell ligands from
other bacterial species were not characterized so far. Here, we
describe the structural identification of the two compounds responsible
for the 
T cell-stimulating capacity of Escherichia coli as similar to the mycobacterial phosphoantigens
3-formyl-1-butyl-pyrophosphate and its
Mr 275 homologue TUBag2. In addition,
E. coli phosphoantigens exert bioactivities on 
T
cells with similar potencies to the mycobacterial phosphoantigens at
5-15 nM concentration. Furthermore, our results clearly
prove that the deoxyxylulose 5-phophate pathway (also referred to as
Rohmer metabolic route of isoprenoid biosynthesis) is essential for the
biosynthesis of the phosphoantigens in E. coli. Because
this pathway is absent from human cells, it proves an ideal target for
focusing efficiently the antimicrobial selectivity of human 
T lymphocytes.
 |
INTRODUCTION |
Human V
9V
2 T lymphocytes are considered to play an important
role in the immune response to various microbial pathogens. In contrast
to 
T cells, 
T lymphocytes recognize small, non-protein, phosphate-bearing antigens (phosphoantigens) in a major
histocompatibility complex-independent manner. These phosphoantigens
are produced by different Gram-positive and Gram-negative bacteria as
well as by eukaryote parasites (1). Mycobacterium
tuberculosis produces four different phosphoantigens termed
TUBag11 to TUBag4 wherein TUBag1
and TUBag2 are phosphatase-sensitive pyrophosphate monoesters, whereas TUBag3 and TUBag4 are nucleotide conjugates of TUBag1 (2). These compounds are active for stimulation of
human 
cells at 5-15 nM concentration and have been
found not only in M. tuberculosis but also in most other
mycobacterial species. Although complete identification of their
structure was recently achieved by elucidation of their common
3-formyl-1-butyl-pyrophosphate (3fbPP) moiety (3), isopentenyl
pyrophosphate (IPP) had been characterized as another mycobacterial
phosphoantigen from Mycobacterium smegmatis (4). IPP is a
ubiquitous precursor for vitamins, steroids, and ubiquinones in all
living organisms. However, in the case of Escherichia coli
we found that the 
T cell-stimulating capacity of IPP did not
correlate with its amount in bacterial extracts (5). A different set of
non-phosphorylated microbial metabolites stimulating human 
T
cells is composed of alkylamines, although their selective bioactivity
is most frequently observed within millimolar concentration ranges
(6).
Until recently, biosynthesis of IPP has been thought to rely solely
upon the "classical" mevalonate pathway of isoprenoid biosynthesis.
However, recent studies on the isoprenoid biosynthesis in bacteria,
algae, and plants have led to the discovery of a second metabolic
route, the so-called deoxyxylulose 5-phosphate (DOXP) or Rohmer pathway
(7), which appears to be absent in all animals including man. Key
metabolites of this pathway, e.g. deoxyxylulose 5-phosphate,
2-C-methylerythritol 4-phosphate,
4-diphosphocytidyl-2-C-methylerythritol or
2-C-methylerythritol cyclopyrophosphate (8-10) share a
common carbon skeleton with the mycobacterial TUBag ligands (3).
Furthermore, it was demonstrated that the presence of the Rohmer
pathway in different bacterial species correlates with the
ability of the metabolites to stimulate 
T cells (5). These
observations support the concept that 
T cells discriminate
between self and non-self through the recognition of specific
biosynthetic routes and, therefore, contribute to the specific immune
response to bacteria and parasites (11).
Although the presence of phosphoantigens was evidenced in
Plasmodium falciparum (12), Francisella
tularensis (13), Viscum album (14, 15), and
Brucella suis (16), few non-mycobacterial phosphoantigens
have been fully characterized so far. In the current study we focused
on isolating and characterizing 
T cell stimulating ligands from
E. coli. We describe here the structural identification of
these E. coli antigens as similar to the mycobacterial
phosphoantigens. Furthermore, the relation of these bacterial antigens
to the Rohmer metabolic pathway of isoprenoid biosynthesis is
demonstrated by use of a selective inhibitor.
 |
MATERIALS AND METHODS |
Chemicals Reagents--
1-Deoxyxylulose was
synthesized and characterized using 1H and 13C
spectroscopy as well as gas chromatography/mass spectrometry as
described previously (5). Prof. H. Seto, University of Tokyo, Japan,
kindly provided 2-C-methylerythritol,
2-C-methylerythritol 4-phosphate, and deoxyxylulose
5-phosphate.
4-[2-methyl,2-13C]Diphosphocytidyl-2-C-methylerythritol,
4-[1,2,2',3,4-13C]diphosphocytidyl-2-C-methylerythritol
2-phosphate, and
2-C-[U-13C5]methylerythritol
cyclopyrophosphate were kindly provided by W. Eisenreich, TU
München, Germany. Fosmidomycin was synthesized according to
published methods (17, 18). All intermediates were characterized using
1H and 13C NMR spectroscopy; the final product
additionally was analyzed by ESI-MS.
Bacterial Cultures--
E. coli O:128 isolates were
provided by Prof. J. Hacker, Institut für Molekulare
Infektionsbiologie, Universität Würzburg; E. coli ATCC 11303 cultures were purchased from the German Collection of Microorganisms and Cell Cultures (DSMZ); lyophilized E. coli ATCC 11303 were obtained from Sigma. For feeding experiments
with 2-C-methylerythritol and inhibition tests with
fosmidomycin, E. coli O:128 were cultured in 25 ml of
minimal culture broth as described (5). To partly purify the E. coli antigen(s), E. coli ATCC 11303 were grown in
Luria-Bertani broth (10.0 g of trypton, 5.0 g of yeast extract,
and 5.0 g of NaCl/1000 ml) at 37 °C. Bacteria were
disintegrated in a French press; bacterial debris was removed by
centrifugation, and the supernatant was filtered over 0.22-µm pore-size membranes.
Chromatographic Procedures--
The E. coli extracts
were fractionated on a 20 × 200-cm Q-Sepharose anion-exchange
column (Amersham Biosciences, Inc.) eluted with a 50-500
mM ammonium acetate gradient. The active fractions were
collected and further purified on a 10 × 17-cm diol column (Amersham Biosciences, Inc.) with an acetonitrile/water gradient from
10 to 100% water. After removal of acetonitrile, the active fraction
was desalted by gel chromatography using a Bio-Gel P-2 column (Bio-Rad)
and 200 mM ammonium acetate as eluent. The final step was
an anion-exchange separation on a HigLoad 26/10 Q-Sepharose high
performance column (Amersham Biosciences, Inc.) with a 50 mM-1 M ammonium acetate gradient. The active
fraction was concentrated by lyophilization. The antigen content
of the resulting solution was greatly enhanced by this procedure. Each
chromatographic step was monitored by testing the collected fractions
in the 
proliferation assay.
The bioactive fraction isolated by the above procedure was then finally
separated by HPAEC using a Dionex DX500 (Dionex, Sunnyvale, CA) system
run with the Peaknet 5.1 chromatography software. A CD20 conductimeter
was used downstream of an anion self-regenerating suppressor
(ASRS-ultra, Dionex), which was set in external water mode. A diode
array detector (Spectra System UV 6000LP Thermo Separation Products)
scanning from 200 to 500 nm was coupled downstream online with the
conductimeter. The HPAEC column was a Dionex Ion Pac AS11 column
(4 × 250 mm) equipped with a guard column (4 × 50 mm). The
2 ml/min effluent rate from HPAEC was directed to a fraction collector.
The eluent sequence comprised a binary solvent system involving 0.1 N NaOH (solvent A, prepared from sodium hydroxide 50% (Fisher) and 18 megaohm-cm deionized water (B) with a flow rate of 2 ml/min. The eluting sequence was as follows: 0-2 min isocratic 5% A in 95% B; 2-9 min linear gradient 5-15% A in B; 9-15 min linear gradient 15-35% A in B followed by a final step of
15 min under the initial conditions.
Liquid Chromatography-MS--
HPLC-MS was carried out as
described (19). In brief, chromatography was performed on a Nucleodex
-OH HPLC column, 250 × 4 mm, 5 µm from Macherey-Nagel
(Düren, Germany) with a binary gradient by an Applied Biosystems
140b pump and a rheodyne 7725 injection valve equipped with a 5-µl
sample loop. Solvent A was 5 mM ammonium acetate; solvent B
was acetonitrile. Injection volume was 5 µl, and flow rate was 0.7 ml/min. The following gradient was applied for separation: 0 min 80%
B, 1 min 80% B, 11 min 50% B, 15 min 50% B. Using a post-column
T-splitter, column eluate was split 1:27 between mass spectrometer and
collection outlet.
HPLC-ESI-MS analysis was carried out on a triple stage quadrupole TSQ
7000 mass spectrometer with an ESI interface (Finnigan MAT, Bremen,
Germany). Data acquisition and evaluation were conducted on a personal
DECstation 500/33 (Digital Equipment, Unterföhring, Germany)
and ICIS 8.1 software (Finnigan MAT). Nitrogen served as the sheath
gas, and argon served as the collision gas. The following ESI
parameters were used: negative mode, capillary voltage 4 kV, capillary
temperature 200 °C, sheath gas (N2) 60 p.s.i., scan
m/z 120 to 500 in 1 s, molecular ion m/z of
IPP [M-H]
245. For precursor ion experiments conditions
were as follows: negative mode, daughter ions m/z 79 and
m/z 97, CID 18 eV, collision gas 1.8 mTorr Ar, Q3 scan
m/z 100 to m/z 1000 in 3 s. Selected reaction monitoring experiments were done in negative mode, precursor ion m/z of 3fbPP [M-H]
261, daughter ion
m/z 159 [HP2O6]
, CID
15 eV; precursor ion m/z of TUBag3
[M-H]
567, daughter ion m/z 261, CID 25 eV, scan time 1 s.
Nanospray MS--
The bioactive HPAEC fractions were collected
and analyzed by nano-ESI-ITMS with an LCQ ion-trap mass
spectrometer (20-22) (Finnigan MAT, San Jose, CA). A commercial
nanospray ESI source (23, 24) (The Protein Analysis Co., Odense,
Denmark) was used with palladium and gold-coated glass capillaries (The
Protein Analysis Co), which were positioned using a stereomicroscope at
1 mm from the entrance hole of the heated transfer capillary. The glass
capillaries were filled with 5 µl of sample. Nebulizer gas was not
necessary in this spray mode. The nanospray needle voltage was set to
700 V. The heated transfer capillary was kept at a temperature of
150 °C. Samples were analyzed in the negative ion mode, with maximum ion collection time set at 800 ms and two microscans summed per scan.
The full scan mass range was m/z 60-500. For
MS2 experiments (tandem mass spectrometry), ions were
isolated with 2-Da windows, and the collision energy was 25 eV. The
software used was Navigator 1.2 from ThermoQuest (San Jose, CA).
Cell Lines--

cell lines were obtained as follows.
Lymphocytes were isolated from peripheral blood obtained from healthy
donors on Ficoll-Paque PLUS (Amersham Biosciences, Inc.) and washed
three times before use. Polyclonal V
9V
2 T cell lines were
obtained by 15 days of culture of PBMC (106/ml) in complete
RPMI 1640 medium with Glutamax-I (Life Technologies, Inc.),
supplemented with 10% AB human serum, 25 mM Hepes, 1 mM sodium pyruvate, 100 units/ml penicillin G, and 100 µg/ml streptomycin in the presence of purified
3-formyl-1-butylpyrophosphate (10 nM (3)) plus 100 units/ml
interleukin-2 (Sanofi-Synthélabo). Expansion of V
9V
2
T cells was followed by cytometric analysis as described below, and
only cell lines having more than 95% TCR V
2-positive cells were
used for subsequent experiments.
Lymphocyte Proliferation--
The 
T cell proliferation
assay was described previously (25). Briefly, cells from patients with
more than 90% B cells in the mononuclear cell fraction in peripheral
blood diagnosed as having a leukemic B cell lymphoma of low malignancy
(B-CLL) were used as bystander cells. Cells from B cell lymphoma and
mononuclear cells from healthy donors (PBMC) were isolated from
heparinized peripheral blood by Ficoll-Hypaque density centrifugation
(Amersham Biosciences, Inc.). Cells were washed three times with
Hanks' buffer supplemented with 1% heat-inactivated fetal calf serum and cryopreserved in liquid nitrogen until use. 5 × 104 PBMC were cultivated in 96-well round-bottom microtiter
plates (Nunc, Wiesbaden, Germany) together with 1 × 105 B-CLL in 100 µl of RPMI 1640 medium/well supplemented
with 2 mM glutamine, 100 µg/ml penicillin-streptomycin
(all purchased from Life Technologies, Inc.), 10% pooled human AB
serum, and 100 units/ml interleukin 2. Cells incubated with medium
alone served as negative control, and cells incubated with IPP (Sigma) served as positive control.
Phenotype Analysis by Flow Cytometry--
Cells were harvested
on day 3 (for measurement of CD25 expression) or on day 7 (for
proliferation assay) and double-stained with fluorescein
isothiocyanate- or phycoerythrin-conjugated monoclonal CD3, CD25, or
TCR pan-
antibodies, respectively (Coulter Immunotech, Krefeld,
Germany). 5 × 103 cells from each sample were
analyzed using a FACScan supported with Cellquest as acquisition and
data analysis software (Becton Dickinson, Heidelberg, Germany). The
lymphocytes were gated using forward/sideward scatter gating.
Measurement of TNF-
Secretion--
TNF-
released by
activated 
T cells was measured by a bioassay using the
TNF-
-sensitive cells WEHI-13VAR (ATCC CRL-2148) as follows.
104 
T cells/well were incubated with the 10 µl of
the tested fractions in 100 µl of culture medium plus 25 units of
interleukin 2/well for 24 h at 37 °C. 50 µl of the culture
supernatant were then added to 50 µl of WEHI cells plated at 3 × 104 cells/well in culture medium plus actinomycin
D (2 µg/ml) and LiCl (40 mM) and incubated 20 h at
37 °C. Viability of WEHI cell was then measured by
3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT)
assay; 50 µl of MTT (Sigma; 2.5 mg/ml in phosphate-buffered saline)/well were added, and after 4 h of incubation at 37 °C, 50 µl of solubilization buffer (SDS 20%, dimethylformamide 66%, pH
4.7) were added, and absorbance (570 nm) was measured. For each sample
tested in triplicate, TNF-
release was then deduced from a
calibration curve obtained using human recombinant TNF-
(PeproTech,
Inc, Rocky Hill, NJ).
 |
RESULTS |
E. coli Produces Specific Antigen-activating Human 
T
Cells--
To assess the 
T cell stimulatory capacity of
E. coli, bacteria were grown to late-log phase,
disintegrated in a French press, ultrafiltered (<3 kDa), and the
extracts were subjected to a 
T cell proliferation assay in
presence of exogenous interleukin 2. E. coli low molecular
weight preparations (LMWPs) induced activation (CD25 expression) as
well as outgrowth of 
T cells (Fig.
1A). The antigenic activity
could be totally abrogated by treatment with alkaline phosphatase (Fig.
1B). Therefore, the 
T cell-stimulating bioactivity
from E. coli LMWPs is solely due to phosphoantigens. However, in contrast to the nucleotidic mycobacterial antigens TUBag3
and TUBag4, which are only susceptible to a combined treatment with
nucleotide pyrophosphatase and alkaline phosphatase, the bacterial
antigen(s) under study seems to bear a terminal phosphate moiety
essential for antigenic activity such as IPP, 3fbPP, or synthetic
bioactive alkylpyrophosphates (4) and phosphorylated carbohydrates
(26). In E. coli ATCC 11303, the possibility of a mixture of
nucleotidic conjugates together with phosphomonoesters was ruled out by
sequential treatment of the LMWPs with alkaline phosphatase and
nucleotide pyrophosphatase. As shown in Fig. 1B, the 
T cell stimulatory activity in E. coli ATCC 11303 is
sensitive to alkaline phosphatase alone, demonstrating the sole
presence of an antigen composed of a terminal (pyro) phosphate group as in IPP or 3fbPP.

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Fig. 1.
Stimulation of human PBMC with E. coli low molecular weight preparation leads to activation
(CD25 expression) and proliferation of
 T lymphocytes; treatment with
alkaline phosphatase (AP) alone but not with
nucleotide pyrophosphatase (PPase) abolishes this
activity. A, human PBMC were cultured with medium alone
or E. coli LMWPs for 3 or 7 days. Lymphocytes were gated
according to their side scatter and forward scatter parameters.
The percentage of  TCR-positive cells was determined by 2-color
flow cytometry using phycoerythrin anti-CD3 and fluorescein
isothiocyanate anti- TCR monoclonal antibody after 7 days of
culture, and the percentage of CD25 expressing  T cells using
fluorescein isothiocyanate anti- TCR and phycoerythrin anti-CD25
monoclonal antibody was determined after 3 days. The results are
representative of several experiments with PBMC of different donors.
B, E. coli LMWPs were treated with alkaline
phosphatase and/or nucleotide pyrophosphatase. After each cleavage
step, the enzyme was removed by ultrafiltration (<3 kDa). Activation
of  T cells was assessed by flow cytometric analysis of CD25 and
pan- TCR expression on day 3; results are expressed as the
percentage of CD25-positive cells of all  TCR-positive cells ± S.D.
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To determine whether the ubiquitous IPP was responsible for the
observed stimulation of 
T lymphocytes by E. coli, we
selectively monitored this compound in LMWPs by LC-MS. For this aim, a
high performance liquid chromatography was coupled online to an
electrospray ionization tandem mass spectrometry
(HPLC-ESI-MS2) through a post-column T-splitter. By
analyzing LMWPs with by this device, we attempted to correlate the
detection of IPP (m/z 245 for [M-H]
in
negative mode) with its bioactivity on 
T cells. Although LMWP
bioactivity was well detected in these experiments (Fig. 2A), we could not detect
relevant IPP ion species in parallel (not shown). By comparing to an
LMWP sample spiked with 2 mM synthetic IPP (Rt 10.05 min,
Fig. 2B), the 
T cell-activating component appeared
chromatographically close to, but separated, from IPP. Therefore, the
bioactive LMWP component is distinct from IPP.

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Fig. 2.
HPLC-ESI-MS analysis and correlated
biological activity of partially purified E. coli
O:128 LMWPs. A,  T cell-stimulating
activity of HPLC-MS fractions of E. coli sample. Column
eluates were split between the ESI interface and the collecting outlet
(split rate 1:27), and 1-min fractions were collected and subjected to
the  T cell proliferation assay. Activation of  T cells was
assessed by flow cytometric analysis of CD3 and pan- TCR
expression on day 7; results are expressed as the percentage of 
TCR-positive cells of all CD3-positive cells ± S.D. B,
mass chromatogram for m/z 245 ([IPP-H] ) in
an E. coli sample spiked with 0.5 mg/ml IPP.
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To selectively trace in the E. coli LMWPs any compound
carrying a terminal phosphate, we applied a phosphate-specific
precursor ion scan. Because we could not detect any unknown
phosphate-bearing compounds co-eluting with the 
T cell
stimulatory activity (not shown), the bioactive antigen concentration
in LMWPs could be estimated at 10 nM or lower. This range
of bioactivity is about 100 times superior to that of IPP in similar
bioassays (data not shown) but appeared similar to these reported for
the mycobacterial phosphoantigens (2, 3, 27, 28). It has been shown
recently that 3fbPP (formerly referred to as TUBag1) has a molecular
mass of 262 atomic mass units and yields a pyrophosphate fragment
(m/z 159) upon tandem mass spectrometry (3). To probe
whether a related compound was present in LMWPs, we conducted a
selected reaction-monitoring experiment using this fragmentation
pattern and detected a compound co-eluting with the 
T cell
stimulatory activity (data not shown). Thus, the active compound in
E. coli could be related to 3fbPP. However, an analogous
selected reaction-monitoring experiment scanning for the nucleotidic
derivative 3fb-PPP-uridine (formerly TUBag3, selected reaction
monitoring m/z 567/261) achieved no signal (not shown).
Together these observations confirmed the aforementioned sensitivity of
the LMWP bioactivity to degradation by alkaline phosphatase alone.
E. coli LMWP Antigens for 
T Cells Are Identical to the
Mycobacterial Phosphoantigens 3fbPP and 3-Formyl-1-pentyl-PP
(3fpePP)--
Because evidence for small amounts of 3fbPP in LMWPs was
obtained from the above MS experiments, further chromatographic
separation and enrichment of the bioactive component from LMWPs was
needed. We undertook this by HPAEC with online detection by
conductimetry, UV, and final collection of the fractions (every 3 s) to enable bioactivity-based detection. This was done through
measurement of the TNF-
released by a 
T cell line cultured
24 h with 1/10 of the final volume from the collected fractions
concentrated 10-fold (Fig.
3A). Although the analyzed
fraction appeared to comprise several well identified organic and
inorganic anions such as acetate, chlorine, and a major peak of
N-acetylmannosaminuronic-1-phosphate (14 mM in
the sample), only a minor amount of remaining IPP was detected by
conductimetry. However, the bioactivity for 
T cells was
separated into two consecutive fractions that eluted before IPP, as
already observed in the former HPLC (see Fig. 2). These fractions were
pooled, concentrated 50-fold in water, and analyzed by nanospray MS in
the negative mode (Fig. 3B). Among several other ion
species, only two signals, namely m/z 261 and
m/z 275, corresponded to phosphorylated
structures as revealed by phosphate losses in their subsequent
MS2 spectra. These signals could identify
3-formyl-1-butylpyrophosphate, formerly discovered in mycobacteria and
TUBag2 (3), if the observed signals corresponded to their
pseudomolecular species in negative mode. This assignment was then
confirmed by MS2 of these parent ions, which matched the
reported spectra of pseudomolecular, fully protonated forms of the
natural 3fbPP (Mr 262, formerly referred to as
TUBag1) and TUBag2 antigens (Mr 276) (3). Such acidic forms readily fragment in negative mode when using collision energies of around 18-25 eV. These fragmentation spectra harbor prominent pyrophosphate (m/z 159 and
m/z 177)- and phosphate
(m/z 97 and m/z 79)-derived
signals in addition to a product ion corresponding to each respective
anhydro derivative of the pseudomolecular ion (Fig.
4). The TUBag2 molecule had been detected
in former studies about mycobacterial phosphoantigens. With the same
spectroscopic properties as, but a higher (+14) molecular mass than
3fbPP, it corresponds to its longer chain homologue. We tentatively
position this -CH2- on C3-C4 from the 3fbPP structure and
propose the structure of 3fpePP for this molecule. Based on their
biological activity, molecular mass, and the results of the
MS2 experiments, the E. coli phosphoantigens
present in the LMWP sample are 3fbPP and 3fpePP, identical to the
mycobacterial TUBag1 and TUBag2.

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Fig. 3.
Identification of E. coli
O:128 phosphoantigens in the bioactive LMWP fraction.
A, HPAEC separation of the LMWP fraction detected by UV
absorbance at 210 nm (upper trace), conductimetry
(upper trace), and bioactivity of collected fractions
measured by TNF- release (1 fraction/30 s) in 24-h supernatants from
a  T cell line culture. B, nanospray MS in negative
mode of the pooled bioactive fractions detected above; the
asterisks indicate non-phosphorylated ions.
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Fig. 4.
Identification of 3fbPP and 3fpePP by
nanospray MS2. A, MS2 from the
pseudomolecular anion of m/z 261 in nanospray MS showing the
typical fragmentation of 3fbPP (3), shown above. B,
m/z 275 in nanospray MS showing the typical fragmentation of
TUBag2 (3), tentative structure for 3fpePP based on the molecular ion,
and the corresponding product ions.
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E. coli Pathway of Phosphoantigen Biosynthesis--
We
proposed earlier that the 
T cell-stimulating antigens of
E. coli and of other bacteria might be derived from the DOXP pathway (5). Thus we tested several known metabolites of this biosynthetic route for their capacity to elicit a 
T cell
response. DOXP, 2-C-methylerythritol 4-phosphate (2CMEP),
4-diphosphocytidyl-2-C-methylerythritol, 4-diphsophocytidyl-2-C-methylerythritol 5-phosphate, and
2-C-methylerythrtiol cyclopyrophosphate did not exert any

T cell stimulatory activity in both activation and proliferation
assays (Fig. 5A). Therefore a
direct action of these upstream intermediates of the Rohmer pathway on

T cell activation could be excluded.

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Fig. 5.
Human 
T lymphocytes are not stimulated by early metabolites of the
Rohmer pathway; fosmidomycin, an inhibitor of DOXP reductoisomerase
abolishes  T cell stimulating
activity of E. coli. A, human PBMC were cultured
for 3 days in the presence of 5 µg/ml or 0.5 µg/ml isopentenyl
pyrophosphate or 10-50 µg/ml DOXP, 2CMEP, CDP-2CME, CDP-2CMEP, or
2-C-methylerythritol cyclopyrophosphate
(2CMEcPP). Activation of  T cells was assessed by flow
cytometric analysis of CD25 and pan- TCR expression on day 3. The
results are expressed as stimulation indices. Stimulation index = stimulation with compound stimulation in medium/stimulation
in medium. Stimulation = percentage of CD25-positive cells of all
 TCR-positive cells. B, growth curves and  T
cell-stimulating activity of E. coli O:128 growing with or
without fosmidomycin. Proliferation of  T cells was assessed by
flow cytometric analysis of CD3 and pan- TCR expression on day 7;
results are expressed as the percentage of  TCR-positive cells of
all CD3-positive cells. Comparable results were obtained in two
independent experiments. , A550
E. coli O:128; , A550 E. coli O:128 + 20 µg/ml fosmidomycin. Open bars,
proliferative response of  T cells after incubation with E. coli O:128; closed bars, proliferative response of
 T cells after incubation with E. coli O:128 + 20 µg/ml fosmidomycin.
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However, our previous experiments show that supplementation of E. coli cultures with deoxyxylulose enhances their 
T
cell-stimulating potency (5), suggesting that compounds derived from
the DOXP pathway are responsible for 
T cell activation. To
further probe the relation between the Rohmer pathway and production of
phosphoantigens, we cultured E. coli in the presence of the
dephosphorylated 2-C-methylerythritol (2CME) metabolite from
the DOXP pathway. Bacterial growth rates and the 
T cell
stimulatory capacity of LMWPs from 2CME and control cultures were
compared. No differences in bacterial growth rate and cell numbers were
observed between the cultures with or without 2CME. Unlikely to the
experiments using deoxyxylulose as a supplement, the bioactivity of
2CME LMWPs was not enhanced when compared with control (data not
shown). Thus dephosphorylated 2CME is neither an obligate requirement
for E. coli cell growth nor for phosphoantigen production.
In the Rohmer pathway, 2CMEP is formed from DOXP by the action of an
essential enzyme, the DOXP reductoisomerase, which can be selectively
targeted by the phosphonate inhibitor fosmidomycin (29). Thus E. coli were grown in culture broth with and without this inhibitor,
and both growth rates and phosphoantigen production were measured.
Although fosmidomycin concentrations as high as 20 µg/ml did not make
any difference in cell growth rates, the LMWPs of E. coli
cultured in the presence of fosmidomycin were totally devoid of
activity on 
T cells (Fig. 5B). This effect was not
due to inhibition of 
T cell proliferation by the antibiotic itself (data not shown).
 |
DISCUSSION |

T cells are suggested to play a role as the first line of
defense against various viral, bacterial, and parasitical pathogens. They recognize soluble phosphoantigens from different Gram-negative and
Gram-positive bacteria as well as certain parasites (for review, see
Refs. 30 and 31). To better understand the way of action of this still
enigmatic T cell population, it is important to characterize these
antigens. So far only five phosphoantigens, 3fbPP, TUBag2,
3fb-PPP-uridine, 3fb-PPP-thymidine, and IPP had been identified as
natural occurring 
T cell ligands (2-4, 28). These compounds
were isolated and identified from several mycobacterial species (32),
and they are presumably common to the entire mycobacterial genus. Yet,
IPP represents a ubiquitous metabolic precursor of isoprenoids and
prenylated proteins.
In the present study, we have isolated the two compounds responsible
for the 
T cell-stimulating capacity of E. coli and proved that these phosphoantigens are identical to the mycobacterial metabolite 3-formyl-1-butyl-PP and its Mr 275 homologue TUBag2. By treating E. coli LMWPs with either
alkaline phosphatase or nucleotide pyrophosphatase alone or with both
enzymes sequentially, we demonstrated that no nucleotidic
phosphoantigens such as the mycobacterial 3fb-PPP-uridine or
3fb-PPP-thymidine were present (Fig. 1B). Thus, the 
T
cell-stimulating capacity of E. coli was entirely due to one
or several compound(s) bearing a terminal phosphate, which therefore
are phosphoantigens. Two lines of evidence demonstrated that these
phosphoantigens do not comprise IPP. On the one hand, the 
T
cell-activating compound(s) was chromatographically separated from IPP,
and on the other hand, the E. coli-derived IPP was not
detected in quantities sufficient to exert its bioactivity on 
T
cells (Fig. 2), which is known in the micromolar range (4). This
finding is in agreement with a previous quantification study showing
that the IPP content of E. coli is not high enough to elicit
a 
T cell response (5).
The bioactivities of the E. coli phosphoantigen(s) were
estimated in the nanomolar range on the basis of the titration of bioactivity in partially purified E. coli extracts as
compared with the phosphate detection threshold of
HPLC-ESI-MS2. Therefore, these E. coli
phosphoantigens exert bioactivities on 
T cells with similar
potencies to the mycobacterial phosphoantigens (2). Furthermore, a
selected reaction-monitoring experiment scanning for a typical
fragmentation reaction of 3-formyl-1-butyl-pyrophosphate (precursor
ion, m/z 261 pseudo molecular ion; daughter ion,
pyrophosphate moiety) resulted in a signal co-eluting with the 
T
cell-stimulating activity of the E. coli sample, indicating
that the E. coli phosphoantigens could comprise a
molecular isobar of 3fbPP.
The enrichment of E. coli phosphoantigens in a bioactive
fraction from HPLC-separated LMWPs was undertaken by subsequent HPAEC monitored by bioassay. Here again, although a minute amount of IPP
could be detected conductimetrically, this product was separated from
the phosphoantigens, which eluted earlier from the column. The direct
MS analysis of the pooled bioactive fractions by nanospray MS indicated
the presence of both 3fbPP (Mr 262) and its
longer chain homologue TUBag2 (Mr 276). These
identifications were then confirmed by the complete MS2
fragmentation map of these parent ions (Fig. 4). The lower mass compound was 3fbPP, whereas the second phosphoantigen was tentatively identified as 3fpePP. As indicated by the above enzyme assays, no
nucleotidic analogue of phosphoantigens was present in these extracts,
so E. coli phosphoantigens are only composed of 3fbPP and
3fpePP.
In the third part of this study, we studied the metabolic pathway
involved in biosynthesis of these phosphoantigens by E. coli. Like mycobacteria, E. coli synthesize IPP and
subsequent isoprenoids by the Rohmer pathway (33, 34). In agreement
with several other reports, we demonstrate here that this metabolic route (also referred to as DOXP pathway) is responsible for
phosphoantigen biosynthesis in E. coli. Because DOXP has
also been described as a precursor for the biosynthesis of thiamin and
pyridoxol (35, 36), the first specific metabolite of the Rohmer pathway
is 2-C-methylerythritol 4-phosphate (CMEP, Fig.
6). Hence, we conducted E. coli feeding experiments using 2-C-methylerythritol
(CME) as a supplement of the culture medium. Although
bacterial culture supplemented with the dephosphorylated deoxyxylulose
intermediate enhances the ability of E. coli LMWPs to
stimulate 
T cells (5) (indicated by reaction 1 in
Fig. 6), we find here that similar experiments with
2-C-methylerythritol do not cause such effects (data not
shown; see reaction 2 in Fig. 6). These observations do not
necessarily argue against phosphoantigen production through metabolites
of the Rohmer pathway. Others have already reported extremely low
incorporation rates of free 2CME as compared with deoxyxylulose in
E. coli and in other species. This could be due to missing a
specific kinase for 2CME, whereas another kinase able to phosphorylate
deoxyxylulose seems to be present in bacteria (Ref. 10; see Fig.
6).

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|
Fig. 6.
Biosynthesis of E. coli
phosphoantigens. Biosynthesis of isopentenyl pyrophosphate,
thiamin, and pyridoxal involve metabolites from the Rohmer pathway that
are structurally related to 3fbPP and 3fpePP (tentative structure for
this latter). This metabolic route is absent from animal cells
but present in bacteria, green algae, higher plants, and apicoplasts
from Plasmodium spp parasites.
|
|
Because it was not possible to proof the involvement of 2CMEP in the
biosynthesis of the 
T cell-stimulating antigen by direct
supplementation of 2CME, we attempted to inhibit DOXP reductoisomerase instead. This enzyme catalyzes the formation of 2CMEP from DOXP, probably through involvement of an aldehydic intermediate. The antibiotic fosmidomycin inhibits this step of the DOXP pathway (8).
Here we have found that addition of fosmidomycin to E. coli
cultures completely abolishes 
T cell-stimulating activity (Fig.
5B). This clearly proved that formation of 2CMEP and, thus, the Rohmer pathway is essential for the biosynthesis of the
phosphoantigens in E. coli. This conclusion, based on
biochemical studies, is in perfect agreement with conclusions drawn by
others from genetic lines of evidence. In recently published
experiments, it is demonstrated that disruption of dxr, a
gene coding for DOXP synthase, and of gcpE, a gene of the
DOXP pathway with unknown function, abrogates the ability of E. coli extracts to stimulate 
T cell proliferation (37).
The data presented here allow us to state that the E. coli
phosphoantigens 3fbPP and 3fpePP are either authentic metabolites of
the Rohmer pathway to IPP downstream of 2CMEP or that their formation
branches somewhere from this route. Because the bioactive 3fbPP and
3fpePP found in E. coli were already characterized as mycobacterial phosphoantigens, it seems very likely that they were
formed by the same way. However, the nucleotide-containing antigens of
mycobacteria 3fb-PPP-thymidine and 3fb-PPP-uridine may most likely
arise from a side reaction, as no corresponding compounds were found in
E. coli so far. Such a side reaction is expected to bind
3fbPP to a nucleotide moiety, most likely as an energetically favorable
carrier. Interestingly enough, the E. coli gene
ygbB, an ortholog of the microbial gene ygbP
involved in terpenoid biosynthesis, was recently characterized as
coding for an enzyme of the DOXP pathway that hydrolyzes the
nucleotidic conjugate
4-diphosphocytidyl-2C-methyl-D-erythritol-2-phosphate into 2C-methyl-D-erythritol-2,4-cyclodiphosphate
and CMP (38). In this regard, it is highly conceivable that the
mycobacterial phosphoantigens 3fb-PPP-thymidine and 3fb-PPP-uridine
arise from related enzymatic activities encoded by mycobacterial
orthologues of some ygb genes missing from the E. coli genome.
A common feature of many microorganisms recognized by 
T cells is
their ability to synthesize isoprenoids via the DOXP pathway. Indeed,
this pathway is absent from human or primate cells, which all share the
TCR V
9V
2-specific reactivity to phosphoantigens. Therefore, the
Rohmer metabolic route proves an ideal target for focusing efficiently
the antimicrobial selectivity of major histocompatibility complex-unrestricted human T lymphocytes.
 |
ACKNOWLEDGEMENTS |
We thank Prof. Haruo Seto and Prof. Wolfgang
Eisenreich for providing samples of DOXP pathway intermediates. In
addition, we thank Prof. Peter Schreier from the Chair of Food
Chemistry for use of his lab.
 |
FOOTNOTES |
*
This work was supported by Interdisziplinäres Zentrum
für klinische Forschung der Universität Würzburg
Grant 01KS9603 (to J. F., S. E., and M.W.) and the Fonds der
Chemischen Industrie (to M. H.).The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
Present address: 4SC AG, Am Kloperspitz 19, 82152 Planegg, Germany.
Supported by institutional grants from INSERM, l'ARC
ARECA, and the European Cluster for tuberculosis vaccine.

Present address: The Australian Wine Research Institute, P. O.
Box 197, Glen Osmond SA 5064, South Australia.
§§
To whom correspondence should be addressed. Tel.: 931-201-7042;
Fax: 931-201-7073; E-mail: wilhelm@medizin.uni-wuerzburg.de.
Published, JBC Papers in Press, October 23, 2001, DOI 10.1074/jbc.M106443200
 |
ABBREVIATIONS |
The abbreviations used are:
TUBag, M.
tuberculosis antigens;
3fbPP, 3-formyl-1-butyl-pyrophosphate;
IPP, isopentenyl pyrophosphate;
DOXP, deoxyxylulose 5-phosphate;
ESI-MS, electrospray-ionization mass spectrometry;
MS2, tandem mass spectrometry;
HPAEC, high pH anion exchange chromatography;
HPLC, high performance liquid chromatography;
PBMC, peripheral
mononuclear blood cells;
TCR, T cell receptor;
B-CLL, leukemic B cell
lymphoma of low malignancy;
TNF-
, tumor necrosis factor
;
LMWP, low molecular weight preparation;
2CME, 2-C-methylerythritol;
2CMEP, 2CME 4-phosphate;
3fpePP, 3-formyl-1-pentyl-pyrophosphate;
CID, collision-induced
dissociation.
 |
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