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J. Biol. Chem., Vol. 277, Issue 1, 402-406, January 4, 2002
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From the Division of Pediatric Hematology/Oncology, Children's Hospital and Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts 02115
Received for publication, September 21, 2001, and in revised form, November 1, 2001
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ABSTRACT |
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Animal pigmentation mutants have provided rich
models for the identification of genes modulating pathways from
melanocyte development to melanoma. One mouse model is the
underwhite locus, alleles of which manifest altered
pigmentation of both eye and fur, sometimes in an
age-dependent fashion. Here we show that the mouse homolog
of a recently identified gene whose mutation produces Japanese
gold-colored fish, medaka b, maps to the mouse underwhite locus. We identify distinct mutations of this
gene, known as Aim-1, in three underwhite mouse
alleles and find that structure/function differences correlate with
recessive versus dominant inheritance. The human ortholog
of AIM-1 was originally identified as a melanocyte-restricted antigen
that is recognized by autologous T cells from a patient with melanoma.
We also provide evidence that AIM-1 is transcriptionally modulated by
MITF, a melanocyte-specific transcription factor essential to
pigmentation and a clinical diagnostic marker in human melanoma.
Although AIM-1 appears to reside downstream of MITF, chromatin
immunoprecipitations do not reveal binding of MITF to a 5'-flanking
region containing histone 3 acetylation, indicating that MITF either
acts indirectly on AIM-1 or it binds to a remote regulatory sequence.
Nevertheless, MITF links AIM-1 expression and the
underwhite phenotype to a transcriptional network central
to pigmentation in mammals.
A recent study reported a novel transporter protein AIM-1 that is
responsible for the pigment phenotype of medaka b gold-fish mutants (1). In this fish, mutations in Aim-1 produce
albino-like depigmentation of black melanophores, leaving gold-red
xanthophores, white leukophores, and silver iridophores as the
remaining pigmented cells. The gene product is predicted to be a
12-transmembrane-transporter protein that shows homology to yeast and
plant sucrose transporters (1). Human AIM-1 has been previously
identified as a melanoma antigen that was recognized by autologous,
patient-derived T cells (2). Its expression was shown to be restricted
to the melanocyte lineage by Northern analysis (2). Murine
Aim-1 is located on chromosome 15 in a region containing the
pigmentation locus, underwhite. A series of mouse mutants
has been described for this locus. All are characterized by various
degrees of pigment reduction (from partial to complete albinism) in the
eyes and fur (3).
MITF is a tissue-restricted transcription factor essential to
melanocyte development. It binds the canonical E-box sequence CACGTG as
well as the non-palindromic sequence CACATG. The major pigmentation
hormone, melanocyte-stimulating hormone, up-regulates MITF
expression through cAMP signaling followed by cAMP-response element-binding protein phosphorylation and activation of the melanocyte-specific MITF promoter and may modulate multiple
pigmentation genes through up-regulating MITF expression (4, 5). The three major pigmentation enzymes tyrosinase, TYRP1, and DCT, all contain consensus MITF DNA binding elements that are conserved across
species and are thought to be transcriptional targets of MITF (6-8).
In humans, germline heterozygous MITF mutation produces the
pigmentation-deafness condition Waardenburg Syndrome IIA (9) and Tietz
syndrome (10, 11), manifesting pigmentation disturbances and deafness
due to inner ear melanocyte deficiency (12). Interestingly, MITF
expression is usually (if not always) maintained in human melanoma
specimens, and it is increasingly used as a histopathologic marker for
melanoma diagnosis (13-17).
We BLASTed the human AIM-1 mRNA sequence (accession number
AF172849) against the human genome and located the gene to chromosome 5. Examination of the homologous region in the mouse genome revealed a
previously described hypopigmentation locus, underwhite.
Here experiments were carried out to explore a potential link between Aim-1 and the underwhite mutants. Distinct
mutations in Aim-1 were found in three underwhite
alleles, including a frameshift, as compared with wild-type controls.
In addition, evidence is presented that suggests that the global
transcriptional regulator of pigmentation, MITF, also resides upstream
of Aim-1, linking this gene to the major pigmentation
pathway in melanocytes.
BLAST--
Human AIM-1 mRNA sequence (accession
number AF172849) was BLASTed against the Human Genome. Mouse
Aim-1 mRNA sequence (accession number AF360357) was
BLASTed against the mouse Trace Archive.
Genomic DNA PCR--
Genomic DNA from C57BL/6J and
homozygous uw, uwd, and
UwDbr mice was obtained from the Jackson
Laboratory (Bar Harbor, ME). Genomic DNA from adult male BALB/c kidney
tissue was purchased from CLONTECH. Primer pairs
spanning each exon were designed as follows. Exon 1: 5'-CTG AGG ACC ACG
CAA GAA GGC TAT T-3' and 5'-CCA GGC TCG GGG TCA TCC AAA GGT G-3'. Exon
2: 5'-TAA AAC CCA ACC TAC AAA ACC AAA ACA-3' and 5'-GGC ACT TCC TAT CAA
CTG ACC CAT TC-3'. Exon 3: 5'-GAA GGT CTG TGC ATG GTG GGA AAT AAA C-3'
and 5'-AGG CAA GAG AAC CAC TGA GGC ACA AAA T-3'. Exon 4: 5'-TCT GGC TGT
GGC TCT GAC TCT GA-3' and 5'-CAT GCC ATT CCT GTT TCC ACT TAG-3'. Exon 5: 5'-GTG CTG TCT GCT TGA ACT CTG G-3' and 5'-ATA TAA AAT CTG GAT CCT
GCT GCT A-3'. Exon 6: 5'-CTC AGT ATC AAA GGA AGT CGT CTA AAA-3' and
5'-TTG GGG TCA CTA TCA TTG TCC TAA AA-3'. Exon 7: 5'-GCC CTG TGC
GCT AGT GCC CTG TA-3' and 5'-AGT TGC TGT GCT TTC GGA ATG AGA
CCT-3'.
Chromatin Immunoprecipitation--
Chromatin immunoprecipitation
assay (ChIPs)1 was performed
in human primary melanocytes (provided by Dr. Ruth Halaban, Yale University), SKMEL5, or IMR90 cells (ATCC) grown in logarithmic phase.
Cells were harvested by scraping, homogenized in a hypotonic buffer (10 mM Tris-HCl, pH 7.4, 15 mM NaCl, 60 mM KCl, 1 mM EDTA, 0.1% Nonidet P40, 5%
sucrose, 1× CompleteTM proteinase inhibitor mixture
(Roche)) on ice using a Dounce homogenizer. The nuclei were isolated by
centrifugation onto a 10% sucrose pad and then cross-linked with 1%
formaldehyde in phosphate-buffered saline for 20 min at room
temperature with gentle shaking. Nuclei were then spun down and
resuspended in ChIPs buffer (10 mM Tris-HCl pH 7.4, 100 mM NaCl, 60 mM KCl, 0.1% Nonidet P40, 1×
proteinase inhibitors) and sonicated by two 1-min pulses using a Fisher
dismembranator fitted with a micro-tip on ice. Antibodies against USF1
(C-20, Santa Cruz), USF2 (N-18, Santa Cruz), c-Myc (N-262X, Santa
Cruz), polyclonal rabbit anti-MITF, or acetylated Histone H3 (Upstate) were then added to a 10-fold ChIPs buffer diluted sample and incubated on a nutator for 3 h at room temperature. Subsequently,
Ultralink protein A/G beads (Pierce) were added to the sample and a
control sample and incubated for an additional hour. Immunoprecipitates were then washed twice with ChIPs buffer, twice with 500 mM
NaCl ChIPs buffer and once with TE, pH 8. The immunoprecipitates were released from the beads by incubating at 65 °C for 20 min in 1% SDS/TE, and proteins were digested by proteinase K treatment
side-by-side with an additional unprecipitated sample as
input control. Cross-links were released by heating at
70 °C for 10 h, DNA recovered by extraction with phenol and
chloroform at high salt (0.6 M sodium acetate, pH 8), and
then ethanol precipitated. Semi-quantitative PCR was then performed on
samples to amplify fragments spanning the 5'- or 3'-adjacent region to
the E box repeat (see Fig. 2a). The forward and reverse
primers for the 5'-region are 5'-TGT TAA GTA CCA CGA GGA GAA ATA-3' and
5'-ACA TGG CCG TGA GGT AAT AAA G-3', respectively, (annealing
temperature 59 °C). The primers for the 3'-region are 5'-CAG CAC CAC
CCC CTC CCT CTC ATC ATA AC-3' and 5'-CCA CAG AGT CAA AGG GGC CAT CAT
CAG C-3' (annealing temperature 65 °C). The primers for the
MITF-positive ChIP control region (intron 1 of PMEL17) are
5'-CAT AAG ATA CCC CAT TCT TTC TCC ACT T-3' and 5'-GAG AAT GTG GTA TTG
GGT AAG AAC AC-3' (annealing temperature 57 °C). PCR was carried out
for 45 s at 94 °C, 45 s at annealing temperatures as
indicated for each primer set, and 90 s at 72 °C for a total 35 cycles with Taq polymerase (Fisher).
Adenovirus Infection and RNA Preparation--
Null adenovirus
was purchased from Q-BIOgene. Adenoviruses encoding wild-type MITF,
dominant-negative mutant MITF, or vector control encoding a fusion of
green fluorescence protein-Wee1 for nuclear localization, were
generated as previously described (18). Briefly, 106 human
SKMEL5 melanoma cells were plated per 100-mm plate. On the second day,
cells were overlaid with 2 ml of serum-free F10 media containing 10 mM MgCl2, and concentrated adenovirus was added
at multiplicity of infection of 100 for each virus. The cells were
incubated at 37 °C for half an hour after which virus was removed
and fresh full media was added. Total RNA was isolated with
RNAqueousTM-4PCR kit (Ambion 1914) at 48 and 72 h
after infection.
Real-time/Quantitative PCR--
The real-time PCR primers for
human AIM-1 were 5'-CCTGGGCTTTCTGGTCAACA-3' and
5'-ACCGCAGACGCTGTGATCA-3'. The probe for human AIM-1 were
5'-6-FAM-AGCCGGGACCGTTGTCGTCG-TAMRA-3' (PE Biosystems). The total
volume of each reaction is 25 µl including 12.5 µl 2× Master Mix
without UNG (uracil-N-glycosylase), 0.625 µl MultiScribe Reverse
Transcriptase and RNase inhibitor (PE Biosystems), 0.5µl of each
primer (10 µM stock), 0.25 µl of the probe (5 µM stock) and 1 µl of the template at 100 ng/µl.
Reverse transcription proceeded at 48 °C for 30 min. Then 40 cycles
of PCR reaction were carried out at 95 °C for 15 s and at
60 °C for 1 min. Real-time PCR was carried out using ABI PRISM 7700 Sequence Detection System (Applied Biosystems) with analysis using the
integrated Sequence Detection System Software Version 1.7.
Aim-1/B Is Mutated in uw, uwd, and UwDbr Mice--
We
used human map viewer (ncbi.nlm.nih.gov/) to determine that the
human ortholog of Aim-1 is located on chromosome 5p. We identified a region homologous to the human Aim-1 locus on
mouse chromosome 15 and noted that this site maps to the murine
underwhite locus (ncbi.nlm.nih.gov/Homology/and Ref. 19).
The complete mouse Aim-1 cDNA sequence (accession
number AF360357) was BLASTed against the mouse Trace Archive to
identify the exon/intron boundaries (Table
I). Primer pairs located in the intron
regions were designed to span individual exons. Each exon was amplified
from the genomic DNA of uw, uwd and
UwDbr mice as well as the control C57BL/6J and
BALB/c strains. All PCR products matched the predicted lengths (data
not shown). DNA sequencing identified mutations in all three mutant
alleles, but none of their wild-type controls (Fig.
1a). The uw mutant
was found to harbor a 7-base pair deletion in Exon 3 of
Aim-1 (Fig. 1a), which results in a 43-amino acid
frameshift followed by a premature stop at codon 308 (Fig. 1,
b and c). The uw allele thus encodes a
protein that lacks the C-terminal 6 transmembrane domains of the
predicted protein. The uwd mutant harbors a
single nucleotide mutation from T to C in Exon 6 of Aim-1
(Fig. 1a), which leads to a mutation from a conserved serine
to proline in the tenth transmembrane domain (Fig. 1, b and
c). The dominant allele UwDbr
contains a nucleotide alteration from G to A in the second exon (Fig.
1a), which causes a missense point mutation of D153N
(conserved residue from medaka to human) in the fourth transmembrane
domain (Fig. 1, b and c). These studies thus
identify Aim-1 as the mutant gene in underwhite
mice.
MITF Regulates Endogenous AIM-1 mRNA Levels in Human Melanoma
Cells--
Through recognition of E-1 box DNA elements (CA(C/T)GTG)
MITF is thought to modulate expression of many major pigmentation genes
including tyrosinase, TYRP1, and DCT (6-8). Therefore experiments were
undertaken to investigate whether MITF regulates AIM-1 expression in
the melanocyte lineage. Endogenous MITF activity was manipulated in
human melanoma cells (SKMEL5) by infecting with a series of adenoviruses (see "Experimental Procedures") including null
adenovirus, adenoviruses over-expressing a control green fluorescence
protein fusion from the same promoter, wild-type MITF, or
dominant-negative MITF (Arg-218 deletion, which preserves
dimerization but ablates DNA binding by heterodimers) (6, 18). Western
analyses revealed that expression of adenovirus-encoded MITF proteins
is maximal at about 48 h after infection and lasts until at least
96 h (data not shown). Electrophoretic mobility shift assay
demonstrated that the DNA binding activities of the wild-type protein
and the dominant-negative effects of the mutant protein are strongest during this same period of time (data not shown). To examine the consequences of altering endogenous MITF on AIM-1 expression, RNA was
harvested from virus-infected cells 48 and 72 h after infection.
Real-time (quantitative) PCR was performed on the RNA samples, and
AIM-1 expression values were normalized to GAPDH quantitative PCR
signals. As shown in Fig. 2, wild-type
MITF stimulated AIM-1 expression significantly over baseline control
while dominant-negative MITF repressed its expression. Similar results
were also observed in human primary melanocytes (data not shown). These
effects were consistently seen at multiple time points examined. The
data suggest that MITF can modulate the expression of AIM-1 in human
melanoma cells.
An E-Box Repeat Is Present in the Putative Promoter Region of
the Human Aim-1 Gene--
Examination of the upstream region of the
human Aim-1 gene revealed a 1.2-kb repetitive sequence
containing 55 E boxes (CACGTG or CATGTG). Fig.
3a depicts representative
smaller repeat units seen in this region. It is unclear whether this
promoter structure (or specific sequence) is conserved in the mouse. A
CENSOR (20) search on this repeat against RepBase (21-23) showed no
homology to known human repetitive sequences. Also, a BLAST search
against the human genome revealed only a few shorter copies of this
repeat distributed in non-coding regions. Repeats can arise very
quickly during genome propagation, especially if they by chance contain short transcription, recombination, or replication signals. One common
mechanism for rapid generation of repeats within one or a few
generations is via short repeat expansion, replication, and/or recombination errors. It appears plausible, for example, that
the hexanucleotide repeat (CATGTG) might be derived from a dinucleotide
repeat (CA = TG).2
MITF Does Not Occupy AIM-1 5'-Flanking Sequences by ChIP--
To
examine occupancy by MITF and other E box binding factors such as
c-Myc, USF1, and USF2 on the AIM-1 5'-flanking region, chromatin
immunoprecipitation was carried out on human primary melanocytes, human
melanoma cells (SKMEL5), and IMR90 cells (human fibroblast). Primers
were designed that span the 5'- or 3'-region of the repeat (Fig.
3a). In primary melanocytes, but not fibroblasts (Fig.
3b), PCR products were amplified in samples
immunoprecipitated with an antibody directed against acetylated histone
H3, a component of transcriptionally active chromatin. In addition,
quantitative PCR were performed on total RNA from all three cell types.
AIM-1 transcripts were detected in primary human melanocytes, SKMEL5 melanoma cells but not IMR90 fibroblasts (Fig. 3c). These
results are consistent with melanocyte-restricted expression of AIM-1 (2). However, the various E-box-binding proteins tested, including MITF, do not measurably interact with this region despite the consensus
E-boxes. Positive control ChIPs for MITF are shown for a different
E-box-containing genomic fragment (Fig. 3a). Similar results were also obtained from SKMEL5 melanoma cells, except detection
of acetylated histone H3 did not extend as far in the 5'-region,
perhaps reflecting differences in transcriptional regulation of AIM-1
in this unpigmented melanoma line. These results suggest that MITF or
other E-box-recognizing proteins do not directly bind the E-box repeat
in the melanocyte lineage. Correspondingly, luciferase reporter assays
from this region ( The studies described here identify the Aim-1 gene as
the locus responsible for the mouse underwhite mutations.
Truncation of more than 40% of the protein in the recessive
uw mutant leads to complete loss of pigmentation and
exhibits the greatest pigment deficiency of the three alleles in
uw/uw mice. In contrast, the S435P mutation in
uwd allele produces a mild coat color dilution
in homozygotes. Thus, the uw mutation is a strong
loss-of-function mutant, which might behave as a functional null while
the uwd C-terminal mutation implies a partial
loss of function that does not measurably interfere with the product of
the remaining wild-type allele. In addition, uw
heterozygotes appear normally pigmented, suggesting that
haploinsufficiency does not occur for this gene, a finding consistent
with other pigment loci, such as albino (19), although
quantitative measurements of pigmentation might reveal subtle
differences that are not appreciated visually.
The dominant inheritance pattern of UwDbr
strongly suggests that Aim-1 functions in a molecular
complex with other species, possibly as a homo- or hetero-oligomer.
Aim-1 bears remote sequence homology to the sucrose
transporter family (1) whose oligomerization properties are not well
studied although dimer or tetramer formation has been reported for
other transporter families and genetic data even suggest interactions
between different transporters in yeast (24). Since the
UwDbr mutation occurs within a putative
transmembrane motif, it is likely that the altered charge of the
asparagine side chain (versus aspartate) disrupts a salt
bridge or other necessary secondary structure that contributes to
function in a manner that does not ablate intermolecular interactions.
However, despite its dominant genetic behavior, this mutation produces
a milder phenotype in homozygotes as compared with the frameshift
allele (uw), indicating that even in homozygous form the
mutant protein retains some wild-type function.
The putative transcriptional start described in this study is based on
published data using 5'-RACE (1). However, more definitive methods
(such as primer extension) will be needed to ascertain the
transcriptional start site in mammals. This is of particular importance
because the medaka AIM-1 mRNA contains an N-terminal region
that is not present in the currently defined human and mouse sequences.
Furthermore, no in-frame stop codon is present prior to the putative
initiation ATG for human or mouse, suggesting that the current sequence
may not contain the true 5'-untranslated region.
Identification of a large E-box containing insertion within the human
5'-flanking region did not correlate with binding by the bHLHzip
protein MITF, despite the fact that MITF could regulate endogenous
AIM-1 expression levels. Thus, MITF likely regulates AIM-1 expression
via an indirect mechanism (such as an intermediate transcription
factor) or via an enhancer element located at a distance from this
region. It is also possible that the reported transcriptional start
site is incorrect (as discussed above), in which case a different
promoter region may be subject to direct MITF binding and regulation.
Nonetheless, AIM-1's position downstream of MITF places it into the
company of multiple other genes of known importance in the pigmentation
response, several of which are important as melanoma antigens.
Finally, identification of AIM-1 as a rodent pigmentation gene suggests
the possibility that human mutations in the same factor might occur.
The uw allele displays age-dependent improvement in the eye pigmentation phenotype and complete absence of pigment in
the fur (25, 26). Interestingly, Minimal Pigment Oculocutaneous Albinism patients (affected gene unknown) display similar phenotypes: no skin or eye pigment at birth and development of detectable eye pigment during the first decade of life (27). In addition, while
this article was under review, M. Brilliant and colleagues published
the identification of two of the underwhite alleles described in this study and further reported the assignment of the
underwhite locus to human oculocutaneous albinism type 4 (OCA4) (28). Thus, underwhite mice appear to provide a model
for this or other types of oculocutaneous albinism in humans.
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INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
![]()
EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
![]()
RESULTS
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
Exon/Intron organization of human and mouse Aim-1 gene

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Fig. 1.
Aim-1 mutations in
underwhite mice. a, mutations at the DNA
level. uw contains a 7-base pair deletion in Exon 3 of
Aim-1. UwDbr has a G to A mutation in Exon 2 and
uwd has a T to C mutation in Exon 6. b, corresponding changes at the protein level. Putative
transmembrane domains (1) are highlighted with gray.
UwDbr has the D153N mutation in the fourth
transmembrane domain. uwd contains the S435P
mutation in the tenth transmembrane domain. uw has a
frameshift to stop between transmembrane domains 6 and 7. c,
diagram of the AIM-1 protein mutations in three underwhite
alleles.

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Fig. 2.
Quantitative PCR on endogenous AIM-1 mRNA
in human SKMEL5 melanoma cells infected with null adenovirus,
adenovirus over-expressing control green fluorescence protein fusion
protein (from the same promoter as the MITF viruses), wild-type MITF,
or dominant-negative MITF. Total RNA was isolated 48 and 72 h
after infection. Real-time PCR was carried out to quantitate AIM-1 and
GAPDH mRNA levels and AIM-1 levels were plotted after normalization
to GAPDH.

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[in a new window]
Fig. 3.
E-box repeats in the putative promoter of
human Aim-1 and chromatin immunoprecipitation.
a, diagram of the putative promoter of human
Aim-1. Representative repeat units in the human E
box-containing element are presented. b, chromatin
immunoprecipitation of the putative human AIM-1 promoter region.
Neither of two regions in the AIM-1 promoter (termed 5'- and
3'-fragments on promoter map) was bound by MITF or the other E
box-binding proteins USF1, USF2, and c-Myc. A positive control
chromatin immunoprecipitation from a separate genomic location is shown
for MITF and USF1. The experiment was repeated three times.
c, quantitative PCR on endogenous AIM-1 mRNA levels in
human primary melanocytes, SKMEL5 melanoma cells, and IMR90
fibroblasts. AIM-1 mRNA levels were plotted after normalization to
GAPDH.
1689 to +28 and
264 to +28) demonstrated
substantially increased basal activity in melanocytes versus
non-melanocytes, but no significant responsiveness to MITF
overexpression (data not shown). These data suggest that MITF does not
modulate AIM-1 transcription via direct interactions at the
proximal promoter, but rather likely utilizes a more remote binding
element, or operates through a different transcriptional intermediate.
It is also formally possible that the altered RNA levels of AIM-1 by
MITF could reflect changes in RNA stability, although such an activity
has not previously been described for MITF.
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DISCUSSION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
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ACKNOWLEDGEMENTS |
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We thank Dr. George Church for helpful discussion on repetitive sequences. We also thank Dr. Ruth Halaban for providing human primary melanocyte cultures. RepBase Update is thanked for access to their data base of human and rodent repetitive sequences.
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FOOTNOTES |
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* This work was funded by National Institutes of Health Grant AR43369 to (D. E. F.).The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Nirenberg Fellow in the Division of Pediatric Oncology at Dana
Farber Cancer Institute. To whom correspondence should be addressed. Tel.: 617-632-4916; Fax: 617-632-2085; E-mail:
david_fisher@dfci.harvard.edu.
Published, JBC Papers in Press, November 7, 2001, DOI 10.1074/jbc.M110229200
2 G. Church, personal communication.
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ABBREVIATIONS |
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The abbreviations used are: ChIPs, chromatin immunoprecipitation assay; RACE, rapid amplification of cDNA ends.
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