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J. Biol. Chem., Vol. 277, Issue 13, 11255-11264, March 29, 2002
From the Department of Biochemistry, Medical College of Wisconsin,
Milwaukee, Wisconsin 53226
Received for publication, October 11, 2001, and in revised form, December 31, 2001
Two distinct mannose 6-phosphate (Man-6-P)
receptors (MPRs), the cation-dependent MPR (CD-MPR) and the
insulin-like growth factor II/MPR (IGF-II/MPR), recognize a diverse
population of Man-6-P-containing ligands. The IGF-II/MPR is a type I
transmembrane glycoprotein with a large extracytoplasmic region
composed of 15 repeating domains that display sequence identity
to each other and to the single extracytoplasmic domain of the CD-MPR.
A structure-based sequence alignment of the two distinct
Man-6-P-binding sites of the IGF-II/MPR with the CD-MPR implicates
several residues of IGF-II/MPR domains 3 and 9 as essential for Man-6-P
binding. To test this hypothesis single amino acid substitutions were
made in constructs encoding either the N- or the C-terminal
Man-6-P-binding sites of the bovine IGF-II/MPR. The mutant IGF-II/MPRs
secreted from COS-1 cells were analyzed by pentamannosyl
phosphate-agarose affinity chromatography, identifying four residues
(Gln-392, Ser-431, Glu-460, and Tyr-465) in domain 3 and four residues
(Gln-1292, His-1329, Glu-1354, and Tyr-1360) in domain 9 as essential
for Man-6-P recognition. Binding affinity studies using the lysosomal enzyme, Lysosomes, membranous organelles containing numerous acid
hydrolases, play an essential role in the degradative metabolism of
mammalian tissues and cells. Targeting of newly synthesized acid
hydrolases to lysosomes is dependent upon specific recognition in the
trans-Golgi network of mannose 6-phosphate
(Man-6-P)1 residues found on
the N-linked oligosaccharides of lysosomal enzymes by the
two members of the P-type lectin family, the
cation-dependent Man-6-P receptor (CD-MPR) and the
insulin-like growth factor II/Man-6-P receptor (IGF-II/MPR).
Enzyme-bound receptors are subsequently transported to acidified,
prelysosomal compartments where the low pH (<6) environment induces
release of the enzymes from the receptors. Following enzyme release,
the MPRs recycle back to the Golgi to repeat this process or move to
the cell surface where the IGF-II/MPR, but not the CD-MPR, binds and
internalizes extracellular ligands (1-3).
In recent years the repertoire of identified extracellular ligands of
the IGF-II/MPR has expanded to include a diverse spectrum of
Man-6-P-containing target proteins. IGF-II/MPR binding to the mannose
6-phosphorylated latent form of transforming growth factor- The IGF-II/MPR is an ~300-kDa type I transmembrane glycoprotein that
consists of an N-terminal signal sequence, a large extracytoplasmic region composed of 15 homologous repeating domains, a single
transmembrane region, and a C-terminal cytoplasmic domain (Fig. 1)
(24). The ~46-kDa CD-MPR is a much smaller type I transmembrane
glycoprotein that in some species requires divalent cations for optimal
ligand binding (25-27). Significantly, each of the 15 IGF-II/MPR
extracytoplasmic domains displays amino acid sequence identity
(14-38%), similar size (~147 residues), and cysteine distribution
to each other and to the single, extracytoplasmic domain of the CD-MPR,
giving rise to the prediction that they exhibit similar disulfide
bonding and tertiary structures (24). The CD-MPR binds 1 mol of Man-6-P per polypeptide (27), whereas the IGF-II/MPR binds 2 mol of Man-6-P per
mol of receptor via two distinct carbohydrate-binding sites localized
to extracytoplasmic domains 1-3 and 7-9 (28-30). The IGF-II/MPR,
unlike the CD-MPR, also binds with high affinity to the nonglycosylated
peptide hormone, IGF-II, at a binding site localized to
extracytoplasmic domain 11 (Fig. 1) (31, 32).
In contrast to the CD-MPR, little is known about the amino acid
residues involved in carbohydrate recognition by the IGF-II/MPR. Previous biochemical studies (30, 33) have identified only a single
arginine residue in each of the two IGF-II/MPR Man-6-P-binding sites,
Arg-435 in domain 3 and Arg-1334 in domain 9, to be important for
Man-6-P binding by the IGF-II/MPR. However, the recently determined three-dimensional structure of the extracytoplasmic region of the
bovine CD-MPR complexed with Man-6-P (34) or pentamannosyl phosphate
(35) not only reveals the nature of carbohydrate recognition by the
CD-MPR, but it also provides the framework from which to decipher the
molecular basis of Man-6-P recognition by the IGF-II/MPR as described
in this report. Consequently, site-directed mutagenesis was used to
generate single amino acid substitutions in soluble, truncated forms of
the IGFII/MPR in order to test the hypothesis that residues of
IGF-II/MPR extracytoplasmic domains 3 and 9 predicted by a
structure-based sequence alignment with the CD-MPR to be in the N- and
C-terminal Man-6-P-binding pockets of the IGF-II/MPR, respectively, are
essential for high affinity Man-6-P binding. By using pentamannosyl
phosphate-agarose affinity chromatography, four amino acid residues
(Gln-392, Ser-431, Glu-460, and Tyr-465) in domain 3 and four residues
(Gln-1292, His-1329, Glu-1354, and Tyr-1360) in domain 9 were
identified as essential for carbohydrate recognition by the IGF-II/MPR
in addition to the previously determined Arg-435 (domain 3) and
Arg-1334 (domain 9) residues. To assess quantitatively the relative
contribution of each of the residues essential to the Man-6-P binding
ability of the IGF-II/MPR, binding affinity studies of the mutant
constructs for the lysosomal enzyme, Materials--
The following reagents were obtained commercially
as indicated: restriction endonucleases, T4 polynucleotide kinase, T7
DNA polymerase, uracil glycosylase inhibitor, M13K07 helper phage, CJ236, JM109, and NM522 Escherichia coli strains were from
New England Biolabs; T4 DNA ligase, BenchMark prestained protein
ladder, and trypsin-EDTA were from Invitrogen; Wizard Plus SV plasmid DNA minipreps were from Promega; GeneMate plasmid DNA minipreps were
from ISC Bioexpress; acrylamide was from Schwarz/Mann; SDS was from BDH
Biochemical; ammonium persulfate and TEMED were from Bio-Rad; glucose
6-phosphate, Man-6-P, Generation of Wild-type and Mutant IGF-II/MPR N- and C-terminal
Man-6-P-binding Site cDNAs--
The wild-type constructs encoding
the bovine IGF-II/MPR signal sequence and extracytoplasmic domains
7-11 (Dom7-11) or domains 1-3 (Dom1-3His) and domains 7-9
(Dom7-9His) followed by a C-terminal tag of 6 histidine residues (Fig.
1) were generated as described previously (33). Each of these
constructs was cloned into the pBluescript SK vector (Stratagene) to
prepare single-stranded DNA templates for site-directed mutagenesis or
into the pcDNA3 vector (Invitrogen) for expression in mammalian
cells. Single amino acid substitutions of residues predicted to form
the N- or C-terminal IGF-II/MPR Man-6-P-binding sites were generated according to the method of Kunkel et al. (36). The mutagenic oligonucleotides (Operon) used are as follows (each substitution is
indicated by the underlined codon): Y368F (5'-AC GAG
TTT ACA TAT TAT TTG-3'); Q392E (5'-GTG TGC GAA
GTG AAA AAG GC-3'); Q392N (5'-A GTG TGC AAC GTG AAA AAG
G-3'); S430A (5'-AA GAG TGC GCC TCC GGC TTC-3'); S431A
(5'-AG TGC AGC GCC GGC TTC CAG-3'); T458A (5'-CT GTG TTC
GCC GGG GAG GTG-3'); T458S (5'-CT GTG TTC TCC
GGG GAG GTG-3'); E460D (5'-TC ACC GGG GAC GTG GAC TGC-3');
E460Q (5'-TC ACC GGG CAG GTG GAC TGC-3'); Y465F (5'-AC TGC
ACC TTC TTC TTC ACG-3'); Y1264F (5'-CC GGC GAA
TTT ACC TAT TAC-3'); Q1292E (5'-CA TCA TGC GAG
GAA AAG CGG-3'); Q1292N (5'-CA TCA TGC AAC GAA AAG CGG-3');
H1329N (5'-AC ACC TGC AAC AAG GTG TAC-3'); H1329S (5'-AC ACC TGC TCC AAG GTG TAC-3'); L1352A (5'-CC GTG TTT
GCC CAG GAG ACG-3'); L1352V (5'-CC GTG TTT GTC
CAG GAG ACG-3'); E1354D (5'-CTC CAG GAC ACG TCC GAT TG-3');
E1354Q (5'-TT CTC CAG CAG ACG TCC GAT-3'); and Y1360F
(5'-AT TGC TCC TTC CTG TTT GAG-3'). A polymerase chain reaction-based strategy was used to generate the Dom7-11His construct by the addition of 6 histidine residues (CAC) and a stop
codon (TGA) following the C-terminal residue, Glu-1656, of the
wild-type Dom7-11 cDNA construct. The oligonucleotide primer used
was the reverse complement of the following:
5'-TGGCACACACCCCTGGCCTGCGAGCACCACCACCACCACCACTGAATTCTAGACCGG-3'. Each of the predicted sequences was confirmed by DNA sequence analysis using an Amersham Biosciences ALF DNA sequencer.
Pentamannosyl Phosphate-Agarose Affinity
Chromatography--
COS-1 cells (American Type Culture Collection)
were cultured as described previously (37) and transiently transfected
using the DEAE-dextran (Amersham Biosciences) technique (30) with pcDNA3 vectors containing wild-type or mutant Dom1-3His,
Dom7-9His, or Dom7-11 cDNAs. At 48 h post-transfection, the
cells were metabolically labeled with
[35S]methionine/[35S]cysteine for an
additional 24 h. The medium was harvested and dialyzed, and the
COS-1 cells were solubilized as detailed previously (37). To assay the
constructs for ligand binding ability, dialyzed medium containing the
secreted wild-type or mutant receptors was subjected to pentamannosyl
phosphate-agarose affinity chromatography as described previously (37).
Subsequently, the affinity chromatography samples were
immunoprecipitated with rabbit polyclonal antisera specific for the
bovine IGF-II/MPR plus protein A-Sepharose (Sigma) at 4 °C for
16-24 h as described (37). To determine the percentage of each
construct that was secreted into the medium, equal aliquots of cell
lysates and dialyzed media were subjected to immunoprecipitation as
described above. The immunoprecipitated samples were subjected to
SDS-PAGE, and the radioactivity was quantified using a PhosphorImager (Molecular Dynamics Storm 860) and ImageQuant (version 4.1) software.
Preparation of IGF-II/MPR Man-6-P-binding Site
Constructs for Binding Affinity Analyses--
To prepare Dom1-3His
and Dom7-9His receptors for binding affinity studies, COS-1 cells were
transiently transfected using the DEAE-dextran technique (30) with
pcDNA3 vectors containing the wild-type or mutant Dom1-3His or
Dom7-9His cDNAs. Forty eight hours after transfection the cells
were rinsed briefly with phosphate-buffered saline (pH 7.3) and
incubated for 24 h in Waymouth's MB 752/1 serum-free medium
(Invitrogen). The medium was harvested and dialyzed against buffer
containing 20 mM Tris (pH 8.0), 0.5 M NaCl, and 8 mM imidazole (binding buffer). Batch binding of the
His6-tagged receptors was performed by adding glycerol
(10% final concentration), Nonidet P-40 (0.1% final concentration),
and nickel-nitrilotriacetic acid (Ni-NTA, Qiagen) agarose (~200 µl
resin/50 ml of medium) to the dialyzed medium and incubating at 4 °C
for 16-24 h. The Ni-NTA-agarose was transferred to a column and washed
extensively with binding buffer and then eluted with binding buffer
containing 250 mM imidazole (pH 8.0). Aliquots of each
Ni-NTA eluate were subjected to the Bio-Rad (Bradford) protein assay
using bovine serum albumin standards to determine the approximate
amount of each Dom1-3His or Dom7-9His protein obtained. An average
yield of 11 µg of protein was purified from the medium of each
transfected 150-cm2 cell culture flask. The relative
amounts of Dom1-3His or Dom7-9His proteins obtained was confirmed by
performing Western blot analysis as detailed previously (33) using
bovine IGF-II/MPR-specific antiserum and protein A/horseradish
peroxidase conjugate (Amersham Biosciences) or ImmunoPure goat
anti-rabbit IgG/horseradish peroxidase conjugate (Pierce) followed by
detection using SuperSignal West Pico chemiluminescent substrate (Pierce).
Binding Affinity Analysis--
125I-Labeled (1-2
µCi/µg) human Site-directed Mutagenesis of the N- and C-terminal Man-6-P-binding
Sites of the IGF-II/MPR--
A structure-based
sequence alignment of the extracytoplasmic region of the CD-MPR with
domains 3 and 9 of the IGF-II/MPR and molecular modeling identified
several residues in domain 3 (Tyr-368, Gln-392, Ser-430, Ser-431,
Arg-435, Thr-458, Glu-460, and Tyr-465) and domain 9 (Tyr-1264,
Gln-1292, His-1329, Arg-1334, Leu-1352, Glu-1354, and Tyr-1360) that
are located at positions equivalent to CD-MPR residues that serve as
potential hydrogen bond donors/acceptors with Man-6-P (Fig.
2A) (34). We predicted that these residues are important for
Man-6-P recognition by the IGF-II/MPR. To test this hypothesis,
site-directed mutagenesis was used to generate single amino acid
substitutions in cDNA constructs encoding either the N-
(Dom1-3His) or the C-terminal (Dom7-9His or Dom7-11) Man-6-P-binding site of the IGF-II/MPR (Figs. 1 and
2B). The wild-type Dom1-3His, Dom7-9His, and Dom7-11 constructs were demonstrated previously (33)
to bind the lysosomal enzyme, Expression of the N- and C-terminal Man-6-P-binding Sites of the
IGF-II/MPR--
The use of truncated IGF-II/MPR
constructs allows us to study separately the two IGF-II/MPR
Man-6-P-binding sites. In addition, since Dom1-3His, Dom7-9His, and
Dom7-11 receptors lack the transmembrane region of the IGF-II/MPR,
these soluble recombinant proteins are secreted into the medium,
facilitating their efficient separation from endogenous MPRs when
expressed in mammalian cells. Furthermore, previous studies in our
laboratory (30) indicate that secreted MPRs are folded into a
conformation conducive to ligand binding, whereas misfolded MPRs are
retained in the cells. Thus, the efficiency of secretion of each
IGF-II/MPR construct provides an indirect assessment of correct
folding. Consequently, the wild-type and mutant Dom1-3His, Dom7-9His,
and Dom7-11 constructs were expressed in transiently transfected COS-1
cells, and the efficiency of secretion of each construct was assayed
(data not shown). With the exception of the Q1292N Dom7-9His mutant
(no detectable secretion) and the Q1292N (secretion efficiency ~29%)
and L1352A (secretion efficiency ~14%) Dom7-11 mutants, all of the
IGF-II/MPR mutants were efficiently secreted (i.e. >50% of
the total receptor secreted at steady state).
Identification of IGF-II/MPR Residues Essential for
Man-6-P Recognition by Pentamannosyl Phosphate-Agarose Affinity
Chromatography--
To identify residues important for carbohydrate
recognition by the IGF-II/MPR COS-1 cells were transfected with
wild-type or mutant Dom1-3His or Dom7-11 constructs. Subsequently,
the cells were metabolically labeled with
[35S]methionine/[35S]cysteine, and the
medium containing the secreted receptors was harvested and subjected to
pentamannosyl phosphate-agarose affinity chromatography. Wild-type
Dom1-3His (~70% Man-6-P binding) and wild-type Dom7-11 (~66%
Man-6-P binding) exhibited similar specific binding to pentamannosyl
phosphate-agarose affinity columns (Fig. 3). In contrast, specific binding to the
affinity columns was eliminated when single amino acid substitutions
were made of Gln-392, Ser-431, Glu-460, or Tyr-465 in domain 3 or of
Gln-1292, His-1329, Glu-1354, or Tyr-1360 in domain 9. Although
substitution of Leu-1352 with alanine also eliminated the Man-6-P
binding ability of Doms7-11, this mutant construct was poorly secreted
(secretion efficiency ~14%) from COS-1 cells, suggesting that this
mutation disrupts folding instead of having a specific effect on
binding. This prediction is supported by the results obtained with the
L1352V mutant, which is efficiently secreted (secretion efficiency
~57%) and retains Man-6-P binding ability. Binding to pentamannosyl
phosphate affinity columns was also retained when Thr-458 in domain 3 was replaced, whereas substitutions of Tyr-368 or Ser-430 in domain 3 or Tyr-1264 in domain 9 resulted in only a partial inhibitory effect on
Man-6-P binding. In summary, these studies identified four residues
(Gln-392, Ser-431, Glu-460, and Tyr-465) in domain 3 and four residues
(Gln-1292, His-1329, Glu-1354, and Tyr-1360) in domain 9 as essential
for Man-6-P recognition by the IGF-II/MPR (Fig. 3) in addition to the
previously identified Arg-435 (domain 3) and Arg-1334 (domain 9)
residues (30, 33).
Preparation of Purified IGF-II/MPR Man-6-P-binding
Site Constructs for Binding Affinity Analyses--
In preparation for
binding affinity studies, nickel-nitrilotriacetic acid (Ni-NTA)-agarose
affinity chromatography was used to purify wild-type and selected
Dom1-3His mutants that exhibited a partial inhibitory effect (Y368F)
or a complete elimination (Q392N, S431A, E460D, and Y465F) of Man-6-P
binding ability. Unlike the Dom1-3His construct, the Dom7-11
construct used to identify essential Man-6-P-binding site residues in
domain 9 of the IGF-II/MPR does not contain a His6 tag.
Consequently, a Dom7-11His construct was generated by adding a tag of
six histidine residues to the C terminus of the wild-type Dom7-11
construct. Surprisingly, the Dom7-11His construct was retained within
transiently transfected COS-1
cells2 in contrast to the
wild-type Dom7-11 construct, which was efficiently secreted (~89%)
into the medium (data not shown). In addition, Dom7-11His from
solubilized COS-1 cells did not bind to Ni-NTA-agarose affinity columns
although denatured Dom7-11His could be detected by Western blotting
using an anti-His antibody (Tetra-His antibody, Qiagen).2
Dom7-11His from solubilized COS-1 cells also did not bind to pentamannosyl phosphate-agarose affinity columns.2 Together
these results suggest that the presence of a His6 tag at
the C terminus of the Doms7-11 construct disrupts its structural integrity. Therefore, selected single amino acid substitutions that
partially inhibited (Y1264F) or eliminated (Q1292N, H1329N, E1354D, and
Y1360F) the Man-6-P binding ability of the Dom7-11 construct were
generated in the previously characterized Dom7-9His construct (33). To
confirm the effect of the selected amino acid substitutions on the
Man-6-P binding ability of the Dom7-9His construct, transiently
transfected COS-1 cells were metabolically labeled with
[35S]methionine/[35S]cysteine, and the
medium containing the secreted receptors was harvested and subjected to
pentamannosyl phosphate-agarose affinity chromatography. Consistent
with the results obtained with the Dom7-11 construct, the Y1264F
mutation had a partial inhibitory effect, whereas the H1329N, E1354D,
and Y1360F single amino acid substitutions abolished the Man-6-P
binding ability of the Dom7-9His construct (Fig. 3). Interestingly,
wild-type Dom7-9His (~40% Man-6-P binding) and the Y1264F
Dom7-9His mutant (~25% Man-6-P binding) each exhibited
significantly lower specific binding to pentamannosyl phosphate-agarose
affinity columns as compared with wild-type Dom7-11 (~66% Man-6-P
binding) and the Y1264F Dom7-11 mutant (~44% Man-6-P binding),
respectively. These results suggest that the presence of a
His6 tag at the C terminus of the Dom7-9His construct and/or the absence of domains 10 and 11 negatively influence the Dom7-9His construct such that less than half of the total Dom7-9His receptor population is capable of specific binding to pentamannosyl phosphate-agarose affinity columns under the conditions employed in
these experiments. Nevertheless, previous studies (33) that analyzed
the inhibition of Binding Affinities of the Wild-type and Mutant Dom1-3His and
Dom7-9His Constructs--
To assess quantitatively the relative
importance and contribution of each of the essential residues of domain
3 and domain 9 to the Man-6-P binding ability of the IGF-II/MPR,
binding affinity studies were performed using the well characterized
lysosomal enzyme, The two members of the P-type lectin family, the CD-MPR and the
IGF-II/MPR, recognize with high affinity and specificity an expanding
list of Man-6-P-containing ligands involved in a number of
physiologically essential pathways. The binding specificity of the MPRs
for Man-6-P is evidenced by the ~10,000-fold lower affinity each has
for mannose and for the closely related structural analog, glucose
6-phosphate, which contains an equatorial 2-hydroxyl instead of the
axial 2-hydroxyl found in Man-6-P (27, 28). These results indicate that
the presence of the axial 2-hydroxyl and the phosphate moiety of
Man-6-P are essential for Man-6-P recognition by the MPRs. Furthermore,
based on these data it was calculated that each of these two Man-6-P
substituents contributes ~4-5 kcal/mol of Gibbs free energy, an
amount consistent with a single strong hydrogen bond or a few weak
hydrogen bonds (27). However, until recently, little was known about
the residues involved in Man-6-P binding by either the CD-MPR or the
IGF-II/MPR. The recently obtained crystal structures of the bovine
CD-MPR complexed with Man-6-P (34) or pentamannosyl phosphate (35)
identified the residues that form its Man-6-P-binding pocket. All nine
amino acids (Tyr-45, Gln-66, Asp-103, Asn-104, His-105, Arg-111,
Glu-133, Arg-135, and Tyr-143) that form the carbohydrate-binding
pocket of the bovine CD-MPR (34, 35) are also in the human, mouse, and
rat CD-MPR sequences (Fig. 5). Previous
biochemical studies identified only a single arginine residue in each
of the two IGF-II/MPR Man-6-P-binding sites, Arg-435 in domain 3 and
Arg-1334 in domain 9, to be important for Man-6-P binding (30). In this
report, site-directed mutagenesis was used to test the hypothesis that residues of domain 3 (Tyr-368, Gln-392, Ser-430, Ser-431, Arg-435, Thr-458, Glu-460, and Tyr-465) and domain 9 (Tyr-1264, Gln-1292, His-1329, Arg-1334, Leu-1352, Glu-1354, and Tyr-1360) predicted by a
structure-sequence alignment with the CD-MPR form the N- and C-terminal
Man-6-P-binding pockets of the IGF-II/MPR, respectively.
In the CD-MPR, Tyr-45 is in proximity to interact with the 1-hydroxyl
of the terminal Man-6-P, which is involved in an
O-glycosidic linkage, and the 4-hydroxyl of the penultimate
mannose residue (35). Previous site-directed mutagenesis studies of the
CD-MPR (37) demonstrated that replacement of Tyr-45 with phenylalanine decreased binding to pentamannosyl phosphate columns by ~33%, indicating that this residue is not essential for carbohydrate recognition. In this report, replacement of Tyr-368 in domain 3 or
Tyr-1264 in domain 9 with phenylalanine resulted in a similar partial
inhibition of binding (~33-38% decrease) to pentamannosyl phosphate-agarose affinity columns as compared with the wild-type IGF-II/MPR constructs (Fig. 3). These results suggest that like Tyr-45
in the CD-MPR, Tyr-368 and Tyr-1264 may play a similar nonessential
role in ligand recognition by the N- and C-terminal Man-6-P-binding
sites of the IGF-II/MPR (Fig. 6).
Recent site-directed mutagenesis studies have confirmed that four of the CD-MPR-binding site residues (Gln-66, Arg-111, Glu-133, and Tyr-143), which together form all but one of the contacts between the CD-MPR and the 2-, 3-, and 4-hydroxyls of the mannose ring of Man-6-P, are essential for Man-6-P binding (Fig. 6) (37). Comparison of the amino acid sequence of the CD-MPR to domain 3 and domain 9 of the IGF-II/MPR indicated that three (Gln-66, Arg-111, and Tyr-143) of the four residues are at identical positions in the two Man-6-P-binding sites of the IGF-II/MPR (Fig. 2). Arg-435 in domain 3 and Arg-1334 in domain 9, which correspond to Arg-111 in the CD-MPR, were confirmed previously to be critical for Man-6-P binding in the IGF-II/MPR (30, 33). In this study, single amino acid substitutions of the IGF-II/MPR domain 3 (Gln-392 and Tyr-465) or domain 9 (Gln-1292 and Tyr-1360) residues that align with Gln-66 and Tyr-143 of the CD-MPR, also eliminated Man-6-P binding ability (Fig. 3), confirming the prediction that these residues are essential to carbohydrate recognition by the IGF-II/MPR. The CD-MPR structure-based sequence alignment (Fig. 2) also predicted the presence of a threonine (Thr-458) in domain 3 and a leucine (Leu-1352) in domain 9 of the IGF-II/MPR at the sequence position corresponding to the essential CD-MPR-binding pocket residue, Glu-133. However, with the exception of the L1352A mutation that appeared to disrupt folding rather than have a specific effect on binding, replacement of Thr-458 or Leu-1352 had little or no significant effect on Man-6-P binding by the IGF-II/MPR (Fig. 3). On the other hand, substitutions made of the glutamate residues, Glu-460 in domain 3 or Glu-1354 in domain 9, predicted to align with Arg-135 of the CD-MPR abolished binding to pentamannosyl phosphate columns (Fig. 3). Previous studies (37) demonstrated that Man-6-P binding was retained when amino acid substitutions were made of Arg-135, which interacts with the 4-hydroxyl of Man-6-P in the CD-MPR-binding pocket (Fig. 6). Together these disparate results have led us to propose a refined CD-MPR structure-based amino acid sequence alignment in which Glu-460 (domain 3) and Glu-1354 (domain 9) align with Glu-133 of the CD-MPR, whereas Arg-135 does not align with any domain 3 or domain 9 residues (Fig. 5). Most importantly, the refined alignment predicts that the two Man-6-P-binding sites of the IGF-II/MPR contain identical, essential residues (Gln-392, Arg-435, Glu-460, and Tyr-465 in domain 3; Gln-1292, Arg-1334, Glu-1354, and Tyr-1360 in domain 9) that in the three-dimensional structure of the CD-MPR (Gln-66, Arg-111, Glu-133, and Tyr-143) form the base of the Man-6-P-binding pocket and provide critical contacts to the 2-, 3-, and 4-hydroxyl groups of mannose (Figs. 5 and 6) (34, 35). In the three-dimensional structure of the CD-MPR, the phosphate moiety of Man-6-P is almost completely buried within the binding pocket by a loop containing three residues (Asp-103, Asn-104, and His-105), which are missing in IGF-II/MPR domains 3 and 9, that provide main chain and side chain interactions to the phosphate (Figs. 2 and 6) (34, 35). Previous mutagenesis studies demonstrated that substitution of His-105, which provides a side chain contact with the phosphate moiety of Man-6-P, had only a partial inhibitory effect on the Man-6-P binding ability of the CD-MPR (37). Consequently, the majority of the binding energy associated with the phosphate moiety of Man-6-P likely results from a combination of side chain and main chain contacts made by the CD-MPR with the phosphate group (34, 35). To identify potential residues responsible for binding the phosphate moiety of Man-6-P in the N- and C-terminal IGF-II/MPR-binding pockets, we generated single amino acid substitutions of Ser-430 and Ser-431 in domain 3 and His-1329 in domain 9 (Fig. 2). Whereas substitution of Ser-430 in domain 3 resulted in only a partial inhibitory effect on ligand binding, replacement of Ser-431 in domain 3 or His-1329 in domain 9 eliminated Man-6-P recognition (Fig. 3), indicating that Ser-431 and His-1329 play an important role in carbohydrate recognition by the IGF-II/MPR. It is likely that adjacent residues in domain 3 and domain 9 also provide important main chain and/or side chain contacts to the phosphate moiety of Man-6-P as observed in the CD-MPR (Fig. 6) (34, 35). In addition, residue differences, such as the presence of small residues (Ser-430, Ser-431, and Gly-432) in domain 3 as compared with bulky residues (His-1329, Lys-1330, and Val(Ile)-1331) in domain 9 (Figs. 2 and 5), may account for the ability of the IGF-II/MPR N-terminal Man-6-P-binding site, but not the C-terminal site, to recognize the Man-6-P methyl ester and mannose 6-sulfate modifications found on the lysosomal enzymes from Dictyostelium discoideum in addition to the phosphomonoester, Man-6-P (33). Binding affinity analyses using the lysosomal enzyme,
The three-dimensional structure of the bovine CD-MPR bound to pentamannosyl phosphate shows that the binding site of the receptor encompasses the phosphate group and the terminal three mannose rings (35). Significantly, the vast majority (15 of the 21 potential hydrogen bond interactions) of the binding site contacts are made to the terminal Man-6-P moiety (35), consistent with inhibition studies that demonstrated that the presence of Man-6-P at a terminal position represents the major determinant of receptor binding (42, 43). Three binding site amino acids (Asp-43, Tyr-45, and Gln-68) are responsible for providing the six remaining contacts, four of which are made to the penultimate mannose ring and two of which are made to the prepenultimate mannose ring of pentamannosyl phosphate (35). In the CD-MPR, Asp-43 interacts with the 3- and 4-hydroxyls of the penultimate mannose ring (35). Interestingly, in our refined sequence alignment (Fig. 5) both of the IGF-II/MPR-binding sites have a glutamate residue at this position that might perform a similar carbohydrate recognition function. As discussed previously, both of the IGF-II/MPR-binding sites contain a tyrosine residue at the sequence position corresponding to Tyr-45 (Fig. 5), which interacts with the 1-hydroxyl of the terminal Man-6-P, which is involved in an O-glycosidic linkage, and the 4-hydroxyl of the penultimate mannose ring in the CD-MPR. However, none of these tyrosine residues is essential for carbohydrate recognition by their respective binding sites since replacement of each tyrosine with phenylalanine results in only a partial inhibitory effect on Man-6-P binding (Figs. 3 and 4) (37). Gln-68 was shown to provide contacts to the penultimate and prepenultimate mannose rings of pentamannosyl phosphate (35). However, it is unclear whether these interactions are maintained in the wild-type CD-MPR since the structure of the CD-MPR bound to pentamannosyl phosphate was obtained using a glycosylation-deficient form of the receptor in which Gln-68 replaced the asparagine residue found in the wild-type receptor (35). Furthermore, a dramatic difference is observed at that position in the two Man-6-P-binding sites of all of the IGF-II/MPRs sequenced to date; with the exception of the N-terminal binding site of the colugo, all have a lysine residue at the sequence position corresponding to Asn-68 in the wild-type CD-MPR (Fig. 5). Consequently, further studies will be needed to identify which, if any, IGF-II/MPR residues are involved in binding to sugars of the bound oligosaccharide other than the terminal Man-6-P moiety. The identification of amino acids essential for Man-6-P
recognition in domains 3 and 9 of the IGF-II/MPR is consistent with the
observation that the best sequence alignment occurs between the CD-MPR
and domains 3, 5, and 9 of the IGF-II/MPR (24). However, the N- and
C-terminal Man-6-P-binding sites of the IGF-II/MPR have each been
localized to a minimum of three domains, 1-3 and 7-9, respectively
(Fig. 1) (29, 30). Furthermore, various attempts to express a
functional domain 3 or domain 9 alone have been
unsuccessful,3 leading to the
prediction that residues in adjacent domains are important either
directly for carbohydrate recognition or, more likely, indirectly for
proper folding of the receptor to enable Man-6-P binding to occur (30).
Importantly, each of the four residues identified as essential for
carbohydrate recognition by the bovine CD-MPR (Gln-66, Arg-111,
Glu-133, and Tyr-143) is found in domains 3 and 9 of all of the
IGF-II/MPRs sequenced to date (Fig. 5). It is interesting to note that
these four essential Man-6-P-binding site residues are also found in
the sequence of domain 5 (24), although it is clear that domain 5 does
not harbor a high affinity Man-6-P-binding site in contrast to domains
3 and 9 (29, 30, 38). One likely explanation for the inability of
domain 5 to bind Man-6-P with high affinity is the absence of two
cysteine residues, corresponding to Cys-106 and Cys-141 in the CD-MPR
sequence, necessary to form a critical disulfide bond that in the
CD-MPR brings two loops (loop between Several lines of evidence support the hypothesis that the IGF-II/MPR
acts as a growth inhibitor and that loss of IGF-II/MPR function is
associated with progression of tumorigenesis (44, 45). In particular,
the ability of the IGF-II/MPR to regulate targeting of lysosomal
enzymes to the lysosome (1-3), facilitate activation of the growth
inhibitor transforming growth factor- In summary, we report the identification of four amino acid residues
(Gln-392, Ser-431, Glu-460, and Tyr-465) in domain 3 and four residues
(Gln-1292, His-1329, Glu-1354, and Tyr-1360) in domain 9 that are
essential for carbohydrate recognition by the IGF-II/MPR in addition to
the previously determined Arg-435 (domain 3) and Arg-1334 (domain 9)
residues (30). The results from these studies provide strong evidence
that the two IGF-II/MPR Man-6-P-binding sites utilize a mechanism
similar to that of the CD-MPR for high affinity Man-6-P binding and
that the N- and C-terminal carbohydrate recognition domains of the
IGF-II/MPR are structurally similar to each other and to the CD-MPR
(Fig. 6). Future structural studies will be needed to verify the
predictions made from these studies as well as to identify other
residues and structural features necessary for high affinity
carbohydrate recognition by the IGF-II/MPR.
* This work was supported in part by Grant DK42667 from the National Institutes of Health.The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
§ Recipient of an Established Investigatorship from the American Heart Association. To whom correspondence should be addressed. Tel.: 414-456-4698; Fax: 414-456-6510; E-mail: ndahms@mcw.edu.
Published, JBC Papers in Press, January 17, 2002, DOI 10.1074/jbc.M109855200
2 B. Janowiak, M. Hancock, and N. Dahms, unpublished data.
3 N. Dahms, unpublished data.
The abbreviations used are: Man-6-P, mannose 6-phosphate; MPR, mannose 6-phosphate receptor; IGF-II, insulin-like growth factor II; CD-MPR, cation-dependent mannose 6-phosphate receptor; IGF-II/MPR, insulin-like growth factor II/mannose 6-phosphate receptor; Ni-NTA, nickel-nitrilotriacetic acid; TEMED, N,N,N,N'-tetramethylethylenediamine.
Copyright © 2002 by The American Society for Biochemistry and Molecular Biology, Inc. This article has been cited by other articles:
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