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J. Biol. Chem., Vol. 277, Issue 14, 11684-11690, April 5, 2002
From the
Received for publication, November 19, 2001
2-Phenoxyethanol is converted into phenol and
acetate by a strictly anaerobic Gram-positive bacterium,
Acetobacterium strain LuPhet1. Acetate results from
oxidation of acetaldehyde that is the early product of the
biodegradation process (Frings, J., and Schink, B. (1994) Arch.
Microbiol. 162, 199-204). Feeding experiments with resting cell
suspensions and 2-phenoxyethanol bearing two deuterium atoms at either
carbon of the glycolic moiety as substrate demonstrated that the
carbonyl group of the acetate derives from the alcoholic function and
the methyl group derives from the adjacent carbon. A concomitant
migration of a deuterium atom from C-1 to C-2 was observed. These
findings were confirmed by NMR analysis of the acetate obtained by
fermentation of
2-phenoxy-[2-13C,1-2H2]ethanol,
2-phenoxy-[1-13C,1-2H2]ethanol,
and
2-phenoxy-[1,2-13C2,1-2H2]ethanol.
During the course of the biotransformation process, the molecular
integrity of the glycolic unit was completely retained, no loss of the
migrating deuterium occurred by exchange with the medium, and the
1,2-deuterium shift was intramolecular. A diol dehydratase-like
mechanism could explain the enzymatic cleavage of the ether bond of
2-phenoxyethanol, provided that an intramolecular H/OC6H5 exchange is assumed, giving rise to the
hemiacetal precursor of acetaldehyde. However, an alternative mechanism
is proposed that is supported by the well recognized propensity of
Ether linkages are comparably stable, and their cleavage requires
rather rigorous conditions. Such cleavage reactions represent challenges also to microbes and their enzymes, and this difficulty causes the relative stability of many ether compounds in nature (1).
An important group of xenobiotic ether compounds, the linear polyether
PEG1 and its derivatives, is
released into the environment at high quantities, as lubricants,
solubility mediators, hydrophilic moiety of nonionic surfactants and
household detergents, or as a constituent of cosmetics and
pharmaceutical preparations (2). PEGs were found to be degraded by
various bacteria, both in the presence and the absence of molecular
oxygen (aerobically, Refs. 2-6; anaerobically, Refs. 7-12). Different
reaction mechanisms are involved in PEG degradation, and it is
generally accepted that they all involve the formation of a labile
intermediary hemiacetal structure (1). In the presence of oxygen, such
a hemiacetal can be formed through a monooxygenase-catalyzed
hydroxylation of one of the methylene carbon atoms. In the absence of
molecular oxygen, generation of such a hemiacetal can be achieved only
with substrates containing a free hydroxyl group adjacent to the ether carbon through a hydroxyl shift reaction. Such hydroxyl shift reactions
are catalyzed by diol dehydratase (EC 4.2.1.28) and glycerol
dehydratase (EC 4.2.1.30) enzymes, with the substrates EG,
1,2-propanediol, or glycerol. The reaction mechanisms of these enzymes
have been studied in great detail (13-15). They typically depend on
adenosylcobalamin as cofactor, which provides a reversible radical
source. Based on these well studied model systems, it was assumed that
anaerobic PEG degradation to acetaldehyde as the first identifiable
intermediate may be adenosylcobalamin-dependent as well and
may proceed in a way analogous to diol dehydratase, provided that at
least one terminal hydroxyl group is free for the required shift
reaction (7, 10, 11, 16, 17).
The anaerobic homoacetogenic bacterium Acetobacterium strain
LuPhet 1 can grow with low molecular weight PEGs as the sole source of
carbon and energy but can also use EG or 2-phenoxyethanol as the sole
substrate; the latter is fermented to phenol plus acetate (12) as
schematized in Fig. 1. In cell-free
extracts of this strain, two separate enzyme activities were detected, the one reacting with EG and the other one reacting with
phenoxyethanol. Both reactions yield acetaldehyde as the first
product. The authors found that the EG-degrading activity was
stimulated 3.5-fold by added adenosylcobalamin and was strongly
inhibited by cyano- or hydroxocobalamin or by light; the latter effect
could be alleviated by adenosylcobalamin addition (12). With this, the
EG-degrading enzyme behaved identically to the known diol
dehydratases (18). Cleavage of 2-phenoxyethanol, on the other hand, was
influenced neither by various corrinoids, including adenosylcobalamin,
nor by light (12), indicating that the two enzymes are definitively different proteins and perhaps operate by different reaction
mechanisms.
Since 2-phenoxyethanol is a monosubstituted ethylene glycol, it allows
us to study the assumed shift reaction in greater detail because
theoretically, either the free hydroxyl group or the phenoxy residue
can be shifted to form a hemiacetal as an intermediate. We therefore
tried to distinguish between those two possible pathways by application
of specifically deuterated and/or 13C-labeled
2-phenoxyethanol preparations to resting cell suspensions of
Acetobacterium strain LuPhet 1 and subsequent analysis of
the produced acetate.
General Methods--
TLC was performed on Silica Gel
F254-precoated aluminum sheets (0.2-mm layer, Merck,
Darmstadt, Germany); components were detected by spraying a ceric
sulfate ammonium molybdate solution followed by heating to
~150° C. Silica gel (Merck, 40-63 µm) was used for FC. GC
analyses were carried out on a DANI 3800 gas chromatograph (DANI,
Monza, Italy) using a homemade glass column (2 m × 2 mm inner diameter) packed with 20% Carbowax 20M on Chromosorb W (60-80 mesh). GC parameters were as follows: injector, 220 °C;
detector (flame ionization detection), 220 °C; carrier,
N2 (30 ml/min); oven, from 60 to 200 °C at 10 °C/min.
1H and 13C NMR spectra were acquired at 400.132 and 100.613 MHz on a Bruker AVANCE 400 Spectrometer using an Xwin-nmr
software package and at 200.133 and 50.330 MHz on a Bruker AC
200 (Bruker, Karlsruhe, Germany) equipped with an ASPECT 2000 data
system. Chemical shifts ( Medium and Growth Conditions--
Acetobacterium
strain LuPhet 1 (DSM 9077) was grown at 28 °C in the dark in
bicarbonate-buffered (30 mM, pH 7.2), sulfide-reduced (1 mM) freshwater mineral medium (20) with 10 mM
2-phenoxyethanol as sole organic carbon substrate under a
N2/CO2 atmosphere (80:20 v/v) as described
previously (12). 2-Phenoxyethanol was added from anoxic
filter-sterilized stock solutions. Besides other vitamins, the medium
contained about 40 nM cyanocobalamin. The addition of a few
crystals of dithionite shortened the lag phases. Cells were grown as
batch cultures of 0.5- or 1-liter volume in infusion bottles sealed
with butyl rubber septa. Growth was followed by measuring turbidity at
578 nm.
Cell Suspension Experiments with Labeled
2-Phenoxyethanol--
Cell suspensions were prepared under strictly
anoxic conditions in an anoxic chamber (Coy Laboratory Products, Ann
Arbor, MI) with an atmosphere of 5% H2 in N2.
Bacteria were harvested in the late exponential growth phase
(A578 = 0.1) by centrifugation at 11,000 × g and 4 °C for 30 min. Polypropylene centrifuge beakers were preincubated in the chamber for 2-3 days. Cells were washed once
with degassed potassium phosphate buffer (50 mM, pH 7.0) prereduced with 2.5 mM titanium(III)citrate and then
resuspended in freshwater mineral medium without substrate
(bicarbonate-buffered, 30 mM, pH 7.2, and sulfide-reduced,
1 mM) and transferred into a serum bottle sealed with a
butyl rubber stopper. The headspace in the bottle was exchanged to
N2/CO2 (80:20 v/v), and the cell suspension was
incubated at 28 °C under protection from light. The reaction was
started by the addition of labeled 2-phenoxyethanol to about 10 mM concentration. Aliquots (50 µl) were taken at regular intervals with a gas-tight syringe and injected into 200 µl of H3PO4 (100 mM) to stop all
enzymatic reactions. 2-Phenoxyethanol, phenol, and acetate were
analyzed with a high performance liquid chromatography system (System
Gold, Beckman Instruments) equipped with an AQ-ODS column (4.6 by 250 mm) from YMC Europe (Schermbeck, Germany) with an eluent composed of
ammonium phosphate buffer (100 mM, pH 2.6) and methanol.
The three compounds were measured simultaneously using a gradient from
5% methanol increasing to 60% methanol and detection at a 206-nm
wavelength. Concentrations were calculated via external standards. The
protein content in the cell suspension varied between 0.09 and 0.4 mg/ml. The reaction was stopped after substrate depletion or after a
maximum of 28 h by centrifugation at 11,000 × g
for 30 min and at 4 °C. The supernatant was filtered through a
cellulose acetate membrane filter with a pore size of 0.2 µm and
stored at 4 °C. From the supernatant the acetate was isolated by the
procedure described below.
Isolation of Acetate from the Reaction Mixture--
The neutral
or slightly alkaline aqueous phase was extracted three times with
chloroform to reduce the phenol and 2-phenoxyethanol content before
acidification to pH 1-2 by the addition of concentrated HCl. Then some
NaCl was added to the aqueous phase, and the acetic acid was extracted
with diethyl ether at least twice with a 5:1 ether-to-water volume
ratio. The ether phase was concentrated to few milliliters in
vacuo, and the acetic acid was dissociated by the addition of a
sufficient amount of sodium hydroxide (2 M) and
freeze-dried. Sodium acetate showed chemical shifts in the range
2-Phenoxy-[1-2H2]ethanol (3)--
This
substrate was prepared according to Ref. 22 with modifications as
follows. A solution of sodium phenoxide trihydrate (340 mg, 2 mmol) and
ethyl bromoacetate (1) (300 mg, 1.8 mmol) in ethanol (5 ml)
was refluxed under N2, monitoring the reaction
progress by TLC (petroleum ether/diethyl ether, 8:2) and GC.
After 4 h, the reaction mixture was diluted with water (10 ml),
acidified with 2 N HCl, and extracted with diethyl ether. The organic phase was washed with saturated NaHCO3, washed
with water, and dried over Na2SO4. Solvent
removal under reduced pressure followed by FC of the residue (eluent as
above) afforded ethyl phenoxyacetate (2) (230 mg, 71%
yield); pure by TLC (Rf 0.61) and GC
(tR 6.8 min), 1H NMR and EIMS as in
Ref. 23; 13C NMR as in Ref. 24. Compound 2 (200 mg, 1.1 mmol) in dry diethyl ether (2 ml) was added dropwise to a cold
(0 °C) suspension of LiAlD4 (92.4 mg, 2.2 mmol) in dry
diethyl ether (4 ml), and the reaction mixture was refluxed with
stirring under N2 for 5 h (GC control). After cooling
to room temperature, a saturated solution of
Na2SO4 was carefully added. The white salts
were removed by filtration and then washed with diethyl ether. The
filtrate was washed with water, dried (Na2SO4),
and evaporated under reduced pressure to give the title compound
3 (142 mg, 92% yield) pure by GC (tR
8.5 min); 1H NMR and EIMS as in Ref. 22; 13C
NMR (CDCl3, 50 MHz) 2-Phenoxy-[2-2H2]ethanol
(7)--
Benzyloxyacetyl chloride (4.7 g, 25.5 mmol) was added via a
syringe over 15 min to an ice-cooled solution of pyridine (5 ml) and
ethyl alcohol (4 ml) in dry dichloromethane (15 ml) under N2 with stirring. The reaction mixture was allowed to warm
to room temperature, and stirring was continued for 30 min followed by
quenching with 1 N HCl (20 ml). The two phases were
separated, and the organic one was washed with water (2 × 20 ml),
dried over Na2SO4, and concentrated under
reduced pressure to give a viscous oil. After purification by FC
(petroleum ether/ethyl acetate, 5:2), ethyl benzyloxyacetate
(4) (4.7 g, 95% yield) was obtained, pure by TLC
(Rf 0.46, eluent as above), 1H, and 13C
NMR (25). To an ice-cooled solution of the ester 4 (4.7 g,
24.2 mmol) in dry diethyl ether (40 ml) was added LiAlD4 (1.2 g, 47.6 mmol) in several portions. After further addition of
diethyl ether (10 ml), the reaction mixture was refluxed for 3 h.
Workup as described above for compound 3 afforded 2-benzyloxy-[1,1-2H2]ethanol (5)
(3.3 g, 89% yield), pure by TLC (Rf 0.15, eluent as above) and
GC (tR 8.7 min), which was used for the next
step without further purification; 1H NMR and EIMS as in
Ref. 26; 13C NMR (CDCl3, 50 MHz)
A stirred solution of PPh3 (2.0 g, 7.8 mmol) and
diisopropyl azodicarboxylate (1.5 ml, 7.8 mmol) in tetrahydrofuran (80 ml) at 0 °C was treated, sequentially, with a solution of freshly distilled phenol (1.1 g, 11.7 mmol) in tetrahydrofuran (5 ml) and then
with a solution of
2-benzyloxy-[1,1-2H2]ethanol (5)
(1.0 g, 6.5 mmol) over a period of 15 min. The reaction mixture was
allowed to warm to room temperature, stirred for an additional 1 h
(TLC control), and quenched by the addition of water (5 ml) and a few
drops of concentrated HCl. The solvent was removed under reduced
pressure, and the residue was taken up with diethyl ether (60 ml).
Insoluble materials were removed by filtration, and the filtrate was
washed with 2 N NaOH and with water, dried
(Na2SO4), and concentrated to approximately a
half-volume under reduced pressure. After further filtration of
insoluble materials, the solvent was removed under reduced pressure,
and the residue was purified by FC (petroleum ether/ethyl acetate, 9:1)
to give pure 6 (1.1 g, 73% yield); 1H NMR
(CDCl3, 200 MHz) (13C, 2H)-Labeled 2-Phenoxyethanols
(8-10)--
These substances were obtained using differently
13C-labeled ethyl bromoacetate and LiAlD4
according to the procedure described above for
2-phenoxy-[1-2H2]ethanol (3).
Ethyl phenoxy-[2-13C]acetate: 1H NMR
(CDCl3, 200 MHz) 2-Phenoxyethanol dideuterated at carbon-1 (3, D2-molecules > 98%) was prepared by
LiAlD4 reduction of ethyl 2-phenoxyacetate (2)
obtained, in turn, by the reaction of sodium phenoxide with
ethyl 2-bromoacetate (1) (22) (Fig.
2A). After the complete
fermentation of 3 by Acetobacterium under a
N2/CO2 atmosphere, sodium acetate was isolated
from the culture supernatant and examined by 1H and
13C NMR spectroscopy. It is understood that throughout this
study, spectra of sodium acetate (proton-decoupled in the case of
13C) were recorded using NaOD/D2O at pH > 10. The methyl regions of these spectra exhibited peaks assignable to a
mixture of mono- and non-deuterated acetate molecules only (Fig.
3, A and B).
Monodeuterated molecules are revealed by the typical patterns of
1H and 13C NMR signals due to the
CH2D and 13CH2D groups. In both
cases, this pattern consists of a 1:1:1 triplet (27)
(2JHD = 2.09 Hz,
JCD = 19.5 Hz) (28, 29), which is upfield with respect to the non-deuterated methyl group (2 When Acetobacterium cells were fed with
2-phenoxy-[2-2H2]ethanol (7)
prepared as shown in Fig. 2B, the resulting acetate was
found to be a mixture of dideuterated and non-deuterated molecules in
the ratio ~2.5:1. In fact, in the 1H and 13C
NMR spectra of this acetate, an upfield quintet (1:2:3:2:1) (27) was
present beside the singlets due to the non-deuterated methyl group
(2
After fermentation of sample 8, the 1H NMR
spectrum of the resulting acetate showed signals of CH2D
(triplet) and CH3 at a ratio from which ~45% dilution of
the biotransformation product with de novo synthesized
acetate could be calculated (neglecting satellite peaks due to
13CH2D and 13CH3
groups). A complete retention of the migrating deuterium atom (within
the limits of the experimental error) was indicated by the
13CH3/CH3 peak area ratio
approximating the value of 13C natural abundance
(~1.1%). In accordance with this assumption, the peak intensities
measured in the 13C NMR spectrum appeared in the expected
proportions, i.e. ~1:16:3 for the
13CH3 group (singlet at Only the peak due to the [13C]carboxylate group was
detectable in the 13C NMR spectrum of the acetate arising
from the bioconversion of 9. The 1H NMR spectrum
displayed singlet at Assuming the participation of the enzyme/coenzyme system as a hydrogen
carrier in the hydrogen 1,2-shift during the biodegradation of
2-phenoxyethanol, two possibilities could be envisaged: (i) the
hydrogen (deuterium) atom is abstracted from a substrate molecule, temporarily retained by the enzyme, and then transferred to another molecule (intermolecular transfer) or (ii) the migrating hydrogen (deuterium) is returned to the same glycolic unit from which it had
been abstracted (enzyme-mediated intramolecular transfer). To estimate
the relative extent of the two events, compound 10 was
administered to a cell suspension of Acetobacterium after dilution (18 to 100) with unlabeled 2-phenoxyethanol. When the acetate
isolated at the end of this fermentation was examined by 1H
NMR (Fig. 5A), no
signals assignable to the CH2D group were observed,
i.e. no signals of a triplet 13.5 ppb upfield shifted from
the singlet due to the CH3 group (Fig. 3A). This
result was consistent with a complete intramolecularity of the C-1
hydrogen migration. In addition, well resolved systems of satellite
peaks were present in the proton NMR spectrum (Fig. 5A) due
to isotopomers containing 13CH3 and
13CH2D groups. The multiplicity of the system
corresponding to the [13C,D]methyl group, i.e.
a doublet of 1:1:1:1:1:1 sextets (doublet centered upfield with respect
to the CH3 singlet in agreement with the expected deuterium
isotope shift), was indicative of a strong prevalence of
13CH2D-13CO
These findings were corroborated by the following considerations: (i)
by inspection of methyl and carboxyl regions of the 13C NMR
spectrum (Fig. 5, B and C) the composition of the
13C isotopomeric mixture was estimated to be:
13CH2D-13CO
In the light of a previous report (12) and in light of the results
obtained by feeding experiments performed using 1H- and
13C-labeled substrates and resting cell suspensions of
Acetobacterium strain LuPhet1, the conversion of
2-phenoxyethanol into acetate and phenol can be summarized as follows.
Acetate originates from the glycolic moiety of 2-phenoxyethanol through
elimination of phenol with formation of acetaldehyde, which is then
oxidized in subsequent steps with retention of its molecular integrity (Fig. 1). In the first reaction, the alcoholic function of the substrate becomes a formyl group, whereas the adjacent methylene group
is transformed into a methyl group with concomitant 1,2-hydrogen shift
(Reaction 1). These features are strongly reminiscent of the
dioldehydratase-catalyzed reactions for which a generally accepted
mechanism is schematized in Fig.
6A for 1,2-ethanediol (11, R = H) (18, 33). The whole process
encompasses a double H/OH interchange giving rise to the
gem-diol (14, R = H) (15, 34, 35)
that rapidly collapses to the aldehyde 15. Its radical
nature has largely been proven (33, 36, 37) and appears to be
consistent with the transfer of a hydrogen atom from the C-1 of the
substrate to a transient radical (X·) and then back
to C-2 of the product-related radical (13, R = H), generated in turn by a hydroxyl 1,2-shift.
If an analogous rearrangement occurs in the anaerobic degradation of 2-phenoxyethanol (11, R = C6H5) with formation of the labile hemiacetal (14, R = C6H5), the migration of the phenoxyl group should be assumed given the metabolic correlation between each carbon atom of the glycolic unit of 2-phenoxyethanol and those of the acetate molecule (Reaction 1). Thus, the opposite pathway, i.e. the 1,2-hydroxyl shift suggested previously (11, 12), has to be ruled out. Considering that no evidence has been given so far for the formation of
the hemiacetal (14, R = C6H5), an alternative mechanism can be
envisaged with regard to the subsequent transformation of the radical
intermediate (12, R = C6H5) (Fig. 6A). This mechanism
(Fig. 6B), based on the intermediacy of the resonance stabilized ( We have found that in the biotransformation of 2-phenoxyethanol, the
exchange of the migrating hydrogen atom with the medium occurs only to
a negligible extent, if at all, and that its 1,2-shift is
intramolecular (even if enzyme-mediated). The fact that the hydrogen
atom abstracted from the C-1 position of the substrate is returned
quantitatively to the adjacent position of the same molecule requires
that the hydrogen carrier be monoprotic (XH in Fig.
6B). It can be noted that such a facet of the phenoxyethanol acetaldehyde lyase recalls the reaction mechanism of
adenosylcobalamin-dependent ribonucleotide reductase of
Lactobacillus leichmannii, which involves a protein-based
cysteinyl radical as a catalytically competent intermediate (43).
Although the
* This work was supported in part by a grant from the Deutsche Forschungsgemeinschaft, Bonn in its priority program "Radicals in enzymatic catalysis."The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
§ To whom correspondence should be addressed: Dipartimento di Chimica Organica e Industriale, Università degli Studi di Milano, via Venezian 21, 20133 Milano, Italy. Tel.: 39-02-5031-4097; Fax: 39-02-5031-4072; E-mail: giovanna.speranza@unimi.it.
Published, JBC Papers in Press, January 22, 2002, DOI 10.1074/jbc.M111059200
The abbreviations used are: PEG, polyethylene glycol; EG, ethylene glycol; TLC, thin layer chromatography; FC, flash chromatography; GC, gas chromatography; EIMS, electron impact mass spectrometry; rel. int., relative intensity.
Copyright © 2002 by The American Society for Biochemistry and Molecular Biology, Inc. This article has been cited by other articles:
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