Originally published In Press as doi:10.1074/jbc.M200582200 on February 7, 2002
J. Biol. Chem., Vol. 277, Issue 17, 14564-14574, April 26, 2002
Redox Effector Factor-1 Regulates the Activity of Thyroid
Transcription Factor 1 by Controlling the Redox State of the N
Transcriptional Activation Domain*
Gianluca
Tell
§,
Alex
Pines
,
Igor
Paron¶,
Angela
D'Elia¶,
Alessia
Bisca
,
Mark R.
Kelley
,
Giorgio
Manzini
, and
Giuseppe
Damante¶
From the
Dipartimento di Biochimica, Biofisica e
Chimica delle Macromolecole, via Giorgieri 1, Università degli
Studi di Trieste, Trieste 34127, Italy, the ¶ Dipartimento di
Scienze e Tecnologie Biomediche, P. le Kolbe 1, Università degli
Studi di Udine, Udine 33100, Italy, and the
Department of
Biochemistry and Molecular Biology, Indiana University School of
Medicine, Indianapolis, Indiana 46202
Received for publication, January 18, 2002, and in revised form, February 5, 2002
 |
ABSTRACT |
Thyroid transcription factor 1 (TTF-1) is a
homeodomain-containing transcriptional regulator responsible for the
activation of thyroid- and lung-specific genes. It has been
demonstrated that its DNA binding activity is redox-regulated in
vitro through the formation of dimers and oligomeric species. In
this paper, we demonstrate that the redox regulation mainly involves a
Cys residue (Cys87), which resides out of the DNA binding
domain, belonging to the N-transactivation domain. In fact, the
oxidized form of a truncated TTF-1 (containing the N-transactivation
domain and the DNA-binding domain, here called TTF-1N-HD) looses
specific DNA binding activity. Since most of the oxidized TTF-1N-HD is
in a monomeric form, these data indicate that the redox state of
Cys87 may control the DNA-binding function of the
homeodomain, suggesting that Cys87 could play an important
role in determining the correct folding of the homeodomain. By using
gel retardation and transient transfection assays, we demonstrate that
the redox effector factor-1 (Ref-1) mediates the redox effects on
TTF-1N-HD binding and that it is able to modulate the TTF-1
transcriptional activity. Glutathione S-transferase
pull-down experiments demonstrate the occurrence of interaction between
Ref-1 and TTF-1N-HD. Having previously demonstrated that Ref-1 is able
to modulate the transcriptional activity of another thyroid-specific
transcription factor (Pax-8), our data suggest that Ref-1 plays a
central role in the regulation of thyroid cells.
 |
INTRODUCTION |
Thyroid transcription factor 1 (TTF-1,1 also named Nkx2.1)
is a tissue-specific transcription factor (TF) that controls the expression of some thyroid- and lung-specific genes (1). However, it is
not well ascertained how TTF-1 is able to activate the transcription of
thyroid-specific genes (such as those of thyroglobulin and thyroperoxidase) only in the follicular thyroid cell (2) and the
transcription of lung-specific genes (such as those encoding for
surfactant proteins) exclusively in epithelial lung cells (3). Thus,
unknown regulatory mechanisms must control the TTF-1 transcriptional
function. TTF-1, similarly to the large majority of eukaryotic
promoter-specific TFs, displays a modular nature. In fact, the two
basic molecular functions (i.e. specific DNA binding and
transcriptional activation) are performed by distinct domains. The
DNA-binding function is brought on by the homeodomain (HD) that
recognizes, with high affinity, DNA sequences containing the 5'-CAAG-3'
core motif (4). Moreover, TTF-1 exhibits two independent
transcriptional activation domains, located at the N-terminal (N
domain) and at the C-terminal (C domain) regions with respect to the HD
(Fig. 1 and Ref. 5). It has been previously demonstrated that the N
domain plays a leading role in the activation of the transcriptional
machinery, being able to squelch both its own transcriptional activity
and the C domain one (5). Moreover, the N domain directly interacts
with the TATA-binding protein TBP (6). Therefore, regulatory
mechanisms, acting upon the N domain, could control the activity of the
whole molecule.
The modulation of a TF activity is achieved by different means: (i) at
a translational level, through the regulation of the expression of the
TF itself, and (ii) at a post-translational level, through
modifications such as phosphorylation and glycosylation, occurring at
specific residues of the TF. During the last few years, another
kind of post-translational regulation has become increasingly evident
(i.e. redox regulation). This control is exerted through the
modulation of the oxidation/reduction state of the thiol groups of
cysteine residues usually present in the DNA-binding domain of TFs
themselves. It has been previously demonstrated that the DNA binding
activity and the dimerization ability of TTF-1 are redox-regulated
in vitro (7). It was shown that a reducing environment is
required, in vitro, for a proper DNA-binding activity and
that oxidation promotes (i) the formation of disulfide bond(s) between
two specific cysteine residues (87 and 363) located outside the
homeodomain and (ii) the formation of higher order oligomers of the
protein itself.
Ref-1 has been identified as a protein capable both of
apurinic/apyrimidinic endonuclease DNA repair activity and nuclear redox activity, being able to induce the DNA binding activity of AP-1,
NF-
B, Myb, members of the ATF/cAMP-response element-binding protein
family, hypoxia-inducible factor (HIF-1
) (8), and Pax proteins (9).
Moreover, recent developments have pointed out a primary role for Ref-1
in pathways of activation of p53, through redox mechanism (10),
together with a direct interaction with p53 itself in vivo
(11). As for its apurinic/apyrimidinic endonuclease activity, Ref-1 is
better known by the acronym APE, which accounts for the role it plays
in repairing of DNA damage. This process is due to reactive oxygen
species, such as superoxide anion (O
),
H2O2, and the hydroxyl radical (·OH),
which are by-products of respiration. Ref-1 protein expression is
selectively induced by nontoxic levels of a reactive oxygen species
variety. This is thought to be due to a translational induction, being inhibited by treating cells with cycloheximide (12).
Moreover, we have recently demonstrated that reactive oxygen species
are able to induce Ref-1 nuclear translocation in B-cells (13) as well
as in thyroid cells (14). It is largely known that, in thyroid cells,
the production of reactive oxygen species occurs after thyrotropin
(TSH) stimulation and plays a key role during thyroid hormone synthesis
(15-18). We have concordantly demonstrated that cytoplasm to nucleus
translocation of Ref-1 occurs in thyroid cells upon TSH stimulation.
These findings suggest that the Ref-1-mediated mechanism may constitute
a major switch by which TSH controls thyroid cells. This view is
supported by the observation that Ref-1 controls the DNA-binding
function of Pax-8, which is another thyroid-specific TF. Pax-8
recognizes the DNA by means of a conserved DNA-binding domain called
the paired domain. A conserved Cys residue at position 37 of the Pax-8 paired domain is responsible for the redox regulation of the DNA binding activity (9). The Cys37 residue is required to be
in a reduced state in order to allow the structural transition of the
Prd domain required for a proper DNA binding. This feature is
accomplished, in vivo, through Ref-1, which is able to
induce the Pax-8-driven transactivation potential of the
thyroid-specific thyroglobulin promoter, as we have demonstrated by
co-transfection assays in HeLa cells (19).
In this paper, we show that the redox control of DNA binding activity
demonstrated for TTF-1 (7) is exerted by a unique Cys residue
(Cys87), which represents the "redox sensor" of the
molecule. Differently from Pax-8 and other TF studied up to now, this
Cys residue, involved in the redox control, resides outside the DNA
binding domain, mapping in the N transcriptional activation domain of
TTF-1. Moreover, the redox regulation demonstrated in vitro
is performed, in vivo, by Ref-1. Together with those
previously reported by us and other authors (20), our data suggest a
master role for Ref-1 in the control of the thyroid cell physiology.
 |
EXPERIMENTAL PROCEDURES |
Oligodeoxynucleotide Synthesis and
Purification--
Oligodeoxynucleotides were synthesized with an
automated Applied Biosystems DNA synthesizer, model 380B, according to
standard procedures and purified by fast protein liquid chromatography using a Mono-Q column (Amersham Biosciences) eluted with an ammonium bicarbonate gradient. The purity of oligonucleotides was controlled on
a 20% polyacrylamide, 7 M urea gel electrophoresis.
DNA Constructs--
DNA encoding for recombinant
TTF-1 N-domain protein was obtained by PCR using the primer TH1
(5'-GGCGCGGATCCATGTCGATGAGTCCAAAGCACACG-3') and primer TH2
(5'-CCGCGGGATCCCTTGTCCTTCGCCTGGCGCTTCAT-3') and, as template, the
plasmid CMV-TTF1 (5). The PCR product was BamHI-digested and
cloned into the bacterial expression vector pQE12 (Qiagen).
Plasmid pTACAT3 contains the wild-type Tg promoter linked to the
chloramphenicol acetyltransferase (CAT) gene, and it is described in
Ref. 21. Plasmid with the promoter C5E1b as well as plasmids expressing proteins TTF-1 and
14 were described elsewhere (5). Plasmids CMV-CAT, RSV-CAT, and Ki-Ras-CAT containing the CMV, RSV, and
Ki-Ras promoters linked to the CAT gene (19, 22, 23) together with the
plasmid PGL-2 (Promega), containing the promoter and enhancer sequences
of SV40 linked to the luciferase gene (LUC), were
used in cotransfection studies with Ref-1-expressing plasmid.
The mutant C87S of the
14 construct (C87S
14) and of the
recombinant TTF-1N-HD cloned in pQE12 plasmid were created by the QuickChange site-directed mutagenesis kit (Stratagene), using as
template the
14 or the pQE12TTF-1N-HD constructs and the following oligonucleotides: C87Sa (5'-GCC GTG GGG GGC TAC TCT AAC GGC AAC CTG
GGC-3') and C87Sb (5'-GCC CAG GTT GCC GTT AGA GTA GCC CCC CAC GGC-3').
The introduced mutation was verified by nucleotide sequencing of the
entire constructs.
Recombinant Ref-1 His-tagged expressing plasmid pDS56Ref-1
was kindly provided by Dr. T. Curran (St. Jude Children's Research Hospital, Memphis, TN) together with the eukaryotic expression vector
CMV-Ref-1.
Protein Expression and Purification--
The cDNA coding for
amino acids 1-230 of rat TTF-1 was cloned into the vector pQE12
(Qiagen) in frame with the coding region of six histidine residues.
Thus, the expressed protein (TTF-1N-HD) contains an extra hexahistidine
sequence at the C terminus, allowing for protein purification by
nickel/nitrilotriacetic acid affinity chromatography. The TTF-1N-HD
wild type protein (named TTF-1N-HDWT) and its C87S mutant (named
TTF-1N-HDC87S) were expressed in M15 Escherichia coli cells.
Overnight cultures were inoculated into Luria-Bertani (LB) medium
supplemented with 50 µg/ml Ampicillin and grown at 37 °C to
A600 0.6-0.7, and then they were induced by 1 mM isopropyl-1-thio-
-D-galactopyranoside for
3 h. At the end of the induction phase, bacteria expressing
recombinant TTF-1N-HDWT or TTF-1N-HDC87S proteins were pelleted and
resuspended in 10 ml of lysis buffer A (20 mM Tris, pH 8.0, 250 mM NaCl, 0.1% Tween 20, 1 mM
-mercaptoethanol, 0.1 mM phenylmethylsulfonyl fluoride, 0.8 mM imidazol) for each gram of bacterial pellet and
centrifuged at 10,000 × g for 20 min at 10 °C. The
supernatants were loaded onto a nickel/nitrilotriacetic acid column,
equilibrated with buffer A, and washed with 10 volumes of buffer A. The
protein was eluted with buffer B (20 mM Tris, pH 8.0, 250 mM NaCl, 0.1% Tween 20, 1 mM
-mercaptoethanol, 0.1 mM phenylmethylsulfonyl fluoride,
500 mM imidazol). Sample concentrations were determined either spectrophotometrically (using
278 23,470 M
1·cm
1 calculated as
described previously (24)) or by Bradford colorimetric assay (25). The
purified proteins gave a single band on an overloaded SDS-PAGE.
Fractions containing purified proteins were dialyzed against water and
then stored at
80 °C.
Recombinant Ref-1 protein (rRef-1) was obtained as a hexahistidine tag
fusion protein from overexpression in E. coli and then purified by nickel-chelate chromatography from bacterial extracts and
treated as previously described (26). Glutathione
S-transferase (GST)-Ref-1 protein was obtained as previously
described (27).
Electromobility Shift Assay (EMSA) Analysis--
Double-stranded
oligodeoxynucleotides, labeled at the 5'-end with 32P, were
used as probes in gel retardation assays. The C14 oligonucleotide is a
14-mer whose upper strand is 5'-CAGTCAAGTGTTCT-3' (28). The gel
retardation assay was performed by incubating protein and DNA in a
buffer containing 20 mM Tris-HCl, pH 7.6, 75 mM
KCl, 0.25 µg/ml bovine serum albumin with or without calf thymus DNA (50 µg/ml) as reported in the figure legends, 10% glycerol for 30 min at room temperature. Protein-bound DNA and free DNA were separated
on a native polyacrylamide gel run in 0.5× TBE for 1.5 h at
4 °C. The gel was dried and then exposed to an x-ray film at
80 °C. When required, in vitro protein oxidation was
obtained by prolonged air exposure or by diamide treatment.
Protein-DNA UV Cross-linking--
The monomeric binding of
TTF-1N-HDWT and the C87S mutant on the C14 sequence were determined by
UV cross-link analysis, following the procedure of Molnar et
al. (29). Briefly, proteins and DNA were incubated as described
for EMSAs but without glycerol. After 30 min, aliquots were
either loaded onto a native polyacrylamide gel to detect the
protein-DNA complexes or subjected to UV cross-linking analysis (300 nm, 50 W) for 10 min. After UV exposure, 4× Laemmli sample buffer with
or without
-mercaptoethanol was added, and samples were loaded onto
a 12% SDS-PAGE. Following electrophoresis, the gel was dried and
exposed to autoradiography. Prestained protein molecular markers were
from MBI Fermentas.
Cell Line and Transfections--
HeLa cells were grown in
Dulbecco's modified Eagle's medium supplemented with 10% fetal calf
serum, glutamine, and antibiotics. For transient transfection assays,
cells were plated, 12 h before transfection, at 0.3 × 106 cells/100-mm culture dish. Transfections were carried
out using a calcium phosphate method (30). The following amounts of
plasmids were transfected: pTACAT3 (3 µg), C5E1b (3 µg),
CMV-
-galactosidase (2 µg), RSV-CAT (3 µg), Ki-Ras-CAT (3 µg),
PGL-2 (3 µg), CMV-CAT (3 µg). CAT was measured by an ELISA
method (Roche Molecular Biochemicals). A CMV-
-galactosidase
expression plasmid was used as an internal control for transfection
efficiency, according the protocol provided by the manufacturer (Roche
Molecular Biochemicals). LUC activities were measured by a
chemiluminescence procedure (31).
GST Pull-down--
For pull-down experiments, Ref-1 was
expressed as GST fusion protein. For the interaction between the
purified TTF-1N-HD and GST-Ref-1, 100 ng of the former and 500 ng of
the latter were mixed for 30 min at room temperature, coprecipitated by
30 µl of GST-agarose (Amersham Biosciences), washed three times with PBS in the presence of 0.1% Nonidet P-40, and eluted by 50 µl of 10 mM GSH in PBS. Eluted samples were subjected to 12%
SDS-PAGE and immunoblot with
-His (Amersham Biosciences) or
-TTF-1 antibodies or to EMSA analysis with the radiolabeled
oligonucleotide C14. The blots were developed using the ECL
chemiluminescence method (Amersham Biosciences).
 |
RESULTS |
Oxidation Reversibly Inactivates TTF-1N-HD DNA Binding
Activity--
It has been previously demonstrated that a reducing
environment is required for a proper DNA-binding activity by the TTF-1 whole molecule (7). Two of the four Cys residues of TTF-1
(Cys87 and Cys363) had turned out to be
the targets of the redox control, which is mainly exerted, in
vitro, through the modulation of the oligomerization state of
TTF-1. The authors proposed that a role for this kind of regulation may
occur in vivo, hypothesizing the presence of an unknown
co-factor for the control of the redox state of TTF-1. However, our
previous data demonstrated that Cys87, on its own, is
sufficient for controlling the dimerization state of TTF-1, therefore
suggesting a master role for this residue in the TTF-1 redox control
(6). To test if the reducing environment may affect the DNA binding
function of TTF-1 HD, through the modulation of the redox state of
Cys87, we tested the ability of a deleted form of TTF-1,
TTF-1N-HD (see Fig. 1), containing only
the N domain and the HD, to specifically recognize the high affinity
DNA-binding site (oligonucleotide C14). The specific TTF-1N-HD binding
activity to the site C14, assessed by EMSA and in the presence of a
specific competitor DNA from calf thymus, was abolished after the
addition of the oxidizing agent diamide
(1,1'-azobis(N-dimetilformamide)) (see Fig.
2A, lane
3 versus lane 2). This
effect was observed at a concentration as low as 0.1 mM
diamide and was completely reversible by the addition of an excess of
the reducing agent dithiothreitol (DTT) (Fig. 2A,
lane 4), thus underlying a possible functional role in vivo. As has been previously demonstrated by Arnone
et al. (7), the loss of DNA binding activity is not directly
attributable to a loss of binding by the HD, because it does not
contain Cys residues and it is not sensible to modulation of redox
conditions (Fig. 2B). To assess whether the DNA binding
inhibition seen for TTF-1N-HD could be related to the dimerization
state of the protein, we performed SDS-PAGE analysis of the samples
used in the EMSA experiments described above. The monomeric state of
the TTF-1N-HD protein was dependent on redox conditions. The protein
was totally present as a single monomeric form only under reducing
conditions (data not shown). Following a treatment with 5 mM diamide, dimeric species were present. However, it
should be noticed that a considerable amount (about 80% of the total
protein) of monomeric protein is still available in the oxidizing
environment (data not shown). Therefore, dimerization does not account
for the complete loss of specific DNA binding activity demonstrated in
Fig. 2.

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Fig. 1.
Schematic structure of TTF-1 protein and of a
truncated form of it that is the object of this study. The
structure of the entire protein is depicted in the upper
scheme with the position of the Cys87 indicated
by an underline. The structure of the TTF-1N-HD
protein is depicted in the lower part of the
scheme. Note that the TTF-1N-HD protein is composed by the
N-domain, which represents the TAD, and by the HD, which is the
DNA-binding domain of TTF-1 (5) but completely lacks the C-domain,
which bears three more Cys residues and whose function is still
controversial.
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Fig. 2.
Redox potential controls the DNA binding
activity of TTF-1N-HD. A, EMSA of the oxidized and
reduced forms of TTF-1N-HD incubated with the C14 sequence. In each
lane, except the first, which represents the
oligonucleotide probe alone, DNA binding was obtained by incubating 80 ng of purified TTF-1N-HD with 100 fmol of 32P-labeled
oligonucleotide C14. B, EMSA of the oxidized and reduced
forms of the TTF-1 HD incubated with the C14 sequence. In each
lane, except the first that represents the oligonucleotide
probe alone, DNA binding was obtained by incubating 5 ng of purified
TTF-1 HD with 100 fmol of 32P-labeled oligonucleotide C14.
In each panel, the reduced forms of the recombinant
TTF-1N-HD or TTF-1 HD were obtained by treatment with 5 mM
DTT for 5 min at room temperature (lanes 2). The oxidized
forms were obtained by treatment of the purified proteins with 5 mM diamide for 5 min at room temperature (lanes
3). To test the reversibility of the oxidation process, samples
obtained by oxidation with 5 mM diamide were subsequently
treated with an excess of 50 mM DTT for 5 min at room
temperature (lanes 4). At the end of the treatments, each
sample was incubated with the 32P-labeled oligonucleotide
C14 for 20 min at room temperature in the presence of competitor calf
thymus DNA (50 µg/ml) and loaded onto a native polyacrylamide gel for
EMSA analysis. The arrow labeled with B indicates
the protein-DNA complex; the arrow labeled with F
indicates the free oligonucleotide.
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Oxidation of TTF-1N-HD Decreases Its DNA Binding
Specificity--
To characterize in a better way the reasons why the
oxidized form of TTF-1N-HD was unable to recognize the C14 sequence,
the specific binding activity of this protein was evaluated in the presence of decreasing amounts of competitor DNA (genomic calf thymus
DNA) and in reducing and oxidizing conditions (Fig.
3A). As is evident from
lanes 5-7 of Fig. 3A, the oxidized
form of TTF-1N-HD was still able to interact with the oligonucleotide C14 sequence. However, the affinity of this interaction was lower if
compared with that observed when the protein was present in the reduced
form (Fig. 3A, lanes 2-4). From the
relative densitometric evaluation of the retarded bands present in
A, and then reported in B, the loss of specific
DNA binding by the oxidized protein is strikingly evident in the
presence of genomic DNA. Absolute quantitation of the retarded bands in
oxidizing conditions revealed that the amount of the reduction in DNA
binding affinity can be estimated at 3 orders of magnitude (Fig.
3C). These results suggest that the weakening of the
TTF-1N-HD/oligonucleotide C14 interaction by oxidation would be due to
(i) absolute loss of binding activity or (ii) inability to discriminate
between different DNA sequences with following subtraction of protein
involved in nonspecific bonds.

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Fig. 3.
Oxidation decreases TTF-1N-HD DNA-binding
affinity. A, EMSA of the reduced (lanes
2-4) and oxidized (lanes 5-7) forms of TTF-1N-HD
incubated with 32P-labeled oligonucleotide C14 in the
presence of different amounts of calf thymus competitor DNA, as
indicated. In each lane, except the first, which represents
the oligonucleotide probe alone, DNA binding was obtained by incubating
80 ng of purified TTF-1N-HD with 100 fmol of 32P-labeled
oligonucleotide C14. The reduced forms of the recombinant TTF-1N-HD
protein were obtained by treatment with 5 mM DTT for 5 min
at room temperature, and the oxidized forms were obtained by treatment
of the protein with 5 mM diamide for 5 min at room
temperature. At the end of the treatments, each sample was incubated
with the 32P-labeled oligonucleotide C14 for 20 min at room
temperature and loaded onto a native 10% polyacrylamide gel for EMSA
analysis. The arrow labeled with B indicates the
protein-DNA complex. B, the densitometric scannings relative
to the bound complexes with respect to the bound signal obtained at the
lowest concentration of competitor DNA. Open bars
represent data obtained in reducing conditions, while solid
bars represent data obtained in oxidizing conditions.
C, the band intensity ratios of the bound complexes obtained
in reducing conditions, relative to oxidizing conditions at the
different concentrations of competitor DNA.
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Ref-1 Mediates the Redox Regulation Acting on the
TTF-1N-HD--
Ref-1 is the major cofactor involved in redox
regulation of several TFs, and it also plays a primary role in thyroid
cells (14). To test whether Ref-1 is also able to control the DNA binding activity of the isolated TTF-1N-HD, we performed an EMSA analysis with the oxidate form of the TTF-1N-HD protein and the rRef-1
protein. As we have previously demonstrated, the oxidized form of the
TTF-1N-HD was unable to show any kind of specific DNA-binding activity
(Fig. 4A, lane
4). However, the presence of Ref-1 was sufficient per
se to reconstitute the complete binding activity (lane
5) as in the presence of DTT (lane 3).
The role of Ref-1 is not directed to the HD, since, as demonstrated in Fig. 4B, the addition of rRef-1 to the sample does not
affect the HD DNA binding affinity (lane 5). To
test the specificity of the redox control played by Ref-1 over
TTF-1N-HDWT, we performed EMSA analysis of the oxidized form of
TTF-1N-HDWT in the presence of three unrelated proteins: cytochrome
c (Fig. 4C, lane 6), bovine serum albumin (lane 7), and ovalbumin
(lane 8). As is evident from Fig. 4C,
the three proteins are not able to rescue the DNA binding activity of
the oxidized TTF-1N-HDWT with respect to Ref-1 (lanes
4 and 5).

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Fig. 4.
rRef-1 is a stimulator of TTF-1N-HD DNA
binding activity. A, DNA binding by 80 ng of
recombinant TTF-1N-HD with the 32P-labeled oligonucleotide
C14 (100 fmol) in the absence (lane 2) or presence of 2 µg
(lane 5) of rRef-1 or of the reducing agent DTT 5 mM (lane 3) was analyzed by EMSA. Lane
1 represents probe alone. The oxidized forms of the recombinant
TTF-1N-HD were obtained by treatment of the protein with diamide 5 mM for 5 min at room temperature (lanes 4 and
5). B, DNA binding by 5 ng of recombinant TTF-1
HD with the 32P-labeled oligonucleotide C14 (100 fmol), in
the absence (lane 2) or presence of 2 µg (lane
5) of rRef-1 or of the reducing agent DTT (5 mM)
(lane 3) was analyzed by EMSA. Lane 1 represents
probe alone. The oxidized forms of the recombinant TTF-1 HD were
obtained by treatment of the protein with diamide 5 mM for
5 min at room temperature (lanes 4 and 5). The
arrow labeled with B indicates the protein-DNA
complex; the arrow labeled with F indicates
the free oligonucleotide. Note that this experiment was performed with
the highest concentration of calf thymus DNA (50 µg/ml) as
competitor. C, cytochrome c (Cyt c),
bovine serum albumin, and ovalbumin (OVA) are not able to
rescue the loss of TTF-1N-HD DNA binding activity obtained by oxidation
with diamide. DNA-binding activity by 80 ng of TTF-1N-HD with the
32P-labeled oligonucleotide C14 (100 fmol) in the absence
(lane 3) or presence of rRef-1 (lanes
4 and 5) or the proteins cytochrome c
(lane 6), bovine serum albumin (BSA)
(lane 7), or ovalbumin (lane
8). The specificity of the retarded complex is tested with
the -His antibody (lanes 9 and 10).
Lane 11 contains the rRef-1 alone. The
specificity of the supershifted complex is tested by incubating the
TTF-1N-HD/C14 sample with equal amounts of preimmune serum
(lane 12).
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In Vitro Association between TTF-1N-HD and Ref-1--
Ref-1 has
been shown to be the redox regulator of different TFs (8-10, 32).
However, there has been direct evidence that documents a physical
interaction between the two proteins (33) only in the case of p53. To
test this possibility in the case of TTF-1, we used a GST pull-down
approach. After expression and purification of Ref-1 as GST fusion
protein (27), we applied GST pull-down for testing the interaction with
TTF-1N-HD (see "Experimental Procedures" for details). As is
evident from Fig. 5, TTF-1N-HD
specifically interacts with GST-Ref-1 but not with GST alone,
demonstrating the occurrence of the interaction between the two
proteins.

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Fig. 5.
Detection of the association between
TTF-1N-HD and rRef-1 through GST pull-down assay. 500 ng of
GST-Ref-1 or GST alone were incubated with 100 ng of TTF-1N-HDWT, and
then the mixtures were trapped by GST-agarose followed by three
washings in PBS, 0.1% Nonidet P-40 and eluted by the addition of 10 mM GSH in PBS. Then the eluted samples were either analyzed
by immunoblotting using -His (left panel) or
-TTF-1 (not shown) antibodies following 12% SDS-PAGE separation or
by EMSA analysis (right panel).
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Ref-1 Increases the TTF-1N Domain Transcriptional Activity in
Vivo--
To test if the stimulatory effect of Ref-1 on the TTF-1
N-domain activity could have relevance in vivo (Fig.
6), a cell transfection approach was
used. The thyroglobulin promoter (Tg) is not functional when
transfected in HeLa cells, and its activity can be reconstituted by the
forced expression of the construct
14, which encodes for the partial
TTF-1 protein containing the transactivating N-domain and the DNA
binding domain (HD) (5). We wondered if the co-transfection of a Ref-1
expression vector was able to modify the
14 effect on this promoter.
Results are shown in Fig. 6A. As expected, the Tg promoter
is inactive in HeLa cells, and the expression of
14 is able to
activate it. The co-transfection of a Ref-1 expression vector increases
the
14-induced activation of Tg construct by 2-fold (Fig.
6A). The activity of Ref-1 is specific, since the activities
of the CMV, RSV, Ki-Ras, and SV40 promoters are not modified by the
co-transfection of the Ref-1 expression vector (Fig. 6C).
Similar data have been obtained in the case of the TTF-1 whole molecule
(Fig. 6A), suggesting that the redox control exerted by
Cys87 in the transactivation domain plays a pivotal role
over the other Cys residues of the molecule and that, in terms of redox
regulation, the transcriptional activity of
14 recapitulates that of
the whole molecule. The redox control is specific for the promoters activated by TTF-1. In fact, similar effects are observable by using an
artificial promoter (called C5) obtained through polymerization of five
C sites (Fig. 6B) recognized by TTF-1. To exclude the possibility that the stimulatory effect of Ref-1 over TTF-1 could be
due to an altered expression of TTF-1 itself, Western blot analysis of
transfected cells was always performed in order to measure the TTF-1
protein levels before and after Ref-1 expression. Data not shown
clearly demonstrate the absolute independence of the TTF-1 protein
levels from those of Ref-1.

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Fig. 6.
Effect of Ref-1 on the activity of Tg, C5,
RSV, Ki-Ras, SV40, and CMV promoters. Plasmids were transfected in
HeLa cells at the indicated amounts (see "Experimental Procedures"
for details). 48 h after transfections, cells were harvested, and
CAT, LUC, and -galactosidase activities were measured.
A, effect of Ref-1 on 14- and entire TTF-1-induced
activity of Tg promoter. B, effect of Ref-1 on 14- and
entire TTF-1-induced activity of C5 promoter; C, effect of
Ref-1 on the CMV, RSV, Ki-Ras, and SV40 promoters. Open
bars represent data of transfections without the Ref-1
construct, whereas solid bars represent data of
transfections with the Ref-1 construct. In all panels,
bars indicate the mean value ± S.D. of at least five
independent experiments.
|
|
The redox regulation mediated by Cys87 in the activation
domain seems to be due to the control of the binding activity of TTF-1. However, at the moment we cannot exclude a stimulatory effect of Ref-1
directly on the transcriptional activation domain of TTF-1, involved in
possible interactions with proteins of the basal transcriptional machinery.
Cys87 Is Responsible for the Ref-1-mediated Redox
Control over TTF-1 Transcriptional Activity--
To test if the
Cys87-mediated oxidation specifically controls the
transcriptional activity of TTF-1, a
14 mutant was constructed, in
which a Ser residue replaces the Cys at position 87. The
transcriptional activity of the C87S
14 mutant is reported in Fig.
7. A couple of transcriptional features
of this mutant are evident: (i) higher constitutive basal
transcriptional activity with respect to the wild type protein and (ii)
complete redox insensitivity toward Ref-1 action. These results greatly
support the importance of Cys87 for the redox regulation of
TTF-1 activity, suggesting that it is necessary and sufficient for the
redox control. The increase in the basal level of transcription
obtained in the case of the mutant, with respect to the wild type
protein, would suggest that at least two forms of TTF-1 are present in
a cell: a reduced one, which is active in terms of specific DNA binding
and an oxidized form bearing lower specific activity.

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Fig. 7.
The Cys87
Ser mutation in 14
abolishes Ref-1-mediated transcriptional activation on Tg
promoter. Plasmids were transfected in HeLa cells at indicated
amounts (see "Experimental Procedures" for details). 48 h
after transfections, cells were harvested, and CAT and
-galactosidase activities were measured. A, effect of
Ref-1 on 14- and C87S 14-induced activity of Tg promoter.
B, relative increase of transcriptional activity induced by
the co-transfection with Ref-1 of 14- and C87S 14-mediated
activity on Tg promoter, calculated from data of A.
|
|
Cys87 Controls TTF-1 DNA Binding Activity--
To test
the effect, at the molecular level, of Cys87 to Ser
mutation and therefore to determine whether this residue is involved in
controlling the DNA binding activity of TTF-1N-HD through redox modulation, the C87S mutant (here called TTF-1N-HDC87S) was expressed, as His6 fusion protein, in bacteria and purified to
homogeneity by using the nickel/nitrilotriacetic acid-agarose resin, as
described under "Experimental Procedures." Then its DNA binding
activity was tested by EMSA analysis, and results are reported in Fig. 8A. In striking contrast to
the wild-type protein, oxidative conditions by the addition of diamide
do not affect at all the DNA binding activity of the C87S mutant (Fig.
8A, lane 8). Moreover, the addition of
the recombinant Ref-1 protein has no effect on the affinity of the
C87S-C14 complex (Fig. 8A, lane
9). Therefore, we can conclude that the substitution of the
Cys87 with a Ser residue confers redox insensitivity to the
TTF-1N-HD protein. It is interesting to note that the C87S-C14 complex
displays a significantly higher mobility with respect to wild type-C14 complex. Moreover, 4-fold more wild-type TTF-1N-HD must be used, in the
EMSA analysis, to have the same protein-DNA complex signal as that
obtained with the C87S mutant. This evidence further suggests an
important role for residue Cys87 in controlling DNA binding
affinity. The EMSA mobility patterns, although suggestive, do not allow
us to exclude the possibility either that the wild type-C14 interaction
occurs with the protein in a dimeric form or that the C87S form is a
truncated form of TTF-1N-HD. To exclude this last
possibility, Western blot analysis was performed on samples of
TTF-1N-HDWT and TTF-1N-HDC87S. SDS-PAGE analysis of the purified
proteins clearly demonstrates the presence of a single species of
TTF-1N-HDC87S showing exactly the same electrophoretic mobility of the
wild type form (Fig. 8B). Moreover, electrospray mass
spectrometric analysis on the sample of TTF-1N-HDC87S confirmed this
evidence (data not shown). To demonstrate the monomeric state of the
wild type-C14 and C87S-C14 complexes, a protein-DNA cross-linking
procedure was utilized. TTF-1N-HDWT and TTF-1N-HDC87S were incubated
with the C14 sequence to allow for the interaction. The mixture was
subjected to UV cross-linking (29), and samples were run onto a 12%
SDS-polyacrylamide gel (Fig. 8C). The free DNA migrates as a
band of about 9 kDa. As expected, due to the monomeric nature of the
TTF-1N-HDWT/DNA interaction, the TTF-1N-HD-DNA complex migrates between
30 and 40 kDa (Fig. 8, lane 2). This result is in agreement with the sum of the molecular masses of the
TTF-1N-HDWT protein, 25 kDa, in addition to a single molecule of the
oligonucleotide C14 (about 9 kDa). These results allow us to conclude
that the TTF-1N-HDWT interacts with the C14 sequence in a monomeric
form. Similarly, the interaction of the C87S mutant is stoichiometric,
since the molecular mass of the complex with the C14 oligonucleotide is
exactly the same as that obtained with the WT (Fig. 8, lane
4).

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Fig. 8.
The Cys87 residue is
responsible for the redox regulation of the DNA binding activity of
TTF-1N-HD. A, EMSA analysis of the TTF-1N-HDC87S
DNA-binding activity. 20 ng of the TTF-1N-HDC87S purified protein were
assayed for DNA binding activity with the 32P-labeled
oligonucleotide C14 (100 fmol) after treatment with 5 mM
diamide (lanes 8 and 9) and with
(lane 9) or without (lane
8) the addition of rRef-1. The specificity of the complex is
tested by incubation with the -His antibody (lane
10) or a preimmune serum (lane 11).
Lanes 2-6 represent the same kind of experiment,
and it was performed with 80 ng of the TTF-1N-HD wild type form. In
each case, at the end of the treatments, oxidized and reduced forms of
the purified proteins were incubated with 100 fmol of
32P-labeled oligonucleotide C14 for 20 min at room
temperature in the presence of competitor DNA (50 µg/ml) and loaded
onto a native polyacrylamide gel for EMSA analysis. Lane 1 represents the oligonucleotide probe alone. B, SDS-PAGE
analysis of the purified TTF-1N-HD WT and TTF-1N-HDC87S recombinant
proteins. The two recombinant proteins, used in the present study,
were expressed in bacteria and purified by nickel/nitrilotriacetic acid
affinity chromatography, as described under "Experimental
Procedures." After purification, proteins were analyzed by 12%
SDS-PAGE and subsequently stained with Coomassie Blue or silver
staining (not shown). In each lane, 3 µg of purified
proteins were loaded. C, UV cross-linking analysis of
TTF-1N-HD WT and TTF-1N-HDC87S recombinant proteins with the
32P-labeled oligonucleotide C14. Protein-DNA cross-linking
analysis was performed as described by Molnar et al. (29)
(see "Experimental Procedures" for details). Analyses were made in
reducing and oxidizing conditions. 80 ng of the purified TTF-1N-HD wild
type form or 20 ng of the purified TTF-1N-HDC87S protein were incubated
with 100 fmol of 32P-labeled oligonucleotide C14 for 20 min
at room temperature, and UV cross-linking was performed. After UV
cross-linking, samples were added with 4× Laemmli sample buffer
with (lanes 1-4) or without -mercaptoethanol
(lanes 5-8). To force the oxidizing conditions,
5 mM diamide was added before incubating in Laemmli sample
buffer (lanes 5-8).
|
|
To exclude the possibility that the retarded band obtained by EMSA
analysis of the WT form could be due to dimerization of the protein
after DNA binding, the UV cross-linking experiment was analyzed in
oxidizing conditions: after treatment of the UV-cross-linked samples
with diamide and following running in SDS-PAGE in oxidizing conditions
without adding
-mercaptoethanol to the Laemmli sample buffer. As is
evident from Fig. 8, lanes 5-8, the protein-DNA complexes show exactly the same molecular masses of that obtained in
reducing conditions (lanes 1-4). Therefore, we
can conclude that the altered mobility obtained by EMSA analysis of the
C87S mutant with respect to the WT protein is due to a different mode of interaction with the DNA, suggesting a major role for residue Cys87 in controlling DNA binding.
 |
DISCUSSION |
Redox regulation of cellular functions is mainly due to ultimate
effects in gene expression. In the last few years, a great body of
experimental evidences suggested that these outcomes are achieved
through modulations of TF activity. Up to now, several TFs, containing
specific Cys residues, have been demonstrated to be the target of redox
regulation. However, in every case, this regulation directly occurs on
the DNA binding domain of these proteins. Only in a recent paper, Morel
and Barouki (34) suggested that also the transactivation domain could
be a target of the redox regulation. Oxidative stress elicits
inhibitory functions toward the NFI/CTF transcriptional ability in the
HepG2 hepatoma cell line, and it is mediated by the redox state of a
Cys residue (Cys-427) present in the transactivation domain of the TF.
Unfortunately, the authors did not provide data regarding the cellular
factors involved in that kind of regulation. Our data add new important insights into the redox control of gene expression. In fact, we demonstrate that Ref-1 also plays a role in the control of the TTF-1
DNA binding activity, through the control of the redox state of a Cys
residue located outside the DNA-binding domain in the transcriptional
activation domain (TAD). We must remember that Ref-1 has already been
demonstrated to control, in a redox-dependent manner, the
DNA binding activity of different important TFs (such as p53, c-Myb,
AP-1, Pax proteins, NF-
B, and members of the ATF/cAMP-response element-binding protein family) by modulating the redox state of the
DNA-binding domain. These interesting outcomes suggest that the redox
control of TTF-1 DNA-binding activity, played at the level of
Cys87, is exerted in an indirect manner. The lowering of
DNA binding activity is obtained through an absolute loss of binding
activity together with a reduction in the ability to specifically
recognize its target among different DNA sequences, with the following
subtraction of protein involved in nonspecific binding. At present, we
do not know if the redox regulation exerts through the control of the
dimeric/oligomeric state of TTF-1 as it had previously suggested (6,
7). Data not shown, demonstrating the presence of a considerable amount
of monomeric form of TTF-1N-HD in oxidizing conditions, would suggest
that the thiol moiety of Cys87 undergoes an oxidation, with
a gain of an oxygen atom, and it possibly generates a sulfonic group.
It is tempting to speculate that the oxidation of Cys87
could affect the conformation of the TAD of TTF-1 so as to alter the
DNA binding activity of the HD. Up to now, there is no evidence regarding a possible structural role of the TAD over the TTF-1 HD.
However, we cannot exclude a possible TAD involvement in controlling some structural requirements of the HD itself, which are necessary for
high specific DNA binding activity. Otherwise, the N domain could be
able to transiently contact DNA in a manner to correctly position the
HD domain for a productive recognition of the C site. This hypothesis
could explain the different footprints on the C site of the Tg
promoter, obtained when the whole TTF-1 molecule is assayed with
respect to the HD alone (35). In this regard, the altered mobility
obtained in the case of the complex between the C87S mutant and the
oligonucleotide C14 would be suggestive of a role of the
Cys87 residue in controlling the DNA-binding properties of
the HD.
An additional level of control, played over the transcriptional
activity of TTF-1, by the redox status of Cys87 could be
due to the intrinsic properties of the N transactivation domain as a
classical transcriptional activation domain. The oxidation of
Cys87 could affect the conformation of the N domain,
preventing the productive protein-protein interactions with the
transcriptional apparatus, which are required for the transcriptional
activation. In this regard, it should be noted that the TTF-1 N domain
exerts its activities by binding to the TATA-box-binding protein TBP (6). Therefore, together with an effect on the DNA-binding specificity,
the redox status of the Cys87 could also play an important
role in the control of the transcriptional activity of TTF-1 by
modulating the recruitment of TBP.
As has been previously demonstrated for Pax-8 and now for TTF-1, the
redox control in the thyroid cell model seems to be of primary
importance in regulating cell type-specific gene expression. In fact,
it is largely known that TSH exerts its functions in the thyroid
cell through many different mechanisms: from activation through cAMP
signaling cascades to production of large amounts of
H2O2 (15, 16) that represents, in light of
several recent studies, a bona fide second messenger in the
cell (36). It is largely known that thyroid cells are constantly
exposed to reactive oxygen species because they produce a large amount
of H2O2 in response to TSH for the synthesis of
thyroid hormone (37, 38). We and other researchers have recently
demonstrated that the cellular redox status controls the levels and
subcellular localization of Ref-1 (13, 20). In particular, in FRTL-5
cells, TSH is able to control Ref-1 by two major mechanisms involving
neosynthesis (late times) and cytoplasm to nucleus translocation of the
protein (early times) (14). Therefore, we suggest that Ref-1 plays a central role as a regulator of thyroid-specific gene expression in
response to physiological stimuli. Interestingly, the same stimuli
elicited by TSH (i.e. H2O2 and cAMP
production) are able to strongly control the expression level and the
subcellular localization of Ref-1 (14, 39).
In conclusion, our data support two major ideas. First, a
Ref-1-mediated mechanism may constitute a major switch to the control of thyroid cells. In fact, Ref-1 is controlled by TSH, and, in turn, it
modulates both Pax-8 and TTF-1 functions. Second, the DNA-binding
function of the TTF-1 HD is controlled by redox regulation occurring
outside of it. Therefore, it is possible to argue that the N
transcriptional activation domain acts not only as a classical transactivator, involved in contacting proteins of the transcriptional machinery apparatus but could possibly modulate a structural transition of the HD required for an optimal DNA-binding specificity by TTF-1. Further studies are required to investigate such a hypothesis by more
sophisticated structural techniques such as NMR or x-ray crystallography.
 |
ACKNOWLEDGEMENTS |
We thank R. Acquaviva for help with TTF-1N-HD
purification, S. Formisano for a gift of anti-TTF-1 polyclonal
antibody, Tom Curran for the CMV-Ref-1 and His-tagged-Ref-1 plasmids,
and Cristiana Campa for the mass analysis of the recombinant proteins
used in this study. The help of E. Tell during manuscript preparation is greatly appreciated. This work was performed within the Center of
Excellence of Biocrystallography at the University of Trieste.
 |
FOOTNOTES |
*
This work was supported by grant "Progetto Giovani
Ricercatori 2000" from the University of Trieste (to G. T.) and by
grants from the Consiglio Nazionale delle Ricerche (Target Project on Biotechnology) and from MURST (to G. D.). The costs of this
publication of this article were defrayed in part by the payment of
page charges. This article must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
To whom correspondence should be addressed. Tel.: 39-040- 6763678;
Fax: 39-040-6763691; E-mail: tell@bbcm.univ.trieste.it.
Published, JBC Papers in Press, February 7, 2002, DOI 10.1074/jbc.M200582200
 |
ABBREVIATIONS |
The abbreviations used are:
TTF-1, thyroid
transcription factor 1;
Tg, thyroglobulin;
TSH, thyrotropin;
Ref-1, redox effector factor 1;
rRef-1, recombinant Ref-1;
EMSA, electrophoretic mobility shift assay;
HD, homeodomain;
TF, transcription factor;
TAD, transactivation domain;
HIF, hypoxia-inducible factor;
CMV, cytomegalovirus;
CAT, chloramphenicol
acetyltransferase;
GST, glutathione S-transferase;
DTT, dithiothreitol.
 |
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Copyright © 2002 by The American Society for Biochemistry and Molecular Biology, Inc.

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G.-M. Zou, M.-H. Luo, A. Reed, M. R. Kelley, and M. C. Yoder
Ape1 regulates hematopoietic differentiation of embryonic stem cells through its redox functional domain
Blood,
March 1, 2007;
109(5):
1917 - 1922.
[Abstract]
[Full Text]
[PDF]
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Y. Maeda, V. Dave, and J. A. Whitsett
Transcriptional Control of Lung Morphogenesis
Physiol Rev,
January 1, 2007;
87(1):
219 - 244.
[Abstract]
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