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J. Biol. Chem., Vol. 277, Issue 18, 15566-15572, May 3, 2002
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From the Boehringer Ingelheim Pharma KG,
Received for publication, February 7, 2002
Telomerase, a ribonucleoprotein acting
as a reverse transcriptase, has been identified as a target for cancer
drug discovery. The synthetic, non-nucleosidic compound, BIBR1532, is a
potent and selective telomerase inhibitor capable of inducing
senescence in human cancer cells (1). In the present study, the mode of drug action was characterized. BIBR1532 inhibits the native and recombinant human telomerase, comprising the human telomerase reverse
transcriptase and human telomerase RNA components, with similar
potency primarily by interfering with the processivity of the enzyme.
Enzyme-kinetic experiments show that BIBR1532 is a mixed-type
non-competitive inhibitor and suggest a drug binding site distinct from
the sites for deoxyribonucleotides and the DNA primer, respectively.
Thus, BIBR1532 defines a novel class of telomerase inhibitor with
mechanistic similarities to non-nucleosidic inhibitors of HIV1 reverse transcriptase.
The reactivation of telomerase is a key requisite
for human cancer cells to attain an unlimited proliferation potential
and is regarded as an essential alteration in the physiology of the tumor cell to acquire malignant growth. (2-5). The underlying concept,
namely telomere maintenance by telomerase, has been demonstrated for
85-90% of human cancer specimens from a large range of different cancer types (6). Constitutive overexpression of the enzyme in various
presenescent and normal cells conveyed an unlimited growth potential
onto these cells (3), confirming further the role of telomerase in the
immortalization process. In contrast, inhibition of telomerase results
in telomere-shortening, subsequent growth arrest, and senescence in a
wide range of tumor cell lines. This has been demonstrated by
expressing a dominant-negative form of telomerase in immortal tumor
cell lines (7, 8) and, pharmacologically, by the use of the small
molecule telomerase inhibitor, BIBR1532 (1). These data underscore that
telomerase may represent a valuable target for novel antitumor therapies.
Telomerase is a ribonucleoprotein that acts as a reverse
transcriptase (RT)1 by using
a small region of its RNA subunit, hTR, as a template for the synthesis
of telomeric DNA (9-11). Reverse transcription itself is catalyzed by
the telomerase protein subunit, hTERT. Since catalytically active
telomerase has been assembled from recombinant hTERT protein and
in vitro transcribed hTR (12, 13), these subunits are
regarded as the telomerase core enzyme. In vivo, however,
human telomerase exists as a high molecular weight complex with an
estimated molecular mass of 1000 KDa (14-17). This large size may be
due to the multimeric nature of human telomerase and the association of
the telomerase core components, hTERT and hTR, with several
telomerase-associated proteins. These diverse proteins may play an
important role in telomerase biogenesis, regulation and stability, or
may modulate the interaction with telomeres in vivo;
however, they are not considered to exert a direct function in
catalysis (12, 13, 18).
In vitro telomerase is able to elongate a short
single-stranded DNA in a processive manner by adding multiple TTAGGG
repeats to the 3'-end of a suitable DNA primer. Since the enzyme
appears to pause after synthesis of each set of six nucleotides
representing a single telomeric repeat, a typical pattern of product
bands spaced at six-nucleotide intervals is observed. Once the 5'
boundary of the template is copied the DNA substrate is thought to
either translocate during processive synthesis, or it may dissociate from the enzyme. Thus, to allow addition of multiple telomeric repeats,
translocation and re-initiation must take place after each cycle of
template copying. The mechanisms involved are not elucidated yet, but a
critical factor could be the dimeric nature of human telomerase with
two hTERT and two hTR molecules present per functional telomerase
complex (19, 20).
Because of the structural and mechanistic similarity between hTERT and
reverse transcriptases, it has been hypothesized that known reverse
transcriptase inhibitors may potently inhibit human telomerase. HIV1-RT
has been successfully inhibited by nucleoside analogs, which bind to
the dNTP binding site (21) and by non-nucleoside inhibitors (NNRTI),
which bind to a hydrophobic pocket near the catalytic center resulting
in a distortion of the active site (22-24). However, all NNRTI and
nucleoside analog inhibitors of HIV1-RT tested were found to be
inactive or to exhibit only weak inhibitory activity toward human
telomerase (25-27), suggesting that structural differences between
these two families of reverse transcriptases are sufficient to allow
specificity of the inhibitors. Additional strategies for inhibition of
telomerase have been explored, including antisense approaches directed
against hTR (28, 29), compounds targeting telomeric DNA (30, 31), and
small molecule drugs (32).
In the present study, we present the initial characterization of the
mode of telomerase inhibition by BIBR1532, a synthetic small molecule
inhibitor of human telomerase (1).
Deoxyribonucleotides were from Amersham Biosciences.
1,4-Dithiothreitol was from Roche Diagnostics, and phenylmethylsulfonyl fluoride was from Invitrogen. [ Preparation of Telomerase-enriched Extracts--
Crude HeLa
nuclear extracts (Computer Cell Culture Center, Seneffe,
Belgium) were enriched for telomerase activity with a one-step
chromatography on Q-Sepharose column (HiTrap Q HP, Amersham Biosciences). The buffer used was 20 mM Tris-Cl (pH 8.0),
100 µM EGTA, 100 µM EDTA, 1 mM
MgCl2, 10% (w/v) glycerol, complemented with different
concentrations of KCl (BCE100, 100 mM; BCE250, 250 mM; BCE500, 500 mM; BCE1000, 1 M).
The 1-ml column was equilibrated in BCE100 buffer. The following steps
were carried at 4 °C. 2 mg of HeLa nuclear extract was diluted in a
large volume of BCE100 and loaded twice on the column at 0.5 ml/min.
The column was washed at 0.5 ml/min with 4 volumes of BCE100 and 3 volumes of BCE250. Most of the proteins were eluted by washing with 4 volumes of BCE500. Telomerase activity was collected as 1-ml fractions
by elution with 10 volumes of BCE1000 and dialyzed against BCE100 containing 500 µM 1,4-dithiothreitol and 250 µM phenylmethylsulfonyl fluoride. The fractions were
analyzed for their protein content with a Bradford assay and for
telomerase activity in the TRAP assay (33).
Reconstitution of Active Recombinant Telomerase--
Telomerase
activity was reconstituted with hTERT expressed in insect cells and
in vitro transcribed hTR. Recombinant His-tagged hTERT
associated with hTR was purified as described previously via specific
affinity chromatography with an oligonucleotide directed against the
hTR sequence (19).
Conventional Telomerase Assay--
For the direct telomerase
assay with the endogenous telomerase, 10 µl of telomerase-enriched
extract was mixed with different concentrations of BIBR1532 in a final
volume of 20 µl. After 15-min preincubation on ice, 20 µl of the
2× reaction mixture was added, and the reaction was initiated by
transferring the tubes to 37 °C. The final concentrations in the
reaction mixture were 25 mM Tris-Cl (pH 8.3), 1 mM MgCl2, 1 mM EGTA, 1 mM dATP, 1 mM dTTP, 6.3 µM cold
dGTP, 15 µCi [ TRAP Assay--
The TRAP was performed as described
previously (17, 33). In this assay BIBR1532 has no inhibitory
effect when added after the telomerase reaction. Unless indicated, the
dNTPs were each present at 80 µM and the oligonucleotide
primer at 700 nM. The telomerase fraction and BIBR1532 were
preincubated for 15 min on ice in reaction buffer. After addition of
different concentrations of the variable reactant, the reaction was
initiated by incubation at 23 °C for 3-6 min, stopped by heating at
90 °C for 90 s, and kept on ice. Before proceeding with the PCR
reaction, the variable reactant was adjusted to a final concentration
of 80 µM for each dNTP and 700 nM for the DNA
primer. The PCR mix was added, and PCR was performed for 27 cycles (30 min at 94 °C, 30 min at 50 °C, 90 min at
72 °C). The amount of radiolabeled products was either quantified by
liquid scintillation counting after precipitation with 5%
trichloroacetic acid or on a PhosphorImager after
fractionation on a 6% acrylamide/bisacrylamide gel.
Determination of Kinetic Constants--
To determine the kinetic
constants of BIBR1532 inhibition, TRAP assays were carried out in
triplicate in the presence of varying concentrations of substrate and
inhibitor. Reactions were performed at linear conditions, and the
results of three assays were used for further calculations. The
reaction products were precipitated with 5% trichloroacetic acid,
collected on glass fiber filters (Millipore), and the amount of
incorporated radioactivity was determined by liquid scintillation
counting. For velocity plots, the incorporated radioactivity (in
counts/min) was blotted against the variable substrate.
Km values were calculated as the concentration of
variable substrate required to reach 1/2 Vmax. The inhibition constants were determined
from secondary plots (Lineweaver and Burk). Ki and
BIBR1532 Is an Inhibitor of Cellular and Recombinant
Telomerase--
BIBR1532 has been identified as a potent and selective
inhibitor of human telomerase (1). To obtain a better understanding of
the mechanism of action exerted by this compound, the mode of
telomerase inhibition was adressed in further detail using both native
enzyme enriched from HeLa cell nuclear extract as well as recombinant
enzyme reconstituted from recombinant hTERT and in vitro
transcribed hTR. The effect of BIBR1532 on telomerase activity was
analyzed using two published assay methods, a conventional assay (11)
relying on a direct measurement of enzyme activity and the PCR-based
TRAP assay (33), which includes an amplification step. A shown in Fig.
1A, the native enzyme
synthesized long extension products in the conventional assay
(lane 1). Increasing concentrations of BIBR1532 inhibit this
process in a dose-dependent manner (lanes 2-5).
Calculation of the total signal intensity by PhosphoImager analysis revealed a IC50 value of ~100 nM.
Noticeably, at low concentrations of the inhibitor, the synthesis of
long extension products appears to be more affected than the synthesis
of shorter products (lanes 1-3). Inhibition of telomerase
activity is also observed in a TRAP assay (Fig. 1B,
lanes 1-7). Consistent with the result of the conventional
primer extension assay, the synthesis of longer products is
preferentially inhibited at low concentrations of BIBR1532 (lanes
2-7). To allow a quantification, the intensity of individual
extension products was analyzed by PhosphoImaging, and
dose-response curves were generated for each product. As shown in Fig.
1C, the IC50 value for the shortest product
(band 1), which corresponds to the two first cycles of template
copying, is ~750 nM. The formation of the two longest
products analyzed (bands 11 and 15) is inhibited with IC50
values of 150 nM and 100 nM, respectively.
To determine whether BIBR1532 would directly act on the telomerase
hTERT-hTR core enzyme, active telomerase was reconstituted by
incubating insect cell lysate containing recombinant hTERT with
in vitro transcribed hTR. Reconstituted telomerase
ribonucleoproteins were purified by RNA affinity chromatography, and
the eluted enzyme was tested in the conventional primer extension
assay. As shown in Fig. 2A,
the purified reconstituted enzyme catalyzed the formation of the
specific hexanucleotide repeat ladder characteristic for human
telomerase (lane 1) with the most prominent product bands corresponding to the first four cycles of template copying. Also this
recombinant telomerase was inhibited by BIBR1532 (lanes
4-9). As seen for the native enzyme, the formation of longer
products is affected stronger than the formation of the shorter ones
(Fig. 2B). The bottom band, which corresponds to
the first cycle of template copying (+4), is only weakly inhibited at
concentrations of BIBR1532 below 1 µM, whereas the
formation of the +16 and +22 products, corresponding to three and four
cycles of template copying, respectively, is inhibited with
IC50 values of ~100 nM. Interestingly, even
in the presence of high concentrations of BIBR1532, no chain termination events (e.g. the appearance of new intermediate
products) were observed. Thus, BIBR1532 does not inhibit the catalytic
steps during a single round of template copying.
BIBR1532 Is a Mixed-type Non-competitive Inhibitor of Human
Telomerase--
To characterize the mode of inhibition by BIBR1532 as
a function of the four substrates required for telomerase activity
in vitro, namely, dATP, TTP, dGTP, and a DNA primer, a
series of enzyme kinetic experiments were performed. The conditions for the linear phase of primer elongation were determined in an initial experiment in the presence of saturating substrate concentrations and
variable amounts of partially purified native telomerase. As shown in
Fig. 3A, a linear correlation
between reaction time, enzyme concentration, and the generation of
telomerase products was observed for incubations below 10 min.
Therefore, for the subsequent experiments reaction times between 4 and
6 min were used, and velocity curves were determined for different
substrate concentrations in the presence or absence of BIBR1532. As
shown in Fig. 3B, a hyperbolic curve was obtained when
telomerase activity was plotted as a function of the DNA primer
concentration in the absence of the inhibitor (open
circles). The maximum enzymatic reaction
(Vmax) was reached with primer concentrations
above 150 nM. In the presence of increasing amounts of
BIBR1532, a clear reduction in Vmax was
observed, a feature characteristic for a non-competitive inhibition. At
the highest inhibitor concentration tested (1 µM),
Vmax was decreased by 60%. The data were used
to calculate the Michaelis-Menten constant of the DNA primer in the absence (Km) and in the presence of BIBR1532
(
The velocity curves and the resulting double-reciprocal plots
(Lineweaver-Burk diagrams) were determined for each of the three deoxyribonucleotides in the presence or absence of BIBR1532 (Figs. 4 and 5,
A-C, respectively). As shown in Fig. 4, A-C,
for each of the three dNTPs a pronounced decrease in
Vmax was observed in the presence of BIBR1532,
indicating a non-competitive mode of inhibition for the
deoxyribonucleotides also. The Michaelis-Menten constants for each
of the three dNTPs increased in the presence of the inhibitor (Fig.
4D). At 1 µM BIBR1532, the
Km values for dATP (5 µM), TTP (7 µM), and dGTP (14 µM) increased to 11, 14, and 23 µM, respectively (
The concomitant increase in the value for the affinity constant and a
decrease in Vmax suggests a mixed-type
inhibition, with different binding sites for the substrate(s) and the
inhibitor, but with strong influence between the binding of each other
(34).
The definition of the precise mechanism of enzyme inhibition, by
pharmaceutically relevant small molecule drug candidates, is of
considerable interest as shown for the HIV drugs (22, 23).
In this study we show that BIBR1532 targets directly telomerase core
components as telomerase reconstituted from hTR and recombinant hTERT
is inhibited by BIBR1532 with potencies comparable with the native
enzyme derived from tumor cells. In addition, BIBR1532 exhibits a
non-competitive mode of inhibition, which is clearly distinct from the
inhibition described using nucleosidic compounds or antisense
oligonucleotides. Both for the native and the recombinant enzyme our
data show that BIBR1532 does not cause chain termination events but
rather inhibits the formation of long reaction products. In particular,
the inhibitor leads to an overall reduction in the number of added
TTAGGG repeats; the periodicity of six nucleotides, however, is
conserved. This suggests that BIBR1532 does not block the basic
catalytic steps involved in template copying but specifically impairs
the elongation of the DNA substrate after its extension to the 5'-end
of the template. Thus, BIBR1532 may affect translocation of the enzyme
DNA substrate complex or may promote dissociation between DNA substrate
and the enzyme upon completion of template copying. As these steps are
most likely unique to telomerase, this may explain the high selectivity
of the compound.
In a more detailed analysis the specific kinetic parameters of
inhibition by BIBR1532 were determined. We detected only a slight
inhibition of the binding of the DNA primer in the presence of
BIBR1532. However, BIBR1532 reduced more than 2-fold the affinity for
dNTPs. Conversely, binding of deoxyribonucleotides decreased the
affinity of the enzyme for BIBR1532. This inhibition profile corresponds to a mixed-type non-competitive inhibition, in which the
enzyme has different, but functionally interdependent, binding sites
for deoxyribonucleotides and BIBR1532. Two hypotheses may explain such
an interference. First, the binding of the substrate or the drug
induces a conformational change of the enzyme structure interfering
with the binding of the other molecule. Second, the binding site of the
drug and the binding site of the deoxyribonucleotides are in close
proximity or overlap, creating therefore a steric reciprocal
interference for the binding efficiency. The biochemical data described
above do not support an allosteric inhibition profile, and thus we
favor the latter hypothesis.
Compared with telomerase considerable more details on enzyme structure
and function are known about HIV1 reverse transcriptase. The
three-dimensional structure of this enzyme is often described as a
right hand naming the subdomains as fingers, palm, and thumb, with the
catalytic center being located within the palm subdomain (23). All
three subdomains are important determinants for HIV1-RT processivity.
The non-nucleosidic drug nevirapine inhibits preferentially the
translocation step of polymerization (22). Co-crystallization experiments revealed that nevirapine binds into a deep
hydrophobic pocket between the palm and the base of the thumb (the
"primer grip") close to, but not overlapping, with the DNA binding
site (23). Binding of the drug may either induce repositioning of the
catalytic aspartic acids or may prevent conformational changes required
to complete the catalytic cycle. Although the primary sequence
similarity between telomerase and HIV1 reverse transcriptase is low,
key features in structure and basic mechanism of catalysis appear
similar. For example, it has been shown that point mutations in amino
acids that are conserved between TERTs and retroviral reverse
transcriptases reduced or abolished activity in both types of enzymes
or had similar effects on processivity (13, 35-39). Recently, a
detailed mutational analysis undertaken to study the processivity of
yeast TERT primer grip and thumb subdomain suggested that telomerase,
as its retroviral cousin, may contain hydrophobic pockets between the
palm and thumb, which also might be available for binding of small
molecule inhibitors (39, 40).
Therefore, the apparent similarities in the mechanism of action of
nevirapine on HIV1 reverse transcriptase and BIBR1532 on human
telomerase together with the structural and mechanistic similarities of
both enzymes are intriguing. However, a detailed understanding of the
molecular basis of BIBR1532 inhibition will require the crystal
structure analysis of the telomerase-inhibitor complex. For HIV1-RT a
cooperative inhibitory effect has been observed when nevirapine
and nucleosidic analogs were used concomitantly (22). Therefore, it
will be of interest to determine whether inhibition of telomerase by
BIBR1532 is potentiated when combined with nucleotide analogs in
biochemical in vitro assays. Such cooperativity would
increase interest in the discovery of nucleosidic telomerase inhibitors.
We thank the members of the Department of
Oncology Research for helpful discussions and encouragement. The expert
technical assistance of Bernd Guilliard is acknowledged.
*
This work was supported in part by the Swiss National
Science Foundation and the Fifth Framework Program of the European
Commission (administered by the Bundesamt fuer Bildung und
Wissenschaft, Bern, Switzerland) (to J. L.).The costs of publication of this article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
**
To whom correspondence should be addressed. Tel.: 49- 7351-54-5240; E-mail:
andreas.schnapp@bc.boehringer-ingelheim.com.
Published, JBC Papers in Press, February 19, 2002, DOI 10.1074/jbc.M201266200
The abbreviations used are:
RT, reverse
transcriptase;
hTERT, human telomerase reverse transcriptase;
hTR, human telomerase RNA;
HIV, human immunodeficiency virus;
BIBR1532, 2-((E)-3-naphthalen-2-yl-but-2-enoylamino)-benzoic
acid;
TRAP, telomeric repeat amplification protocol.
Mechanism of Human Telomerase Inhibition by BIBR1532, a
Synthetic, Non-nucleosidic Drug Candidate*
,
,
,
, and
**
Department
of Oncology Research and ¶ Department of Medicinal Chemistry,
Birkendorfer Strasse 65, 88397 Biberach, Germany, the
§ Swiss Institute for Experimental Cancer Research (ISREC),
CH-1066 Epalinges, Switzerland, and
Boehringer Ingelheim Austria
GmbH, Dr. Boehringer Gasse 5-11, A-1120 Vienna, Austria
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ABSTRACT
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
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INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
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MATERIALS AND METHODS
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
-33P]dCTP (1 mCi/100 µl) was purchased from Hartmann Analytic. The PCR primer
forward (tea-fw: 5'-CAT ACT GGC GAC CAG AGT T-3') and reverse (tea-rev:
5'-GGC GCG CCC TTA CCC TTA CCC TTA CCC TAA-3') were from Carl Roth GmbH.
-32P]dGTP (3000 Ci/mmol; NEN), 1.25 mM spermidine, 10 units of RNasin, 5 mM
2-mercaptoethanol, and 2.5 µM TS-primer
(5'-AATCCGTCGAGCAGAGTT, Pharmacia Biosciences). For the recombinant
enzyme, 1-7 µl of affinity-purified telomerase (containing less than
0.025 µM hTERT) were assayed in a final volume of 40 µl
containing 50 mM Tris acetate (pH 8.5), 50 mM
KCl, 1 mM MgCl2, 1 mM spermidine, 5 mM 2-mercaptoethanol, 1 mM dATP, 1 mM dTTP, 2.5 µM dGTP, 15 µCi of [
-32P]dGTP (3000 Ci/mmol, Amersham Biosciences) and
2.5 µM (TTAGGG)3. The reaction was initiated
by incubation at 37 °C for 2 h and stopped by addition of 50 µl of RNase mix (0.1 mg/ml RNaseA (Roche Applied
Science)-100 u/ml RNaseT1 (Roche Applied Science) in
10 mM Tris-Cl (pH 8.3) and 20 mM EDTA) and
incubation for 20 min at 37 °C. Samples were deproteinated by adding
50 µl of 0.3 mg/ml proteinase K (Roche Applied Science) in 10 mM Tris-Cl (pH 8.3) and 0.5% w/v SDS, for a 30-min
incubation at 37 °C. DNA was recovered by phenol extraction and
ethanol precipitation, and the extension products were analyzed on an
8% (endogenous telomerase) or 12% (recombinant telomerase)
polyacrylamide-urea gel. Dried gels were exposed to a Kodak
phosphorimager screen, and the results were analyzed via a Storm
PhosphorImager (Molecular Dynamics).
Ki correspond to the x-intercept of
the linear replots slope = f(I) and
y-intercept = f(I), respectively.
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RESULTS
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ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES

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Fig. 1.
BIBR1532 inhibits preferentially the
processivity of human telomerase. The inhibition of human
telomerase partially purified from HeLa nuclear extract was tested in a
direct telomerase assay (A) or a PCR-based TRAP assay
(B) as described under "Material and Methods." The
arrows indicate the product bands used for quantification.
C, the intensities of TRAP products referred to as band 1 (closed circles), band 5 (open circles), band 7 (filled triangles), band 9 (open triangles), band
11 (filled squares), and band 15 (open squares)
were normalized to the intensities of the corresponding products in the
control without inhibitor and plotted against the concentration of
BIBR1532.

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Fig. 2.
BIBR1532 inhibits recombinant
telomerase. A, direct telomerase assay. Telomerase was
reconstituted with insect cell expressed hTERT and in vitro
transcribed telomerase RNA, affinity-purified, and incubated with
(TTAGGG)3, dATP, dTTP, and [
-32P]dGTP with
or without BIBR1532. Telomerase products were separated on a sequencing
gel. The inhibitor was diluted in dimethyl sulfoxide and added
to the reaction mix prior to the addition of telomerase. The gel shows
a control without dimethyl sulfoxide (lane 1), a control
with dimethyl sulfoxide only (lane 3), reactions in the
presence of different concentrations of inhibitor (lanes
4-9) and (TTAGGG)3 labeled with terminal transferase
and [
-32P]ddATP (lane 2). B, the
intensities of telomerase products extendend by 4 (+4,
diamonds), 10 (+10, squares), 16 (+16, circles), and 22 nucleotides
(+22, triangles) were normalized to the
intensities of the corresponding products in the control without
inhibitor and plotted against the concentration of BIBR1532.
Km) and to calculate the binding constants of
the inhibitor in the absence (Ki) and in the
presence (
Ki) of the DNA primer. As shown in Fig.
3C, the Km and
Km values for the DNA primer were not
significantly different, suggesting that BIBR1532 does not affect the
binding of the DNA primer to the enzyme. However, a small, but
significant, increase of
Ki (750 nM)
over Ki (500 nM) was observed (Fig.
3D), indicating a slightly higher affinity of BIBR1532 to
the free enzyme than to the enzyme-DNA primer complex.

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Fig. 3.
BIBR1532 is a non-competitive inhibitor for
the binding of the DNA primer. A, kinetic analysis of
human telomerase in a TRAP assay. Telomerase reactions were performed
with different quantities of partially purified telomerase as described
under "Materials and Methods:" 4.5 ng (open circles), 9 ng (filled circles), 18 ng (open triangles), 45 ng (filled triangles), or 90 ng (filled squares)
of total protein. Reactions were stopped after various time points, and
products were analyzed as described. Telomerase activity (in
counts/min) was plotted against the reaction time. B, direct
plot of telomerase activity (18 ng of protein, 6-min reaction time)
versus the concentration of DNA primer (nM) in
the absence or presence of different concentrations of BIBR1532: no
BIBR1532 (open circles), 200 nM (filled
circles), 500 nM (filled triangles), or 1 µM BIBR1532 (filled diamonds). C,
Michaelis-Menten constants of the DNA primer in the absence
(Km) or in the presence (
Km)
of 1 µM BIBR1532. D, affinity constants of
BIBR1532 in the absence (Ki) or in the presence
(
Ki) of DNA primer.
Km, Fig.
4D), suggesting for each dNTP a lower affinity to the
telomerase-BIBR1532 complex. The affinity constants of BIBR1532 were
calculated to be 250-300 nM for the nucleotide-free enzyme
(Ki, Fig. 5D) and 600-800 nM
for a telomerase-dNTP complex (
Ki,
Fig. 5D). This indicates a tight binding of the drug to the
nucleotide-free enzyme and a 2-3-fold lower affinity to each
enzyme-dNTP complex. In the corresponding Lineweaver-Burk plots
these conditions resulted in the intersection of the control (no
inhibitor) and the "plus inhibitor" curves above the
1/[S]-axis, since
Ki was larger than
Ki (Fig. 5, A-C).

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Fig. 4.
BIBR1532 is a mixed-type non-competitive
inhibitor for the binding of dNTP. A-C, telomerase
reactions were performed for 6 min with 18 ng of partially purified
telomerase as described under "Materials and Methods" in the
presence of variable concentrations of dGTP (A), TTP
(B), dATP (C), and BIBR1532. Open
circles, no BIBR1532; filled circles, 200 nM; filled triangles, 500 nM;
filled squares, 1 µM. Telomerase activity (in
counts/min) is plotted versus dGTP (A), TTP
(B), and dATP (C) for different concentrations of
BIBR1532. D, Michaelis-Menten constants of the
deoxyribonucleotides in the absence (Km) or in the
presence (
Km) of 1 µM
BIBR1532.

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Fig. 5.
BIBR1532 is a mixed-type non-competitive
inhibitor for the binding of dNTP. A-C,
double-reciprocal plot (Lineweaver-Burk) of velocity curves shown in
Fig. 4, A-C. D, affinity constants of BIBR1532
in the absence (Ki) or the presence
(
Ki) of the variable deoxyribonucleotide (80 µM).
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DISCUSSION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
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ACKNOWLEDGEMENTS
![]()
FOOTNOTES
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ABBREVIATIONS
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REFERENCES
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
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