Originally published In Press as doi:10.1074/jbc.M200833200 on February 22, 2002
J. Biol. Chem., Vol. 277, Issue 19, 16512-16516, May 10, 2002
Unfolding and Double-stranded DNA Binding of the Cold
Shock Protein Homologue Cla h 8 from Cladosporium
herbarum*
S. Fabio
Falsone
,
Michael
Weichel§,
Reto
Crameri§,
Michael
Breitenbach¶, and
Andreas J.
Kungl
From the
Department of Protein Chemistry and
Biophysics, Institute of Pharmaceutical Chemistry and Pharmaceutical
Technology, University of Graz, A-8010 Graz, Austria, the
§ Swiss Institute of Allergy and Asthma Research (SIAF),
CH-7270 Davos, Switzerland, and the ¶ Institute of Genetics and
General Biology, University of Salzburg, A-5020 Salzburg,
Austria
Received for publication, January 25, 2002
 |
ABSTRACT |
The cloning, purification, and biophysical
characterization of the first eukaryotic cold shock protein homologue,
Cla h 8, expressed as single functional polypeptide is reported here.
It was discovered as a minor allergen of the mold Cladosporium
herbarum by phage display using a library selectively enriched
for IgE-binding proteins. Based on the sequence homology of Cla h 8 with bacterial cold shock proteins (CSPs), a homology-based computer
model of the allergen was computed indicating an all-
structure of
Cla h 8. This major structural feature was confirmed by CD
spectroscopy. Despite the structural similarities with bacterial CSPs,
the DNA-binding and unfolding behavior of Cla h 8 exhibited unique and
previously undescribed characteristics. High affinities of Cla h 8 for
single-stranded DNA as well as for double-stranded DNA
corresponding to the human Y-box were detected. The affinity for
double-stranded DNA increased significantly with decreasing
temperature, which was paralleled by an increase in the
sheet
content of the protein. Temperature-dependent fluorescence
anisotropy and far-UV CD measurements revealed different unfolding
transitions at 28 and at 35.7 °C, respectively, indicating a
multistate transition, which is uncommon for CSPs. The enhanced affinity for DNA at low temperatures together with the low unfolding transition refer to the functional significance of Cla h 8 at reduced temperatures.
 |
INTRODUCTION |
Cold shock proteins (CSPs)1
are a class of small proteins which occur in a variety of prokaryotic
organisms like mesophilic, psychrotrophic, and thermophilic bacteria
(1, 2). Structurally, they belong to the
oligonucleotide/oligosaccharide binding-fold family (3), which comprise
a five-stranded
-barrel-fold and contain the highly conserved
ribonucleoprotein consensus sequences RNP1 and RNP2 (4-8). Exposed
aromatic residues on these motifs are crucial not only for nucleotide
binding but also for stability and folding of CSPs (9-12). Initially,
it was thought that prokaryotic CSPs bind preferentially to the
single-stranded ATTGG Y-box motif, in analogy to Y-box-binding proteins
(Yb proteins) (7, 13-15), but in recent work it has turned out that
binding to ssDNA templates is not limited to just this sequence, and
that it depends on the T-base composition of the strand (16-18).
CspA from Escherichia coli, the first known member of this
protein class, was shown to be dramatically overproduced at low temperature stress (19, 20), and thus the entire protein family was
attributed a cold shock regulatory function (1, 2). CspA acts as an RNA
chaperone (21) in the course of translational control at decreased
temperatures, binding nonspecifically to RNA in order to prevent the
formation of secondary structure and thereby enabling efficient
initiation of translation. Further, it regulates the synthesis of other
cold stress-inducible proteins through transcription antitermination
(22). However, evidence has arisen that the physiological roles of cold
shock proteins are not limited to responses at low temperatures (1, 2). Many of them are expressed under physiological (growth) conditions, and
it has been recently demonstrated that the production of CspA is also
induced at 37 °C upon nutritional upshifts (23).
In eukaryotes, cold shock proteins are present as functional domains of
Yb proteins (24). They were first reported to bind to the inverted
CCAAT box (Y-box) of the major histocompatibility complex class
II promoter sequence (13). Yb proteins consist of a glycine-rich
N-terminal domain with unknown function, a nucleic-acid binding (cold
shock) domain, and a C-terminal domain responsible for dimerization
(27). They are multifunctional regulators of gene expression, and they
are presumed to couple transcription to translation of mRNA (24,
25). In addition to their binding of RNA, Yb proteins were shown to be
able to interact with double-stranded DNA (14, 26, 27), while bacterial
CSPs were found to interact only with single-stranded but not with
double-stranded DNA (4, 15, 17).
Here we report the biophysical characteristics of the first eukaryotic
cold shock protein, which was found to be independently expressed as
functional polypeptide and not as part of a Yb protein. The cold shock
protein homologue was named Cla h 8 and is a minor allergen of
Cladosporium herbarum (28). Allergic reactions to this mold
lead to rhinitis, conjunctivitis, and allergic asthma. Although Cla h 8 shows high homology to bacterial cold shock proteins, it was found to
display some previously unobserved characteristics especially with
respect to DNA binding. It was shown to unfold at temperatures
uncommonly low for CSPs, which is interpreted to correlate with the
improved affinity of Cla h 8 for dsDNA at low temperatures referring to
the functional significance of Cla h 8 at reduced temperatures.
 |
MATERIALS AND METHODS |
Construction and Screening of a C. herbarum cDNA Library
Displayed on Phage Surface--
For the construction of a C. herbarum cDNA library, 4 µg of a modified pJuFo vector (29)
was digested with EcoRI and XhoI and subsequently
treated with calf intestine phosphatase (30). 2 µg of C. herbarum cDNA inserts, prepared from a previously constructed
-Zap expression library (28) by EcoRI and XhoI
digestion of isolated pBlueScript phagemid DNA excised
in vivo (31), was ligated into the cleaved vector. The
ligation mixture was used to transform E. coli XL1-Blue
cells by electroporation, and an M13 phage surface expression library
was generated by helper phage superinfection as previously described
(32). The library was selectively enriched for phage displaying
IgE-binding proteins by biopanning in microtiter plates coated with
pooled serum IgE from individuals allergic to C. herbarum
captured with monoclonal mouse anti-human IgE monoclonal
antibody TN-142 (33). Serum donors were selected according to case
history, specific IgE to C. herbarum determined by
radioallergosorbent test and skin reactivity to commercial C. herbarum extracts (34). A wide variety of phage binding to human
serum IgE was isolated.
Identification of a Clone Encoding Cla h 8--
Enriched
phagemids were used to infect E. coli XL1-Blue cells,
plated onto square agar plates at a density of 2000-5000 colonies per
plate and grown at 37 °C overnight. Using a picking/gridding robot,
5376 colonies were arrayed into 384-well microtiter plates, grown at
37 °C, and replicated into new microtiter plates using a 384-pin
replication tool to produce working copies (35). cDNA inserts of
all picked clones were amplified by PCR in 384-well format, and PCR
products were gridded in duplicate onto 222 × 222 mm Nylon filter
membranes at a density of 27,648 spots/filter using a picking/gridding
robot (36). Repetitive filter hybridizations using
digoxigenin-labeled PCR probes derived from randomly selected clones were performed as described (37) until all different sequences
contained in the 5376-clone sample were identified (38). The 38 different inserts obtained were sequenced using the dideoxynucleotide chain termination method (39). Both DNA strands were sequenced using
vector-derived primers. Homology searches and sequence comparisons were
performed with BLAST and the Genetics Computer Group program FASTA. One
clone revealed strong homology with nucleotide sequences encoding cold
shock protein.
Cloning, Expression, and Purification of Recombinant Cla h
8--
The cDNA encoding Cla h 8 was amplified by standard
PCR from the corresponding phagemid using the following primers:
5'-primer, 5'-CG GGA TCC ATG GAC GCC
TCC ACC GAA CG-3'; 3'-primer, 5'-CC AAG CTT TTA
GTT GTT GCG GAC GCT GG-3', thus introducing a BamHI and a HindIII restriction site (underlined). PCR
cycling conditions were 94 °C for 60 s, 54 °C for 60 s,
and 72 °C for 60 s for 30 cycles, followed by a terminal
extension cycle at 72 °C for 10 min. The amplification product was
purified over QIAquick spin columns (Qiagen Inc., Chatsworth,
CA), digested with BamHI and HindIII, ligated to
BamHI/HindIII-restricted p(His6)-DHFR
vector (40) and transformed into E. coli strain M15 (41) by
electroporation. Transformants were grown in liquid culture to verify
the nucleotide sequence (30) and used to produce hexahistidine-tagged
recombinant protein. The specific binding of human serum IgE from
individuals sensitized to C. herbarum to recombinant Cla h 8 was analyzed by an antigen-specific enzyme-linked immunosorbent assay
as described (42).
A single colony containing M15 E. coli cells was inoculated
in LB Amp/Kana medium at 37 °C to an optical density of 0.5-0.9. The expression of His6-Cla h 8 was induced by the
addition of 1 mM
isopropyl-1-thio-
-D-galactopyranoside. After 5 h,
the cells were harvested by centrifugation (15 min, 5000 × g), and the pellet was resuspended in extraction buffer (50 mM NaPi, pH 7, 300 mM NaCl, 0.1%
Trasylol). Subsequently, the cells were broken by ultrasonication (3 × 20 s, 80 W) on ice followed by centrifugation at
10,000 × g for 20 min. The supernatant was tested by
SDS-PAGE for the presence of soluble His6-Cla h 8 fusion
protein and was then applied to a TALON metal affinity resin column
(CLONTECH Laboratories, Palo Alto, CA). The
His6-Cla h 8 fusion protein was eluted from the resin by
pulsing with 1 ml of elution buffer (50 mM
NaPi, pH 7, 300 mM NaCl, 0.1% Trasylol, 150 mM imidazole). After this step, a purification of 95% was
achieved. To further increase the purity of the protein, the combined
Cla h 8-containing fractions were dialyzed against buffer A (20 mM NaPi, pH 7.2) and loaded onto a Q-Sepharose
column (Amersham Biosciences). A discontinuous gradient was run
from 0
60% B in 10 min, and from 60%
100% B in 50 min
(buffer B = 20 mM NaPi, 1.2 M
NaCl, pH 7.2). Cla h 8 with a purity of >99% was thus obtained (see
Fig. 1). Fractions containing pure Cla h 8 were pooled, extensively dialyzed against 50 mM NaPi and 50 mM NaCl, pH 7.2, and stored at
20 °C. The
concentration of Cla h 8 was determined by the Bradford assay (43).

View larger version (42K):
[in this window]
[in a new window]
|
Fig. 1.
SDS-PAGE of purified Cla h 8 after Coomassie
Blue staining. Lane A, molecular mass marker.
Lane B, Cla h 8.
|
|
CD Measurements--
The CD spectrum of 5 µM Cla h
8 was recorded on a Jasco J-710 spectropolarimeter (Japan
Spectroscopic, Tokyo, Japan). Far-UV CD measurements were carried
out in the range between 195-250 nm using a quartz cuvette with a path
length of 0.1 cm, a response time of 0.25 s, and a data point
resolution of 0.1 nm. Three scans were recorded to obtain smooth
spectra. Mean residue ellipticities of background-corrected spectra
were calculated by JASCO standard analysis. Analysis of the spectra
with respect to secondary structure content was performed using the
algorithm SELCON (44). For thermal denaturation studies,
Cla h 8 was diluted into 50 mM NaPi pH 7.2, and
50 mM NaCl to a final concentration of 38 µM.
A spectrum at the indicated temperature was recorded after an
equilibration period of 3 min.
Homology Modeling of Cla h 8--
A model of the
three-dimensional structure of Cla h 8 was obtained by homology-based
modeling using the Swiss-Model server (45). As templates, the
structures of the CSPs of E. coli, Bacillus subtilis, and Bacillus caldolyticus
(PDB entries 3MEF, 1NMG, and 1C9O) were used. Further refinement of the
Cla h 8 structure was accomplished by applying 200 steps of steepest
descent energy minimization followed by a 100-ps molecular dynamics
simulation using the program Insight II and Discover (Molecular
Simulation Inc., San Diego, CA). Throughout the refinement procedure,
the total energy of the system was found to decrease and to reach a
stable minimum value after 30 ps of molecular dynamics simulation.
Isothermal Fluorescence Titrations--
Steady state
fluorescence measurements were performed at room temperature on a
Perkin Elmer Life Sciences LS50B fluorometer. The emission of a 60 nM equilibrated Cla h 8 solution upon excitation at 282 nm
was recorded over the range of 300-400 nm. Binding isotherms were
obtained by coupling the cuvette holder to a thermostat and by the
addition of an aliquot of the respective oligonucleotide ligand,
allowing for an equilibration period of 2 min. The slit width was set
at 10 and 15 nm for excitation and emission, respectively, and the
spectra were recorded with 200 nm/min. A 290-nm cut-off was inserted
to avoid stray light. As ss ligands, the oligonucleotides 5'-GTGGGAATCCTACTGATTGGCCAAGGTGCTGGTGG-3' (Yb+) and
5'-CCACCAGCACCTTGGCCAATCCAGTAGGATTCCCAC-3' (Yb
)
were used. The concentration of the oligonucleotides was determined by their absorption at 260 nm. To obtain the corresponding dsDNA (Yb±), equimolar amounts of Yb+ and Yb
were annealed by heating the mixture for 5 min at 65 °C followed by a slow cooling period of 60 min to 30 °C. According to reversed phase high
performance liquid chromatography (data not shown), the yield of dsDNA
thus obtained was >95% Yb±, which was therefore used in the
isothermal titration experiments without further purification.
The fluorescence spectra of Cla h 8 were background-corrected, and the
respective areas were integrated between 300 and 400 nm. The normalized
mean changes in fluorescence intensity
(
F/F0) resulting from three
independent experiments were plotted against the ligand concentration.
The resulting binding isotherms were analyzed by nonlinear regression
using the program Origin (Microcal Inc.) to Equation 1 describing a
bimolecular association reaction as described previously (17, 18, 46,
47)
|
(Eq. 1)
|
where Fi is the initial and
Fmax is the maximum fluorescence value,
Kd is the dissociation constant, and [Cla h 8] and
[DNA] are the total concentrations of Cla h 8 and DNA ligand, respectively. The fitted parameters were
Fmax and Kd.
Fluorescence Anisotropy--
Temperature-induced anisotropy
changes were recorded at an emission wavelength of 336 nm by a stepwise
increase of the temperature of a 300 nM Cla h 8 solution in
the range 8-90 °C. Five minutes of equilibration at each
temperature were allowed before the anisotropy signal was measured over
30 s. The data shown represent the mean of three independent measurements.
 |
RESULTS |
Cla h 8 consists of 73 amino acids with a calculated
molecular mass of 8.1 kDa. The sequence of Cla h 8 is shown in
Fig. 2. It displays high sequence homology
with bacterial CSPs like CspA from E. coli (76% homology)
and CspB from B. subtilis (70% homology). Although from eukaryotic origin, it exhibits only 57% homology with
the cold shock domain of the human Yb-binding protein 1. As in the
bacterial CSPs, highly conserved regions within Cla h 8 are the
1-,
2-, and
3-sheets, which correspond to the putative oligonucleotide binding sites of the protein. Based upon the high sequence homology, a similar overall fold of Cla h 8 compared with the
structurally well documented bacterial CSPs can be expected. It was
therefore possible to compute a homology-based model of Cla h 8 based
on the three-dimensional structures of the CSPs of E. coli,
B. subtilis, and B. caldolyticus (4-7, 48) using for a first approach the Swiss-Model protein modeling server (45). The
obtained structure was further refined by applying energy minimization
and molecular dynamics computer simulation (see "Materials and
Methods"). The final model of Cla h 8 exhibited a five-stranded
-barrel structure (not shown) and was therefore found to correspond to the general fold of the CSP family. However, the subtle differences in the primary structure between Cla h 8 and bacterial CSPs,
e.g. an arginine residue at position 38 of Cla h 8, which is
occupied by a serine or a threonine side chain in most bacterial CSPs, may be responsible for the differences in the oligonucleotide binding
behavior outlined below.

View larger version (12K):
[in this window]
[in a new window]
|
Fig. 2.
Sequence alignment of Cla h 8 with bacterial
CSPs and the CSD of Yb-1. The predicted -sheets of Cla h 8 are
indicated based on the homology with the bacterial CSPs.
|
|
To experimentally determine the secondary structure content of Cla h 8, far-UV CD spectra were recorded (see Fig. 3).
Analysis of the spectrum recorded at 25 °C with respect to secondary
structure (43) showed that 41% of the residues exhibit
-sheet
structure. This value increased to 52% when the temperature was
decreased to 15 °C (see Fig. 3) referring to an overall
stabilization of the predicted all-
structure of Cla h 8 at reduced
temperatures. Absolute values of secondary structure content must be
regarded very cautiously because of the possible impact of aromatic
amino acids on the secondary structure analysis especially in the
-sheet range. However, since we are comparing two states of the same protein under different conditions with respect to
-sheet content, the relative increase is revealed with high confidence. The
-helical content of Cla h 8 was found to be very low (<7%), independent from
the temperature, thus further confirming the all-
structure of the
protein.

View larger version (18K):
[in this window]
[in a new window]
|
Fig. 3.
CD spectra of 5 µM Cla h 8 at
13 °C and at
25 °C. Shown are the mean residue
ellipticities of the spectra averaged over three scans.
|
|
Because of the structural stabilization of Cla h 8 observed at reduced
temperatures (see Fig. 3), thermal unfolding curves using far-UV CD
spectroscopy, which relate to the protein's secondary structure, were
recorded at three different wavelengths: 208 nm, 216 nm, and 222 nm.
The results are displayed in Fig. 4. They reveal a transition of unfolding at 35.7 °C, which is uncommonly low
compared with other bacterial CSPs (9-12). The transition of unfolding
increased, however, to 42.2 °C upon addition of Yb+ (see Fig.
5), which is a ssDNA ligand of Cla h 8 (see
below). Ligand binding obviously stabilizes the protein indicating an induced fit of Cla h 8 upon ligand binding.

View larger version (12K):
[in this window]
[in a new window]
|
Fig. 4.
Thermal unfolding of 38 µM Cla h 8 monitored by far-UV CD
spectroscopy at the wavelengths 208 ( ), 216 ( ), and 222 nm
( ). The values shown represent the mean values of three
independent measurements. The transition point was calculated by
fitting the data to the Boltzmann equation.
|
|

View larger version (12K):
[in this window]
[in a new window]
|
Fig. 5.
Thermal unfolding of 38 µM Cla h 8 monitored by far-UV CD
spectroscopy at 208 nm in the absence ( ) and in the presence ( )
of the ssDNA ligand Yb+. The values shown represent the mean
values of three independent measurements. The transition point was
calculated by fitting the data to the Boltzmann equation.
|
|
To monitor the unfolding of Cla h 8 by detecting changes of the
tertiary/quaternary structure, the temperature-dependent
fluorescence anisotropy of the protein was recorded (see Fig.
6). The fluorescence emission of Cla h 8 was
dominated by the intrinsic tryptophan chromophore at position 14. Depolarization of the fluorescence occurs due to the local movements of
the fluorophore and to the rotational motion of the protein. The latter
parameter corresponds to the hydrodynamic volume and thus to the
oligomerization state of the macromolecule. As can be seen in Fig. 6, a
single transition at 28.0 °C to lower anisotropy values upon
increasing the temperature was obtained. The difference in the
unfolding transitions observed in the CD and the fluorescence
measurements clearly indicate a multistate transition (51).

View larger version (12K):
[in this window]
[in a new window]
|
Fig. 6.
Temperature dependence of the fluorescence
anisotropy of 300 nM Cla h 8. The values shown
represent the mean values of three independent measurements. The
transition point was calculated by fitting the data to the Boltzmann
equation.
|
|
To investigate the affinity of Cla h 8 for DNA, isothermal fluorescence
titration curves of Cla h 8 were recorded using, as in the fluorescence
anisotropy measurements, the intrinsic fluorescence emission of Trp-14.
This residue is highly conserved in the CSP family and is supposed to
directly interact with oligonucleotides. As ligands, two ssDNAs were
used, corresponding to the 35-mers of the sense (Yb+) and the antisense
(Yb
) region of the human Y-box 1 (see "Materials and Methods"),
as well as the annealed ds oligonucleotide Yb±. Unlike CspA and CspB
(16-18), Yb
bound to Cla h 8 with a significantly higher affinity
than Yb+ at the cellular growth optimum temperature (25 °C, see
Table I). This clear discrimination was
lost under cold shock conditions (13 °C). The
-sheet content, as
detected by CD spectroscopy, was found to increase by the addition of a
molar excess of each of the three ligands at 13 °C (data not shown).
Interestingly, at 13 °C as well as at 25 °C, only Yb
induced a
10-nm red shift of the fluorescence maximum upon complete saturation,
whereas Yb+ and Yb± only quenched the fluorescence emission without a shift. This refers to different Cla h 8 binding geometries of Yb
compared with Yb+ and Yb±. Contrary to CspA, the dsDNA (Yb±) was
found to bind with significant affinity to Cla h 8 at 25 °C (see
Table I). This affinity was increased by a factor of 3-4 when the
temperature was decreased to 13 °C, whereas no binding of Yb± was
detected at 37 °C (see Fig. 7) because of
the partial unfolding of Cla h 8 at this temperature. In addition, the
ability of Cla h 8 to discriminate between ssDNA and dsDNA was found to be higher at 25 °C than at 13 °C, as becomes obvious from
comparing the dissociation constants of Yb
and Yb± at these two
temperatures (see Table I).
View this table:
[in this window]
[in a new window]
|
Table I
Dissociation constants of Cla h 8
The dissociation constants of the interaction of Cla h 8 with different
ligands were obtained by analysing the fluorescence binding isotherms
according to Eq. 1.
|
|

View larger version (11K):
[in this window]
[in a new window]
|
Fig. 7.
Fluorescence binding isotherms of Cla h 8 interacting with Yb± at 13 ( ), 25 ( ), and
at 37 °C ( ). The normalized mean changes in fluorescence
intensity ( F/F0) resulting from
three independent experiments are plotted against the ligand
concentration. The resulting binding isotherms were fitted by
non-linear regression to Eq. 1 to obtain the dissociation constants,
Kd as described previously (17, 18, 45, 46).
|
|
 |
DISCUSSION |
Cla h 8 was identified as an IgE-binding protein from a
C. herbarum phage surface-displayed cDNA library. This
minor allergen of C. herbarum exhibited high sequence
homology with bacterial CSPs and was therefore identified as the first
eukaryotic cold shock protein that is not a functional domain of a
Y-box binding protein. In prokaryotes, little is known about the
involvement of CSPs in dsDNA processing. Although CspA was shown to act
as a cold shock transcriptional enhancer of at least two genes in E. coli, the protein lacks in vitro any ability
of binding to dsDNA (49, 50). In eukaryotes, Y-box binding proteins act as transcription factors, and they were shown to bind to dsDNA in
vitro. The cold shock domain of Y-box binding proteins was found
to be necessary but not sufficient for the interaction with dsDNA (27).
Recently, the basic amino acids-containing loop between the
3 and
4 strands of the human Y-box binding protein 1 was shown to be
important for dsDNA binding, and that this loop, when incorporated into
CspA, induced dsDNA binding in this bacterial CSP (26). However, this
loop was not found in Cla h 8, although the protein's ability to bind
to dsDNA, especially at low temperatures, is striking (see Fig. 7). It
can therefore be hypothesized that Cla h 8 represents an evolutionary
link between prokaryotic CSPs and eukaryotic cold shock domains
contained within Y-box-binding proteins.
Structurally, the overall fold of Cla h 8 is assumed to resemble the
all-
-sheet motif of bacterial CSPs. This is due to the high sequence
homology of Cla h 8 with bacterial CSPs, which allowed the modeling of
a reliable three-dimensional structure of the allergen. The high
-sheet content of the protein became manifest in the far-UV CD
spectra of the protein (see Fig. 3). However, Cla h 8 seems to be much
less stable than bacterial CSPs, exhibiting thermal unfolding
transitions at 35.7 or at 28 °C (see Figs. 4 and 6) depending upon
the method used; unfolding monitored by CD spectroscopy refers to a
transition of the protein's secondary structure, whereas fluorescence
anisotropy refers to a transition of the protein's tertiary and
quaternary structure. The different transition temperatures found by
the two methods, which reflect different structural features, refer to
a multistate thermal transition of Cla h 8 (51).
The low unfolding transition of Cla h 8 might refer to a short lifetime
of the uncomplexed protein in vivo. Thermal stability of Cla
h 8 was found to increase by the addition of ssDNA (see Fig. 5). We
have recently shown that in the case of nucleotide or carbohydrate
binding the thermal stability of proteins like transcription factors or
chemokines can be improved significantly (52, 53). Additional
intramolecular bonds between the receptor and the ligand lead, if
exothermic, together with a reduction of the degrees of freedom to a
significant stabilization of the protein structure. Cla h 8 can
therefore be postulated to bind with high affinity to nucleic acids
in vivo to increase its own stability. If thereby the
stability of, for example, mRNA becomes decreased Cla h 8 acts as a
so-called RNA chaperone, a function which has long been proposed for
CSPs (21).
 |
FOOTNOTES |
*
This work was supported by Austrian Science Fund Grant
13635-CHE (to A. J. K.) and by Swiss National Science Foundation
Grant 31-63381.00 (to R. C.).The costs of publication of this
article were defrayed in part by the
payment of page charges. The article must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
To whom correspondence should be addressed. Tel.:
43-316-380-5373; Fax: 43-316-382541; E-mail:
andreas.kungl@kfunigraz.ac.at.
Published, JBC Papers in Press, February 22, 2002, DOI 10.1074/jbc.M200833200
 |
ABBREVIATIONS |
The abbreviations used are:
CSP, cold shock
protein;
Yb proteins, Y-box binding proteins;
ss, single stranded;
ds, double-stranded;
CspA, cold shock protein A from E. coli;
CspB, cold shock protein B from B. subtilis;
Cla h 8, cold
shock protein from C. herbarum;
CD, circular
dichroism.
 |
REFERENCES |
| 1.
|
Graumann, P.,
and Marahiel, M. A.
(1998)
Trends Biochem. Sci
23,
286-290[CrossRef][Medline]
[Order article via Infotrieve]
|
| 2.
|
Phadtare, S.,
Alsina, J.,
and Inouye, M.
(1999)
Curr. Opin. Microbiol.
2,
175-190[CrossRef][Medline]
[Order article via Infotrieve]
|
| 3.
|
Murzin, A. G.
(1993)
EMBO J.
12,
861-867[Medline]
[Order article via Infotrieve]
|
| 4.
|
Schindelin, H.,
Marahiel, M. A.,
and Heinemann, U.
(1993)
Nature
364,
164-168[CrossRef][Medline]
[Order article via Infotrieve]
|
| 5.
|
Newkirk, K.,
Feng, W.,
Jjiang, W.,
Tejero, R.,
Emerson, S. D.,
Inouye, M.,
and Montelione, G.
(1994)
Proc. Natl. Acad. Sci. U. S. A.
91,
5114-5118[Abstract/Free Full Text]
|
| 6.
|
Schnuchel, A.,
Wiltscheck, R.,
Czisch, M.,
Herrler, M.,
Willimsky, G.,
Graumann, P.,
Marahiel, M. A.,
and Holak, T. A.
(1993)
Nature
364,
169-171[CrossRef][Medline]
[Order article via Infotrieve]
|
| 7.
|
Schindelin, H.,
Jiang, W.,
Inouye, M.,
and Heinemann, U.
(1994)
Proc. Natl. Acad. Sci. U. S. A.
91,
5119-5123[Abstract/Free Full Text]
|
| 8.
|
Feng, W.,
Tejero, R.,
Zimmerman, D. E.,
Inouye, M.,
and Montelione, G.
(1998)
Biochemistry
37,
10881-10896[CrossRef][Medline]
[Order article via Infotrieve]
|
| 9.
|
Wassenberg, D.,
Welker, C.,
and Jaenicke, R.
(1999)
J. Mol. Biol.
289,
187-193[CrossRef][Medline]
[Order article via Infotrieve]
|
| 10.
|
Hillier, B. J.,
Rodriguez, H. M.,
and Gregoret, L. M.
(1998)
Folding Des.
3,
87-93[CrossRef][Medline]
[Order article via Infotrieve]
|
| 11.
|
Rodriguez, H. M., Vu, D. M.,
and Gregoret, L. M.
(2000)
Protein Sci.
9,
1993-2000[Abstract]
|
| 12.
|
Schindler, T.,
Perl, D.,
Graumann, P.,
Sieber, V.,
Marahiel, M. A.,
and Schmid, F. X.
(1998)
Proteins Struct. Funct. Genet.
30,
401-406[CrossRef][Medline]
[Order article via Infotrieve]
|
| 13.
|
Didier, D. K.,
Schiddenbauer, J.,
Woulfe, S. L.,
Zacheis, M.,
and Schwartz, B. D.
(1988)
Proc. Natl. Acad. Sci. U. S. A.
85,
7322-7732[Abstract/Free Full Text]
|
| 14.
|
Hasegawa, S. L.,
Doetsch, P. W.,
Hamilton, K. K.,
Martin, A. M.,
Okenquist, S. A.,
Lenz, J.,
and Boss, J. M.
(1991)
Nucleic Acids Res.
19,
4915-4920[Abstract/Free Full Text]
|
| 15.
|
Graumann, P.,
and Marahiel, M. A.
(1994)
FEBS Lett.
338,
157-160[CrossRef][Medline]
[Order article via Infotrieve]
|
| 16.
|
Lopez, M. M.,
and Makhatadze, G. I.
(2000)
Biochim. Biophys. Acta
1479,
196-202[CrossRef][Medline]
[Order article via Infotrieve]
|
| 17.
|
Lopez, M. M.,
Yutani, K.,
and Makhatadze, G. I.
(1999)
J. Biol. Chem.
274,
33601-33608[Abstract/Free Full Text]
|
| 18.
|
Lopez, M. M.,
Yutani, K.,
and Makhatadze, G. I.
(2001)
J. Biol. Chem.
276,
15511-15518[Abstract/Free Full Text]
|
| 19.
|
Goldstein, J.,
Pollitt, S.,
and Inouye, M.
(1990)
Proc. Natl. Acad. Sci. U. S. A.
87,
283-287[Abstract/Free Full Text]
|
| 20.
|
Jones, P. G.,
Van Bogelen, R. A.,
and Neidhardt, F. C.
(1987)
J. Bacteriol.
169,
2092-2095[Abstract/Free Full Text]
|
| 21.
|
Jjiang, W.,
Hou, Y.,
and Inouye, M.
(1997)
J. Biol. Chem.
272,
196-202[Abstract/Free Full Text]
|
| 22.
|
Bae, W.,
Inouye, M.,
and Severinov, K.
(2000)
Proc. Natl. Acad. Sci. U. S. A.
97,
7784-7789[Abstract/Free Full Text]
|
| 23.
|
Yamanaka, K.,
and Inouye, M.
(2001)
Genes Cells
6,
279-290[Abstract]
|
| 24.
|
Matsumoto, K.,
and Wolffe, A. P.
(1998)
Trends Cell Biol.
8,
318-323[CrossRef][Medline]
[Order article via Infotrieve]
|
| 25.
|
Bouvet, P.,
and Wolffe, A. P.
(1994)
Cell
77,
931-941[CrossRef][Medline]
[Order article via Infotrieve]
|
| 26.
|
Wang, N.,
Yamanaka, K.,
and Inouye, M.
(2000)
Mol. Microbiol.
38,
526-534[CrossRef][Medline]
[Order article via Infotrieve]
|
| 27.
|
Izumi, H.,
Imamura, T.,
Nagatani, G.,
Ise, T.,
Murakami, T.,
Uramoto, H.,
Torigoe, T.,
Ishigughi, H.,
Yoshida, Y.,
Nomoto, M.,
Okamoto, T.,
Uchiumi, T.,
Kuwano, M.,
Funa, K.,
and Kohno, K.
(2001)
Nucleic Acids Res.
29,
1200-1207[Abstract/Free Full Text]
|
| 28.
|
Achatz, G.,
Oberkofler, H.,
Lechnauer, E.,
Simon, B.,
Unger, A.,
Kandler, C.,
Ebner, C.,
Prillinger, H.,
Kraft, D.,
and Breitenbach, M.
(1995)
Mol. Immunol.
32,
213-227[CrossRef][Medline]
[Order article via Infotrieve]
|
| 29.
|
Crameri, R.,
Achatz, G.,
Weichel, M.,
and Rhyner, C.
(2001)
in
Methods in Molecular Biology
(Tuksen, K., ed)
, pp. 461-469, Humana Press, Inc., Totowa, NJ
|
| 30.
|
Sambrook, J.,
Fritsch, E. F.,
and Maniatis, T.
(1989)
Molecular Cloning: A Laboratory Manual
, 2nd Ed.
, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
|
| 31.
|
Short, J. M.,
Fernandez, J. M.,
Sorge, J. A.,
and Huse, W. D.
(1988)
Nucleic Acids Res.
15,
7583-7600
|
| 32.
|
Crameri, R.
(1997)
in
Gene Cloning and Analysis: Current Innovations
(Schaefer, B., ed)
, pp. 29-42, Horizon Scientific Press, Wymondham, Norfolk, UK
|
| 33.
|
Crameri, R.,
Jaussi, R.,
Menz, G.,
and Blaser, K.
(1994)
Eur. J. Biochem.
226,
53-58[Medline]
[Order article via Infotrieve]
|
| 34.
|
Simon-Nobbe, B.,
Probst, G.,
Kajava, A. V.,
Oberkofler, H.,
Susani, M.,
Crameri, R.,
Ferreira-Briza, F.,
Ebner, C.,
and Breitenbach, M.
(2000)
J. Allergy Clin. Immunol.
106,
887-895[CrossRef][Medline]
[Order article via Infotrieve]
|
| 35.
|
Crameri, R.,
and Kodzius, R.
(2001)
Combin. Chem. High Throughput Screen
4,
145-155
|
| 36.
|
Crameri, R.,
Kodzius, R.,
Konthur, Z.,
Lehrach, H.,
Blaser, K.,
Walter, G.,
and Tapping.
(2001)
Int. Arch. Allergy Appl. Immunol.
124,
43-47
|
| 37.
|
Maier, E.,
Meier, E, X.,
Ahmadi, A. R.,
Curtis, J.,
and Lehrach, H.
(1994)
J. Biotechnol.
12,
433-455
|
| 38.
|
Sanger, F.,
Nicklen, S.,
and Coulson, A. R.
(1977)
Proc. Natl. Acad. Sci. U. S. A.
74,
5463-5467[Abstract/Free Full Text]
|
| 39.
|
Pearson, W. R.,
and Lipman, D. J.
(1988)
Proc. Natl. Acad. Sci. U. S. A.
85,
2444-2448[Abstract/Free Full Text]
|
| 40.
|
Moser, M.,
Crameri, R.,
Menz, G.,
Schneider, T.,
Dudler, T.,
Virchow, C.,
Gmachl, M.,
Blaser, K.,
and Suter, M.
(1992)
J. Immunol.
149,
454-460[Abstract]
|
| 41.
|
Crameri, R.,
Faith, A.,
Hemmann, S.,
Jaussi, R.,
Ismail, C.,
Menz, G.,
and Blaser, K.
(1996)
J. Exp. Med.
184,
265-270[Abstract/Free Full Text]
|
| 42.
|
Moser, M.,
Crameri, R.,
Brust, E.,
Suter, M.,
and Menz, G.
(1994)
J. Allergy Clin. Immunol.
93,
1-11[CrossRef][Medline]
[Order article via Infotrieve]
|
| 43.
|
Bradford, M. M.
(1976)
Anal. Biochem.
72,
248-254[CrossRef][Medline]
[Order article via Infotrieve]
|
| 44.
|
Srerama, N.,
and Woody, R. W.
(1993)
Anal. Biochem.
209,
32-44[CrossRef][Medline]
[Order article via Infotrieve]
|
| 45.
|
Guex, N.,
and Peitsch, M. C.
(1997)
Electrophoresis
18,
2714-2723[CrossRef][Medline]
[Order article via Infotrieve]
|
| 46.
|
Falsone, S. F.,
Kurkela, R.,
Chiarandini, G.,
Vihko, P.,
and Kungl, A. J.
(2001)
Biochem. Biophys. Res. Comm.
285,
1180-1185[CrossRef][Medline]
[Order article via Infotrieve]
|
| 47.
|
Lakowicz, J. R.
(1983)
Principles in Fluorescence Spectroscopy
, Plenum Press, NY
|
| 48.
|
Mueller, U.,
Perl, D.,
Schmid, F. X.,
and Heinemann, U.
(2000)
J. Mol. Biol.
297,
975-988[CrossRef][Medline]
[Order article via Infotrieve]
|
| 49.
|
LaTeana, A.,
Brandi, A.,
Falconi, M.,
Spurio, R.,
Pon, C. L.,
and Gualerzi, C.
(1991)
Proc. Natl. Acad. Sci. U. S. A.
88,
10907-10911[Abstract/Free Full Text]
|
| 50.
|
Jones, P. G.,
Krah, R.,
Tafuri, S. A.,
and Wolffe, A. P.
(1992)
J. Bacteriol.
174,
5798-5802[Abstract/Free Full Text]
|
| 51.
|
Lumry, R.,
Biltomen, R.,
and Brandts, J. F.
(1966)
Biopolymers
4,
917-944[CrossRef][Medline]
[Order article via Infotrieve]
|
| 52.
|
Goger, G.,
Halden, Y.,
Rek, A.,
Mösl, R.,
Pye, D.,
Gallagher, J.,
and Kungl, A. J.
(2002)
Biochemistry
41,
1640-1646[CrossRef][Medline]
[Order article via Infotrieve]
|
| 53.
|
Kristl, S.,
Zhao, S.,
Knappe, B.,
Somerville, R. L.,
and Kungl, A. J.
(2000)
FEBS Letters
467,
87-90[CrossRef][Medline]
[Order article via Infotrieve]
|
Copyright © 2002 by The American Society for Biochemistry and Molecular Biology, Inc.

CiteULike
Complore
Connotea
Del.icio.us
Digg
Reddit
Technorati What's this?
This article has been cited by other articles:

|
 |

|
 |
 
L. Giaquinto, P. M. G. Curmi, K. S. Siddiqui, A. Poljak, E. DeLong, S. DasSarma, and R. Cavicchioli
Structure and Function of Cold Shock Proteins in Archaea
J. Bacteriol.,
August 1, 2007;
189(15):
5738 - 5748.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
D. Johnston, C. Tavano, S. Wickner, and N. Trun
Specificity of DNA Binding and Dimerization by CspE from Escherichia coli
J. Biol. Chem.,
December 29, 2006;
281(52):
40208 - 40215.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
B. Simon-Nobbe, U. Denk, P. B. Schneider, C. Radauer, M. Teige, R. Crameri, T. Hawranek, R. Lang, K. Richter, P. Schmid-Grendelmeier, et al.
NADP-dependent Mannitol Dehydrogenase, a Major Allergen of Cladosporium herbarum
J. Biol. Chem.,
June 16, 2006;
281(24):
16354 - 16360.
[Abstract]
[Full Text]
[PDF]
|
 |
|