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J. Biol. Chem., Vol. 277, Issue 21, 19056-19063, May 24, 2002
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From the
Received for publication, November 15, 2001, and in revised form, January 30, 2002
Ligand recognition has been extensively
explored in G protein-coupled A1, A2A,
and A2B adenosine receptors but not in the A3
receptor, which is cerebroprotective and cardioprotective. We mutated
several residues of the human A3 adenosine receptor within
transmembrane domains 3 and 6 and the second extracellular loop,
which have been predicted by previous molecular modeling to be involved
in the ligand recognition, including His95,
Trp243, Leu244, Ser247,
Asn250, and Lys152. The N250A mutant receptor
lost the ability to bind both radiolabeled agonist and antagonist. The
H95A mutation significantly reduced affinity of both agonists and
antagonists. In contrast, the K152A (EL2), W243A (6.48), and W243F
(6.48) mutations did not significantly affect the agonist binding but
decreased antagonist affinity by ~3-38-fold, suggesting that these
residues were critical for the high affinity of A3
adenosine receptor antagonists. Activation of phospholipase C by wild
type (WT) and mutant receptors was measured. The A3 agonist
2-chloro-N6-(3-iodobenzyl)-5'-N-methylcarbamoyladenosine
stimulated phosphoinositide turnover in the WT but failed to evoke a
response in cells expressing W243A and W243F mutant receptors, in which
agonist binding was less sensitive to guanosine
5'- The physiological effects of extracellular adenosine are mediated
by four G protein-coupled receptors
(GPCRs),1 i.e.
A1, A2A, A2B, and A3
adenosine receptors. The A3 adenosine receptor, which is
the most recently identified adenosine receptor subtype (1, 2), is
implicated in a variety of important physiological processes (3-5).
Activation of A3 adenosine receptors increases the release
of inflammatory mediators, such as histamine, from rodent mast cells
(6) and inhibits the production of tumor necrosis factor- The development of agonists and antagonists for the A3
receptors has so far been directed by traditional medicinal chemistry. The availability of genetic information promises to facilitate understanding of the drug-receptor interaction leading to the rational
design of a potentially therapeutically important class of drugs.
Molecular modeling may further rationalize observed interactions
between the receptor and a ligand. Previously, models derived for GPCRs
based on structural homology with bacteriorhodopsin (12-14) had been
helpful in understanding and predicting drug-receptor interactions for
a variety of receptors. The high resolution crystal structure of bovine
rhodopsin has been determined recently (15), providing a detailed
atomic description of a GPCR in an inactive conformation and a solid
basis for modeling the structure of other rhodopsin-like GPCRs. Such
models can be used to help rationalize many observations made on the
relationships between the conserved residues and the functional
coupling properties. Conservation of functionally important sequences
or residues within a certain receptor family is generally considered as
a basis for the molecular mechanism leading to the receptor activation
in the various subtypes of this receptor family. However, considering
the diversity of ligands for different receptors or for different
subtypes of a certain receptor family, it has also been accepted that
different receptor subtypes may have quite specific structural and
functional characteristics.
The ligand-binding sites on the A1, A2A, and
A2B receptors have been characterized previously (16-20)
using site-directed mutagenesis. However, the molecular basis for
ligand recognition in the A3 adenosine receptor remains
largely unknown. Only very recently, we created a "neoceptor" and
several constitutively active mutant human A3 adenosine
receptors by site-directed mutagenesis (21, 22), which provided new
insight into the molecular recognition in the A3 receptor.
In order to provide additional insights into ligand-A3
adenosine receptor interactions, site-directed mutagenesis was used to
study the role of a number of residues in the transmembrane (TM)
domains and the second extracellular loop (EL2, Fig.
1). The present study identified a number
of residues essential for high affinity binding of agonist and/or
antagonist, as well as the receptor activation process. The results
were interpreted with the aid of a model of ligand-A3
receptor interactions based on the high resolution crystal structure of
bovine rhodopsin.
Materials--
The vector pcDNA3 was obtained from
Invitrogen. Human A3 adenosine receptor cDNA was
provided by M. Atkinson, A. Townsend-Nicholson, and P. R. Schofield (Garvan Medical Institute, Sydney, Australia) and was
subcloned in pcDNA3 as pcDNA3/hA3R. All
oligonucleotides used were synthesized by Bioserve Biotechnologies
(Laurel, MD). [125I]N6-(4-Amino-3-iodobenzyl)adenosine-5'-N-methyluronamide
([125I]I-AB-MECA; 2000 Ci/mmol) and
[3H]8-ethyl-4-methyl-2-phenyl-(8R)-4,5,7,8-tetrahydro-1H-imidazo[2.1-i]purin-5-one ([3H]PSB-11) (23) were from Amersham Biosciences;
myo-[3H]inositol (20 Ci/mmol) was obtained from American
Radiolabeled Chemicals (St. Louis, MO).
2-Chloro-N6-(3-iodobenzyl)adenosine-5'-N-methyluronamide
(Cl-IB-MECA) and GTP Numbering Scheme of GPCRs--
For sequence alignments of
selected regions of A3 adenosine receptors and other GPCRs,
the standardized numbering system of van Rhee and Jacobson (25) was
used to identify residues in the transmembrane domains (TMs) of various
receptors. Each residue is identified by two numbers as follows: the
first corresponds to the TM in which it is located; the second
indicates its position relative to a particular highly conserved
residue in that helix, arbitrarily assigned to 50. For example, His3.37
is the histidine in TM3, located 13 residues before the conserved
arginine R3.50; Trp(6.48) corresponds to Trp243.
Molecular Modeling--
Briefly, a model of the human
A3 receptor was built in homology to the recently published
x-ray structure of bovine rhodopsin (15) as described (21) using the
Sybyl 6.6 modeling package. The model included the seven TMs (built and
minimized individually and then grouped to form a helical bundle by
adding one at a time) and the second extracellular loop, EL2
(conformation was initially modeled according to the corresponding
domain of rhodopsin including the Cys83-Cys166
disulfide bond). Models of the ligands were constructed using the
"Sketch Molecule" module of Sybyl. The ligands were minimized in
Sybyl (using MOPAC calculated partial atomic charges) and were rigidly
docked into the helical bundle using graphic manipulation coupled to
continuous energy monitoring. Manual adjustments of ligand conformation
were followed by additional minimization runs of up to 1500 steps,
using the Tripos force field with Amber all-atom force parameters until
the root mean square value of the conjugate gradient (CG) was <0.1
kcal/mol/Å. A fixed dielectric constant = 4.0 was used throughout
these calculations.
Transient Expression of Wild Type (WT) and Mutant Receptors in
COS-7 Cells--
COS-7 cells (10 Membrane Preparation--
After 48 h of transfection COS-7
cells were washed two times with phosphate-buffered saline (without
calcium) and harvested by trypsinization. Harvested cells were
homogenized using a Polytron homogenizer and then centrifuged at
16,000 × g for 20 min. The resulting pellet was
resuspended in the 50 mM Tris·HCl buffer (pH 8.0) in the
presence of 3 units/ml ADA and stored at [125I]I-AB-MECA Binding Assay--
For the agonist
binding assay (21), each tube contained 50 µl of membrane suspension
(8-12 µg of protein), 25 µl of [125I]I-AB-MECA (for
competition studies, final concentration 1.0 nM), and 25 µl of increasing concentrations of the test ligands in Tris·HCl
buffer (50 mM, pH 8.0) containing 10 mM
MgCl2, 1 mM EDTA. For saturation analysis of
[125I]I-AB-MECA binding, concentrations ranging from 0.1 to 20 nM were used. Kd values of the
radioligand were determined for all mutant receptors. Nonspecific
binding was determined using 10 µM Cl-IB-MECA in buffer.
The mixtures were incubated at 37 °C for 60 min. Binding reactions
were terminated by filtration through Whatman GF/B filters under
reduced pressure using a MT-24 cell harvester (Brandell, Gaithersburg,
MD). Filters were washed three times with 9 ml of ice-cold buffer.
Radioactivity was determined in a Beckman 5500B Binding of the Radiolabeled, Selective Antagonist
[3H]PSB-11 to A3 Adenosine
Receptors--
Membranes (80 µg of protein) were incubated with 8 nM [3H]PSB-11 (23) at 25 °C in a total
assay volume of 400 µl for 60 min). Nonspecific binding was measured
in the presence of 10 µM Cl-IB-MECA. Binding reactions
were terminated by filtration through Whatman GF/B filters under
reduced pressure using a MT-24 cell harvester (Brandel, Gaithersburg, MD).
Inositol Phosphate Determination--
The method used was
similar to that of Harden et al. (28). About 24 h after
transfection, the cells were harvested by trypsinization and grown in
6-well plates (~106 cells/well; Costar, Cambridge, MA) in
Dulbecco's modified Eagle's culture medium supplemented with 2 µCi/ml myo-[3H]inositol. After a 24-h labeling period,
cells were preincubated in the presence of 3 units/ml ADA for 30 min at
37 °C with 10 mM LiCl and for 20 min at room
temperature. The mixtures were swirled to ensure uniformity. Following
the addition of the agonist Cl-IB-MECA, the cells were incubated for 30 min at 37 °C and 5% CO2. The supernatants were removed
by aspiration, and 750 µl of cold 20 mM formic acid was
added to each well. Cell extracts were collected after a 30-min
incubation at 4 °C and neutralized with 250 µl of 60 mM NH4OH. The inositol monophosphate fraction
was then isolated by anion exchange chromatography (29). The content of
each well was applied to a small anion exchange column (AG-1-X8; Bio-Rad) that had been pretreated with 15 ml of 0.1 M
formic acid, 3 M ammonium formate, followed by 15 ml of
water. The columns were then washed with 15 ml of a solution containing
5 mM sodium borate and 60 mM sodium formate.
[3H]Inositol phosphates were eluted twice with 5 ml of
0.1 M formic acid, 0.2 M ammonium formate, and
radioactivity was quantified by liquid scintillation counting (LKB
Wallace 1215 Rackbeta scintillation counter).
Statistical Analysis--
Binding and functional parameters were
calculated using the Prism software (GraphPAD, San Diego).
IC50 values obtained from competition curves were converted
to Ki values using the Cheng-Prusoff equation (30).
Data were expressed as means ± S.E.
The A3 receptor cDNAs were initially isolated from
rat testis and rat brain cDNA libraries and later from other
species (31, 32). Sequence alignments for selected transmembrane
domains of four human adenosine receptor subtypes, sheep and rat
A3 receptors, and other GPCRs are shown in Fig.
2. The A3 receptor
exhibits the lowest degree of identity between species compared with
other adenosine receptor subtypes (31, 32). The residues of the human
A3 adenosine receptor selected for mutation in this study are shown in boldface type. His95 (3.37) is conserved in
A3 receptors from various species including human, sheep
and rat, and the corresponding residue in A1 and A2A adenosine receptor (Gln) has been studied (33, 34).
Lys152 occurs in the second extracellular loop (EL2). Three
residues in TM6 were mutated as follows: Trp243 (6.48),
Ser247 (6.52; corresponding to His in human A1
and A2A receptors), and Asn250 (6.55). All of
these residues were predicted in molecular modeling (21) to be involved
in the ligand recognition in the A3 adenosine receptor. By
comparison, we also tested the role of Leu244 (6.49), which
was not predicted to be involved in ligand recognition but was located
one helical turn below Ser247. Each of these residues was
individually replaced with Ala or both Ala and Phe.
Ligand Binding Properties of the WT and Mutant Receptors--
The
affinity of a number of agonists and antagonists belonging to different
chemical classes (Fig. 3) were tested in
both WT and mutant receptors. As shown in Fig.
4, following the mutation of
His95 to Ala, the affinity of the high affinity selective
A3 agonist, Cl-IB-MECA, decreased 26-fold. Similar to
Cl-IB-MECA, the affinity of other agonists and antagonists with
different structures was decreased by the H95A mutation (Table
I). The affinity of most test ligands for
the H95A mutant receptor was ~10-100-fold lower than that for the WT
receptor, suggesting that this residue is important for ligand
recognition in the A3 adenosine receptor.
The Trp residue (6.48) is conserved among all four subtypes of
adenosine receptors and a variety of other GPCRs (Fig. 3) and was
proposed to be involved in ligand recognition in human A3 adenosine receptors as predicted by molecular modeling. However, the
replacement of this Trp by Ala or Phe did not influence the agonist
binding affinity, as determined by saturation experiment using
[125I]I-AB-MECA. The displacement of
[125I]I-AB-MECA binding by five agonists, adenosine
derivatives CADO, Cl-IB-MECA, and NECA; the rigid methanocarba
derivative MRS1898 (24); and the xanthine riboside
N-methyl-1,3-dibutylxanthine 7-
In contrast to the agonist binding, the binding affinity of the
A3 antagonist MRS1220 was diminished ~30-fold for the
W243A mutant receptor (Fig. 5). Similar
to MRS1220, other test antagonists also showed a marked decrease of
binding affinity following the mutation of the Trp residue (Table I),
suggesting the involvement, either directly or indirectly, of this
residue in antagonist recognition.
Following the substitution of Leu244 or Ser247
with Ala, saturation experiments were carried out using
[125I]I-AB-MECA as a radioligand. Competitive binding of
various ligands to human WT and mutant A3 adenosine
receptors demonstrated that the binding parameters for all the agonists
and antagonists were only slightly affected (Table I). In contrast to
L244A and S247A mutant receptors, the specific binding of
[125I]I-AB-MECA (1.0 nM) to the N250A mutant
receptor was not detectable. In order to examine the effects of this
mutation on antagonist binding, a radiolabeled A3
antagonist [3H]PSB-11 (8 nM, final
concentration) was used in the experiment. Similar to the
[125I]I-AB-MECA binding, the mutation also resulted in a
complete loss of high affinity [3H]PSB-11 binding,
suggesting that Asn250 is essential, either directly or
indirectly, for ligand recognition in the human A3
adenosine receptor. The proximity of this residue to the putative
ligand binding site was predicted using the molecular modeling.
The Lys residue of EL2 was predicted to be involved in ligand
recognition using a molecular model of the A3 adenosine
receptor (see below). Following the K152A mutation, the affinity of all the agonists tested was essentially unchanged; however, the
antagonist affinity decreased 3-9-fold, suggestive of the possible
involvement of this residue in antagonist recognition. The
Kd and Ki values were summarized
in Table I.
Agonist-induced Phosphoinositide Turnover in COS-7 Cells Expressing
WT and Mutant Receptors--
The A3 adenosine receptor is
coupled to Gi protein, whereas coupling to Gq
protein is controversial, because some studies have shown that PLC
activation by the A3 adenosine receptor is prevented by
pertussis toxin (3, 35). To test the activation of the WT and mutant
receptors, we initially attempted to perform a cyclic AMP
production assay in transfected COS-7 cells. However, we
observed that both NECA and Cl-IB-MECA, at certain concentrations, induced an increase of cyclic AMP production in non-transfected COS-7
cells, suggesting the presence of an endogenous Gs-coupled adenosine receptor, possibly the A2B adenosine receptor. In
the same cell line, Cl-IB-MECA had no effect on basal phosphoinositide turnover. Hence, to avoid interference by endogenous receptors, together with the fact that forskolin-stimulated adenylyl cyclase activity was only partly inhibited by A3 receptor agonists
as demonstrated elsewhere (36), the PLC assay was used in the
determination of functional coupling of the WT and mutant receptors.
Fig. 6 demonstrated that
Cl-IB-MECA induced accumulation of inositol phosphates in COS-7 cells
expressing WT receptors in a concentration-dependent
manner, with an EC50 of 260 ± 49 nM (n = 3). The H95A mutation did not influence the
production of inositol phosphates significantly (EC50 = 224 ± 57 nM; n = 3) (p > 0.05 compared with WT). In contrast, no
substantial stimulation of phosphoinositide turnover by Cl-IB-MECA was
observed in COS-7 cells expressing W243A, W243F, and N250A mutant
receptors. In the case of the L244A mutant receptor, Cl-IB-MECA could
still stimulate PLC activity but with 36-fold decreased potency
(EC50 = 9430 ± 2470 nM; n = 3). No enhancement in basal PLC activity was observed for these
mutant receptors.
Effects of a Guanine Nucleotide, GTP
A GTP-induced shift of agonist competition for radiolabeled antagonist
is another indicator of functional coupling between a receptor and G
protein. In this study, we further observed the effect of GTP Molecular Modeling--
Recently a human A3 receptor
model, including the seven transmembrane helical domains (TMs) and EL2,
has been constructed (21) in homology to the x-ray structure of bovine
rhodopsin (15). The model was used primarily to rationalize the
observed effects of the replacement of residue His272
(7.43) by glutamate on the receptor affinity toward A3
agonists and antagonists. Through docking of the A3
agonists and antagonists, we have initially defined the ligand binding
environment to include side chains of residues Thr94
(3.36), His95 (3.37), Ser247 (6.52),
Gln167 and Lys152 (EL2), and Ser271
(7.42) and Asn274 (7.45), and we suggested differences in
the accommodation of agonists bearing different
N6 substituents. Thus, although the
N6 moiety of CADO was located within H-bonding
distance from the amide oxygen of Trp243 and O
In the present study ligand accommodation in the A3-binding
site was further examined by modeling adducts of the various agonists and antagonists (Table I) with mutant receptors carrying residue replacements at the putative binding site. The results indicated that
although the overall positioning of the ligands within the A3 helical bundle was consistent with pharmacological
findings, the orientation of the adenine moiety with respect to TM3 and TM6 had to be adjusted. In the modified models of
A3-agonist complexes the N6 moiety
interacted with Asn250 instead of Ser247,
tilting the adenine ring away from the indole moiety of
Trp243. This adjustment did not seem to affect the relative
positions of the ribose (or the methanocarba (24)) moieties of the
different agonists. Fig. 8 shows a
molecular model of the human A3 adenosine receptor complex
with the nonselective antagonist CGS15943, which is located in
proximity to both Trp243 and His95, of which
mutation reduced antagonist affinity.
The effects of replacement of His95 were consistent with
the model with the imidazole moiety adjacent to the 2-position of the agonist adenine ring. Yet, the interaction seemed to depend upon the
precise juxtaposition of the ligand, because affinity of the H95A
receptor toward I-AB-MECA was only 3-fold lower compared with that of
the WT receptor, whereas for NECA the ratio was 14-fold. Although both
ligands lacked substitution at the 2-position, I-AB-MECA was shifted
toward TM5 (relative to NECA) and therefore its adenine ring was
further removed from the residue at position 95. Whereas the 100-fold
affinity decrease of the H95A receptor toward CADO could be attributed
to interaction with the 2-chloro substituent, comparison of the
relative affinities of MRS1898 and MRS1939 did not support such a
conclusion (Table II). In addition, the
2-chloro substituent did not seem to contribute to the affinity of
either MRS1898 or of Cl-IB-MECA toward the A3 receptor
(Table II). Thus, although the model could accommodate small
substituents at the 2-position of the adenine ring, the specific role
of the 2-chloro substituent, which appeared in many of the
A3 agonists, in binding to the receptor remains
unclear.
In this study we used a combination of mutagenesis, radioligand
binding, functional activity (PLC), and molecular modeling approaches
in order to identify residues important for ligand recognition in the
human A3 adenosine receptor. A change in the binding
affinity due to a mutation can be due to an indirect effect on receptor
structure and does not necessarily prove that the residue in question
directly interacts with the ligand.
The most deleterious of the mutations with respect to binding affinity
and functional potency was N250A (6.55), indicating that
Asn250 is crucially involved in either human A3
adenosine receptor-ligand recognition or in maintaining receptor
structure. This asparagine residue is conserved among all four subtypes
of adenosine receptors and a variety of other G protein-coupled
receptors. Consistent with the present result, the mutation of the
corresponding residue in the human A2A adenosine receptor
(N253A) also caused a drastic decrease of the affinity for both
agonists and antagonists (18).
Although less critically required for ligand binding,
His95 (3, 37) contributed significantly to the binding of
most ligands tested in the present study. In A1 adenosine
receptors (the residue at the homologous position is Gln), the mutation
(Q92A) also demonstrated its critical role in ligand recognition (34).
However, in the human A2A adenosine receptor, the mutation
of the corresponding residue into Ala (Q89A) increased both agonist and
antagonist affinity (33). Similar to the results obtained here, Perlman et al. (37) have demonstrated in a site-directed mutagenesis study that the mutation of the corresponding residue in murine thyrotropin-releasing hormone receptor (N110A) also decreased agonist binding. Similar results have also been reported in a study of
human D2 dopamine receptors, in which the antagonist binding affinity was significantly diminished after the mutation of the
corresponding residue (T119C) (38).
Interestingly, we have identified a mutant receptor W243A (6.48) that
bound agonist strongly but was functionally inactive. The function of
this conserved residue has been extensively studied in a variety of G
protein-coupled receptors, and it is suggested that this residue plays
a subtle role in receptor binding and activation. The importance of
this Trp residue in GPCR function was first emphasized by the study of
its effects in rhodopsin, in which this residue forms part of the
retinal-binding pocket (39). In contrast to the results obtained here,
the mutation of the equivalent Trp residue in the mouse The major consequence of the W243A and W243F mutations was functional
inactivation of the A3 receptor, indicating that
Trp243 may play a pivotal role in receptor transduction of
the signal. The diminished effects of a guanine nucleotide on agonist
binding in the Trp243 mutant receptors indicated impairment
of the coupling of the receptor to G protein. Activation of GPCRs
involves positive heterotropic, long range interactions between
agonist- and G protein-binding sites, and several lines of evidence
suggested that the movements of TM6 were critical in this process
(43-45). Molecular modeling suggested that the Trp243 was
in the binding pocket, where it might occupy a strategic position and
might act as a switch in TM6-mediated structural transition from the
resting to active state. It is possible that the replacement of this
residue with Ala or Phe left the switch in the "off"
position, resulting in functional inactivation and uncoupling. The
result also suggested that this conserved Trp residue did not play the
same role in agonist binding and receptor activation.
A recent study (46) demonstrated that the W256A mutation of the
homologous residue in the human B2 bradykinin receptor
resulted in a marked decrease of the affinity of nonpeptide antagonists but not agonists, which is in fair agreement with the present study.
These results suggested that this conserved residue might be
specifically involved in antagonist recognition in some GPCRs. By
comparison, mutation of residue Leu244 (at a neighboring
position to Trp243) to Ala did not influence the antagonist
binding. These insights may prove useful in future efforts to design
A3 receptor antagonists by a rational approach.
In the present study, the mutation of the serine residue (S247A) in the
TM6 of the human A3 adenosine receptor did not influence agonist binding and only slightly affected antagonist binding, which is
consistent with the results from the mutagenesis study of the bovine
A1 adenosine receptor. The mutation of the corresponding residue (H251L) diminished antagonist binding ~4-fold, but agonist binding was essentially not affected (47). This result was also consonant with the results of mutation of the corresponding residue (H265A) in the human NK1 receptor, which decreased antagonist binding
but did not affect the agonist binding (48). In contrast to these
results, the corresponding H250A mutation in the human A2A
receptor diminished agonist and antagonist binding as well as receptor
activation (18). In rat m3 muscarinic receptors, the binding of agonist
and antagonist was also impaired by the homologous N507A mutation (49).
Similarly, in the m3 receptor, the agonist binding was decreased after
the homologous R283A mutation in the murine thyrotropin-releasing
hormone receptor (42). These results suggested that the residue
at this position contributed unequally in different receptors. It was
also further suggested that different receptor subtypes or different
receptors might have quite specific structural and functional characteristics.
It is interesting that the H95A mutation impaired agonist binding but
not agonist-induced receptor activation, whereas the W243A mutation
impaired functional coupling but did not diminish agonist affinity. The
mutation of residue Leu244 (adjacent to Trp243)
to Ala resulted in nearly the same agonist binding affinity as that of
the WT receptor, but the activation was only partly impaired, also
suggesting the involvement in the receptor activation process. Clearly
these residues contribute differently to ligand binding and receptor
activation processes.
In the modified models of A3-agonist complexes the ligands
did not interact directly with residue Trp243. Yet this
residue is essential for receptor activation, suggesting that binding
of agonist may induce reorientation of its side chain accompanying the
receptor transition from an inactive to an active state. Unlike the
case of agonists, residue Trp243 seemed to participate in
accommodation of antagonists, apparently through aromatic- aromatic
interactions. This conclusion was based upon the differential effect on
affinity toward antagonists upon replacement of Trp243 with
Phe and Ala (Table I). According to the data from mutagenesis and from
molecular modeling, the binding sites of A3 agonists and
antagonists mostly overlap. Thus, the lack of participation of
Trp243 in agonist binding probably resulted from a
different size and nature of the adenine ring as compared with the
aromatic systems of the antagonists. According to the models, these
differences seemed to account also for a better interaction of
antagonists with residue His95 and with
Lys152.
The models of A3-ligand complexes suggested that motion of
the Trp243 side chain may be one of the primary molecular
events taking place upon ligand binding. In the inactive (dark)
conformation of rhodopsin the side chain of the analogous
Trp256 was oriented along the TM6 helical axis and
interacted with the ring moiety of retinal. If the Trp243
side chain were to adopt a somewhat similar orientation in the free
A3 receptor, its C In conclusion, the binding modes of nucleoside agonists and
non-nucleoside antagonists at human A3 receptors are
different. Residues needed for antagonist but not agonist binding
include Tyr243 (6.48) and Lys152 (EL2). Residues needed for both
antagonist and agonist binding include His95 (3.37), His272 (7.43), and
Asn250 (6.55), which is critical. Furthermore, it is possible to
separate the structural bases for binding and activation processes.
Trp243 is required for activation of the receptor but not for binding of agonists.
We thank Dr. Neli Melman (NIDDK) for
assistance in radioligand binding assays. We thank Dr. Ad
IJzerman (Leiden/Amsterdam Center for Drug Research, Leiden, The
Netherlands) for the gift of
4-methoxy-N-[3-(2-pyridinyl)-1-isoquinolinyl]benzamide,
Dr. Kyeong Lee (NIDDK) for preparing MRS1898, and Dr. Bruce Liang (University of Pennsylvania, Philadelphia, PA) for helpful discussions. Proofreading and graphics by Kelly Soltysiak (NIDDK) is appreciated.
*
The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
Supported by Gilead Sciences, Foster City, CA.
¶
On leave from the Israel Institute for Biological Research,
Ness Ziona, Israel.
**
To whom correspondence should be addressed: Molecular Recognition
Section, Laboratory of Bioorganic Chemistry, NIDDK, National Institutes
of Health, Bldg. 8A, Rm. B1A-19, Bethesda, MD 20892-0810. Tel.:
301-496-9024; Fax: 301-480-8422; E-mail: kajacobs@helix.nih.gov.
Published, JBC Papers in Press, March 12, 2002, DOI 10.1074/jbc.M110960200
1
The abbreviations used are: GPCR, G
protein-coupled receptor; AB-MECA,
N6-(4-aminobenzyl)-5'-N-methylcarboxamidoadenosine;
ADA, adenosine deaminase; CADO, 2-chloroadenosine; CGS15943,
5-amino-9-chloro-2-(2-furyl)-1,2,4-triazolo[1,5-c]quinazoline; Cl-IB-MECA, 2- chloro-N6-(3-iodobenzyl)-5'-N-methylcarbamoyladenosine;
GTP
Identification by Site-directed Mutagenesis of
Residues Involved in Ligand Recognition and Activation of the
Human A3 Adenosine Receptor*
§,
,
§¶,
,
, and
**
Molecular Recognition Section, Laboratory of
Bioorganic Chemistry, NIDDK, National Institutes of Health,
Bethesda, Maryland 20892 and
Pharmaceutical Institute,
University of Bonn, Kreuzbergweg 26, D-53115 Bonn, Germany
![]()
ABSTRACT
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
-thiotriphosphate than in WT. Thus, although not important
for agonist binding, Trp243 was critical for receptor
activation. The results were interpreted using a
rhodopsin-based model of ligand-A3 receptor interactions.
![]()
INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
(2, 7).
The activation of the A3 adenosine receptor is also
suggested to be involved in immunosuppression (8) and in the response
to ischemia of the brain (9, 10) and heart (11). It is becoming
increasingly apparent that agonists or antagonists of A3
adenosine receptors have potential as therapeutic agents for the
treatment of ischemic and inflammatory diseases (5, 8).

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Fig. 1.
Heptahelical diagram of the human
A3 adenosine receptor. The putative transmembrane
domains were modified according to the high resolution rhodopsin model
(15). Amino acids mutated in the present study are circled.
Residues 286-295 correspond to an extra helical domain in rhodopsin,
which is discontinuous from TM7.
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EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
S were from Sigma. MRS1898 was synthesized
as described previously (24). All the enzymes used in this study were
obtained from New England Biolabs (Beverly, MA).
QuikChangeTM site-directed mutagenesis kit was purchased
from Stratagene (La Jolla, CA). A monoclonal antibody (12CA5)
against a hemagglutinin epitope and adenosine deaminase (ADA) were
obtained from Roche Diagnostics (Indianapolis, IN), and goat anti-mouse
IgG antibody conjugated with horseradish peroxidase was from Sigma.
6) were grown in 100-mm
cell culture dishes containing Dulbecco's modified Eagle's medium
supplemented with 10% fetal bovine serum, 100 units/ml penicillin, 100 µg/ml streptomycin, and 2 µmol/ml glutamine. After 24 h, cells
were washed with phosphate-buffered saline (with calcium) and then
transfected with plasmid DNA (10 µg/dish) using the DEAE-dextran
method (26) for 1 h. The cells were then treated with 100 µM chloroquine for 3 h in culture medium and
cultured for an additional 48 h at 37 °C and 5%
CO2.
80 °C in aliquots. The
protein concentration was determined by using the method of Bradford
(27).
-counter.
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RESULTS
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

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Fig. 2.
Sequence alignments of selected regions of
A3 adenosine receptors and other G protein-coupled
receptors. Residues mutated in this study are shown in
boldface type. The standardized numbering system of van Rhee
and Jacobson (25) was used to identify residues in the transmembrane
domains (TMs) of various receptors. Each residue is
identified by two numbers; the first corresponds to the TM in which it
is located; the second indicates its position relative to the most
conserved residue in that helix, arbitrarily assigned to 50. For
example, H3.37 is the histidine in TM3, located 13 residues before the
most conserved arginine R3.50; W6.48 corresponds to
Trp243.

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Fig. 3.
Chemical structures of ligands tested
in this study.

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Fig. 4.
Effects of mutations in TM3, TM6, and EL2 on
the binding of A3 agonist Cl-IB-MECA. The agonist
radioligand [125I]I-AB-MECA (1.0 nM) was used
in the experiment. The data shown are from a representative example out
of at least three independent experiments performed in duplicate.
Affinities of various agonists and antagonists in binding experiments
at WT and mutant human A3 adenosine receptors
-D-ribofuronamide, was also not affected by mutation
of Trp243. The Kd value for
[125I]I-AB-MECA and Ki values for
other agonists were summarized in Table I.

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Fig. 5.
Effects of the Trp mutation on the binding of
A3 antagonist MRS1220. The agonist radioligand
[125I]I-AB-MECA (1.0 nM) was used in the
experiment. The data shown are from a representative example of at
least three independent experiments performed in duplicate.

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Fig. 6.
Cl-IB-MECA induced phosphoinositide turnover
in COS-7 cells expressing WT and mutant human A3 adenosine
receptors. Receptors were transiently expressed in COS-7 cells and
used 48 h after transfection. The data shown are from a
representative example of three independent experiments.
S, on Agonist
Binding--
To characterize further the interactions between WT and
mutant receptors and G proteins, we initially tried to do a membrane binding assay using [35S]GTP
S; however, the
signal-to-noise ratio was quite low. Hence, the ability of WT and W243A
and W243F mutant receptors to interact with G proteins was further
evaluated by measuring the effects of GTP
S on binding of the agonist
[125I]I-AB-MECA and on agonist Cl-IB-MECA competition for
[3H]PSB-11 binding in membranes of COS-7 cells expressing
WT and mutant receptors. As shown in Fig.
7, treatment with GTP
S reduced agonist
binding. The inhibitory effect of this GTP analogue on agonist binding
to W243A and W243F mutant receptors was less pronounced compared with
that of WT receptors, consistent with the impaired ability of these
mutant receptors to mediate inositol phosphate production in response
to an A3 agonist.

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Fig. 7.
Effects of GTP analogue on A3
receptor binding. Shown are the effects of increasing
concentrations of GTP
S on binding of the agonist radioligand
[125I]I-AB-MECA (1.0 nM) to membranes from
COS-7 cells expressing WT and mutant receptors. Results are expressed
as percent of binding determined in the absence of GTP
S and are
shown as means of values obtained from three experiments performed in
duplicate.
S on
the competition by agonist Cl-IB-MECA for binding of the antagonist
[3H]PSB-11 to WT and mutant receptors. The
Ki values for Cl-IB-MECA in the absence and presence
100 µM GTP
S were 2.5 ± 0.4 and 7.4 ± 1.1 nM, respectively, in WT receptors. In W243F mutant
receptors, the respective Ki values were 2.3 ± 0.2 and 3.2 ± 0.4 nM. Hence, the GTP analogue induced
a 3-fold affinity decrease of Cl-IB-MECA in WT receptors, whereas in
the W243F mutant receptor only a 1.4-fold decrease of affinity was observed, consistent with the impaired ability of agonist to activate PLC through this mutant receptor. In the case of the W243A mutant receptor, the agonist affinity shift could not be observed due to the
extremely low affinity of this mutant receptor for the antagonist
radioligand [3H]PSB-11.
of
Ser247 (2.76 Å and 2.51 Å, respectively), the
N6-benzyl substituent of IB-MECA appeared to
interact with residues Phe182, Ile186, and
Phe187 in TM5. The effect of this bulky
N6 substitution on the orientation of the bound
agonist was to displace the respective N6
substituent away from the amide oxygen of Trp243.
Consequently the 3'-hydroxy substituent of IB-MECA did not seem to
interact with His272, whereas such interactions could be
observed with the corresponding substituents of CADO or NECA. In
addition, the modeled interaction of the agonist
N6 moiety with O
Ser247 seemed
to orient the adenine ring for aromatic- aromatic interaction with the
indole moiety of Trp243. Although this model could be used
successfully to formalize the concept of neoceptor with respect to the
A3 receptor- agonist interaction (21), further
experimental evidence was needed especially for corroborating the
putative interactions of the adenine moiety of the agonists.

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Fig. 8.
Molecular model of the nonselective
antagonist CGS15943 binding to the human A3 adenosine
receptor. Residues in proximity to this triazoloquinazoline are
shown. Blue, nitrogen, red, oxygen,
green, chlorine.
Examination of the influence of 2-chloro substitution on the effects of
mutangenesis on agonist affinity
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DISCUSSION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
-opioid
receptor (40) impaired the binding of most ligands. In the rat
AT1A receptor, the mutation of the homologous residue
(W253A) decreased agonist but not antagonist binding (41). In rat m3
muscarinic receptor, the corresponding W503F mutation decreased both
agonist and antagonist binding; however, receptor activation was not
affected. Consistent with the present study, the mutation of the
corresponding residue in the murine thyrotropin-releasing
hormone receptor (W279A) did not affect agonist binding
(42).
2 would be within
interaction distance from His95. Upon binding, the
Trp243 side chain rotated out of the way of the incoming
ligand and assumed a new conformation to position the indole moiety
adjacent to Phe239. In this new conformation
Trp243 did not interact directly with agonists, yet the
aromatic-aromatic interaction with Phe239 may stabilize
the active conformation of the receptor.
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ACKNOWLEDGEMENTS
![]()
FOOTNOTES
S, guanosine 5'-
-thiotriophosphate; IB-MECA,
N6-(3-iodobenzyl)-5'-N-methylcarboxamidoadenosine;
MRS1939,
(1'R,2'R,3'S,4'R,5'S)-4-{6-[(3-iodophenylmethyl)amino]purin-9-yl}-1-(methylaminocarbonyl)bicyclo[3.1.0]hexane-2,3-diol; MRS1898,
(1'R,2'R,3'S,4'R,5'S)-4-{2-chloro-6-[(3-iodophenylmethyl)amino]purin-9-yl}-1-(methylaminocarbonyl)bicyclo[3.1.0]hexane-2,3-diol; MRS1220,
N-[9-chloro-2-(2-furanyl)[1,2,4]triazolo[1,5-c]quinazolin-5-yl]benzene-acetamide; NECA, 5'-N-ethylcarboxamidoadenosine; PSB-11,
8-ethyl-4-methyl-2-phenyl-(8R)-4,5,7,8-tetrahydro-1H-imidazo[2.1-i]purin-5-one; PLC, phospholipase C; WT, wild type; TM, transmembrane.
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REFERENCES
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ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
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