Originally published In Press as doi:10.1074/jbc.M202456200 on April 9, 2002
J. Biol. Chem., Vol. 277, Issue 24, 21610-21616, June 14, 2002
Evaluation of Critical Structural Elements of UDP-Sugar
Substrates and Certain Cysteine Residues of a Vertebrate Hyaluronan
Synthase*
Philip E.
Pummill and
Paul L.
DeAngelis
From the Department of Biochemistry and Molecular Biology, Oklahoma
Center for Medical Glycobiology, University of Oklahoma Health
Sciences Center, Oklahoma City, Oklahoma 73104
Received for publication, March 13, 2002
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ABSTRACT |
The hyaluronan (HA) synthases catalyze the
addition of two different monosaccharides from UDP-sugar substrates to
the linear heteropolysaccharide chain. To accomplish this task, the HA
synthases must be able to bind and to transfer from both UDP-sugar
substrates. Until now, it has been impossible to distinguish between
these two abilities. We have created a mutant of xlHAS1, a HA synthase from Xenopus laevis, that allows for the
examination of the enzyme's ability to bind substrate only. The
ability of different compounds to protect the xlHAS1(C337S) mutant
enzyme from loss of activity due to treatment with N-ethylmaleimide, a
cysteine-modifying reagent, yields information on the relative affinity
of a variety of nucleotides and nucleotide-sugars. We have observed
that the substrate binding selectivity is more relaxed than the
specificity of catalytic transfer. The only attribute that appears to
be absolutely required for binding is a nucleotide containing two
phosphates complexed with magnesium ion. The role of certain cysteine
residues in catalysis was also evaluated. Cys307 of xlHAS1
may play a role in catalysis or in maintaining structure. Mutation of
Cys337 raises the UDP-GlcUA Michaelis constant
(Km), suggesting that this residue participates in
UDP-GlcUA substrate binding or in catalytic complex formation.
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INTRODUCTION |
HA1 is a
glycosaminoglycan composed of alternating repeats of the disaccharide
(
4)-
-D-GlcUA(
3)-
-D-GlcNAc(1
).
This polysaccharide is abundant in vertebrates, where it plays
structural, recognition, and signaling roles (1). The enzymes that
catalyze the formation of HA, the HA synthases, are dual action
glycosyltransferases that catalyze the transfer of both GlcUA and
GlcNAc (2, 3). These membrane-associated enzymes utilize UDP-linked
sugar precursors. We have reported previously that xlHAS1 is highly
specific for the authentic HA substrates, UDP-GlcUA and
UDP-GlcNAc; the C4 epimers or UDP-glucose will not support HA
biosynthesis (4).
The vertebrate, the streptococcal, and the viral enzymes are comparable
in size and have regions or short sequence elements with considerable
similarity (2). A few of these putative elements (e.g. the
DXD-containing motif) are similar to other
glycosyltransferases that produce various
- or
-linked
polysaccharides from UDP-sugars (5-7). However, the exact roles of
these motifs in the structure and/or the function of the polypeptide
have only recently been investigated. In view of the close amino acid
sequence similarities among many glycosyltransferases, it is quite
likely that these residues are involved in binding common determinants
of UDP-sugars (e.g. uridine ring, phosphate groups) and/or
catalyzing the transfer of sugar residues.
X-ray crystal structures have been obtained for several different
glycosyltransferases from bacteria, a bacteriophage, and vertebrates
that utilize UDP-sugars as well as for a bacterial UDP-glucose
dehydrogenase (8-18). All of these structures show extensive
hydrophobic interactions with the uracil ring and hydrogen bonding with
the functional groups of the uracil as well as with the ribose
hydroxyls and phosphates (Table I). Many
of these transferases use the DXD motif to coordinate the
divalent metal cation and interact with the phosphate groups of UDP
(5-7, 14-16). In lieu of a three-dimensional structure or active-site
labeling data, the direct measurement or analysis of the binding of
substrates to glycosyltransferases is often quite difficult or even
impossible due to the low relative affinity of nucleotide-sugars for
the enzymes. For example, the Km value of xlHAS1 for
UDP-sugars ranges from ~100 µM to almost 1 mM, depending on experimental conditions (Ref. 4; Table
II). Direct binding assays would require any washing steps removing
unbound substrate to be completed in a few seconds' time. Equilibrium
dialysis experiments would require long times (which can be problematic
for labile UDP-sugars) and yield relatively weak signals.
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Table I
Polypeptide-substrate contacts in enzymes utilizing UDP-sugars
The residues reported to make distinct interactions with the nucleotide
portion of the substrate based on X-ray crystallography and the nature
of the protein/substrate interaction are listed for eight different
enzymes that utilize UDP-sugars. The enzymes are numbered as follows:
1, B. subtilis SpsA (7,8); 2, bacteriophage T4
-glucosyltransferase (9-11); 3, bovine 1,4-galactosyltransferase
T1 (12,13); 4, bovine 1,3-galactosyltransferase (14); 5, Neisseria meningitidis LgtC galactosyltransferase (15); 6, human 1,3-glucuronyltransferase I (16); 7, rabbit
N-acetylglucosaminyltransferase I (17); and 8, Streptococcus pyogenes UDP-glucose dehydrogenase (18).
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The situation is further complicated by the extreme difficulty in
purifying the vertebrate HASs in a native state; most binding assessments should be performed on enriched or purified membrane preparations, because many other nucleotide-binding proteins exist. Therefore, we employed an indirect method, utilizing protection from
inactivation mediated by a chemical modification agent, NEM, to assess
the relative affinity of a vertebrate HAS for a wide range of
compounds. These molecules have some or most of the structural elements
of the authentic UDP-sugars for HA biosynthesis. Our assumption is that
a compound interacting with the substrate-binding pocket or cleft will
block NEM's access to the site and protect the enzyme from chemical
modification and subsequent inactivation. We found that some structural
elements of the UDP-sugar substrates, including the two phosphate
groups, are critical for binding to xlHAS1. However, we have also found
that some compounds with variations in the sugar, base, or ribose can
bind to xlHAS1 at a putative substrate-binding site but do not support
HA biosynthesis. This observation indicates that the substrate-binding
requirements of the enzyme are more relaxed than the catalytic
requirements. Protection experiments suggest that one or more cysteines
might be part of or close to a putative substrate-binding site. We also found that several cysteines of xlHAS1 were dispensable, but
Cys307 may play a direct or a structural role.
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EXPERIMENTAL PROCEDURES |
Production of Recombinant xlHAS1 Wild Type and Cysteine Mutant
Enzymes--
All reagents were from Sigma or Fisher unless noted
otherwise. The construction and the use of the xlHAS1 expression
plasmid for studies in yeast were previously described (4, 19).
Basically, the xlHAS1 polypeptide was cloned into the pYES2 vector
(Invitrogen) under control of the GAL1 promoter to form pYES/DG+.
Site-directed mutagenesis was performed on pYES/DG+ using the
QuikChangeTM kit (Stratagene). Seven cysteine codons were altered
using pairs of synthetic oligonucleotides containing either the
partially degenerate codon (TYS, where Y represents C or T and S
represents G or C) or the serine codon (TCT) to obtain a variety of
mutants. Plasmids derived from independent transformants were sequenced
to verify the presence of mutations at the various cysteine codons. The entire open reading frame of each mutant was also verified by sequencing. The following mutants were generated: C117F, C117L, C117S,
C210S, C239S, C298F, C298L, C298S, C304S, C307S, C337S, C239S/C337S,
C304S/C337S, and C307S/C337S. The plasmids were transformed into
Saccharomyces cerevisiae BJ5461 yeast (a pleiotrophic
protease-deficient strain; Yeast Genetic Stock Center, Berkeley, CA) by
the lithium acetate/poly(ethylene glycol) method (20).
Yeast with recombinant plasmids were routinely grown to a suitable
biomass in uracil-deficient synthetic media with 0.1% glucose and 5%
glycerol until A600 was 0.3. Upon induction with
galactose (1% final concentration), xlHAS1 wild type or mutant enzyme
accumulated in the plasma membrane fraction. Crude membranes were
prepared by disruption with silica/zirconia beads (0.5 mm) in a
MiniBead-Beater-8 (Biospec) and harvested by ultracentrifugation. The
membrane pellet was suspended in 50 mM Tris, pH 7.5, 0.1 mM EDTA, 1 µM E-64, 1 mM
benzamidine, 0.2 mM 4-(2-aminoethyl)-benzenesulfonyl
fluoride, and 5 µg/ml pepstatin. Protein was quantitated by the
Coomassie dye-binding assay (Pierce) using a bovine serum albumin
standard (21).
Polysaccharide Synthase Assays and Analyses--
The
incorporation of sugars into high molecular weight HA polysaccharide
was monitored using UDP-[14C]GlcUA (~290 mCi/mmol;
PerkinElmer Life Sciences) and/or UDP-[3H]GlcNAc (29.2 Ci/mmol; PerkinElmer Life Sciences) precursors as described previously
(4, 19). Briefly, crude membranes were incubated at 30 °C in Tris
buffer, pH 7.5, with MgCl2 and the UDP-sugar precursors.
Unincorporated, labeled UDP-sugars were separated from the HA product
using paper chromatography. HA at the origin of the paper strip was
detected by liquid scintillation counting. Assays were set so that
<5% of the radiolabeled substrate was consumed, and the enzyme
concentration was in the linear range. All HAS assays throughout this
work were performed in duplicate, and the values were averaged.
The apparent Km values for the substrates were
obtained by holding one radiolabeled UDP-sugar at a constant and
saturating concentration while titrating the other UDP-sugar. The
apparent Ki values (concentration of inhibitor
required to reduce activity by 50%) of various compounds were obtained
by determining the HAS activity in the presence of varying
concentrations of the inhibitory compounds.
Chemical Modification and Enzyme Protection--
For protection
experiments, the enzyme was first incubated with 200-1000
µM protecting compound on ice for 10 min. The enzyme was
then treated with 1 mM NEM at 15 °C (5-µl reaction
volume). After 15 min, the reaction mixtures were diluted to 50 µl
with dithiothreitol-containing buffer to quench any residual NEM, and then the residual HAS activity was determined.
For affinity experiments, the enzyme was treated with 1 mM
NEM at 15 °C in the absence or presence of increasing concentrations of a protecting compound. The apparent affinity values of various compounds for xlHAS1 were obtained indirectly by assessing their ability to protect the enzyme from chemical inactivation. The apparent
affinity values equal the concentration of protecting compound required
to yield 50% of the maximum protected activity. All kinetic data was
analyzed by graphing with rectangular hyperbola transformation in
Sigma-Plot (Jandel Scientific).
Immunochemical Detection of Polypeptides--
The xlHAS1 and
mutant proteins were quantitated by Western blot analysis for
assessment of the relative specific HAS activity. After SDS-PAGE
separation, the proteins in the gel were transferred to nitrocellulose
by semidry transfer. The blot was blocked with bovine serum albumin and
incubated with the primary reagent composed of serum (1:1,000) from
rabbits immunized with a fusion protein containing 1-166 residues of
xlHAS1 (gift of I. Dawid (22)). Protein A-alkaline phosphatase
detection with 5-bromo-4-chloro-3-indolyl phosphate and nitro blue
tetrazolium was used to visualize the immunoreactive bands.
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RESULTS |
Mutant Enzyme Expression and HAS Activity--
The importance of
some of the various cysteines in xlHAS1 that are conserved among many
class I HASs (bacterial, viral, and vertebrate) was assessed by
site-directed mutagenesis. The membrane preparations containing the
various enzymes were tested for enzyme expression and HAS activity. The
results are shown in Table II. The
cysteine to serine mutation was typically found to be the least
altering to protein expression and activity in comparison with
substitution with leucine or phenylalanine. The HAS-specific activity
varied slightly among cysteine to serine mutants except for enzymes
containing the C307S mutation. xlHAS1(C307S) and xlHAS1(C307S/C337S) were expressed at levels similar to that of wild type, but
xlHAS1(C307S) retained less than 10% of wild type activity, whereas
xlHAS1(C307S/C337S) had no detectable HAS activity. The
Km values were similar for all mutants except the
series with the C337S mutation; UDP-GlcUA binds with lower affinity to
these mutants as assessed by higher Km values (Table
II).
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Table II
Enzyme expression, HAS activity, and substrate affinity
Membrane preparations were tested for enzyme expression, HAS activity,
and substrate affinity (apparent Km) as described
under "Experimental Procedures." Protein expression and HAS
activity were categorized as follows: >50% of wild type (+++),
10-50% of wild type (++), 0.1-10% of wild type (+), or <0.1% of
wild type ( ). Constant precursor concentrations were 1.2 mM UDP-GlcUA for the UDP-GlcNAc Km
determination and 2.4 mM UDP-GlcNAc for the UDP-GlcUA
Km determination, unless noted otherwise by a
footnote. All data points were obtained in duplicate. S.D. values are
given for experiments performed at least three times.
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Loss of HAS Activity Due to NEM Modification--
In 1979, it was
reported that a cysteine-modifying reagent,
p-chloromercuribenzoate, inhibited the release of HA by
streptococcal HAS (23). We found that this reagent inactivated
xlHAS1-catalyzed polymerization of HA (data not shown). We tested the
effect of NEM, a more selective cysteine-modifying reagent, on the HAS
activity of the wild type and mutant enzymes. Membranes were incubated with varying concentrations of NEM, and the residual HAS activity was
determined. xlHAS1 wild type and all cysteine to serine mutants were
inactivated by low levels of NEM, retaining <10% of their HAS
activity after treatment with 200 µM NEM (Fig.
1 and data not shown). xlHAS1 mutants
containing the C337S mutation were slightly more resistant to
NEM-mediated loss of HAS activity, with IC50 values (the
concentrations of NEM that reduced the HAS activity by 50%) of ~75
µM NEM compared with ~35 µM NEM for all other mutants and wild type (Fig. 1 and data not shown). Results similar to wild type were obtained for xlHAS1(C307S) when more total
protein was used to accommodate the lower activity of this mutant (data
not shown).

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Fig. 1.
NEM effect on HAS activity. Membranes
containing wild-type xlHAS1 or assorted mutant enzymes (60 µg of
total protein) were incubated with varying concentrations of NEM for 15 min at 15 °C. The membranes were then diluted 10-fold into assay
buffer and assayed as described under "Experimental Procedures."
Results for representative mutants are shown. Solid circle,
wild type; solid diamond, C239S; solid triangle,
C304S; solid square, C337S; open diamond,
C239S/C337S; open triangle, C304S/C337S. The mutants
containing the C337S mutation are more resistant to NEM-mediated
inactivation relative to the enzymes with Cys337.
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Protection from Loss of HAS Activity Due to NEM
Modification--
To determine whether the authentic HA substrate
UDP-sugars, UDP-GlcUA and UDP-GlcNAc, could protect the wild-type and
mutant enzymes from loss of HAS activity due to NEM modification,
membranes were incubated with substrates before NEM treatment. If a
substrate binds to the active site, then NEM added later will be
excluded from the site, and the site's modification rate will be
decreased. The HAS activity was then determined and compared with the
activity of a parallel aliquot of enzyme not treated with NEM. When
preincubated with substrates, only xlHAS1(C337S) could be protected
from loss of HAS activity due to NEM. The modification of
Cys337 probably inactivates the enzyme by an indirect
mechanism, because the C337S mutant still retains HAS activity. This
mutant enzyme allows analysis of substrate binding characteristics,
because an "irrelevant" (i.e. nonprotectable)
inactivation pathway has been eliminated. The UDP-sugar protection
effect also required Mg2+, because no protection was
observed when 10 mM EDTA chelator was added instead of
Mg2+ (data not shown).
Certain other structurally related compounds also protected
xlHAS1(C337S) to various extents from NEM-mediated loss of HAS activity
(Table III). The protecting compounds
include several UDP-sugars, thymine-containing nucleotides, and other
nucleotide triphosphates. No nucleotide monophosphate protected the
enzyme from NEM-mediated loss of HAS activity (Table III and data not shown). The monosaccharides GlcUA and GlcNAc provided little protection (Table III).
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Table III
Nucleotide protection of xlHAS1 from NEM inactivation
Four independent sets of protection experiments are shown. Membranes
containing xlHAS1 (C337S) were incubated with 200 µM
(runs 1-3) or 1 mM (run 4) of the indicated substrate or
analog compound for 10 min on ice followed by treatment with 1 mM NEM for 15 min at 15 °C. The membranes were then
diluted 10-fold into assay buffer (containing 10 mM
dithiothreitol to quench the remaining NEM) and assayed as described
under "Experimental Procedures." The values (averaged duplicates)
indicate the percentage of HAS activity remaining compared to an
identical incubation performed without NEM (i.e. higher
percentage means better protection). Without protection under these
conditions, ~80-90% of the enzyme is inactivated by the NEM. The
best protectant in all cases is UDP-GlcNAc. At least slight protection
is observed for all pyrophosphate-containing nucleotides.
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The ability of some molecules to protect xlHAS1(C337S) from
NEM-mediated loss of HAS activity allowed for the investigation of the
enzyme's apparent affinities for the various compounds. Apparent
affinity values were determined by titrating the protectant and
measuring the residual HAS activity after NEM treatment. UDP-GlcNAc yielded the highest maximum protection, protecting ~60% of the HAS
activity observed in the control not treated with NEM (Fig. 2A). UDP-GalNAc, the C4
epimer, protected less than 20% of the control activity; therefore, no
apparent affinity value was obtained for this compound. The apparent
affinity values for all of the other compounds tested were about
10
4 M, except for UDP and UTP (Fig.
2B). Although UDP and UTP provided higher maximum protection
than many of the other compounds, xlHAS1(C337S) displayed ~10-fold
lower apparent affinity (~10
3 M) for UDP
and UTP. When UDP or UTP were included together with UDP-GlcNAc, an
apparent affinity value similar to that of UDP-GlcNAc alone
(~10
4 M) was obtained.

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Fig. 2.
Protecting compound affinities. Apparent
affinity values were determined for each compound by titrating in the
compound up to 3 mM prior to 1 mM NEM treatment
at 15 °C for 10 min. The membranes were then diluted 10-fold into
assay buffer (containing 10 mM dithiothreitol to quench the
remaining NEM) and assayed for HAS activity with 0.6 mM
UDP-GlcUA and 1.2 mM UDP-GlcNAc. Results are given as
percentage form of [(activity of NEM-treated, compound-protected
enzyme)/(activity of untreated control with the same amount of
compound)] [(activity of NEM-treated, unprotected
enzyme)/(activity of untreated control with no compound)]. Averages of
duplicate results from up to four independent experiments are shown
along with rectangular hyperbola curves. A, UDP-glucose
(solid triangle, solid line), UDP-galactose
(open triangle, dashed line), UDP-GlcUA
(solid square, solid line), UDP-GalUA (open
square, dashed line), UDP-GlcNAc (solid
diamond, solid line), and UDP-GalNAc (open
diamond, dashed line). B, UDP (solid
circle), UTP (solid square), UDP-GlcNAc (solid
diamond, solid line), equimolar UDP + UDP-GlcNAc
(open circle, dashed line), and equimolar UTP + UDP-GlcNAc (open square, dashed line). Although
the rectangular hyperbola curves for UDP or UTP gave a maximum
protection of ~40 or ~70% of control, respectively, the apparent
affinities were about 10-fold lower than that obtained for the other
compounds.
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Inhibition of HAS Activity--
The protection from NEM-mediated
inactivation observed with the added compounds is presumably due to the
compounds binding to the enzyme and shielding one or more cysteine
residues from NEM modification. This cysteine(s) is hypothesized to be
either part of or near a substrate-binding site. To test this
assumption of active site occupancy, the compounds were tested for
their ability to inhibit HAS activity (Table
IV). As shown in Fig.
3, many of the compounds that
protect xlHAS1(C337S) from NEM-mediated loss of HAS activity
(solid bars) also inhibit wild-type xlHAS1 (open
bars). Similar inhibition was observed with xlHAS1(C337S) (data
not shown). Apparent Ki values were determined at
two different substrate concentrations and are listed in Table IV. The
Ki values were higher when tested under the higher authentic substrate concentration conditions. Km
values of xlHAS1 were determined for both substrates in the presence of
UMP, UDP, and UDP-glucose (Table V).
Although UMP had little effect on the Km values,
both UDP and UDP-glucose raised the values considerably. There was
little effect on Vmax with any inhibitor.
Overall, these alterations in kinetics are the hallmark of competitive
inhibition.
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Table IV
Inhibition constants for uridine nucleotides
Apparent Ki values were determined for each compound
by titrating each compound (0-4.5 mM) into the standard
synthase assay; the Ki value equals the inhibitor
concentration required to give 50% inhibition. The results from two
independent experiments are shown. All compounds completely inhibited
HAS activity at elevated concentrations. Values were determined at low
substrate concentration (0.3 mM UDP-GlcUA and 0.6 mM UDP-GlcNAc) or at high substrate concentration (1.2 mM UDP-GlcUA and 2.4 mM UDP-GlcNAc).
Ki values increase with higher substrate
concentrations, indicating a competitive mode of inhibition. Exp.,
experiment.
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Fig. 3.
Comparison of Protection from NEM
inactivation versus inhibition of HAS activity.
For protection experiments, percentages of control activity for run 4 from Table III are represented graphically with solid bars.
For inhibition experiments, membranes containing xlHAS1 were assayed
with or without a 1 mM concentration of the indicated
compound in addition to 0.6 mM UDP-GlcUA and 1.2 mM UDP-GlcNAc. Open bars indicate the percentage
inhibition of HAS activity compared with the parallel reaction without
added compound. UDP-GlcNAc is the best protectant, but nucleotides with
at least two phosphates provide a moderate amount of protection.
*, authentic substrate is not applicable for inhibition study.
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Table V
Effect of various nucleotides on apparent substrate affinity
Apparent Km and Vmax values were
determined for xlHAS1 in the presence of 200 µM (Exp. 1)
or 300 µM (Exp. 2) of the indicated compound. The
constant UDP-sugar concentrations were 1.2 mM UDP-GlcUA for
the UDP-GlcNAc Km determination or 2.4 mM UDP-GlcNAc for the UDP-GlcUA Km
determination. Vmax values are in units of pmol of
sugar transferred/min. Exp., experiment.
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DISCUSSION |
During the final preparation of this manuscript, it was reported
that NEM inactivated HASs from group A and C Streptococcus (24, 25). These enzymes contain six and four cysteine residues, respectively. The xlHAS1 polypeptide has 19 cysteines; therefore, it is
not surprising that this enzyme is sensitive to treatment with NEM.
When xlHAS1 is treated with biotin-maleimide, the Western blot band
shifts to ~5 kDa larger (data not shown), indicating that there are
~10 free, readily available cysteines. xlHAS1 enzymes containing the
C337S mutation were slightly more resistant than wild type enzyme to
loss of HAS activity due to NEM, indicating that this residue is
responsible in part for the NEM-mediated loss of activity. There are
obviously other cysteine residues that are modified by NEM, since none
of the cysteine to serine mutants or double mutants tested thus far
were completely resistant to NEM-mediated loss of HAS activity.
The mutation of Cys337 to serine caused a large decrease in
the enzyme's apparent affinity for UDP-GlcUA (but not UDP-GlcNAc; Table II), suggesting that Cys337 is somehow involved in
the binding of UDP-GlcUA or in GlcUA transfer. This result indicates
that Cys337 is probably close to the substrate-binding or
catalytic site. The Cys337 residue, however, is probably
not buried in a substrate pocket or cleft, because UDP-sugars could not
protect the wild-type enzyme from NEM-mediated inactivation.
In a recent study on a rat glucosylceramide synthase, it was found that
Cys207 was the primary residue involved in the inactivation
by NEM (26). It has also been recently found that the C226S mutation in
the HAS from equisimilis (24) and the C225S mutation in the
HAS from pyogenes (25) caused a reduction of about 90 and
50%, respectively, in the HAS activity. Interestingly, based on
sequence alignments, these residues roughly correspond to
Cys307 in xlHAS1, which is conserved in all known class I
HASs. As shown in Table I, the C307S mutant lost almost all HAS
activity. A double mutant with C307S/C337S lost all measurable HAS
activity. This finding suggests that Cys307 plays a role in
substrate binding, catalysis, or enzyme folding; the latter explanation
may not be as likely due to the mutant xlHAS1 enzyme's proper membrane
localization and good expression level.
Although NEM inactivates the streptococcal HASs, it has been determined
that no cysteines are required for enzyme activity in these HASs (24,
25). Although it was speculated that one or more of these cysteines are
located in or near the active sites, the localization of the cysteines
to a substrate-binding site was not demonstrated by substrate
protection from inactivation. We show here that some of the 19 cysteines in xlHAS1 might be involved in substrate binding or
catalysis, based on kinetic and protection data. This involvement might
not be direct, but it is clear that loss or modification of some of
these cysteines has significant effects on the vertebrate enzyme's
ability to function as a HAS.
The fact that xlHAS1 is very specific for the substrates utilized in
the HAS reaction could be due to specificity at either the binding step
or the catalytic step; our results in this report indicate that the
latter is most likely. Table III and Fig. 3 show that many different
compounds are able to bind to the enzyme and protect it from
NEM-mediated loss of HAS activity. The protection observed with these
nonsubstrate compounds was usually lower than that observed with the
authentic UDP-sugar substrates (Table III). One of the most important
structural elements appears to be the pyrophosphate moiety because none
of the nucleotide monophosphates tested were able to protect the
enzyme. It appears that xlHAS1 is able to bind purine-containing
nucleotides (e.g. ATP, GDP) as well as many different
pyrimidine-containing nucleotide-sugars (e.g. UDP-glucose).
This finding suggests two potential hypotheses: (i) the enzyme can
accommodate these different shapes or (ii) the protection seen with
these compounds is primarily due to interactions with the phosphate
groups. Neither simple phosphate ion nor pyrophosphate ion, however,
were able to protect xlHAS1(C337S) from NEM-mediated loss of HAS
activity at a concentration of 1 mM (data not shown). This
lack of effectiveness could be due to (i) the charge state differences
among these various phosphate ions, (ii) the smaller size of these
compounds (i.e. less sterically hindered access to pocket or
cleft) allowing modification of cysteines that are normally protected
by other larger pyrophosphate-containing compounds, and/or (iii) a
requirement for important interactions with the nucleotide base.
Mg2+ was required for the protection phenomenon; thus, it
appears that the HAS enzyme binds a UDP-sugar-metal complex. As
mentioned earlier, the DXD-containing motif has been
implicated in coordination of the divalent metal cation and interaction
with the phosphate groups. All known class I HASs contain a
DXD-containing motif as described by Wiggins and Munro (27)
as well as an XDD motif similar to that seen in the putative
UDP-sugar transferase SpsA of Bacillus subtilis (7, 8). When
the first aspartate in DXD or the second aspartate in
XDD was mutated to glutamate in mouse HAS1, there was a 99%
or greater loss of HAS activity (28). These aspartate residues are
probably involved in interactions with Mg2+ and/or the
phosphate groups.
Recently, the crystal structure for SpsA with dTDP has been obtained
(8). This structure shows that SpsA is able to accommodate the methyl
group at position 5 of the pyrimidine ring. Although the substrate
specificity or transfer activity of SpsA has yet to be determined, it
is obvious that this protein has the ability to bind both dTDP and UDP
(7, 8). Our findings indicate that xlHAS1 cannot only accommodate a
methyl group at position 5 of the pyrimidine ring but also a bromine or
iodine atom at position 5 or a thiol at position 2. This suggests that
there are no intimate or essential interactions between xlHAS1 and
positions 2 and 5 of the pyrimidine ring. Interestingly, of the enzymes listed in Table I, only half show an interaction with the carbonyl at
position 2 of the uridine in the crystal structure. xlHAS1 may interact
with the nucleotide base primarily by the hydrophobic effect due to its
relatively promiscuous binding of nucleotides, as assessed by the
protection data.
When the two structures mentioned above for SpsA with different
nucleotides are compared, a shift in the contacts with the ribose ring
can be seen to accommodate the loss of the 2'-hydroxyl (7, 8). Since
xlHAS1 cannot only bind dTDP but also ddTTP, similar shifts are
probably made to accommodate the loss of either the 2'-hydroxyl or both
the 2'- and 3'-hydroxyls. The proteins shown in Table I interact with
the ribose hydroxyls, but the requirements and importance in catalysis
or binding are not known. In the case of xlHAS1, contacts with the
ribose hydroxyls may not be essential.
Many of the compounds that provide substantial protection from
NEM-mediated loss of HAS activity also appear to be competitive inhibitors of xlHAS1. The Ki values of these
inhibitors are higher in the presence of increased substrate
concentration (Table IV). UDP and UDP-glucose alter the
Km for the two HAS substrates but do not
significantly affect the Vmax (Table V);
these results are indications of competitive inhibition.
The apparent affinity obtained from Km studies is a
measure of both the enzyme's ability to bind the substrate as well as
its ability to catalyze the addition of the sugar to the growing HA
chain. The apparent affinity values for various nucleotides (obtained
from Fig. 2) are measurements of the ability of the enzyme to bind a
substrate analog without concern for catalytic ability. The protection
from NEM observed with all compounds is probably due to protection of
one or more cysteines at a putative substrate-binding site. The
UDP-GlcNAc binding site is the most likely candidate, because the most
protection was observed with this substrate. However, at this stage, it
is impossible to determine which particular cysteines are being
protected and whether the cysteines participate in catalysis in the
putative substrate-binding site.
In Fig. 3, dTDP, UDP, and thio-UDP show higher inhibition of xlHAS1 in
comparison with their protection ability. xlHAS1(C337S) was found to
have a much lower apparent affinity for UDP and UTP than for the
UDP-sugars (Fig. 2B). This result could be explained in
several ways, including (i) relative steric hindrance, (ii) multisite
inhibition, and/or (iii) allosteric regulation. As described below, we
believe the first two effects may be responsible, in part, for the
observed disparity.
First, it is possible that the lack of sugar moieties on these
nucleotides exposes one or more cysteines in a substrate-binding pocket, which are normally protected by UDP-sugars, to modification by
NEM. The different levels of maximal protection observed in Fig. 2
suggest that there may be variations in the number of cysteines protected by the different compounds. Specifically, it appears that at
least one cysteine is protected by the GlcNAc portion of the UDP-GlcNAc
molecule. This cysteine is not efficiently protected by any of the
other compounds, leading to lower maximal protection values observed
for all other compounds (Fig. 2). Interestingly, UDP-GalNAc gave the
lowest maximal protection, indicating that the position of the C4
hydroxyl is probably critical for efficient or high affinity UDP-GlcNAc binding.
A second potential explanation for higher inhibition than protection is
that nucleotides without sugar moieties may be able to bind to both
putative substrate-binding sites, thus competing with both substrates
simultaneously. This competition would explain the difference in
UDP-GlcNAc Km values observed with different
concentrations of UDP-GlcUA with xlHAS1 (Table II), streptococcal HASs
(29), and mouse HASs (30). The protection ability of the UDP-like
compounds, however, might be due to binding at only one of these sites
(probably the UDP-GlcNAc site), thus yielding a lower value in our NEM
modification experiments.
A third possible explanation for the observation of greater inhibition
compared with protection is allosteric regulation; a site distinct from
the catalytic sites would modulate polymerization upon binding UDP. HA
is extruded out of the cell once it is produced; therefore, it would be
difficult for the cell to determine the amount of HA produced directly.
However, UDP, the by-product of the HAS reaction, may serve as a
measure of synthesis rate or extent. Thus, the local UDP concentration
level near the synthase might serve as an internal indicator of the
amount of HA produced. However, the kinetics finding that UDP and UTP
act as competitive inhibitors does not support the solely allosteric
control hypothesis. The sensitivity of the vertebrate HASs to UDP may
be an adequate potential negative feedback loop to control synthesis
levels by a competitive mechanism.
No three-dimensional structure for any HAS is available; thus, the
direct contacts between substrate and enzyme are not known. Our work is
the first assessment of the critical elements of UDP-sugars required
for binding to any HAS. A flexible xlHAS1 binding pocket probably
interacts with the hydrophobic nucleotide base and a metal-complexed
pyrophosphate group. The identification of these critical elements of
the substrate may allow for the future design of HAS inhibitors to
curtail HA polymer production in certain disease states. Based on
sequence similarities, it is probable that the streptococcal and
vertebrate HASs interact with the same elements. Also, we have made
tentative assignments of the roles of two conserved cysteines found in
all vertebrate HASs. Further work on the details of the catalytic
mechanism should illuminate the nature of sugar transfer specificity.
 |
ACKNOWLEDGEMENTS |
We thank Dr. Ann Achyuthan for technical
assistance in creating several of the cysteine mutants and performing
some chemical modification trials. We also thank Tasha Arnett, Wei
Jing, and Carissa White for aid in performing the many synthase
activity assays and for comments on the manuscript.
 |
FOOTNOTES |
*
This work was supported by National Institutes of Health
Grant GM56497 (to P. L. D.).The costs of publication of this
article were defrayed in part by the
payment of page charges. The article must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
To whom correspondence should be addressed: Dept. of Biochemistry
and Molecular Biology, Oklahoma Center for Medical Glycobiology, University of Oklahoma Health Sciences Center, 940 Stanton L. Young
Blvd., Oklahoma City, OK 73104. Tel.: 405-271-2227; Fax: 405-271-3092;
E-mail: paul-deangelis@ouhsc.edu.
Published, JBC Papers in Press, April 9, 2002, DOI 10.1074/jbc.M202456200
 |
ABBREVIATIONS |
The abbreviations used are:
HA, hyaluronan, hyaluronate, or hyaluronic acid;
HAS, HA synthase;
NEM, N-ethylmaleimide.
 |
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