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J. Biol. Chem., Vol. 277, Issue 34, 31220-31227, August 23, 2002
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From the Institut de Chimie des Substances Naturelles, CNRS, Avenue
de la Terrasse, 91190 Gif-sur-Yvette, France
Received for publication, April 5, 2002, and in revised form, May 23, 2002
Iron regulatory proteins (IRPs) control iron
metabolism by specifically interacting with iron-responsive elements
(IREs) on mRNAs. Nitric oxide (NO) converts IRP-1 from a [4Fe-4S]
aconitase to a trans-regulatory protein through Fe-S
cluster disassembly. Here, we have focused on the fate of IRE binding
IRP1 from murine macrophages when NO flux stops. We show that virtually
all IRP-1 molecules from NO-producing cells dissociated from IRE and
recovered aconitase activity after re-assembling a [4Fe-4S] cluster
in vitro. The reverse change in IRP-1 activities also
occurred in intact cells no longer exposed to NO and did not require
de novo protein synthesis. Likewise, inhibition of
mitochondrial aconitase via NO-induced Fe-S cluster disassembly was
also reversed independently of protein translation after NO removal.
Our results provide the first evidence of Fe-S cluster repair of
NO-modified aconitases in mammalian cells. Moreover, we show that
reverse change in IRP-1 activities and repair of mitochondrial
aconitase activity depended on energized mitochondria. Finally, we
demonstrate that IRP-1 activation by NO was accompanied by both a
drastic decrease in ferritin levels and an increase in transferrin
receptor mRNA levels. However, although ferritin expression was
recovered upon IRP-1-IRE dissociation, expression of transferrin
receptor mRNA continued to rise for several hours after stopping NO flux.
In the early nineties, the notion that iron-sulfur cluster
proteins may play an important role in regulating gene expression began
to emerge (1). Iron regulatory protein 1 (IRP-1),1 which controls
intracellular iron homeostasis at a post-transcriptional level, is one
of the best illustrations. Once properly activated, IRP-1 specifically
binds to one or several iron-responsive element(s) (IRE) located in the
untranslated regions (UTRs) of several mRNAs, including those
encoding ferritin, mitochondrial aconitase, and transferrin receptor
(Tf-R). The binding of IRP-1 to IRE in the 5'-UTR of ferritin or
mitochondrial aconitase mRNA blocks its translation, whereas
binding of IRP-1 to at least three of the five IREs in the 3'-UTR of
Tf-R mRNA stabilizes it. Remarkably, IRP-1 is a bifunctional
protein that in resting cells displays a [4Fe-4S] cluster at the
active site and consequently exhibits an aconitase activity in the
cytosol. When cellular iron becomes limiting, cytosolic aconitase
activity disappears, whereas IRP-1 progressively gains the capacity to
bind IREs. A second IRP, named IRP-2, also binds to IRE motifs in
response to iron depletion but does not have aconitase activity because
of its incapacity to assemble an Fe-S cluster (for review, see Ref.
2).
It is now well known that nitric oxide (NO) can also modulate IRP-1 (3,
4). Moreover, several lines of evidence indicate that activation of
IRP-1 by NO is followed by repression of ferritin translation and an
increase in Tf-R mRNA levels (4, 5). In contrast to iron depletion,
NO quickly modulates IRP-1 activity at a post-translational level (6,
7). NO rapidly converts IRP-1 from aconitase to its
trans-regulatory form without requiring de novo
protein synthesis (6). Its primary target site is the Fe-S cluster,
because it has no effect on IRP-1 from cytosol that had been pretreated
with an excess of aconitase substrates (e.g. citrate or
cis-aconitate) known to interact directly with the labile
iron of the cluster (8, 9). Subsequently, electron paramagnetic
resonance studies have definitively established that NO promotes the
cluster disassembly of the protein (10). At this juncture, one of the
challenging issues ahead was to investigate the fate of the
trans-regulatory form of IRP-1 once NO flux stops. This
question addresses the still ill-defined cell machinery involved in
iron-sulfur cluster (ISC) assembly in mammals. Recent results using
yeast indicate that mitochondria are most probably the primary site of
the biogenesis of both mitochondrial and cytosolic Fe-S cluster
proteins (11-13). Yet in mammalian cells, components of the ISC
machinery have recently been characterized in extra-mitochondrial compartments (14, 15). Taking these recent data into consideration and
to understand better the impact of NO on proteins whose mRNAs are
under the control of the IRP/IRE system, we have investigated the
possible Fe-S cluster repair of NO-modified IRP-1 when NO flux stops.
In parallel, we have analyzed the consequences of this regulation for
ferritin and mitochondrial aconitase expression as well as Tf-R
mRNA level. In addition to IRP-1, we have also explored the fate of
the related mitochondrial Fe-S aconitase when cells were no longer
exposed to NO and studied the participation of energized mitochondria
in the recovery of their aconitase activity.
Materials--
Spermine NONOate (SPER/NO), DPTA NONOate
(DPTA/NO), and DETA NONOate (DETA/NO) were from Cayman Chemical (Ann
Arbor, MI). Cycloheximide (CHX), carbonyl cyanide
m-chlorophenylhydrazone (CCCP), LD-L 10 kit, and oligomycin
were from Sigma.
Cell Culture and Treatments--
The RAW 264.7 macrophage cell
line was cultured in high glucose Dulbecco's modified Eagle's medium
supplemented with 5% fetal bovine serum (Invitrogen). Cells were
incubated with different NONOates for the times indicated in the
figures and washed twice with phosphate-buffered saline. Cells were
then incubated in fresh medium alone or with medium that contained CHX
or CCCP as indicated in the figure legends. At the indicated times,
cell were harvested, and both cytosol and mitochondria-enriched
fractions were prepared. To determine the expression of Tf-R mRNA,
total RNAs were extracted in parallel experiments.
Preparation of Mitochondria-enriched Fraction--
RAW 264.7 cells (5 × 106/ml) were harvested and suspended in
0.25 M sucrose buffered by 100 mM HEPES, pH
7.4. They were then treated with 0.007% digitonin as described (16).
The mitochondria-enriched pellet was treated with a lysis buffer
composed of 100 mM Tris, pH 7.5, 0.5% Triton X-100, and 20 µg/ml phenylmethylsulfonyl fluoride. After 20 min on ice, the lysate
was centrifuged at 10,000 × g for 10 min at 4 °C,
and the supernatant was immediately tested for mitochondrial aconitase
activity and aliquots were kept at Preparation of Cytoplasmic Extracts--
RAW 264.7 cell
monolayer (5 × 106/ml) was harvested in 250 µl of
0.25 M sucrose buffered with 100 mM HEPES, pH
7.4. The cell suspension was then treated with 0.007% digitonin, and
the lysate was centrifuged at 1,800 × g for 10 min.
The resulting supernatant was then centrifuged at 100,000 × g for 1 h at 4 °C. The cytosolic extract was tested
for protein concentration (~1 mg/ml) before measuring aconitase
activity. No mitochondrial aconitase expression was detected by Western
blotting in the cytosolic fraction. Samples were then kept at
Preparation of RNA Transcripts--
Transcription reactions were
performed in vitro with 1 or 2 µg of either linearized
pSPT-TR 11 (corresponding to the 2.3-kilobase 3'-UTR of the human Tf-R)
or linearized pSPT-fer (corresponding to the human ferritin H-chain
IRE) (kindly provided by Dr. L. C. Kühn) in the presence of
60 µCi of [32P]CTP, 2.5 mM unlabeled NTP,
0.02 mM unlabeled CTP, 10 mM DTT, 20 units of
RNase inhibitor, and 20 units of T7 RNA polymerase in a final volume of
20 µl. Samples were incubated for 2 h at 38 °C. Full-length
transcripts from pSPT-TR11 were purified on Sephadex G50 column.
Electromobility Shift Assay--
RNA-protein interactions were
performed as described previously (17). Briefly, 2 µg of cytoplasmic
extracts were mixed with a molar excess of labeled H-chain ferritin IRE
in a final volume of 20 µl of 10 mM HEPES, pH 7.6, 40 mM KCl, 3 mM MgCl2, and 5% glycerol (buffer A). After 20 min of incubation at room temperature, 1 µl of RNase T1 (1 unit/µl) was added. After 10 min, 2 µl of 50 mg/ml heparin were added for an equivalent additional time. IRP-IRE
complexes were resolved in 6% nondenaturing polyacrylamide gels. In a
parallel experiment, samples were treated with 2% 2-mercaptoethanol (2-ME) before the addition of the labeled RNA probe. This treatment allows full expression of IRP-1 IRE binding activity. The IRP-1-IRE complex was quantified with ImageQuant software (Molecular Dynamics). RNA-protein interactions were also analyzed with a molar excess of
labeled 3'-UTR of the Tf-R, which contains 5 IRE sequences (TfR
5-IREs). The above-mentioned protocol was slightly modified for the
Tf-R probe; 10 µg of cytoplasmic extracts were used in a final volume
of 30 µl of buffer A. Incubation time for the Tf-R 3'-UTR-IRPs
interactions was 40 min. Four units of RNase T1 were then added for 20 min followed by 3 µl of 50 mg/ml heparin for 10 min.
Western Blot Analysis--
Ten micrograms of protein from
cytosolic extracts or 0.1 µg of purified mouse liver ferritin were
resolved on 12% SDS-polyacrylamide gel and transferred to
nitrocellulose membranes. The membranes were then blocked with gentle
agitation in 20 mM Tris-base, pH 7.5, 137 mM
NaCl, 0.1% Tween 20 buffer containing 5% fat-free dry milk at
37 °C for 1 h followed by an overnight incubation at 4 °C
with a purified mouse liver ferritin antiserum (kindly provided by Dr.
J. Brock, Glasgow University, Glasgow, UK). Membranes were then
washed and incubated with a peroxidase-conjugated goat anti-rabbit
secondary antibody (Amersham Biosciences) for 1 h at room
temperature. The immunoreactive bands were detected by using the
enhanced chemiluminescence Western blotting detection system Super
Signal (Pierce). To analyze the expression of mitochondrial aconitase,
we used an antibody raised against purified beef heart mitochondrial
aconitase and kindly provided by Dr. R. B. Franklin, University of
Maryland, Baltimore, MD. Concerning analysis of IRP-1 expression
levels, we used a chicken polyclonal antibody raised against purified
human recombinant IRP-1 (Agro-Bio, La Ferté Saint-Aubin, France).
Northern Blot Analysis--
Total RNA from RAW 264.7 macrophages
was extracted using the TRIzolTM reagent (Invitrogen).
Equal amounts of RNA (20 µg) were electrophoresed at 61 mV for 2-3 h
in a 1% agarose/formaldehyde gel and transferred to a positively
charged nylon membrane (Pall Corp. Ann Arbor, MI). After cross-linking
of the RNA to the membrane by UV light and prehybridization for at
least 1 h with Hybrizol I solution (Intergen Co., NY), membranes
were probed overnight with the 2.3-kilobase EcoRI fragment
of the murine Tf-R cDNA (kindly provided by Dr. L. C. Kühn, Swiss Institute for Experimental Cancer Research, Epalinges, Switzerland), which was labeled by the random hexamer priming method (Invitrogen). Blots were washed twice in 2× standard saline phosphate/EDTA (0.15 M NaCl/10 mM
phosphate, pH 7.4, 1 mM EDTA) for 15 min at room
temperature and then twice in 0.1× standard saline phosphate/EDTA at
55 °C for 15 min before exposing to phosphorimaging. Blots were also
re-probed with a 1.3-kilobase PstI fragment of
glyceraldehyde-3-phosphate dehydrogenase cDNA as a loading control
and washed as above except for the last two washes, which were
performed at 65 °C.
Aconitase Activity--
Mitochondrial and cytosolic aconitase
activities were determined spectrophotometrically at 240 nm by
following the disappearance of cis-aconitate, which is the
intermediate substrate of aconitases, at 37 °C. Fifty micrograms of
protein were used in 100 mM Tris-HCl, pH 7.4. Units
correspond to nmol of substrate consumed/min.
In Vitro Iron-Sulfur Cluster Reconstitution--
Reconstitution
of the [4Fe-4S] cluster in IRP-1 from control or IFN- Oxygen Consumption--
Oxygen consumption was measured with a
Clark-type oxygen electrode from Hansatech (Norfolk, UK). RAW 264.7 cells were cultured in high glucose Dulbecco's modified Eagle's
medium supplemented with 5% fetal bovine serum at 37 °C in 5%
CO2 humidified atmosphere and treated with the uncoupler of
oxidative phosphorylation CCCP for 6 h. Control or CCCP-treated
cells (10 × 106/ml) were harvested, washed twice with
the respiration buffer (25 mM HEPES, pH 7.2, 20 mM sucrose, 1.2 mM
KH2PO4, 118 mM NaCl, 4.8 mM KCl, 1 mM CaCl2), and then
centrifuged at 232 × g for 10 min. The cell pellet was
resuspended in 1 ml of pre-warmed respiration buffer and homogenized
with constant stirring in the respiration chamber at 37 °C during
measurements. During the oxygen consumption measurement, the
mitochondrial ATPase inhibitor oligomycin (10 µM) was
added to the chamber.
Measurement of Protein Synthesis--
Cells were cultivated with
various concentrations of CHX (250, 500, and 1000 ng/ml) in
leucine-starved Dulbecco's modified Eagle's medium for 30 min. Then
cells were pulse-labeled with 2 µCi/ml of
L-[3H]leucine for 2 h. After
incorporation of leucine, cells were washed 10 times and harvested in a
solution of 10% trichloroacetic acid. Samples were filtered under a
vacuum through a Whatman GF/B filter, and 100 µl of the filtrate were
used for measuring incorporated 3H radioactivity as
described previously (18). Cell viability was estimated by measuring
lactate dehydrogenase release using the LD-L 10 kit. We chose the
concentration of 1 µg/ml CHX, which completely blocked translation
without cell toxicity.
In Vitro Reconstitution of the [4Fe-4S] Cluster into IRE Binding
IRP-1 from NO-producing Macrophages--
We first investigated the
possible in vitro repair of the [4Fe-4S] cluster in IRE
binding IRP-1 from RAW macrophages previously stimulated by IFN- Change in IRP-1 Activities after Stopping Exposure of Cells to
Exogenous NO--
To investigate the change in IRP-1
structure/activities in intact cells when NO flux stops, we used
NONOates because of their predictable and various rates of NO release.
To activate IRP-1, we first exposed cells to three different NONOates,
SPER/NO, DPTA/NO, and DETA/NO. Under our experimental conditions, they
released NO linearly at different rates, 3-4, 1.5, and 0.4 µM/min, respectively. We showed that the fast
NO-releasing SPER/NO led to a rapid activation of IRP-1 within 2 h
(Fig. 2A, upper
row, compare lane 6 to lane 1). Aconitase
activity was strongly decreased, corresponding to 38% that of the
control (right panel of A). DPTA/NO triggered significant activation of IRP-1 within 4 h (Fig. 2B,
compare lane 5 to lane 1) with a remaining
aconitase activity of 22% of the control (right panel of
B). Finally, DETA/NO, whose rate of NO release is similar to
that of inducible NO synthase (20), allowed strong activation of IRP-1
within 16 h (Fig. 2C, compare lane 4 to
lane 1) and showed a remaining aconitase activity of 19% of
the control (right panel of C). After removing NO
donors by extensive washing, we measured both aconitase and IRE binding activities of IRP-1 at the indicated times. IRP-1-IRE binding activity
progressively decreased (Fig. 2, left panels) while the cells were recovering cytosolic aconitase activity (Fig. 2, right panels). This reverse change in IRP-1 was apparent within
the first hours after NO removal whatever the rate of NO release
previously generated to activate IRP-1. NO also inhibits mitochondrial
aconitase through disruption of its [4Fe-4S] cluster (10, 21).
Therefore, we also tested the possible restoration of its activity
under the same experimental conditions. Mitochondrial aconitase from NO-treated cells was quickly recovered after stopping NO flux (data not
shown).
To investigate whether resumption of IRP-1 and mitochondrial aconitase
activities requires de novo protein synthesis, CHX was added
to cell culture medium. As previously shown, a 16-h preincubation of
macrophages with DETA/NO was accompanied by loss of cytosolic aconitase
activity (5% of control, left panel of Fig.
3A) and a concomitant increase
in IRE binding capacity of IRP-1 (Fig. 3B, compare
lane 2 to lane 1). The addition of CHX after
washing away DETA/NO did not preclude the reappearance of cytosolic
aconitase activity, which reached the same level as CHX-untreated cells
(Fig. 3A, left panel). Interestingly, IRE binding
capacity of IRP-1 was more strongly decreased when protein synthesis
was blocked (Fig. 3B, compare lane 6 to
lane 4). Similar experiments using DPTA/NO as a source of NO
gave the same results (data not shown). The latter experiments
demonstrate that reversion of IRP-1 activities after shutting off NO
flux was not due to newly synthesized IRP-1 but was dependent on a
post-translational change of the NO-modified IRP-1 itself. We also
observed a rapid increase in mitochondrial aconitase activity, reaching
up to 70% of the control value 6 h after DETA/NO removal even in
the presence of CHX (Fig. 3, right panel of
A).
Effect of Mitochondria De-energization on IRP-1 and
Mitochondrial Aconitase Activity Repair--
Biosynthesis of
extra-mitochondrial Fe-S cluster proteins in yeast has been found to
depend on an ATP binding cassette (ABC) transporter located in the
inner membrane of mitochondria (22). Accordingly, we analyzed whether
the reverse change in IRP-1 activities as well as the activity repair
of the mitochondrial aconitase after DETA/NO removal required an
ATP-dependent mechanism from mitochondria. As described
above, DETA/NO was removed, and the cells were then treated with an
uncoupler of oxidative phosphorylation, CCCP. In a preliminary
experiment, we showed that it instantaneously de-energized
mitochondria. We then performed a time-course experiment to follow the
activity of both IRP-1 and mitochondrial aconitase. We showed that
recovery of aconitase activity was markedly delayed in the cytosol of
CCCP-treated cells as compared with untreated cells (left
panel of Fig. 4A, compare
the white bars to the black bars). Conversely,
the high IRE binding activity of IRP-1 resulting from the treatment by
DETA/NO remained elevated in CCCP-treated cells at least 6 h after
stopping NO flux (data not shown). Recovery of mitochondrial aconitase
activity was also delayed in CCCP-treated cells but to a lesser extent
(right panel of Fig. 4A, compare white
bars to black bars). In parallel experiments, the
uncoupler CCCP was tested for its efficiency on mitochondria
de-energization (Fig. 4B). Results show that CCCP was
effective during the a 6-h recovery phase, as indicated by the
unchanged oxygen consumption of CCCP-treated cells after inhibition of
ATP synthesis by oligomycin.
Recovery of Initial IRP-1 Activities Correlates with Resumption of
High Levels of Ferritin--
We investigated whether inactivation of
IRP-1 trans-regulatory activity was followed by a change in
expression of proteins whose mRNA contains an IRE sequence in their
5'-UTR. We first incubated RAW macrophages with DETA/NO for 16 h
and analyzed their cytosols for aconitase activity and IRE binding by
IRPs using the ferritin IRE as a probe. In parallel, we measured the
ferritin expression level. We showed that both down-regulation of
IRP-2-IRE binding and activation of IRP-1-IRE binding in
DETA/NO-treated cells resulted in severe reduction of ferritin
expression (Fig. 5). Six hours after NO
donor removal, loss of IRP-1 in its capacity to bind ferritin IRE was
directly correlated with resumption of ferritin translation (Fig.
5C, compare lane 4 to lane 2).
Noteworthy, loss of IRE binding activity of IRP-2 in response to NO was
not reversed after stopping NO flux. In parallel, the level of
mitochondrial aconitase, whose mRNA also has an IRE in its 5'-UTR
(23, 24), was measured. Despite activation of IRP-1 to bind IRE, the
level of this protein was not reduced in response to an overnight
stimulation by NO and remained unchanged 6 h after stopping NO
flux once IRP-1 was inactivated (Fig. 5C, lower
panel).
Resumption of IRP1 Activities and Consequences for Tf-R mRNA
Level--
Tf-R mRNA contains five IRE sequences in its 3'-UTR
(25). We therefore studied the regulation of its expression after the change in IRP-1 activities induced by the "on/off NO flux signal" described above. It is worth noting that in this set of experiments, IRP-1 and IRP-2-IRE binding capacity was assessed using the entire 3'-UTR that contained the five IRE sequences of the Tf-R as a probe. In
parallel to cytosolic extraction, total mRNAs were extracted and
analyzed for Tf-R expression. We first observed that the capacity of
IRP-2 to bind Tf-R IREs was not significantly modified in control and
DETA/NO-exposed cells (Fig.
6A, compare lane 2 to lane 1). In contrast, we observed that
exposure of macrophages to DETA/NO resulted in a strong increase in
IRP-1 binding capacity toward Tf-R IRE sequences that was accompanied
by an enhanced Tf-R mRNA expression (Fig. 6, panel A and
C). After 6 additional hours without DETA/NO, IRP-1 no
longer interacted with Tf-R IREs and recovered aconitase activity (Fig.
6A, compare lane 4 to lane 2, and
panel B), but surprisingly, this was not accompanied by a
decrease in Tf-R mRNA level. Actually, Tf-R mRNA expression
continued to increase even 10 h after exposure to NO was ended
(data not shown).
Whereas the mechanism of IRP-1 activation in response to NO has
been progressively disclosed, the inactivation process of IRP-1 when
cells are no longer exposed to NO has never been characterized. Investigating this pathway is crucial to understanding the real impact
of NO on proteins whose mRNAs contain the IRE motif(s). In this
report, we first showed that in addition to iron and DTT, sulfide was
required to ensure both IRP-1-IRE dissociation and recovery of
aconitase activity. As documented earlier by Kennedy et al.
(26), this observation strongly suggests that NO-modified IRP-1 from
activated macrophages is an apoprotein that can be readily reactivated
through repair and reinsertion of its [4Fe-4S] cluster.
Interestingly, we have observed that recovery of IRP-1 aconitase
activity also occurred in intact cells as soon as they were relieved of
the NO burden, whatever the time course and the rate of NO formerly
generated. Because recovery did not require de novo protein
synthesis, we propose that IRE binding IRP-1 could be recycled into an
aconitase through reassembly and reinsertion of the Fe-S cluster into
the backbone of the protein upon NO removal (Fig.
7). Along the same lines, we noticed that
the presence of a labile protein(s) may be necessary to keep the
IRP-1-IRE interaction, because the translation inhibitor cycloheximide
favored the IRP-1-IRE dissociation in cells relieved of NO (Fig.
3B). Taking into account this result, we are now seeking new
partner proteins and/or chaperones that could participate in the IRP-1
activation/deactivation process in response to the on/off NO flux
signal. We also investigated the repair activity of the related
mitochondrial aconitase after stopping NO exposure. This enzyme, whose
Fe-S cluster and in turn enzymatic activity are altered by NO (10, 18,
21), regained its function easily as soon as NO flux stopped without
requiring protein translation. Again, these in vivo
experiments point to a reinsertion of a fully assembled [4Fe-4S]
cluster into NO-modified mitochondrial aconitase. Altogether, our
results also indicate that cellular factors that participate in
aconitase recovery were left intact during NO exposure and were
therefore available to reconstitute IRP-1 and mitochondrial aconitase
initial functions once NO flux stopped.
It is now clear that Fe-S cluster formation and repair do not occur
spontaneously in vivo. In yeast and bacteria, the ISC (iron-sulfur cluster assembly)
machinery, which comprises some 10 specific proteins, is responsible
for both iron and elemental sulfur delivery and (re)assembly of Fe-S
clusters (11). Interestingly, it was recently reported that the ISC
machinery, in particular the NifS-like IscS protein, could efficiently
repair the NO-modified ferredoxin [2Fe-2S] cluster in
Escherichia coli (27). It is, thus, reasonable to assume
that the recently identified mammalian NifS-like proteins (14, 15, 28)
may participate in the Fe-S cluster repair of NO-modified IRP-1 and
mitochondrial aconitase. As previously mentioned, Kispal et
al. (22) also found that maturation of cytosolic Fe-S
cluster-containing proteins of Saccharomyces cerevisiae
depends on an ABC transporter, named Atm1p, located in the inner
membrane of mitochondria. It has been reported that this transporter
exports Fe-S clusters previously constituted in the matrix of
mitochondria to the cytosolic compartment. Importantly, a mitochondrial
ABC transporter named ABC7 has also been identified in mouse and human
as the functional orthologue of yeast Atm1p (29-32). In humans,
mutation of the ABC7 gene causes X-linked sideroblastic anemia with
cerebellar ataxia. The ABC7 ATP binding domain faces the mitochondrial
matrix. It is therefore relevant to investigate the role of
energized-mitochondria in the Fe-S cluster repair of NO-modified
aconitases. We found that recovery of initial IRP1 activities was
markedly delayed in cells whose mitochondria were unable to produce
ATP. These data provide the first evidence that mitochondrial ATP production is crucial for Fe-S cluster repair of an
extra-mitochondrial protein in mammalian cells. Resumption of
mitochondrial aconitase activity was also affected upon uncoupling, albeit to a lesser extent than that of IRP-1, suggesting that it also
relies on an ATP-dependent mechanism. We therefore
hypothesize that mitochondrial ABC7 is involved in IRP1 Fe-S cluster
repair, but alternative mechanisms cannot be ruled out. In bacteria and yeast, hsp70 chaperones such as Jac1p and Ssq1p, whose activity depends
on ATP, are involved in the formation and repair of Fe-S clusters (33).
It is therefore possible that their putative mammalian homologs are
required for Fe-S cluster repair of both mitochondrial aconitase and
cytosolic IRP-1. Moreover, we also noticed that IRP-1 cannot dissociate
from IRE if mitochondria are unable to produce ATP. This result
supports the idea that IRP-1-IRE complex dissociation, an obligate step
upstream of Fe-S cluster repair, requires an ATP-dependent
mechanism not involving the ISC machinery. This proposal is reminiscent
of the ATP-dependent protein-DNA dissociating activity of
the yeast protein Mot1 (34).
To understand better the role of NO in iron and energy metabolisms, we
then analyzed whether the expression of ferritin and mitochondrial
aconitase, whose mRNAs contain an IRE motif, matched the IRP-1
activation/deactivation process induced by the on/off NO flux signal.
Interestingly, we noticed that DETA/NO mimicked the effect of
stimulation by IFN- In contrast to ferritin and despite a functional IRE in its mRNA
(24, 39), the level of mitochondrial aconitase was not modulated in
response to overnight exposure to DETA/NO. This could be explained by
the fact that mitochondrial aconitase is a very stable protein with a
half-life >16 h in RAW 264.7 cells (data not shown). Therefore,
regulation of mitochondrial aconitase via the IRP/IRE system, if any,
could be visible only after several days, in line with what has been
described in mice maintained for several weeks on a low iron diet
(39).
Lastly, to investigate whether IRP-1 activation/deactivation is
correlated with regulation of Tf-R expression level, we analyzed changes in IRP activities in macrophages exposed to our experimental on/off NO flux signal. As expected, IRP-1-IRE binding greatly increased
in response to NO, but surprisingly, binding of IRP-2 to Tf-R-specific
IREs was unchanged. This exclusive IRP-1 activation was accompanied by
a noticeable increase in Tf-R mRNA levels. Strikingly, the level of
this mRNA continued to increase even after 10 h of cell
culture in the absence of NO and despite the fact that IRP-1 had long
been dissociated from IREs and had recovered an aconitase activity.
This unexpected high expression of Tf-R mRNA indicates that it is
not solely controlled post-transcriptionally by IRPs. This
NO-dependent steady up-regulation requires additional mechanisms that deserve further investigation, but some clues are
already appealing. Recently, it has been shown that NO induces accumulation of the transcription factor hypoxia-inducible factor 1 (40). Assuming that a hypoxia response element, the binding site for
hypoxia-inducible factor 1, has been identified in the Tf-R promoter
region (41), the continuous increase in Tf-R mRNA could be
explained by a long-lasting activation of hypoxia-inducible factor 1 by
NO. However, preliminary studies using transcription inhibitors suggest
that Tf-R mRNA remains stable after DETA/NO removal.2 It is, thus,
tempting to speculate that NO may interfere with the machinery involved
in the degradation of Tf-R mRNA. Unfortunately, this process is
still largely unknown, and to date only polymerase III transcripts have
been suspected to be involved (42).
In conclusion, our results demonstrate that fluctuation of NO levels
regulates IRP-1 by inducing reversible post-translational modifications
that allow the same molecule of IRP-1 to commute quickly between two
activities. One function, aconitase, is lost, but another, IRE binding
capacity, is gained and lasts as long as NO flux is sustained. Upon
removal of the latter, the process is reversible, and initial
activities are recovered. By leaving the protein undamaged, ready to be
reactivated as aconitase after [4Fe-4S] cluster re-insertion by a
machinery left intact, NO in this context proves an authentic regulator
rather than a somewhat toxic effector molecule. Like a hormone, NO has
a short half-life. In addition, NOS dimerization, which is necessary to
synthesize NO, can be interrupted under various pathophysiological
conditions affecting availability of heme, tetrahydrobiopterin, or
L-arginine (43). It is thus well established that in
vivo, L-arginine is depleted in inflammatory settings
or microbial infection as a consequence of arginase up-regulation
(44-46). Cells must adjust to NO rise and fall, and some flexible
transducer molecules have to cope with this obligate metabolic
challenge. Our data support such a special role for IRP-1.
*
This work was supported in part by Association pour la
Recherche contre le Cancer Grant 5856.The costs of publication of this article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
Published, JBC Papers in Press, May 30, 2002, DOI 10.1074/jbc.M203276200
2
C. Bouton and J.-C. Drapier,
unpublished data.
The abbreviations used are:
IRP-1, iron
regulatory protein, IRE;
iron-responsive element, UTR, untranslated
region;
Tf-R, transferrin receptor;
ISC, iron-sulfur cluster;
NONOate, diazeniumdiolate;
SPER/NO, spermine NONOate;
DPTA/NO, dipropylenetriamine NONOate;
DETA/NO, diethylenetetraamine NONOate;
CHX, cycloheximide;
CCCP, carbonyl cyanide m-chlorophenyl
hydrazone;
2-ME, 2-mercaptoethanol;
ABC, ATP binding cassette;
DTT, dithiothreitol;
IFN, interferon;
LPS, lipopolysaccharide.
Recycling of RNA Binding Iron Regulatory Protein 1 into an
Aconitase after Nitric Oxide Removal Depends on Mitochondrial
ATP*
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ABSTRACT
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
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INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
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EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
80 °C for Western blot
analysis. Cytosolic contamination of mitochondria-enriched fractions
was determined by measuring the amount of lactate dehydrogenase activity associated with the mitochondria-enriched fraction (kit LD-L
10, Sigma Diagnostics). This amount value did not exceed 5%. In
control experiments, we also checked by Western blot that IRP-1 protein
was not detectable in mitochondria-enriched fractions.
80 °C for further measurements.
/LPS-treated
cell cytosols was carried out by the addition of 10 mM DTT,
125 µM ferrous ammonium sulfate, and 125 µM
sodium sulfide to 100 µg of protein extracts in 20 mM
HEPES, pH 7.5, 20 mM KCl, and 5% glycerol. All reactions
were performed under an anaerobic atmosphere for 20 min.
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RESULTS
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
/LPS
to produce NO. Nitrite production was verified by nitrite
accumulation in the culture medium (data not shown). Cytosols from
control or NO-producing cells were extracted and incubated with a
source of ferrous iron and sulfide in the presence of DTT. After 20 min
under an anaerobic atmosphere, cytosols were tested for their IRP-1-IRE
binding and aconitase activities. In the IRP-1-IRE binding assay,
samples were routinely treated with 2% 2-ME in a parallel experiment
to express full IRE binding activity (Fig.
1A, lower panel).
Untreated cytosols from control cells presented low IRP-1-IRE binding
activity and significant aconitase activity (27.9 units/mg) (Fig.
1A, lane 1, and B). The addition of
iron, sulfide, and DTT further attenuated IRP-1-IRE binding activity
and increased aconitase activity to 41.1 units/mg (Fig. 1A,
lane 2, and B). In contrast, cytosols from
NO-producing cells showed full IRP-1-IRE binding activity and no
aconitase activity (Fig. 1A, lane 3, and
B). Interestingly, we observed that treatment of these
cytosols with iron, sulfide, and DTT almost completely abolished IRP-1
affinity toward IRE (Fig. 1A, compare lane 4 to
lane 3). This drastic decrease in IRE binding was not observed if one of the components used for the Fe-S cluster
reconstitution was missing (data not shown). In parallel to the loss of
IRE binding by IRP-1, cytosolic aconitase activity resumed and reached
up to 50% that of control cytosols (Fig. 1B, black
bars). Based on recent data showing down-regulation of IRP-1 gene
expression by NO (19), we measured the IRP-1 expression level under our
experimental conditions. In fact, the IRP-1 protein level was decreased
by 57% in NO-producing cells (Fig. 1C), explaining why only
half of aconitase activity was recovered. These data show that
virtually every IRP-1 from NO-producing cells had their Fe-S cluster
repaired. We also showed that in vitro repaired
Fe-S clusters were stable for at least 2 h in air, as indicated by
the constant level of aconitase activity (data not shown).

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Fig. 1.
In vitro reconstitution of the
[4Fe-4S] cluster in IRP-1 from
IFN-
/LPS-treated RAW 264.7 macrophages.
Cells were exposed to 20 units/ml IFN-
and 50 ng/ml LPS for 16 h. Cytosols from control or IFN-
/LPS-treated cells were then
extracted. A and B, reconstitution of the
[4Fe-4S] cluster in IRP-1 was carried out by the addition of 125 µM ferrous ammonium sulfate (Fe2+), 125 µM sodium sulfide (S2
), and 10 mM DTT to 100 µg of control or IFN-
/LPS-treated cell
cytosol in 300 µl of 20 mM HEPES, pH 7.5, 5% glycerol,
and 20 mM KCl. All reactions were performed at room
temperature under anaerobic atmosphere for 20 min. Two µg of protein
of each reaction were then analyzed for IRP-1-IRE binding activity
(panel A) as described under "Experimental Procedures."
In panel B, IRP-1-IRE binding activity was quantified by
phosphorimaging and expressed as percent of the value obtained with 2%
2-ME (open bars). In parallel, 50 µg of protein were
transferred to an open-top cuvette for UV spectroscopy to measure
aconitase activity (filled bars). C, IRP-1 levels
were analyzed by Western blotting as described under "Experimental
Procedures" and quantified by densitometry. Purified recombinant
IRP-1 (rIRP-1) was used as the positive control. The
experiments were performed four times, and a representative result is
shown.

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Fig. 2.
Simultaneous decrease in IRP-1 IRE binding
activity and rise in cytosolic aconitase activity after NO donor
removal. RAW 264.7 cells were incubated with 0.2 mM
SPER/NO for 2 h (A), 0.4 mM DPTA/NO for
4 h (B), and 0.5 mM DETA/NO for 16 h
(C). Cells were then washed to remove the NO donor and
further incubated with fresh medium. At the indicated times, cytosols
were extracted and analyzed for IRP-1-IRE binding activity (left
panels) and aconitase activity (right panels) as
described in Fig. 1. Aconitase activity was expressed as a percent of
the appropriate control value (%/control). The experiments
were performed at least three times, and a representative result is
shown. Ft, ferritin.

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Fig. 3.
Effect of cycloheximide on change in IRP-1
and mitochondrial aconitase activities after DETA/NO removal.
A, cells were exposed to 0.5 mM DETA/NO for
16 h. After extensive washing, cells were further incubated with
fresh medium or medium containing 1 µg/ml CHX. After 6 h,
cytosols and mitochondria-enriched fractions were extracted as
described under "Experimental Procedures" and tested for their
respective aconitase activity. Aconitase activity was expressed as a
percent of the appropriate control value (%/control)
(panel A). In a parallel experiment, cytosols were also
analyzed for IRP-1-IRE binding activity by electromobility shift assay
(upper panel of B). IRP-1-IRE binding activity
was quantified by phosphorimaging and expressed as a percent of the
value obtained with 2% 2-ME (lower panel of B).
The experiments were performed three times, and a representative result
is shown.

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Fig. 4.
Effect of the uncoupler of oxidative
phosphorylation CCCP on the restitution of cytosolic and mitochondrial
aconitase activities after DETA/NO removal. A, RAW
264.7 macrophages were pretreated with DETA/NO for 16 h. Cells
were then washed to remove the NO donor and incubated with fresh medium
or medium containing 10 µM CCCP for additional indicated
times. A, cytosols and mitochondria-enriched fractions were
then extracted and tested for their respective aconitase activity.
Aconitase activity was expressed as a percent of control value
(%/control). B, cells (10 × 106/ml) were treated with 10 µM CCCP for
6 h, and then oxygen consumption was tested as described under
"Experimental Procedures." As indicated by an arrow, the
mitochondrial ATPase inhibitor oligomycin (10 µM) was
added to the chamber. The experiments were performed three times, and a
representative result is shown.

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Fig. 5.
Effect of IRP-1 deactivation on ferritin and
mitochondrial aconitase levels. Cells were pretreated with 0.5 mM DETA/NO for 16 h. Cytosols from control (lane
1) or DETA/NO-treated cells (lane 2) were then
extracted. In a parallel experiment, the medium of control (lane
3) or DETA/NO-pretreated cells (lane 4) was replaced
with fresh medium for an additional 6 h before extracting
cytosols. A, analysis of IRP-1 and IRP-2-IRE binding
activity using the ferritin IRE probe (IRE-Ft).
B, measurement of cytosolic aconitase activity. The
enzymatic activity is expressed as a percent of the appropriate control
value (%/control). C, expression of cytosolic
ferritin and mitochondrial aconitase (mt-aco) levels. Equal
amounts of protein (10 µg) were subjected to Western blot analysis
using an anti-ferritin and anti-mitochondrial aconitase antisera.
Purified mouse liver ferritin and mitochondrial aconitase (Sigma) were
used as positive control (lanes 5). The experiments were
performed four times, and a representative result is shown.

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Fig. 6.
Effect of IRP-1 deactivation on Tf-R mRNA
expression. Cells were pretreated with 0.5 mM DETA/NO
for 16 h. Control (lane 1) and DETA/NO-pretreated cell
cytosols (lane 2) were then extracted. In a parallel
experiment, the medium of control cells (lane 3) and
DETA/NO-pretreated cells (lane 4) was replaced with fresh
medium for an additional 6 h before extracting cytosols.
A, analysis of IRP-1 and IRP-2-IRE binding activity using
the entire 3'-UTR of Tf-R mRNA as probe (TfR 5-IREs). B,
cytosolic aconitase activity was measured spectrophotometrically at 240 nm as described under "Experimental Procedures." C, in a
parallel experiment, cells were treated as in panel A, and
total mRNA was extracted. Twenty µg of total mRNA extracts
were probed with the 2.3-kilobase fragment of the Tf-R cDNA
(upper panel of C). The membranes were
rehybridized with glyceraldehyde-3-phosphate dehydrogenase
(GAPDH) probe (lower panel of C). The
experiments were performed four times, and a representative result is
shown.
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DISCUSSION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

View larger version (23K):
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Fig. 7.
Schematic representation of the
NO/IRP-1/ferritin connection. In the cytosol of resting cells, a
fully assembled [4Fe-4S] cluster allows IRP-1 to function as an
aconitase. 1, upon NO exposure, the Fe-S cluster is
disassembled, and a relaxed form of the protein binds ferritin IRE,
most likely with the participation of a labile accessory protein(s). As
a consequence, ferritin translation is repressed. Upon NO removal, IRP1
dissociates from IRE (2) and, via a mitochondrial
ATP-dependent process (3), recovers cytosolic
aconitase activity, which implies [4Fe-4S] cluster reconstitution
(4). As a result, a high level of ferritin is rapidly
restored (5).
/LPS on macrophage IRP-1 and IRP-2 activities (6,
35, 36). Therefore, use of DETA/NO by avoiding interference due to the
immunological stimuli proved a relevant approach to examining the real
impact of both IRPs on the control of iron metabolism in response to
NO. We showed that IRP-1 activation combined with concomitant IRP-2
inactivation was accompanied by a complete inhibition of ferritin
expression. This points to a determinant role of IRP-1 in this
regulation versus IRP-2. Moreover, in macrophages
re-incubated in fresh culture medium after 16 h of exposure to
DETA/NO, the inability of IRP-1 to bind the ferritin IRE motif
perfectly correlated with reappearance of ferritin expression as
illustrated in Fig. 7. Because inhibition of ferritin translation
increases sensitivity to oxidative stress (37-38), it is conceivable
that the NO-dependent modulation of IRPs strengthens the
macrophage array of weapons against intracellular pathogens.
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FOOTNOTES
To whom correspondence should be addressed. Tel.:
33-1-69-82-45-62; Fax: 33-1-69-07-72-47; E-mail:
Jean-Claude.Drapier@icsn.cnrs-gif.fr.
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ABBREVIATIONS
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DISCUSSION
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