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J. Biol. Chem., Vol. 277, Issue 46, 44244-44251, November 15, 2002
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From the
Received for publication, June 22, 2002, and in revised form, August 20, 2002
In mammals, peripheral circadian clocks are
present in most tissues, but little is known about how these clocks are
synchronized with the ambient 24-h cycles. By using rat-1 fibroblasts,
a model cell system of the peripheral clock, we found that an exchange of the culture medium triggered circadian gene expression that was
preceded by slow down-regulation of Per1 and
Per2 mRNA levels. This profile contrasts to the
immediate up-regulation of these genes often observed for clock
resetting. The screening of factor(s) responsible for the
down-regulation revealed glucose as a key component triggering the
circadian rhythm. The requirement of both glucose metabolism and
RNA/protein synthesis for the down-regulation suggests the involvement
of gene(s) immediately up-regulated by glucose metabolism. An analysis
with high density oligonucleotide microarrays identified >100
glucose-regulated genes. We found among others immediately up-regulated
genes encoding transcriptional regulators TIEG1, VDUP1, and
HES1, in addition to cooperatively regulated genes that are
associated with cholesterol biosynthesis and cell cycle. The immediate
up-regulation of Tieg1 and Vdup1 expression was
dependent on glucose metabolism but not on protein synthesis,
suggesting that the transcriptional regulators mediate the
glucose-induced down-regulation of Per1 and
Per2 expression. These results illustrate a novel mode of
peripheral clock resetting by external glucose, a major food metabolite.
Almost all organisms on earth exhibit daily changes in a variety
of physiological processes, such as gene expression,
metabolism, and behavior (1-3). Many of the daily changes
persist under constant conditions with intrinsic period lengths (~24
h) under the control of autonomous biological pacemakers called
circadian clocks. The circadian clock can be reset by environmental
time cues (such as light) to synchronize with the ambient 24-h cycles.
In mammals, genetic and molecular analyses revealed
transcription/translation-based negative feedback loop(s) that
constitutes the core oscillator of the circadian clock. This loop
involves a well concerted regulation of Per, Cry,
Clock, Bmal genes and their products, resulting
in robust oscillations of Per and Bmal mRNA
levels in antiphase and of several output genes such as Dbp (4, 5). The core oscillatory mechanism seems to be common to both the
central clock localized in the hypothalamic suprachiasmatic nucleus
(SCN)1 and peripheral clocks
distributed in most tissues and cells (6-8). However, peripheral
clocks are distinct from the central clock in that the circadian
expression of the clock genes persists only for several days in culture
(9). The cyclic gene expression in peripheral clocks is probably
sustained by synchronization with some neural and/or humoral signals
generated by the SCN in a circadian manner (9-11).
Recent studies showed that restricted feeding cycle synchronizes
peripheral clocks independently of the central clock (12-14), suggesting that feeding may be a dominant time cue for peripheral clocks. These observations led to an interesting idea that the central
clock indirectly synchronizes peripheral clocks by regulating feeding
behaviors (12-14). This model predicts peripheral clocks to be reset
by feeding-associated events such as food processing, metabolite
absorption, and/or change in hormone levels, but little is known
regarding the molecular identity of the feeding signal to be sent to
peripheral clocks. Cultured cells such as rat-1 fibroblasts have been
used as a model for the study on the peripheral clock system,
especially on the resetting mechanism (7, 8, 15-19). This is because
circadian gene expression in these cells is induced not only by serum
shock that was originally found to be effective (7) but also by
treatment with many chemicals that activate a variety of signal
transduction pathways (8, 15-19). Such induction of circadian rhythm
is always preceded by a stimulus-induced immediate up-regulation of
Per1 and/or Per2 mRNA levels (7, 8, 15-19),
an event that plays an important role in the photic-resetting of the
central clock (20-22). Here we demonstrate that in rat-1 fibroblasts,
an exchange of the culture medium induced circadian expression of the
clock genes, which was preceded by slow down-regulation, not by rapid
up-regulation, of Per1 and Per2 mRNA levels.
An addition of glucose to the culture medium was a key step in this
novel type of rhythm induction, and the down-regulation of
Per1 and Per2 expression required ongoing RNA and
protein synthesis. Microarray analysis revealed glucose-induced up- or
down-regulation of many genes, some of which encode transcriptional regulators and may play an important role in the induction of circadian rhythm.
Materials--
All compounds including each component of DMEM
were dissolved in water before their addition to the culture medium.
Compositions of solutions were as follows (final concentrations in the
culture medium): salts (0.9 mM CaCl2, 0.12 µM Fe(NO3)3·9H2O,
2.7 mM KCl, 0.41 mM MgSO4, 55 mM NaCl, 22 mM NaHCO3, and 0.45 mM NaH2PO4), glucose (2.8 mM), pyruvate (0.5 mM), amino acids (2 mM L-glutamine, 0.2 mM glycine, 0.2 mM L-serine, and 1× minimum essential medium amino acids solution (Invitrogen)), and vitamins (2× minimum essential medium vitamin solution (Invitrogen)).
Cell Culture--
Rat-1 fibroblasts were cultured at 37 °C
under 5% CO2, 95% air in DMEM containing 5.6 mM glucose (Invitrogen) supplemented with 100 units/ml
penicillin, 100 µg/ml streptomycin, and 5% fetal bovine serum
(Invitrogen). Because light/dark cycle did not affect circadian
expression of clock genes in rat-1
fibroblasts,2 the cells were
kept in darkness in the incubator and all of the manipulations were
performed under the light condition. For the experiments, cells were
plated at a density of ~2.5 × 105 cells/35-mm dish
for reverse transcriptase (RT)-PCR analysis or ~1.2 × 106 cells/10-cm dish for microarray analysis. The cells
reached confluence 2 days after the plating, and they were maintained
for another day prior to the start of experiments (at time 0). In the
experiments (Figs. 3-10), 10 × concentrated solution of
compound(s) in one-ninth volume was added to the culture medium.
Preparation of RNA Samples and RT-PCR Analysis--
The cultured
cells were washed with ice-cold phosphate-buffered saline, homogenized
with 1 ml (for 35-mm dish) or 3 ml (for 10-cm dish) of TRIzol reagent
(Invitrogen), and stored at Microarray Analysis--
Poly(A)+ RNA was isolated
from total RNA by Oligotex-dT30 (Roche Molecular Biochemicals) and used
to prepare cRNA sample as described in the GeneChip Expression Analysis
Technical Manual (Affymetrix). Double-stranded cDNA was synthesized
from 1 µg of poly(A)+ RNA by SuperScipt Choice System
(Invitrogen) with T7-(dT)24 primer (Amersham Biosciences).
The product was used as a template to synthesize biotin-labeled cRNA by
in vitro transcription with ENZO BioArray High Yield RNA
Transcript-Labeling Kit (Affymetrix), and cRNA amplified was fragmented
by heat treatment in the presence of KOAc and Mg(OAc)2. 15 µg of cRNA sample then was applied to GeneChip Rat Genome U34A Array
(Affymetrix). Hybridization, washing, staining, and scanning were
performed according to the GeneChip Manual.
The raw data for each probe set were calculated from the
scanned array image by using GeneChip Analysis Suite software
(Affymetrix) and subsequently analyzed by using GeneSpring software
(Silicon Genetics). To compare the data from different arrays, the
signal intensity value for each probe set on each array was normalized as follows: negative control value (median intensity value of negative
control genes included in the array) was subtracted from the raw
values, and the calculated values were divided by their median value.
The values below 0 were set to 0. The normalized values from four
independent arrays were then averaged for each probe set at each time
point, and they were compared between two time points (time 0 with 1 or
4 h) to select probe sets for up- or down-regulated genes with the
following criteria: (i) the intensity exhibits 3-fold or greater
change, (ii) the change is significant (mean ± S.E. at each time
point do not overlap with each other), and (iii) the signal is marked
as "present" by the GeneChip software in at least 2 of 4 arrays at
the time point for the higher average intensity. Expressed sequence
tags in the selected probe sets were characterized by searching
GenBankTM data base using BLAST program. Nomenclature of
the selected genes was updated by using OMIM and GenBankTM
databases. Overlapping probe sets for the same gene were unified by
leaving one that exhibited the strongest signal when their expression
profiles were similar to each other. Hierarchical clustering of the
selected probe sets was then carried out using Cluster program (24) in
uncentered correlation/average linkage clustering mode, and the result
was visualized with the aid of TreeView program (24). Functional
assignment of the selected genes was performed by searching OMIM and
PubMed databases.
Exchange of Culture Medium Down-regulates Per1 and Per2 mRNA
Levels and Induces Circadian Gene Expression in Rat-1
Fibroblasts--
In a search for a stimulus that induces rhythmic
expression of some clock genes in rat-1 fibroblasts, we unexpectedly
found that an exchange of the culture medium to serum-free medium
triggered circadian changes in mRNA levels of Per2,
Dbp, Bmal1, and Cry1 genes (Fig.
1 and Supplemental Fig. 1, medium
change). The phase of the expression rhythm of each gene induced
by the medium exchange was advanced by ~4 h relative to that observed
after a pulse treatment with 50% serum (Fig. 1B and
Supplemental Fig. 1B, compare solid lines with
dashed lines). Notably, no immediate increase was observed in mRNA levels of Per1 and Per2 gene after
the medium exchange, and this contrasted markedly with the rapid
up-regulation of Per1 and Per2 expression after
serum shock (Fig. 1B). We further analyzed immediate changes
of Per1, Per2, and Bmal1 mRNA
levels after the medium exchange and found that these mRNA levels
began to decrease 45-60 min after the treatment (Fig.
2). These results indicate that the
circadian rhythm is induced by the medium exchange in a manner
quite different from that triggered by the serum shock and predict a
novel mechanism of rhythm induction that is preceded by slow
down-regulation of Per1 and Per2 expression.
Glucose Down-regulates Per1 and Per2 mRNA Levels and Induces
Circadian Gene Expression--
The exchange of the culture medium
might have multiple effects on the cultured cells, and hence, we
searched for factor(s) that causes the down-regulation of
Per1 and Per2 mRNA levels (Fig. 3). An exchange of the culture medium
with medium recovered from another culture dish had a minimal effect on
Per1 and Per2 expression (Fig. 3A),
eliminating the possibility that the down-regulation was caused by any
physical stimuli such as a transient change in temperature and/or pH of
the medium or exposure of the cells to the air. We next screened the
components of DMEM (salts, glucose, pyruvate, amino acids, and
vitamins) by adding them separately to the culture medium and found
that glucose remarkably reduced not only Per1 but also
Per2 expression (Fig. 3B) in a manner similar to
that observed after the medium exchange (Fig. 3A).
These observations suggest glucose as a key molecule that
induces the cellular circadian rhythm. We then examined whether the
fresh supply of glucose can trigger the circadian gene expression as
did the medium exchange (Fig. 4). After
the addition of glucose solution (5.6 mM final concentration) to the culture medium, Per2, Dbp,
and Bmal1 genes exhibited robust circadian expression with
profiles nearly identical to those observed after the medium exchange
(Fig. 4B, compare solid lines with dashed
lines), and the profiles were obviously different from those after
the serum shock (Fig. 1B, dashed lines). These
results demonstrate that glucose can trigger circadian rhythm and
suggest that the induction of circadian rhythm by the medium exchange
is mainly attributed to the supply of glucose.
Down-regulation of Per1 and Per2 mRNA Levels Is Dependent on
Glucose Metabolism and RNA/Protein Synthesis--
We were
interested in the molecular mechanism underlying the induction of
circadian rhythm that is preceded by the down-regulation of
Per1 and Per2 expression, and we first
investigated whether glucose itself or its metabolism is important for
the down-regulation (Fig. 5A).
Among several glucose-related compounds examined, metabolizable carbohydrates such as galactose, fructose, and mannose reduced Per1 and Per2 expression to the level that
was achieved by the glucose addition (Fig. 5A). On the other
hand, no significant change of the gene expression was observed with
non-metabolizable mannitol and 3-O-methylglucose (3-OMG)
(Fig. 5A), suggesting that metabolism of glucose is required
for the down-regulation. Because NAD(P)H/NAD(P)+ ratio
seems to determine binding efficiencies of CLOCK-BMAL1 transcriptional activators to E-box sequences (25), glucose may
directly attenuate the transcription of Per1 and
Per2 genes by changing NAD(P)H/NAD(P)+ ratio. We
then examined the effect of pyruvate addition, which would change the
intracellular NADH/NAD+ ratio (Fig. 5B). Even
4-fold molar excess of pyruvate relative to glucose had minimal effect
on Per1 and Per2 mRNA levels (Fig. 5B), suggesting that neither change in NADH/NAD+
ratio nor metabolism of pyruvate causes the down-regulation. These
observations prompted us to explore the dependence of the down-regulation on ongoing protein synthesis (Fig.
6). Although both Per1 and
Per2 mRNA levels gradually increased after the addition of cycloheximide to the culture medium (Fig. 6, blank bars
in middle group), the inhibition of protein synthesis
abrogated the effect of glucose addition (Fig. 6, compare blank
bars with filled bars in middle group).
Similarly, the inhibition of RNA synthesis by actinomycin D blunted the
down-regulating effect of glucose (Fig. 6, compare blank
bars with filled bars in right group), although both Per1 and Per2 mRNA levels
gradually decreased after the addition of the inhibitor (Fig. 6,
blank bars in right group). These results
indicate that the down-regulation of Per1 and
Per2 expression by glucose requires newly synthesized RNA
and protein.
Genes Associated with Transcriptional Regulation, Cholesterol
Biosynthesis, and DNA Replication are Up-regulated by Glucose--
We
searched for genes that responded immediately or slowly to the glucose
addition by using high density oligonucleotide array technology. The
cells were harvested just before, 1 h after, or 4 h after the
glucose addition, and the cRNA sample from each preparation was
hybridized to microarray containing 8,800 probe sets, some of which
recognize same genes. The array contained probe sets for
Per2, Dbp, and Bmal1 genes, and their
signal intensities exhibited temporal profiles similar to those
measured by RT-PCR analysis (Supplemental Fig. 2), ensuring the
reliability of the microarray data. We found 176 probe sets exhibiting
3-fold or greater changes in their signal intensities after the glucose addition (Supplemental Table I, representing 130 known genes with three
overlapping probe sets and 43 expressed sequence tags without sequence
homology to any known gene). Based on the temporal expression pattern,
the 176 probe sets were grouped into eight clusters by hierarchical
clustering method (Fig.
7A, clusters
a-h). Per2 and Dbp genes
belonged to cluster e containing delayed down-regulated genes, and Bmal1 gene belonged to cluster f
containing steadily down-regulated genes (Fig. 7A,
boxed). Among 24 probe sets exhibiting immediate
up-regulation after the glucose addition (Fig. 7A, clusters a, b, and g), we found two genes
encoding transcriptional regulators (Fig.
8A, upper panel); a
transcriptional repressor TIEG1 (26) and a putative transcriptional
regulator VDUP1 (27). In addition, a transcriptional repressor HES1
(28) gene was found to exhibit 2.5-fold up-regulation within 1 h
after the glucose addition (Fig. 8A, middle
panel). On the other hand, the glucose addition had almost no
effect on the expression levels of transcription factors such as
c-fos, jun-B, NGFI-A, NGFI-B, and
egr-3 (Fig. 8A, lower panel),
which in the rodent SCN are immediately up-regulated by light (29).
This result further supports the novelty of the mechanism underlying
the glucose-dependent induction of circadian rhythm in
rat-1 cells. The classification of the 176 probe sets according to the
function of their corresponding gene products (Fig. 7B)
revealed that many genes associated with cholesterol biosynthesis (Fig.
8B) or with the cell cycle and DNA replication (Fig.
8C) exhibit characteristic expression patterns after the glucose addition (see "Discussion").
Tieg1 and Vdup1 Are Glucose-responsive Immediate-early
Genes--
To characterize properties of the glucose-induced
up-regulation of Tieg1, Vdup1, and
Hes1 expression, we investigated detailed temporal changes
of their mRNA levels (Fig. 9). The
addition of glucose transiently up-regulated Tieg1 and
Hes1 expression with a peak at ~1 h after the treatment,
whereas it persistently up-regulated Vdup1 expression (Fig.
9, solid lines). On the other hand, the addition of
non-metabolizable 3-OMG had little or no effect on Tieg1 and
Vdup1 mRNA levels but increased Hes1 mRNA
levels in a manner similar to that after the glucose addition (Fig. 9,
compare solid lines with dashed lines). It is
most probable that Tieg1 and Vdup1 mRNA
levels are immediately up-regulated by glucose metabolism, and this
property is similar to that of the down-regulation of Per1
and Per2 expression (Fig. 5A). Thus,
Tieg1 and Vdup1 genes are the candidates
mediating the effect of glucose on Per1 and Per2
expression.
We then tested the effects of protein and RNA synthesis inhibitors on
the up-regulation of Tieg1 and Vdup1 mRNA
levels induced by glucose (Fig. 10).
Even in the presence of cycloheximide, Tieg1 and
Vdup1 mRNA levels were up-regulated by the glucose
addition (Fig. 10, compare blank bars with filled
bars in middle group), indicating that the
up-regulation is independent of new protein synthesis. On the other
hand, the effect of glucose addition was blunted by the actinomycin D
treatment, suggesting that the glucose action centers at the level of
transcription. These results indicate that Tieg1 and
Vdup1 are glucose-responsive immediate-early genes, which
may act as a direct mediator of the glucose effect.
Glucose as a Direct Resetting Signal for Peripheral
Clocks--
This study stemmed from our fortuitous observation that an
exchange of the culture medium induced circadian gene expression in
rat-1 fibroblasts (Fig. 1 and Supplemental Fig. 1). The screening of
factors associated with the medium exchange led to the identification of glucose as the key molecule (Fig. 3), and glucose addition was shown
to induce the circadian rhythm in culture (Fig. 4). Glucose is one of
the major food metabolites, and in rodents, plasma glucose level
exhibits diurnal rhythm (30). In accordance with this rhythm, 3 of the
4 genes known to contain the glucose-response element (31) exhibit
diurnal expression patterns in the liver (32, 33). In addition,
glucose, but not fat or non-nutritive bulk, causes a phase-shift of
food-anticipatory activity rhythm, which occurs after a restriction of
feeding time (34, 35). Thus, our present results predict an important
role of glucose as a direct resetting signal for peripheral clocks
in vivo, and this idea would explain how the peripheral
clock in the liver responds to a change in feeding time faster than the
clocks in other tissues (12, 13).
Besides glucose, the levels of glucose-regulated hormones such as
insulin and glucagon exhibit diurnal rhythms in plasma (30), and
insulin immediately up-regulates Per1 and Per2
expression in rat-1 fibroblasts (18). In addition, recent studies
revealed an important role of glucocorticoid hormones and vitamins in
the resetting of peripheral clocks (17, 36). Taken together, peripheral clocks in various tissues may be coordinately regulated by multiple circulating factors, the levels of which are affected by the food intake. Paradoxically, because of such a network, it is not feasible to
evaluate the effect of glucose as a direct resetting signal in
vivo. It is the model cell system such as rat-1 fibroblasts that
enables this study.
Down-regulation of Per1 and Per2 mRNA Levels by
Glucose--
The induction of circadian rhythm by glucose seems quite
different in mechanism from either the rhythm induction by serum shock
in cultured fibroblasts or photic resetting of the central clock (Figs.
1, 2, 4, 8A, and Supplemental Fig. 1). It should be stressed
that the circadian gene expression induced by glucose did not accompany
an immediate up-regulation of any clock gene (Figs. 1, 2, 4, and
Supplemental Fig. 1). The down-regulation of Per1 and
Per2 mRNA levels by glucose (Figs. 1, 2, and 4) is reminiscent of in vivo down-regulation of these genes
observed in the rodent SCN during non-photic-resetting (37, 38),
suggesting a common mechanism among the SCN and peripheral clocks for
the resetting that is preceded by the down-regulation of
Per1 and Per2 expression.
Characterization of the molecular mechanism by which glucose
down-regulates Per1 and Per2 mRNA levels
would be of great importance. The important role of glucose metabolism
and the minimal effect of pyruvate (Fig. 5) imply that earlier
metabolic process of glucose contributes to the down-regulation of
Per1 and Per2 expression, and it is less likely
that a change in NADH/NAD+ ratio plays an essential role in
it. The glucose metabolism would initiate new RNA and protein synthesis
that is required for the down-regulation (Fig. 6). As the candidates
for such glucose-responsive genes, we found two genes for
transcriptional regulators TIEG1 and VDUP1 (Figs. 7 and 8A)
whose mRNA levels were immediately up-regulated in a glucose
metabolism-dependent manner (Fig. 9). The identification of
Tieg1 and Vdup1 as glucose-responsive
immediate-early genes (Fig. 10) may implicate these gene products in
the glucose effect. TIEG1 was originally identified as a transforming
growth factor Other Cellular Responses to Glucose--
The microarray analysis
revealed glucose-induced up-regulation or down-regulation of genes
associated with a variety of metabolic pathways (Fig. 7). Among them,
13 genes were related to cholesterol biosynthesis (Fig. 8B),
and they were all up-regulated within 4 h after the glucose
addition. Such an up-regulation may lead to an increase of cellular
activity to synthesize cholesterol from glucose newly supplied. Most of
these genes are known to be under the control of common transcription
factor, SREBP (43, 44), implying the activation of SREBP by the
glucose addition.
The glucose addition also up-regulated four genes related to DNA
replication (Fig. 8C, upper panel) and
down-regulated two genes related to the cell cycle (Fig. 8C,
middle panel). The former four genes are known to exhibit
peak mRNA levels at the G1/S boundary of the cell cycle
(45, 46), and the latter two genes exhibit peak mRNA levels at
G2 and M phases (47, 48). Taken together, it appeared as if
the cells started to progress from G0 or G1 phase after the glucose addition. However, the number of the cells in
culture was almost constant from 24 h before to 48 h after the glucose addition (data not shown), indicating that the cells did
not proliferate under the confluent condition. Considering that several
genes related to the cell cycle exhibit circadian expression patterns
in confluent rat 3Y1 fibroblasts (49), we assume that cell
cycle-related genes play some roles other than the progression of the
cell cycle when the cells are confluent. Notably, all of the four
up-regulated genes are targets of a transcription factor E2F (45, 50),
and this predicts glucose-dependent activation of E2F as well.
In conclusion, this study identified glucose as a key molecule that can
directly reset the peripheral clock and illustrated a novel mode of the
clock resetting. The finding of the genes regulated by the glucose
addition suggested the activation of several transcriptional regulators
and cellular pathways that have not been known to respond to glucose.
Further analyses of these glucose-responsive genes including their
regulatory cis-elements and trans-factors would
lead to elucidation of not only a novel intracellular pathway mediating
the glucose response but also an unidentified mechanism by which
peripheral clocks are synchronized with feeding cycle.
We thank Dr. T. Kasahara for technical
assistance and Dr. H. Itoh (Graduate School of Agricultural and Life
Sciences, The University of Tokyo, Tokyo, Japan) for providing rat-1 fibroblasts.
*
This work was supported in part by grants-in-aid from the
Ministry of Education, Culture, Sports, Science and Technology of Japan.The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
Supported by Research Fellowships of the Japan Society for the
Promotion of Science for Young Scientists.
Published, JBC Papers in Press, September 3, 2002, DOI 10.1074/jbc.M206233200
2
T. Hirota, T. Okano, and Y. Fukada, unpublished data.
The abbreviations used are:
SCN, suprachiasmatic nucleus;
DMEM, Dulbecco's modified Eagle's medium;
RT, reverse transcriptase;
3-OMG, 3-O-methylglucose;
TIEG1, transforming growth factor
Glucose Down-regulates Per1 and Per2
mRNA Levels and Induces Circadian Gene Expression in Cultured Rat-1
Fibroblasts*,
§,
,
Department of Biophysics and Biochemistry,
Graduate School of Science, The University of Tokyo, Hongo 7-3-1,
Bunkyo-ku, Tokyo 113-0033 and ¶ National Cardiovascular Center
Research Institute, Fujishirodai 5-7-1, Suita, Osaka 565-8565, Japan
![]()
ABSTRACT
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
![]()
INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
![]()
EXPERIMENTAL PROCEDURES
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
80 °C until use. The extraction of
total RNA and quantitative RT-PCR analysis were performed as described
previously (23) with some modifications (see "Supplemental
Experimental Procedures").
![]()
RESULTS
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES

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Fig. 1.
Temporal expression patterns of clock genes
in rat-1 fibroblasts after medium exchange or serum shock.
A, at time 0, the culture medium was exchanged with
serum-free medium (medium change) or with medium containing
50% horse serum (serum shock). The serum-treated cells were
shifted to serum-free medium at 2 h. The cells were collected at
indicated time points, and the relative mRNA levels of
Per1, Per2, Dbp, Bmal1, and
Gapdh were determined by RT-PCR analysis. B, the
signals obtained in panel A for each mRNA were
quantitated and normalized to those for Gapdh mRNA, the
level of which was nearly constant throughout the experiment. The mean
value at time 0 was set to 1. Data are the mean ± S.D. of two
independent samples. Results for serum-treated cells were similar to
those previously reported for serum- or endothelin-1-treated rat-1
fibroblasts (7, 8).

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Fig. 2.
Immediate changes of Per1,
Per2, and Bmal1 mRNA levels after
medium exchange. At time 0, the culture medium was exchanged with
serum-free medium. The cells were collected at indicated time points,
and the relative mRNA levels of Per1, Per2,
Bmal1, and Gapdh were determined by RT-PCR
analysis. The signals obtained for each mRNA were normalized to
those for Gapdh mRNA and the mean value at time 0 was
set to 1 (solid lines). Data are the mean ± S.D. of
two independent samples. The serum shock experiment data from Fig.
1B are replotted for comparison (dashed
lines).

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Fig. 3.
Screening of factor that down-regulates
Per1 and Per2 expression.
A, effects of physical stimuli. At time 0, the culture
medium was exchanged with fresh serum-free medium (fresh
medium) or with medium recovered from another culture dish
(cultured medium). B, effects of medium
components. At time 0, the solution containing indicated component(s)
of DMEM was added to the culture medium. Increases in the final
concentrations of all of the components attributed to the addition were
half of their concentrations in DMEM. In each experiment (A
and B), the cells were collected at time 0 or after 4-h
treatment, and the relative mRNA levels of Per1,
Per2, and Gapdh were determined by RT-PCR
analysis. The signals obtained for each mRNA were normalized to
those for Gapdh mRNA, and the mean value at time 0 was
set to 1. Data are the mean ± S.D. of two independent
samples.

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Fig. 4.
Temporal expression patterns of clock genes
after addition of glucose to the culture medium. A,
at time 0, glucose solution (5.6 mM final concentration)
was added to the culture medium. The cells were collected at indicated
time points, and the relative mRNA levels of Per1,
Per2, Dbp, Bmal1, and Gapdh
were determined by RT-PCR analysis. B, the signals obtained
in panel A for each mRNA were normalized to those for
Gapdh mRNA and the mean value at time 0 was set to 1 (solid lines). Data are the mean ± S.D. of two
independent samples. The medium exchange experiment data from Fig.
1B are replotted for comparison (dashed
lines).

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Fig. 5.
Effects of glucose-related compounds and
pyruvate on Per1 and Per2 mRNA
levels. A, effects of glucose-related compounds. At
time 0, the solution containing indicated compound (each 2.8 mM final concentration) or water (as a control) was added
to the culture medium. Cells do not metabolize mannitol and 3-OMG.
B, effect of pyruvate. At time 0, glucose solution (final
2.8 mM), pyruvate solution (final 0.5, 5.6, 11.2 mM), or water (as a control) was added to the culture
medium. In each experiment (A and B), the cells
were collected after 4-h treatment, and the relative mRNA levels of
Per1, Per2, and Gapdh were determined
by RT-PCR analysis. The signals obtained for each mRNA were
normalized to those for Gapdh mRNA, and the mean value
of the control was set to 1. Data are the mean ± S.D. of two
independent samples.

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Fig. 6.
Effects of cycloheximide and actinomycin D on
glucose-induced down-regulation of Per1 and
Per2 expression. Cycloheximide solution (36 µM final concentration, middle group),
actinomycin D solution (final 0.8 µM, right
group), or water (as a control, left group) was added
to the culture medium 30 min before the addition of glucose solution
(final 5.6 mM, filled bar) or water (as a
control, blank bar) at time 0. The cells were collected at
indicated time points, and the relative mRNA levels of
Per1, Per2, and Gapdh were determined
by RT-PCR analysis. The signals obtained for each mRNA were
normalized to those for Gapdh mRNA, and the mean value
of the control at time 0 was set to 1. Data are the mean ± S.D.
of two independent samples.

View larger version (54K):
[in a new window]
Fig. 7.
Classification of the genes regulated by
glucose addition. A, at time 0, glucose solution (5.6 mM final concentration) was added to the culture medium.
The cells were collected at time 0 or at 1 or 4 h after the
glucose addition. They were analyzed by microarray technology, and the
relative signal intensity for each probe set was calculated. The 176 probe sets for genes exhibiting 3-fold or greater changes in their
signals after the glucose addition were classified by hierarchical
clustering according to the temporal expression patterns (clusters
a-h). For genes encoding c-myc intron-binding
protein 1, fucosyltransferase 1, and vitamin D3
up-regulated protein 1, data for two independent probe sets for each
gene are shown because they exhibited expression profiles distinct from
each other. Signal intensities obtained from four independent samples
were averaged for each probe set at each time point, and a ratio of the
value at each time point to that at time 0 is indicated by
colored boxes. The color scale ranges from saturated
green (10-fold decrease) to saturated red
(10-fold increase). Columns represent time points, and
rows represent genes (indicated by their names) among which
clock genes are boxed. The dendrogram shows similarities
among the selected probe sets in their temporal expression patterns. An
immediate up-regulation of Max gene was not reproducible in
RT-PCR analysis (data not shown). B, the 176 probe sets were
classified according to the function of their corresponding gene
products. The number of the genes belonging to each class is
indicated.

View larger version (35K):
[in a new window]
Fig. 8.
Gene groups showing characteristic expression
patterns after glucose addition. The microarray analysis was
performed as described in the legend to Fig. 7. Signal intensities
obtained from four independent samples were averaged for each probe set
at each time point, and a ratio of the value at each time point to that
at time 0 is indicated by colored boxes. The color scale
ranges from saturated green (10-fold decrease) to saturated
red (10-fold increase). Columns represent time
points, and rows represent genes as indicated by their
names. The probe sets exhibiting 3-fold or greater changes in their
signals after the glucose addition were classified according to the
function of their corresponding gene products. A, the
immediately up-regulated genes associated with transcriptional
regulation. Upper panel, transcriptional
regulators up-regulated within 1 h after the glucose addition. For
Vdup1 gene, data for two independent probe sets are shown,
because they exhibited expression profiles distinct from one another.
Middle panel, transcriptional regulator HES1 gene exhibiting
2.5-fold up-regulation within 1 h after the glucose addition.
Lower panel, transcription factors known to be immediately
up-regulated in the rodent SCN by light. B, the genes
associated with cholesterol biosynthesis. Upper panel,
boxed genes are targets of SREBP transcription factor, and
underlined genes are known to be up-regulated by SREBP
overexpression. Lower panel, scheme of
cholesterol biosynthetic pathway was constructed with the aid of KEGG
data base (www.kegg.com). Genes for the enzymes shown in red
were up-regulated by the glucose addition. The array contains no probe
set for phosphomevalonate kinase gene. C, the genes
associated with the cell cycle and DNA replication. These genes were
divided into three subclasses according to their known mRNA
expression patterns during the cell cycle (upper to
lower panels).

View larger version (16K):
[in a new window]
Fig. 9.
Immediate changes of Tieg1,
Vdup1, and Hes1 mRNA levels after
glucose or 3-OMG addition. At time 0, glucose (5.6 mM
final concentration, solid lines) or 3-OMG (final 5.6 mM, dashed lines) solution was added to the
culture medium. The cells were collected at indicated time points, and
the relative mRNA levels of Tieg1, Vdup1,
Hes1, and Gapdh were determined by RT-PCR
analysis. The signals obtained for each mRNA were normalized to
those for Gapdh mRNA, and the mean value at time 0 was
set to 1. Data are the mean ± S.D. of two independent
samples.

View larger version (22K):
[in a new window]
Fig. 10.
Effects of cycloheximide and actinomycin D
on glucose-induced up-regulation of Tieg1 and
Vdup1 expression. Cycloheximide solution (36 µM final concentration, middle group),
actinomycin D solution (final 0.8 µM, right
group), or water (as a control, left group) was added
to the culture medium 30 min before the addition of glucose solution
(final 5.6 mM, filled bar) or water (as a
control, blank bar) at time 0. The cells were collected at
indicated time points, and the relative mRNA levels of
Tieg1, Vdup1, and Gapdh were
determined by RT-PCR analysis. The signals obtained for each mRNA
were normalized to those for Gapdh mRNA, and the mean
value of the control at time 0 was set to 1. Data are the mean ± S.D. of two independent samples.
![]()
DISCUSSION
TOP
ABSTRACT
INTRODUCTION
EXPERIMENTAL PROCEDURES
RESULTS
DISCUSSION
REFERENCES
-inducible early gene, and this protein binds to Sp1
sequence to repress the transcription (26). Because several Sp1
sequences are present near transcription initiation sites of
Per1 and Bmal1 genes (39, 40), it is possible
that TIEG1 acts as glucose-dependent negative regulator of
these genes. On the other hand, VDUP1 (identified as vitamin
D3 up-regulated protein) is known to negatively regulate thioredoxin, a multifunctional protein that promotes DNA binding of
various transcription factors such as NF
B, AP-1, and p53 (27). Interestingly, thioredoxin enhances transactivation activities of basic
helix-loop-helix-PAS transcription factors HIF1
and HLF (HIF1
-like factor) by facilitating their interaction
with co-activator CREB-binding protein/p300 (41), which also mediates transactivation by CLOCK-BMAL1 heterodimer (42). Thus, VDUP1 might
inactivate CLOCK-BMAL1 by inhibiting thioredoxin function and hence
reduce the transcription of Per1 and Per2 genes.
Taken together, TIEG1 and VDUP1 are candidates for clock-associated molecule(s) mediating the glucose signal.
![]()
ACKNOWLEDGEMENTS
![]()
FOOTNOTES
The on-line version of this article (available at
http://www.jbc.org) contains supplemental "Experimental
Procedures," Figs. 1 and 2, and Table I.
To whom correspondence should be addressed: Dept. of
Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo 113-0033, Japan. Tel./Fax: 81-3-5802-8871; E-mail: sfukada@mail.ecc.u-tokyo.ac.jp.
![]()
ABBREVIATIONS
-inducible early gene 1;
VDUP1, vitamin
D3 up-regulated protein 1;
HES1, hairy and enhancer of
split 1;
CREB, cAMP-response element-binding protein;
SREBP, sterol
regulatory element-binding protein.
![]()
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