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Originally published In Press as doi:10.1074/jbc.M209210200 on October 15, 2002
J. Biol. Chem., Vol. 277, Issue 51, 50190-50197, December 20, 2002
Leishmania EF-1 Activates the Src Homology 2 Domain Containing
Tyrosine Phosphatase SHP-1 Leading to Macrophage Deactivation*
Devki
Nandan §,
Taolin
Yi¶,
Martin
Lopez ,
Crystal
Lai , and
Neil E.
Reiner **
From the Department of Medicine, Division of
Infectious Diseases, and the Department of Microbiology and
Immunology, The University of British Columbia, Faculties of Medicine
and Science, The Research Institute of the Vancouver Hospital and
Health Sciences Center, Vancouver, British Columbia V5Z 3J5, Canada
and the ¶ Lerner Research Institute NB4-67, Cleveland Clinic
Foundation, Cleveland, Ohio 44195
Received for publication, September 9, 2002
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ABSTRACT |
The human leishmaniasis are persistent infections
of macrophages caused by protozoa of the genus Leishmania.
The chronic nature of these infections is in part related to induction
of macrophage deactivation, linked to activation of the Src homology 2 domain containing tyrosine phosphatase-1 (SHP-1) in infected cells. To investigate the mechanism of SHP-1 activation, lysates of
Leishmania donovani promastigotes were subjected to SHP-1
affinity chromatography and proteins bound to the matrix were sequenced
by mass spectrometry. This resulted in the identification of
Leishmania elongation factor-1 (EF-1 ) as a
SHP-1-binding protein. Purified Leishmania EF-1 , but not
host cell EF-1 , bound directly to SHP-1 in vitro leading to its activation. Three independent lines of evidence indicated that
Leishmania EF-1 may be exported from the phagosome
thereby enabling targeting of host SHP-1. First, cytosolic fractions
prepared from macrophages infected with
[35S]methionine-labeled organisms contained
Leishmania EF-1 . Second, confocal, fluorescence
microscopy using Leishmania-specific antisera detected
Leishmania EF-1 in the cytosol of infected cells. Third, co-immunoprecipitation showed that Leishmania EF-1 was
associated with SHP-1 in vivo in infected cells. Finally,
introduction of purified Leishmania EF-1 , but not the
corresponding host protein into macrophages activated SHP-1 and blocked
the induction of inducible nitric-oxide synthase expression in response
to interferon- . Thus, Leishmania EF-1 is identified
as a novel SHP-1-binding and activating protein that recapitulates the
deactivated phenotype of infected macrophages.
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INTRODUCTION |
According to the latest WHO report, 12 million people are
affected by leishmaniasis worldwide and 2 million new cases occur each
year (Leishmaniases Control,
www.who.int/health-topics/leishmaniasis.htm, updated 2000). Moreover,
the incidence of the leishmaniasis has been on the rise because of
multiple factors including the AIDS epidemic, increased international
travel, lack of effective vaccines, difficulty in controlling vectors,
international conflicts, and the development of resistance to
chemotherapy. Progress in controlling the leishmaniasis will require
improved understanding of pathogenesis to identify novel drug targets
or vaccine candidates.
Leishmania donovani is the major causative agent of human
visceral leishmaniasis. Leishmania live as either
extracellular, flagellated promastigotes in the digestive tracts of
their sand fly vectors or as nonflagellated amastigotes within
macrophages, where they survive and replicate within phagolysosomes.
Macrophages as part of both the innate and acquired immune systems are
programmed to ingest and destroy intracellular pathogens. Hence, the
mechanisms used by Leishmania and other intracellular
pathogens to evade elimination by macrophages are important issues in
cell biology and immunology. Infected macrophages are often refractory
to cell activation (1, 2) and recent evidence suggests that this is
related to impaired cell signaling (1-4) brought about by the action
of protein-tyrosine phosphatase (5). In particular, several lines of
evidence have converged to establish a role for the host macrophage Src
homology 2 domain containing protein tyrosine phosphatase-1
(SHP-1)1 in the pathogenesis
of infection with Leishmania (4, 6-9). Notably, infected
macrophages show increased SHP-1 activity and inhibition of tyrosine
phosphatase activity reverses the abnormal phenotype of infected cells
(4). Moreover, resistance to Leishmania infection is
enhanced in SHP-1-deficient macrophages and mice (8). The argument that
activation of host SHP-1 is involved in the pathogenesis of infection
with Leishmania is also supported by the recent finding that
the first-line anti-leishmanial agent used clinically, sodium
stibogluconate, is an inhibitor of SHP-1 (10).
Although much is known about the mechanisms that regulate SHP-1
activation, few discrete SHP-1 activating ligands have been identified
(11, 12). Here, we show that elongation factor-1 (EF-1 ) of
L. donovani is a novel SHP-1-binding protein and SHP-1 activator, properties not shared by the corresponding host protein. The
results also show that introduction of Leishmania EF-1 ,
but not host EF-1 into cells, recapitulates the deactivated
phenotype of Leishmania-infected macrophages. These findings
identify Leishmania EF-1 as a novel, candidate virulence factor.
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EXPERIMENTAL PROCEDURES |
Reagents and Chemicals--
RPMI 1640, Hanks' balanced salt
solution, and protease inhibitors (phenylmethylsulfonyl fluoride,
aprotinin, pepstatin A, and leupeptin),
1,4-diazabiocyclo[2.2.2]octane, DEAE-Sepharose, CM-Sepharose CL-6B,
cellulose phosphate (fibrous form), anti-mouse IgG-fluorescein, and
calmodulin-agarose were obtained from Sigma. Medium 199 was from
Invitrogen. The RAW 264.7 cell line was from the American Type
Culture Collection (Rockville, MD). Anti-EF-1 was from Upstate
Biotechnology Inc. (Lake Placid, NY). Anti-iNOS and anti-cathepsin D
were from Santa Cruz Biotechnology Inc., Santa Cruz, CA. Horseradish
peroxidase-conjugated goat anti-mouse antibodies, protein G-agarose,
and electrophoresis reagents and supplies were from Bio-Rad. Enhanced
chemiluminescence (ECL) reagents were from Amersham Biosciences.
Preparation of the GST-SHP-1 construct, its expression and purification
has previously been described (13). Protein delivery system Profect 1 was obtained from Targeting System, Santee, CA.
L. donovani--
Amastigotes of the Sudan strain 2S of L. donovani were maintained by serial intracardiac inoculation of
amastigotes into female Syrian hamsters. Amastigotes were isolated from
the spleens of hamsters infected 4 to 6 weeks earlier as described
previously (14). Promastigotes were prepared from freshly isolated
amastigotes from spleens of infected hamsters by culturing in medium
199 supplemented with 10% (v/v) heat-inactivated fetal bovine serum,
penicillin (100 units/ml), streptomycin (100 µg/ml), adenosine (1 mM), folic acid (10 µg/ml), and hemin (6 µg/ml) at room
temperature. Promastigotes were maintained in the laboratory by
transferring every third day in medium 199 supplemented as described
above. For most experiments, parasites in stationary phase (day 5 containing ~50 × 106 per ml) were used.
Cell Culture--
The murine macrophage cell line RAW 264.7 was
cultured in RPMI 1640 medium supplemented with 10% heat-inactivated
fetal bovine serum, penicillin (100 units/ml), and streptomycin (100 µg/ml) at 37 °C in a humidified atmosphere (5%
CO2).
Infection of RAW Cells with L. donovani--
Exponentially
growing RAW cells were infected with either stationary phase
promastigotes or freshly isolated amastigotes at a parasite to cell
ratio of ~10:1. After incubation at 37 °C and 5% CO2,
noninternalized parasites were removed by washing with Hanks' balanced
salt solution. To determine the rate of infection, cytospin
preparations were prepared from dislodged cells, which were stained
with Diff-Quik.
GST-SHP-1 Affinity Chromatography--
Leishmania
promastigotes (2-3 × 109) were lysed in ice-cold
lysis buffer A (50 mM Tris, pH 7.5, 0.5% Triton X-100, and
20 mM NaCl) containing a mixture of protease inhibitors for
20 min on ice. All subsequent steps were performed at 4 °C. Lysates
were centrifuged in a microcentrifuge at maximum speed for 10 min and supernatants were incubated with GST-SHP-1 affinity beads with end-over-end rotation for 2 h. After incubation, affinity beads were transferred to a column and washed extensively. Bound proteins were released with buffer A containing 0.5 M NaCl. An
aliquot of partially purified SHP-1 bound proteins was subjected to
SDS-PAGE (12%) followed by silver staining.
Immunoprecipitation and Immunoblotting--
L.
donovani promastigotes in stationary phase were collected by
centrifugation and washed twice with Tris-buffered saline, pH 7.4, and
immediately processed for immunoprecipitation. For immunoprecipitation
of EF-1 , parasites were lysed on ice in lysis buffer B (50 mM Tris, pH 7.4, 1% Triton X-100, 0.15 M NaCl,
1 mM EGTA, 5 mM NaF, 1 mM sodium
orthovanadate, 1 mM phenylmethylsulfonyl fluoride, 10 µg
of aprotinin/ml, 10 µg of leupeptin/ml, and 2 µg of pepstatin
A/ml). Cell lysates were clarified by centrifugation in a
microcentrifuge at maximum speed for 20 min at 4 °C. The resulting
supernatants were incubated with anti-EF-1 antibodies for 16 to
18 h at 4 °C. After incubation with antibodies, protein G-agarose was added for 2 h at 4 °C for recovery of immune
complexes. After extensive washing, immune complexes were released by
boiling agarose beads in SDS sample buffer without -mercaptoethanol. Samples were analyzed by 7.5% SDS-polyacrylamide gel electrophoresis and electroblotted onto nitrocellulose membranes. The membranes were
blocked with 3% nonfat dry milk in phosphate-buffered saline followed
by incubation with anti-EF-1 antibodies. After washing, the blots
were incubated with anti-mouse horseradish peroxidase-conjugated antibody, and developed using the ECL detection system.
Purification of EF-1 from L. donovani Promastigote and RAW
Cells--
All operations were carried out at 4 °C unless otherwise
indicated. Approximately 1 × 108 exponentially
growing RAW cells and 3 × 109 stationary phase
L. donovani promastigotes were washed extensively with
Hanks' salt solution and suspended separately in 10 ml of ice-cold
buffer C (50 mM Tris, pH 7.5, 1 mM EDTA, 1 mM dithiothreitol, and 20% glycerol) containing a mixture
of protease and phosphatase inhibitors as described above for
immunoprecipitation. Cells were sonicated to prepare a cell lysate and
centrifuged at 100,000 × g for 20 min. The supernatant
was applied to a DEAE-Sepharose column connected to the CM-Sepharose
column previously equilibrated in buffer C containing 50 mM
KCl. The columns were washed with equilibration buffer until all
nonbound proteins had eluted. After disconnection of the CM-Sepharose
column, bound proteins on this column were eluted with increasing KCl
concentration in buffer C. The fractions containing EF-1 as analyzed
on SDS-PAGE followed by immunoblotting using anti-EF-1 , were pooled
and dialyzed overnight against buffer C without KCl. The dialyzed
material was then applied to a phosphocellulose column and bound
proteins were eluted with increasing concentrations of KCl. The
fractions were analyzed for the presence of EF-1 on SDS-PAGE
followed by immunoblotting using anti-EF-1 antibodies. The fractions
containing near homogeneous EF-1 (as judged by silver staining) were
pooled and dialyzed overnight against buffer C and used for further studies.
Binding Assay (EF-1 + SHP-1)--
For binding assays,
purified EF-1 from L. donovani and RAW cells were
incubated with 25 µl (packed volume) of glutathione-agarose beads
containing equal amounts of GST-SHP-1. Binding was accomplished by
mixing in 100 µl of binding buffer (50 mM HEPES, pH 7.5, 0.15 M NaCl, 1 mM EDTA, 1 mM
dithiothreitol, 0.01% Triton X-100, and 1% glycerol) for 2 h at
4 °C. Beads were collected by centrifugation and washed four times
with binding buffer. Bound EF-1 was eluted by boiling beads for 5 min in Laemmli SDS-gel electrophoresis sample buffer and analyzed by
SDS-PAGE followed by immunoblotting using anti-EF-1 .
Binding Assay (EF-1 + Calmodulin)--
For this binding
assay, purified EF-1 from L. donovani and RAW cells was
incubated with 25 µl (packed volume) of calmodulin-agarose beads.
Binding and analysis of bound EF-1 were performed essentially as
described for GST-SHP-1 with minor modifications. Binding buffer contained 2 mM CaCl2 instead of EDTA.
Phosphatase Assay--
Immunoprecipitated SHP-1 on protein
G-Sepharose beads or as GST-SHP-1 on glutathione-Sepharose beads was
washed twice with ice-cold phosphatase assay buffer (62 mM
HEPES, pH 7.5, 6.25 EDTA, 12.5 mM dithiothreitol) and then
incubated at 37 °C for 30 min in 200 µl of phosphatase assay
buffer containing 2 mM p-nitrophenyl phosphate
(pNPP). Reactions were terminated by addition of 1 ml of 0.2 M NaOH and absorbance was measured at 410 nM.
Preparation of Cytosolic Fractions from Control and
Leishmania-infected Macrophages--
Macrophages were either left
untreated or infected with Leishmania promastigotes at an
approximate parasite to cell ratio of 10:1. After overnight (16 h)
incubation, control and infected cells were washed and cytosolic
fractions were prepared. Cells were treated with cold hypotonic buffer
(20 mM Tris, pH 7.5) containing protease and phosphatase
inhibitors and passed through a 22-gauge needle to disrupt cells. Cell
debris was removed by low speed centrifugation and supernatant was
supplemented with NaCl to a final concentration of 0.15 M.
The cytosolic fractions were prepared further by centrifuging
supernatants at 100,000 × g for 20 min at 4 °C.
These clarified, high speed supernatants were used as cytosolic fractions.
Metabolic Labeling of Leishmania and Immunoprecipitation of
Leishmania EF-1 from Infected Macrophages--
L.
donovani promastigotes were metabolically labeled with 5 µCi/ml
[35S]methionine in methionine-free RPMI 1640 containing
1% nondialyzed fetal calf serum at room temperature. After 16 h
of labeling, parasites were washed twice with RPMI to remove
unincorporated [35S]methionine and immediately used for
infection of macrophages at an approximate parasite to cell ratio of
10:1. After a 16-h incubation, cells were washed extensively with
Hanks' balanced salt solution and processed to prepare cytosolic
fractions as described before. The cytosolic fraction from infected
macrophages was used to immunoprecipitate labeled Leishmania
EF-1 essentially as described before.
Production of Leishmania EF-1 -specific
Antisera--
Polyclonal antisera against Leishmania
EF-1 was raised in BALB/c mice. Leishmania
EF-1 -specific peptide (KTVTYAQSRYD) was coupled to KLH to immunize
mice and sera were collected after three booster immunizations.
Immunofluoresence Staining and Confocal
Microscopy--
Macrophages grown on coverslips were incubated with
L. donovani promastigotes at an approximate parasite to cell
ratio of 10:1. After overnight incubation (16 h), control and infected cells were washed with phosphate-buffered saline and fixed at room
temperature for 10 min with 2.5% paraformaldehyde. Following washing
with phosphate-buffered saline, cells were blocked for 30 min with 1%
bovine serum albumin in phosphate-buffered saline containing 0.1%
Triton X-100, and incubated with either commercial anti-EF-1 (1:10)
or with Leishmania-specific anti-EF-1 (1:100) for 1 h, washed extensively, and stained for 45 min with anti-mouse IgG
fluorescein (1:100). After further washing, the coverslips were mounted
on glass slides using mounting media containing antifade (2.5%
1,4-diazabiocyclo[2.2.2]octane, 90% glycerol, phosphate-buffered saline, pH 8.0). For staining of EF-1 promastigotes, organisms were
transferred to glass slides using cytospin and processed essentially
the same way as described above for macrophages. Preparations were
examined using a Bio-Rad Radiance Plus confocal microscope (Bio-Rad)
equipped with Zeiss Axiovert S100VT, using a ×63 oil immersion
objective. Images of 256 × 256 pixels (50 × 50 µm) were acquired using LaserSharp software (Bio-Rad). Sections of 0.2 µm
thickness in the z axis (40-50 slices per image) were
assembled into stacks and projected using the Scion Image 4.0.2 software. Projections were then processed and merged using Adobe
Photoshop 6.0.
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RESULTS |
Identification of Leishmania EF-1 as a SHP-1-binding
Protein--
Initial studies showed that crude lysates from both
Leishmania promastigotes and amastigotes contained a factor
that activated SHP-1 in vitro (data not shown). To
investigate this further, affinity chromatography of
Leishmania lysates was carried out using GST-SHP-1 coupled
to glutathione-Sepharose as matrix. Two prominent proteins with
approximate subunit sizes of 56 and 44 kDa specifically bound to
GST-SHP-1 (Fig. 1A). A
parallel affinity column consisting of GST-glutathione-Sepharose showed
no detectable binding proteins (data not shown). The two bands shown in
Fig. 1A were excised from the gel, and tryptic peptide
digests were analyzed by mass spectrometry. Whereas the identity of the
44-kDa band is as yet undetermined, eight of the peptides (TATGHLIYK, TIEKFEK, YAWVLDKL, VGYNVEK, SENMPWYK, LPLQDVYK, IGGIGTVPVGR, and KFAEIESKI) sequenced from the 56-kDa silver-stained band were found to
match EF-1 from Leishmania braziliensis (NCBInr accession number 5834626) and covered 16.2% of the sequence.

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Fig. 1.
Identification of a
Leishmania, 56-kDa SHP-1-binding protein as
EF-1 . A, GST-SHP-1 affinity chromatography.
Leishmania promastigotes were lysed in ice-cold lysis buffer
A containing a mixture of protease inhibitors for 20 min on ice. All
subsequent steps were performed at 4 °C. Lysates were clarified by
centrifugation, and supernatants were incubated with GST-SHP-1 affinity
beads with end-over-end rotation for 2 h. After incubation,
affinity beads were transferred to a column and washed extensively.
Bound proteins were released with buffer A containing 0.5 M
NaCl. An aliquot of partially purified SHP-1-bound proteins was
subjected to SDS-PAGE (12%) followed by silver staining. Positions of
SHP-1-binding proteins are shown by arrows (upper
arrow, 56 kDa and lower arrow, 44 kDa). B,
immunoblotting with anti-EF-1 . An aliquot of GST-SHP-1-binding
proteins (lane 1), 50 µg of total detergent promastigote
lysate (lane 2), and 50 µg of total lysate from the human
carcinoma line A431 (lane 3) were separated on SDS-PAGE,
transferred to nitrocellulose, and probed with anti-EF-1 .
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To confirm the identify of the 56-kDa protein, GST-SHP-1-binding
proteins were prepared from a Triton X-100 lysate of stationary phase
L. donovoni promastigotes. The original
Leishmania lysate and the proteins eluted from the column
were separated by SDS-PAGE, transferred to nitrocellulose, and probed
with anti-EF-1 antibody. Single bands of identical size in both the
Leishmania lysate and in the GST-SHP-1 affinity column
eluate (lane 1 and 2 in Fig. 1B) were
detected, thus confirming the internal protein sequence data indicating
that the 56-kDa SHP-1-binding protein band contained EF-1 . Notably,
Leishmania EF-1 was observed to be larger than its human
homologue (compare lanes 1 and 2 with lane
3 in Fig. 1B). These results identified
Leishmania EF-1 as a SHP-1-binding protein.
Leishmania EF-1 and Host EF-1 Show Differential Binding to
SHP-1 in Vitro--
To investigate further the interaction of
Leishmania EF-1 with SHP-1, EF-1 was purified to near
homogeneity from murine macrophages and from Leishmania
promastigotes as described under "Experimental Procedures." The
fractions containing homogeneous EF-1 as judged by immunoblotting
(data not shown) and silver staining (Fig.
2, A and B) were
pooled and dialyzed. The purity of these preparations was examined
further by tryptic digestion and analysis by mass spectrometry and
showed no detectable contamination by other proteins (data not shown).
Purified EF-1 from both sources was incubated with GST-SHP-1 and
binding assays were performed as described under "Experimental
Procedures." The results in Fig. 3A show that EF-1 from
Leishmania bound directly and selectively to SHP-1 as
comparatively little binding of host EF-1 was detected. To determine
that the relatively poor binding of host EF-1 to SHP-1 was not
related to loss of functional integrity, both preparations of purified
EF-1 were used in binding assays with calmodulin-agarose beads in
the presence of Ca2+. It has previously been shown that
EF-1 from both T. brucei and mammalian origin directly
interacts with calmodulin and this interaction seems to require EF-1
in its native conformation (15). As expected, the results in Fig.
3B show that EF-1 from Leishmania and
macrophages bound to calmodulin. These findings indicated that purified
host EF-1 was conformationally intact and confirmed that the
interaction of Leishmania EF-1 and SHP-1 was
specific.

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Fig. 2.
Purification of
EF-1 s. EF-1 was purified from L. donovani (Ld) (A) and macrophages
(B) (RAW264.7 cells) as described under "Experimental
Procedures." Shown are silver-stained gels of individual purification
steps. Lane 1, cell extract in buffer A before DEAE + CM-Sepharose; lane 2, buffer A insoluble proteins;
lane 3, flow through from DEAE + CM-Sepharose; lane
4, pooled fractions eluted from DEAE + CM-Sepharose containing
EF-1 ; lane 5, pooled fractions eluted from
phosphocellulose containing EF-1 .
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Fig. 3.
GST-SHP-1 binds selectively to
Leishmania EF-1 . EF-1 was
purified to homogeneity from Leishmania promastigotes
(Ld) and from macrophages as described in the legend to Fig.
2 and "Experimental Procedures." For binding to SHP-1
(A), purified EF-1 from either Leishmania or
macrophages was incubated with 25 µl (packed volume) of
glutathione-agarose beads containing equal amounts of GST-SHP-1.
Binding was accomplished by mixing in 100 µl of binding buffer for
2 h at 4 °C. The beads were collected by centrifugation and
washed four times with binding buffer. Bound EF-1 was eluted by
boiling beads in Laemmli sample buffer, and separated on SDS-PAGE
followed by immunoblotting using anti-EF-1 . Lanes 1 and
5 represent input amounts of purified EF-1 , lanes
2, 3, 6, and 7 are binding assays
performed in duplicate. B, binding of EF-1 to
calmodulin-agarose was performed essentially as described above for
GST-SHP-1 except that binding buffer contained 0.2 mM
CaCl2 instead of EDTA. Lanes 1 and 4 represent input amounts of purified EF-1 , lanes 2,
3, 5, and 6 are duplicate binding
assays. The results shown are from one of two independent experiments
that yielded similar results.
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Leishmania, but Not Host EF-1 Is a SHP-1
Activator--
Specific binding of Leishmania EF-1 to
SHP-1 in vitro suggested that it may be a regulator of
SHP-1. To examine this possibility, purified Leishmania or
macrophage EF-1 were incubated with freshly prepared GST-SHP-1 to
measure in vitro activation. After incubation, unbound
proteins were removed and affinity beads were assayed for SHP-1
phosphatase activity using pNPP as a substrate as described under
"Experimental Procedures." The results shown in Fig.
4A indicated that
Leishmania EF-1 , but not its mammalian homologue, was
capable of activating SHP-1. Quantitatively, the results observed were
comparable with those obtained by other investigators using model
phosphotyrosyl containing peptides (16) to activate SHP-1 in
vitro.

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Fig. 4.
SHP-1 is specifically activated by
Leishmania EF-1 . A, in
vitro activation of SHP-1. Purified Leishmania or
macrophage EF-1 was incubated with freshly prepared GST-SHP-1 as
described under "Experimental Procedures." After incubation,
nonbound proteins were removed and affinity beads were assayed for
SHP-1 phosphatase activity using pNPP as a substrate. Relative
phosphatase activity was assessed by measuring changes in absorbance at
410 nm. B, in vivo activation of macrophage
SHP-1. Approximately 1 µg of purified EF-1 prepared from either
Leishmania or macrophages or an equivalent amount of bovine
serum albumin was incubated separately with Profect 1 reagent in
serum-free media to prepare protein-Profect 1 complexes for delivery to
RAW264.7 cells (~2 × 106) according to the
manufacturer's instructions. After 2-3 h of incubation, cells were
lysed in buffer C containing a mixture of protease inhibitors for 20 min on ice and incubated with anti-SHP-1 for 2 h at 4 °C.
Immune complexes were recovered using protein A-Sepharose and after
extensive washing with buffer C, immune complexes were assayed for
phosphatase activity using pNPP as a substrate. The results shown are
from one of three independent experiments that yielded similar
results.
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We also examined whether Leishmania EF-1 was able to
activate SHP-1 in vivo. Purified EF-1 from
Leishmania, macrophages, or an equivalent amount of bovine
serum albumin were mixed separately with Profect 1 reagent in
serum-free medium for delivery to macrophages. After 2-3 h of
incubation, cells were lysed and immunoprecipitated for SHP-1. Immune
complexes were recovered using protein A-Sepharose and after extensive
washing, immune complexes were assayed for phosphatase activity using
pNPP as a substrate. (Control rabbit serum brought down no SHP-1
activity, data not shown.) As shown in Fig. 4B, delivery of
Leishmania EF-1 to macrophages resulted in SHP-1
activation in vivo. In contrast, activation of SHP-1 was not
observed when purified macrophage EF-1 or bovine serum albumin were
used as control proteins (Fig. 4B).
Leishmania EF-1 Accesses the Cytosol of Infected
Macrophages--
SHP-1 is predominantly a cytosolic protein, whereas
Leishmania reside within a membrane-bound vacuole. This
raises an important question of whether a factor from vacuole-bound
Leishmania could access cytosolic SHP-1. To examine the
subcellular distribution of Leishmania EF-1 in infected
macrophages, Leishmania promastigotes were biosynthetically
labeled with [35S]methionine, washed to remove
unincorporated isotope, and immediately used to infect macrophages.
After overnight infection, cells were disrupted and cytosolic fractions
were isolated as described under "Experimental Procedures." EF-1
was immunoprecipitated from the cytosolic, infected cells under native
conditions. Immunoprecipitated proteins were separated by SDS-PAGE and
detected by autoradiography. Anti-EF-1 precipitated a protein of the
correct size for Leishmania EF-1 (Fig.
5A, lane 2)
suggesting the presence of Leishmania EF-1 in cytosol of
infected macrophages. No [35S]methionine-labeled proteins
were precipitated using irrelevant antibody (Fig. 5A,
lane 1). To control for the possibility that disruption of
phagolysosomes during cell fractionation resulted in the release of
EF-1 , cytosolic fractions were examined for the presence of mature
cathepsin D, a marker of phagolysosomes. The absence of detectable
cathepsin D in the cytosol of infected cells (Fig. 5B,
lane 1) suggests that any disruption of phagolysosomes was
negligible and thus did not account for the presence of
Leishmania EF-1 this fraction.

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Fig. 5.
Detection of Leishmania
EF-1 in the cytosol of infected
macrophages. A, autoradiograph of immunoprecipitated
EF-1 . [35S]Methionine-labeled promastigotes were used
to infect ~4 × 106 macrophages at a parasite to
cell ratio of 10:1. After incubation for 16 h, cells were
processed to isolate a cytosolic fraction for immunoprecipitation using
anti-EF-1 or isotype-matched irrelevant antibody. Immunoprecipitated
proteins were separated by SDS-PAGE and detected by autoradiography.
Lane 1, irrelevant antibody; lane 2,
anti-EF-1 . B, immunoblotting to detect cathepsin D in the
cytosolic fraction of infected macrophages. Approximately 100 µg of
proteins from the cytosolic or pellet (containing phagosomes) fractions
from infected macrophages were precipitated using ice-cold
trichloroacetic acid (10% final). Trichloroacetic acid precipitates
were washed with cold acetone, air dried, solublized in sample buffer,
and separated by SDS-PAGE followed by transfer to nitrocellulose. The
membranes were probed with anti-cathepsin D antibodies. Lane
1, cytosolic proteins; lane 2, proteins from the pellet
fraction. C, specificity of Leishmania EF-1
anti-peptide antibody. Approximately 50 µg of Triton X-100-soluble
extracts from RAW264.7 cells or Leishmania promastigotes
were separated by SDS-PAGE and transferred to nitrocellulose. Membranes
were probed either with Leishmania EF-1 anti-peptide
antibodies or commercial anti-EF-1 . Lane 1,
Leishmania cell lysate probed with
anti-Leishmania EF-1 anti-peptide antibodies; lane
2, macrophage cell lysate probed with anti-Leishmania
EF-1 anti-peptide antibodies; lane 3, macrophage cell
lysate probed with commercial anti-EF-1 antibodies. D,
approximately 100 µg of cytosolic proteins from infected macrophages
were processed for immunoblotting as described above and probed with
Leishmania EF-1 -specific anti-peptide antibodies. The
results shown are from one of three independent experiments that
yielded similar results.
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The presence of Leishmania EF-1 in cytosol of infected
macrophages was also investigated using polyclonal antibody raised against Leishmania EF-1 peptide. The specificity of this
antibody for Leishmania EF-1 was established by
immunoblotting using total cell lysates of Leishmania and
macrophages. The presence of a single band in the region of
Leishmania EF-1 in lysates of Leishmania and
no detectable band in lysates of macrophages (Fig. 5C,
compare lanes 1 and 2) clearly shows that this
antiserum is highly specific for Leishmania EF-1 . The
specificity of anti-Leishmania EF-1 was confirmed using
purified EF-1 from Leishmania and macrophages (data not
shown). When the cytosolic fraction from infected macrophages was
subjected to immunoblotting with this anti-peptide antiserum, the
results showed (Fig. 5D) the presence of
Leishmania EF-1 in this fraction.
Direct Localization of Leishmania EF-1 in Infected
Macrophages--
Scanning, confocal, immunofluorescence microscopy
using antipeptide antisera was used to independently confirm the
presence of Leishmania EF-1 in the cytosol of infected
macrophages. Infected and control macrophages grown on coverslips were
fixed, permeabilized, and processed for immunofluoresence using either
anti-peptide antiserum specific for Leishmania EF-1 or
commercial anti-EF-1 antiserum that recognizes both
Leishmania and mammalian EF-1 . Using
Leishmania-specific anti-peptide antiserum, the results shown in Fig. 6, panels 2 and
3, demonstrate Leishmania EF-1 in the cytosol
of infected macrophages. As expected, staining of control, noninfected
macrophages using the Leishmania-specific antiserum showed
no signal (Fig. 6, panel 5), however, control cells showed
intense, diffuse fluorescence when commercial anti-EF-1 antibody was
used for staining (Fig. 6, panel 7). Taken together with the
immunoprecipitation and Western blotting findings, direct detection
using confocal microscopy, provides compelling evidence indicating the
presence of Leishmania EF-1 in the cytosolic fraction of
infected macrophages.

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Fig. 6.
Subcellular localization of
Leishmania EF-1 in infected
macrophages using confocal, immunofluorescence microscopy.
Macrophages were grown on coverslips and either untreated or infected
with L. donovani promastigotes for 16 h. Monolayers
were then washed and control (panels 4-7) and infected
(panels 1-3) macrophages were fixed with paraformaldehyde,
permeabilized using Triton X-100, and stained with either
Leishmania EF-1 -specific antibodies (panels 2 and 5) or anti-EF-1 commercial antibodies (panel
7). Panels 1, 4 (infected macrophages), and
6 (noninfected) represent differential interference contrast
images. Panel 3 represents superimposition of the images in
panels 1 and 2. Arrows in panels
1-3 mark the localization of Leishmania in infected
cells. The results shown are from one of two independent experiments
that yielded similar results.
|
|
Leishmania EF-1 Associates with Host SHP-1 in Vivo--
The
findings that Leishmania EF-1 bound to SHP-1 in
vitro and evidence that it accessed the cytosol of infected cells,
suggested that it may target SHP-1 in vivo. To examine this
possibility, macrophages were infected with promastigotes for 14-16 h.
Cytosolic fractions were then prepared from control and infected cells
for immunoprecipitation of SHP-1. Immune complexes were separated on
SDS-PAGE under nonreducing conditions followed by transfer to
nitrocellulose. Immunoblot analysis carried out using anti-EF-1 . (Fig. 7, lane 4) showed that
Leishmania EF-1 was associated with SHP-1 in
vivo, whereas the association of host-EF-1 with host SHP-1 was
not detectable.

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Fig. 7.
In vivo association of
Leishmania EF-1 with
host-SHP-1. A, macrophages were either left untreated
( Ld) or infected with Leishmania promastigotes
(+Ld) at an approximate parasite to cell ratio of 10:1.
After overnight (16 h) incubation, control and infected cells were
washed and cytosolic fractions were prepared as described under
"Experimental Procedures." The cytosolic fractions were incubated
with either rabbit anti-SHP-1 antibodies (lanes 3 and
4) or normal rabbit serum (lanes 1 and
2) for immunoprecipitation. Immune complexes were separated
on nonreduced SDS-PAGE followed by transfer to nitrocellulose and
probed with anti-EF-1 . Lanes 1 and 3 are
noninfected macrophages; lanes 2 and 4 are
Leishmania-infected macrophages. The position of
Leishmania EF-1 is indicated by an arrow.
B, immunoblotting to detect cathepsin D in the cytosolic and
particulate fractions from infected macrophages was carried out as
described in the legend to Fig. 5B. Lane 1,
cytosolic proteins (100 µg); lane 2, proteins from the
pellet fraction (100 µg). The results shown are from one of three
independent experiments that yielded similar results.
|
|
Leishmania EF-1 Attenuates IFN- -induced Activation of iNOS
Expression in Macrophages--
In parallel with its ability to
activate SHP-1, we examined whether the introduction of EF-1 into
cells would impact macrophage activation. Purified
Leishmania or macrophage EF-1 was introduced into
macrophages using Profect 1 reagent. After incubation for 2 h,
macrophages were stimulated with murine IFN- . Cells were then lysed,
separated on SDS-PAGE, transferred to nitrocellulose, and probed with
anti-iNOS. As shown in Fig. 8, the
delivery of purified, native Leishmania EF-1 , but not the
corresponding host protein into cells blocked the induction of iNOS
expression in response to cell treatment with interferon- . The same
blot was stripped and reprobed with anti-actin to control for protein
loading. Thus, Leishmania EF-1 was able to recapitulate
the deactivated phenotype of Leishmania-infected
macrophages.

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Fig. 8.
Leishmania EF-1
attenuates IFN- -induced activation of
iNOS expression in macrophages. Purified Leishmania or
macrophage EF-1 was introduced into macrophages using Profect 1 reagent as described in the legend to Fig. 4B. After
incubation for 2 h, macrophages were incubated with 5 units of
murine IFN- for 5 h at 37 °C. Cells were assayed for the
expression of iNOS essentially as described (4). The same blot was
stripped and reprobed with anti-actin to control for protein loading.
Lane 1, control cells; lane 2, cells incubated
with IFN- ; lane 3, preincubation with
Leishmania EF-1 followed by IFN- ; and lane
4, preincubation with macrophage EF-1 followed by IFN- . The
results shown are from one of three independent experiments that
yielded similar results.
|
|
 |
DISCUSSION |
Results from several recent studies have suggested that the
protein-tyrosine phosphatase SHP-1 plays a role in the pathogenesis of
Leishmania infection (4, 6, 7). Based upon the particular finding that infection of macrophages with Leishmania
results in SHP-1 activation (4, 7), we sought to determine whether a
Leishmania activator of SHP-1 could be found. To identify
potential SHP-1 interacting protein(s) from Leishmania,
affinity chromatography of Leishmania lysates was carried
out using GST-SHP-1 coupled to glutathione-Sepharose. This resulted in
the isolation of a 56-kDa SHP-1-binding protein that was identified as
EF-1 (Fig. 1).
The finding that SHP-1 and Leishmania EF-1 were binding
partners was unexpected because EF-1 is a highly conserved,
ubiquitously expressed protein in all eukaryotic cells with a diverse
range of regulatory properties (15, 17-19). Certainly the role that EF-1 is best known for, if not its most important one, is as a
GTP-binding protein involved in regulating the rate and fidelity of
protein translation (17, 18). EF-1 exists as a multimeric complex in
which the subunit binds to both GTP and aminoacyl-tRNA, whereas the
and subunits are involved in GDP-GTP exchange. EF-1 is
present in a significant molar excess in comparison to the other
subunits and this has led to the suggestion that excess, uncomplexed
EF-1 is available to participate in a range of other activities. For
example, EF-1 has been shown to regulate cell motility by assembling
actin filaments (20) and to regulate the activity of
phosphatidylinositol 4-kinase (21). The latter is likely related to the
ability of EF-1 to modulate actin organization because
phosphatidylinositol 4,5-bisphosphate regulates actin filament
structure through effects on actin-binding proteins (22). EF-1 from
T. brucei and rabbit reticulocytes has been show to bind
calmodulin, although EF-1  as the translational complex fails
to do so (15). Localization of EF-1 to the nucleus has led to the
suggestion that it may regulate transcription (23). In addition,
EF-1 has been shown to be a novel substrate of Rho-associated kinase
(24) and it is known that Rho family proteins are involved in
regulating phagocytosis (25). The recent finding that EF-1 is a
phagosome-associated protein also suggests a potential regulatory role
in phagocytosis (26).
Given that EF-1 is both highly conserved and ubiquitously expressed,
it was important to determine whether host EF-1 also interacted with
SHP-1. Of note was the finding that Leishmania EF-1
migrated more slowly than its human homologue during SDS-PAGE (Fig.
1B), suggesting the possibilities of structural and
functional differences. To examine this question further, L. donovani EF-1 and macrophage EF-1 were purified by
electrophoresis homogeneity (Fig. 2) and used to investigate possible
direct interactions with GST-SHP-1. The results shown in Fig.
3A clearly show that SHP-1 binds preferentially to EF-1
from Leishmania, as very little binding of macrophage
EF-1 was observed. It has previously been shown that EF-1 of
Trypanosoma brucei and mammalian origins directly interacts
with calmodulin and this interaction seems to require EF-1 in its
native conformation (15). Hence, as a positive control, binding assays
were performed using purified EF-1 s and calmodulin-agarose beads.
The findings that both macrophage and Leishmania EF-1
bound to calmodulin (Fig. 3B) clearly showed that the
purification scheme did not disturb the functional integrity of
macrophage EF-1 . Taken together, the data show that SHP-1 interacts
selectively with Leishmania EF-1 and suggest important structural and functional differences between these otherwise highly
homologous proteins.
The specificity of binding of the phosphatase to Leishmania
EF-1 suggested that the latter may be a unique SHP-1 regulator. Indeed, just as the Leishmania protein interacted
specifically with SHP-1, we found that it functioned as a
SHP-1-activating protein both in vitro (Fig. 4A)
and in vivo (Fig. 4B), whereas macrophage EF-1
had no such activities. The findings discussed thus far suggested a
potential model in which Leishmania EF-1 functions as a
virulence factor by activating SHP-1 leading to macrophage
deactivation. The requirement in this model for an interaction between
these two proteins had to be reconciled with the fact that SHP-1 is
predominantly cytosolic in distribution whereas Leishmania
reside within a membrane-bound vacuole. The question of whether
Leishmania EF-1 could access the macrophage cytosol was
addressed using three independent approaches and the evidence from each
indicated the presence of Leishmania EF-1 in the cytosol
of infected cells. These approaches included: 1) infection of
macrophages with 35S-labeled Leishmania followed
by immunoprecipitation of labeled EF-1 from cytosolic fractions
(Fig. 5A); 2) immunoblotting of the cytosol from infected
cells using anti-peptide antiserum specific for Leishmania
EF-1 (Fig. 5D); and 3) direct detection of
Leishmania EF-1 in the cytosol of infected macrophages
using Leishmania EF-1 -specific antiserum combined with
confocal microscopy (Fig. 6).
These findings indicate that Leishmania EF-1 was exported
from the phagosome where it could target host cell proteins. To examine
whether Leishmania EF-1 interacted with host SHP-1
in vivo, SHP-1 was immunoprecipitated from cytosol of
Leishmania-infected macrophages followed by immunoblotting
using anti-EF-1 . The results (Fig. 7B) clearly showed
that Leishmania EF-1 associated with SHP-1 in
vivo, whereas the association of host EF-1 with host SHP-1 was
not detectable. It is known that the mature form of cathepsin D is
present in the lumen of L. donovani containing phagosomes
(27, 28). Hence, cathepsin D was used as a marker of phagosome
disruption that may have occurred during preparation of cytosolic
fractions from infected macrophages. This analysis showed that the
subcellular fractionation did not lead to phagosome disruption as no
cathesin D was detected in the cytosol of infected cells even after
prolonged exposure of membranes to film (Fig. 5B).
To investigate the importance of the interaction of
Leishmania EF-1 with SHP-1, we examined whether the
introduction of EF-1 into cells would impact cell activation. The
results of this analysis showed that introduction of purified, native
Leishmania EF-1 , but not the corresponding host protein
into cells blocked the induction of iNOS expression in response to cell
treatment with interferon- (Fig. 8). Thus, Leishmania
EF-1 was able to recapitulate the deactivated phenotype of
Leishmania-infected macrophages (4). Taken together, these
results show that Leishmania EF-1 is a novel SHP-1
regulator capable of inducing macrophage deactivation. In light of the
findings that activation of host SHP-1 appears to be associated with
progressive leishmaniasis (4, 6-8) these results strongly suggest that
Leishmania EF-1 contributes to disease pathogenesis.
The identification of Leishmania EF-1 as a regulator of
host SHP-1 suggests that it may be a novel virulence factor. It also suggests a new paradigm for chronic intracellular infection in which
microbial factors directly modulate the activity of host cell
regulatory proteins leading to cell deactivation. Clearly, the findings
that vanadate treatment reverses the deactivated phenotype of
Leishmania-infected macrophages (4) and that SHP-1-deficient cells and mice show enhanced resistance to Leishmania
infection (8) are consistent with such a mechanism. A model such as
this raises at least two important questions. First, how does EF-1 from vacuole-bound Leishmania cross two membranes (the
parasite plasma membrane and the parasitophorous vacuole) to access
cytosolic SHP-1? Second, what is the mechanism of phosphatase activation?
Observations addressing the export of macromolecules from
Leishmania phagosomes are limited. However, because
Leishmania and other intracellular pathogens that reside
within phagosomes must access the cytosol to acquire essential
nutrients, it seems highly likely that there must be mechanisms by
which pathogen-derived molecules can travel in the opposite direction.
In this regard, recent work suggests that numerous Mycobacterium
bovis BCG proteins are released from phagosomes and can be found
in various intracellular compartments (29). Leishmania are
known to export a large range of proteins and other factors. For
example, both amastigotes and promastigotes secrete a complex range of
glycoconjugates including lipophosphoglycan that are surface
expressed and secreted (30). Leishmania also export a range
of proteophosphoglycans important for interactions within the sandfly
gut and for virulence in mammals. Several of these factors are released
into phagosomes (31-35) and at least two of these have also been
detected in parasite-free vesicles within macrophages (31, 34).
Leishmania use a conventional eukaryotic secretory pathway
to translocate proteins with signal sequences into the endoplasmic
reticulum (36). However, proteins exported by Leishmania
that lack a signal sequence have also been identified such as the
family of hydrophilic acylated surface proteins. Recently, an
acylation-dependent process of protein export in
Leishmania involving both palmitoylation and myristoylation has been described for the hydrophilic acylated surface protein (37). It has recently been shown that Leishmania phagosomes can access macromolecules from the macrophage cytosol (38) and Leishmania porins have been described that act to create
permeable phagosomes (39). In regard to export of EF-1 from the
phagosome, this is unlikely to involve a classical secretory mechanism
because the predicted amino acid sequence of EF-1 shows no classical signal sequence for secretion. Hence, this likely involves a
nonclassical secretory pathway, perhaps acylation-dependent
or otherwise.
As to the mechanism by which Leishmania EF-1 activates
SHP-1, it is known that SHP-1 activity is increased as a result of the
binding of its tandem Src homology 2 domains to
tyrosine-phosphorylated, immunoreceptor tyrosine-based inhibitory
motifs (ITIM) within regulatory proteins (11, 12). Our findings that
Leishmania EF-1 is tyrosine phosphorylated and that the
sequence contains two canonical ITIM
motifs2 is consistent with
such a model. This mechanism has to be reconciled, however, with the
fact that these ITIMs are conserved within mammalian EF-1 ,2 which does not activate SHP-1 (Fig. 4).
Structural differences between these homologues may account for these
divergent activities. For example, in addition to a difference in
molecular size (Fig. 1), alignment of mammalian and the EF-1 of
Leishmania revealed several significant structural
differences that could conceivably make these ITIMs or other motifs
unavailable in the host protein. This analysis showed2 that
despite its slower migration during SDS-PAGE the Leishmania protein has a shorter amino acid sequence compared with mammalian EF-1 by virtue of a 12-amino acid deletion. Comparison of the sequences showed several other critical amino acid substitutions that
could contribute to structural and functional differences.
Other than activation by ITIMs, the activity of SHP-1 may also be
influenced by its phosphorylation on tyrosine (40, 41) and by
interactions with phospholipids (42, 43). Thus, an additional
possibility to consider is that the binding of Leishmania EF-1 to SHP-1 may influence the subcellular distribution of the phosphatase and its proximity to a microdomain such as a lipid raft
enriched in an activating tyrosine kinases or phospholipid.
In summary, this study has demonstrated a selective interaction between
SHP-1 and Leishmania EF-1 and has identified the latter
as a novel SHP-1 regulator. By virtue of the fact that this interaction
leads to macrophage deactivation, Leishmania EF-1 is
identified as a candidate virulence factor. Evidence that
Leishmania EF-1 may be a novel virulence determinant
combined with its significant structural and functional differences
when compared with the corresponding host protein, suggest that it may
be an attractive target for anti-Leishmania drug or vaccine development. This potential may be even greater given the essential requirement for EF-1 in protein synthesis and other critical cell functions.
 |
ACKNOWLEDGEMENT |
The skillful technical assistance of
Christopher Walsh is gratefully acknowledged.
 |
FOOTNOTES |
*
This work was supported by Canadian Institutes of Health
Research Grants FRN-38005 (to D. N.) and MOP-8633 (to N. R.).The costs of publication of this
article were defrayed in part by the
payment of page charges. The article
must therefore be hereby marked
"advertisement" in
accordance with 18 U.S.C. Section
1734 solely to indicate this fact.
§
To whom correspondence may be addressed: Div. of Infectious
Diseases, University of British Columbia, Rm. 452D, 2733 Heather St., Vancouver, British Columbia V5Z 3J5, Canada.
E-mail: dnandan@interchange.ubc.ca.
**
To whom correspondence may be addressed: Div. of Infectious
Diseases, University of British Columbia, Rm. 452D, 2733 Heather St.,
Vancouver, British Columbia V5Z 3J5, Canada. Tel.: 604-875-4347; Fax:
604-875-4013; E-mail: ethan@interchange.ubc.ca.
Published, JBC Papers in Press, October 15, 2002, DOI 10.1074/jbc.M209210200
2
D. Nandan, A. Cherkasov, T. Yi, and N. Reiner, submitted for publication.
 |
ABBREVIATIONS |
The abbreviations used are:
SHP-1, Src homology
2 domain containing tyrosine phosphatase;
EF-1 , elongation
factor-1 ;
iNOS, inducible nitric-oxide synthase;
GST, glutathione
S-transferase;
pNPP, p-nitrophenyl phosphate;
IFN- , interferon- ;
ITIM, immunoreceptor tyrosine-based inhibitory
motif.
 |
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