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J. Biol. Chem., Vol. 278, Issue 32, 30193-30198, August 8, 2003
Novel Antioxidant Role of Alcohol Dehydrogenase E from Escherichia coli*![]() ![]() From the Departament de Ciències Mèdiques Bàsiques, Facultat de Medicina, Universitat de Lleida, 25198 Lleida, Spain
Received for publication, April 25, 2003 , and in revised form, May 30, 2003.
Alcohol dehydrogenase E (AdhE) is an Fe-enzyme that, under anaerobic conditions, is involved in dissimilation of glucose. The enzyme is also present under aerobic conditions, its amount is about one-third and its activity is only one-tenth of the values observed under anaerobic conditions. Nevertheless, its function in the presence of oxygen remained ignored. The data presented in this paper led us to propose that the enzyme has a protective role against oxidative stress. Our results indicated that cells deleted in adhE gene could not grow aerobically in minimal media, were extremely sensitive to oxidative stress and showed division defects. In addition, compared with wild type, mutant cells displayed increased levels of internal peroxides (even higher than those found in a katG
strain) and increased protein carbonyl content. This pleiotropic phenotype
disappeared when the adhE gene was reintroduced into the defective
strain. The purified enzyme was highly reactive with hydrogen peroxide (with a
Ki of 5 µM), causing inactivation
due to a metal-catalyzed oxidation reaction. It is possible to prevent this
reactivity to hydrogen peroxide by zinc, which can replace the iron atom at
the catalytic site of AdhE. This can also be achieved by addition of
ZnSO4 to cell cultures. In such conditions, addition of hydrogen
peroxide resulted in reduced cell viability compared with that obtained
without the Zn treatment. We therefore propose that AdhE acts as a
H2O2 scavenger in Escherichia coli cells grown
under aerobic conditions.
Under anaerobic conditions Escherichia coli carries out mixed-acid fermentation of sugars. One of the major products is ethanol, which is synthesized from acetyl coenzyme A by two consecutive Fe2+ and NADH-dependent reductions, catalyzed by alcohol dehydrogenase E (AdhE)1 (1). This enzyme, encoded by the adhE gene (2), belongs to the group III Fe-activated dehydrogenases and shares a high degree of structural homology with other microbial alcohol dehydrogenases (3). AdhE is also known as pyruvate-formate lyase-deactivase because it converts the active radical form of pyruvate-formate lyase into the non-radical form (4, 5). AdhE is abundantly synthesized (about 3 x 104 copies per cell) during anaerobic growth on glucose and forms helical structures, called spirosomes, which are around 0.22 µm long and contain 4060 AdhE molecules (6). This structure has also been detected in Entamoeba hystolitica (7), Salmonella typhimurium (8), Yersinia enterolytica (9), Lactobacillus brevis, and Lactobacillus reuteri (10, 11).
When E. coli cells are shifted from anaerobic to aerobic conditions, transcription of the adhE gene is reduced and maintained within 10% of the range found under anaerobiosis (1215). Translation is also regulated and requires RNase III (15, 16). AdhE has been identified as one of the major targets when E. coli cells were submitted to hydrogen peroxide stress (17). In fact, under aerobic conditions, AdhE has no assigned function, accounts for about 1% of total protein, and is inactivated by metal-catalyzed oxidation (18). This apparent wastefulness prompted us to investigate why this enzyme has been maintained under aerobic conditions. Evidences about the relationship between AdhE and protection against oxidative stress are provided.
Strains and Culture ConditionsThe merodiploid strain E. coli ECL4000 (MC4100 adhE+ (adhE-lacZ)) was used
as the wild type parental strain
(18,
19). Isogenic strains were
used in all experiments. A previously obtained null adhE::kan strain
(ECL4002) was also used (20).
An E. coli strain katG::tet (PEL1) was constructed by P1
transduction (21) from UM202
(22). The DHB4 strain was a
kind gift from J. Beckwith and was also used as a wild type strain
(23). S. typhimurium
LT2 was from ATCC (catalog number E23564) and Serratia marcescens was
from Colección Española de Cultivos Tipo (Valencia, Spain,
catalog number 846). Cells were grown at 30 °C either in Luria broth (LB) medium (0.5% yeast extract, 1% NaCl, and 0.5% tryptone) or minimal medium (64 mM K2HPO4, 34 mM NaH2PO4, 20 mM (NH4)2SO4, 0.1 mM MgSO4, 10 µM CaCl2, and 1 µM FeSO4, pH 7.4) supplemented with one of the following carbon and energy sources: glucose (10 mM), glucuronate (10 mM), gluconate (10 mM), acetate (30 mM), succinate (15 mM), fucose (10 mM), manitol (10 mM), glycerol (20 mM), or casein acid hydrolysate (0.1% w/v). Solid media contained 1.5% Bacto-agar (Difco) in LB. Aerobic cultures of 10 ml were grown in 100-ml flasks shaken at 250 rpm. Anaerobic cultures were grown in 100-ml flasks filled to the brim. When appropriate, antibiotics (Sigma) were added at the following concentrations: 100 µg/ml kamamycine and 25 µg/ml tetracycline. To study ECL4002 auxotrophies amino acids were added to minimal medium-glucose at 100 µg/ml each and cells were aerobically cultured. Sensitivity to Stress ConditionsExponentially growing cells (A600: 0.3) were treated with the stressing compound, which was directly added to the growth medium at the concentrations and periods indicated for each experiment. Untreated cultures were incubated in parallel over the same periods. Sensitivity to the treatment was determined by serially diluted (1/10) bacterial suspension with phosphate-buffered saline and then plated by triplicates on LB agar. Enzymatic Activity AssaysCells were disrupted by sonication in an ice bath, and the centrifuged extracts were assayed for the following enzyme activities, as described: ethanol dehydrogenase (15), aconitase (24), malate dehydrogenase (25), catalase, and superoxide dismutase (26). Protein concentration was determined by the Bradford method, using bovine serum albumin as standard. Western Blot AnalysisOxidized proteins in cell extracts were revealed immunochemically by their carbonyl content (27) after derivatization with dinitrophenylhydrazine (17). The anti-dinitrophenyl (DNP) antibody (Dako) was used at 1:5,000 dilution. Anti-AdhE Western blot was performed using the primary antibody at 1:2,000 dilution. In both cases, the secondary antibody was a goat anti-rabbit conjugated with alkaline phosphatase (Tropix) used at 1:25,000 dilution. Measurement of Intracellular Oxidation LevelThe oxidant-sensitive probe H2DCFDA was used to measure the intracellular peroxide levels (28). Cells growing aerobically in LB (A600: 0.3) were washed with 10 mM potassium phosphate buffer, pH 7.0, and incubated for 30 min in the same buffer with 10 µM H2DCFDA (dissolved in dimethyl sulfoxide). Cells were washed, resuspended in the same buffer, and disrupted by sonication. Cell extracts (100 µl) were mixed in 1 ml phosphate buffer and fluorescence intensity was measured using a Shimadzu RF 5000 spectrofluorimeter (excitation, 490 nm; emission, 519 nm). Emission values were normalized by protein concentration. In Vitro Inactivation Assays of AdhEPurified AdhE (2.5 µM) in 50 mM Tris-HCl, 160 mM NaCl, pH 8.5, was incubated for 4 min at room temperature with different concentrations of either KO2 (superoxide donor) plus catalase (50 units) or H2O2 and ethanol dehydrogenase was assayed. Potassium superoxide (KO2) was maintained in dimethyl sulfoxide due to its instability in aqueous solutions. KO2 concentration was monitored spectrophotometrically (e260 = 2086 M1 cm1) (29). Other MethodsTotal cellular iron was determined under reducing conditions (30), with bathophenanthroline sulfonate as chelator (31). Quantification of AdhE expression was carried out by Laurell rocket immunoelectrophoresis (32), according to a calibration curve (not shown) obtained with AdhE purified from strain ECL4000 as described previously (18). For DNA staining, cells were resuspended for 10 min in 70% (v/v) ethanol, washed and incubated with 1 µg/ml diaminophenylindole in phosphate-buffered saline for 10 min, and then rinsed with the same buffer. Fluorescence was viewed using a Nikon fluorescence microscope and images were taken using a Sony camera system. To obtain scanning electron microscopy images, exponentially growing cells were washed in 0.1 M phosphate potassium buffer, pH 7.0, and fixed for 30 min in phosphate-buffered glutaraldehyde (2.5% v/v). Cell suspension was transferred to silanized glass. After washing with potassium phosphate, cells were postfixed with osmium tetraoxide (1% v/v) for 30 min, followed by 10 min washes with 30, 50, 70, and 90% acetone. Cells were then washed 3 times with 100% acetone (30 min each) and dried. After carbon evaporation, gold was added to the cells (Balzers ScD 050 Sputer Coater), and samples were observed using a scanning electronic microscope (DMS 940 A Zeiss).
Growth Defects of ECL4002 StrainWhen E. coli grows anaerobically on glucose, full expression of the adhE gene gives about 30,000 molecules/cell. In contrast, the amount of AdhE protein present under aerobic conditions, as measured by both Western blot and immunoelectrophoresis (see "Experimental Procedures"), was only 30% of that present under anaerobic conditions (9.6 ± 0.7 ng AdhE/µg total protein versus 28.1 ± 3.7 ng AdhE/µg total protein). Consequently, when oxygen was present in the culture, there were 10,000
molecules of AdhE per cell, of which 70% were inactive. It thus seemed
inefficient to synthesize such amounts of a 96-kDa protein that apparently had
no physiological role. An explanation for this apparent paradox was found
during the study of the adhE strain (ECL4002).
ECL4002 cells were unable to grow aerobically in minimal medium on any of
the carbon sources tested (glucose, succinate, fucose, acetate, glucuronate,
gluconate, manitol, and glycerol). Aerobic metabolism of these sugars did not
require any AdhE activity. This mutant strain grew under aerobic conditions in
LB medium, but with a duplication time of 60 min (whereas wild type cells
duplicated in 35 min in this medium). Addition of 0.1% casein acid hydrolysate
to the minimal medium-glucose allowed growth but duplication time increased
progressively over time. Analysis of amino acids needed for growth revealed
that
As expected, the
The growth defects of
AdhE Deletion Causes an Oxidative Stress PhenotypeDuring
our study of
The fluorescent probe H2DCFDA was used to measure intracellular
peroxide levels (Fig.
2B). Basal levels of endogenously generated peroxides
were 5 times greater in
Several enzyme activities known to be affected by reactive oxygen species
were measured in cells grown aerobically in LB
(Fig. 2C). Aconitase,
an enzyme with an Fe/S cluster, has been reported to be very sensitive to
oxidative stress (31,
34,
35). In
The endogenous oxidative stress measured with H2DCFDA could have
been due to a defective iron metabolism, resulting in iron accumulation within
the cell, as reported in several E. coli mutant strains
(37). To investigate this
possibility, total iron was measured using batophenanthroline sulfonate (see
"Experimental Procedures"). Results demonstrated that there were
no significant differences between wild type and
One of the markers under oxidative stress conditions is the formation of
carbonyl groups on proteins due to modification of some amino acid side chains
(27). Anti-DNP Western blot
experiments revealed that in Many microorganisms, including human pathogens, also synthesize a multifunctional alcohol dehydrogenase. These enzymes are members of the "iron-dependent" dehydrogenase family and share a high sequence homology to AdhE from E. coli. To verify whether these homologues were also major targets under H2O2 stress conditions, wild type cells from other two enterobactericeae, S. typhimurium and S. marcescens, were submitted to 10 mM H2O2 for 60 min, and protein oxidation was analyzed by anti-DNP Western blot and compared with E. coli (Fig. 2E). As expected, a band corresponding to AdhE became strongly carbonylated in both S. typhimurium and S. marcescens, which means that homologues of AdhE exhibit the same reactivity to H2O2.
Comparison Between
Peroxide levels measured in
AdhE is Highly Reactive to H2O2The reactivity between AdhE and H2O2 was observed in vivo measuring the rapid inactivation of ethanol dehydrogenase activity following the addition of 0.5 or 1 mM H2O2 for 5 min to ECL4000 cultures. An inactivation of 55 and 80% was, respectively, obtained. Under these conditions, aconitase was only inactivated 25 and 40%, respectively. AdhE inactivation by H2O2 was irreversible because addition of 10 µg/ml chloramfenicol to ECL4000 cells simultaneous to H2O2 treatment prevented the recovery of ethanol dehydrogenase activity. When no antibiotic was added, AdhE activity increased in parallel with the duplication of cells (not shown). Using pure preparations of AdhE, the plot of H2O2 concentration versus enzyme inactivation gave an inactivation constant (Ki) for H2O2 of 5 µM (Fig. 4A). However, when KO2 was used as a superoxide donor (in the presence of catalase to remove spontaneously formed H2O2), AdhE reactivity was clearly lower (Ki for superoxide was 120 µM) (Fig. 4A). As expected, inactivation of AdhE by H2O2 resulted in carbonyl formation (Fig. 4B). Taken together, these results were consistent with the idea that AdhE plays an important role in combating H2O2 stress, but not superoxide stress.
Zn Inactivation of AdhE Generates Cells Highly Sensitive to Oxidative
StressAssuming the aerobic role of AdhE as an
H2O2 scavenger, the addition of any inhibitor of its
scavenging activity should result in cells highly sensitive to oxidative
stress, resembling
AdhE displays its activity under anaerobic or microoxic conditions; in aerobiosis, transcription is down-regulated and the enzyme is inactivated by metal-catalyzed oxidation. To date, no role has been assigned to this enzyme when oxygen is present. Our results indicated that cells lacking AdhE showed markers of a stress situation with a phenotype resembling that of a cell deficient in antioxidant defense systems. This conclusion was based on the following observations. (i) The increased H2O2 concentrations inside the cell, measured with H2DCFDA. (ii) Inactivation of aconitase, an enzyme highly sensitive to oxidative stress (31, 34, 35, 40), which in this situation, liberates iron ions present in its Fe/S cluster after oxidation (41). This, in turn, may further increase production of reactive oxygen species. (iii) Increased levels of catalase activity, which are probably the result of OxyR activation. This transcription factor becomes activated when H2O2 concentration is 105 M or higher (42). (iv) Filamentous morphology may indicate the activation of the SOS system (43), due to damage to DNA produced by H2O2 (44). SOS activation blocks septum formation, producing cells longer than normal (45). (v) Auxotrophies observed in adhE could not be explained solely on the basis of
a higher susceptibility to inactivation of enzymes implicated in the amino
acid biosynthesis. This could also have been due to membrane permeation
produced by reactive oxygen species as described in sod cells
(46). The results clearly demonstrated that AdhE was able to react with H2O2, both in vivo and in vitro, producing an irreversible inactivation of the enzyme. This was indicated by the lack of recovery when chloramfenicol and H2O2 were simultaneously added to the culture. This scavenging power would imply an equimolar reaction between H2O2 and AdhE. Although a reducing cycle (with Fe3+ being recycled to Fe2+, perhaps by NAD(P)H+ or superoxide) would make the system more efficient by allowing to scavenge more than 1 molecule of H2O2 per molecule of AdhE, several indirect results seemed to rule out this possibility. First, AdhE has lower binding affinity to ferrous ion than to ferric ion.2 And second, propanediol oxidoreductase, an enzyme with the same iron-binding signature is inactivated by metal-catalyzed oxidation due to the modification of a highly conserved histidine residue, which is essential for iron binding (39, 47).
AdhE is important for controlling H2O2 homeostasis
under normal aerobic conditions because reactive oxygen species produced in
the electron transport chain are of the same order of magnitude as
Ki for H2O2 (5
µM). A similar role has been proposed for alquil hydroperoxide
reductase (AhpCF) (48).
Although it would be difficult to establish which is more important, in
contrast to
The observation that these mutant cells exhibited lower resistance to
freeze-thawing and to lysozyme treatment (not shown) led us to believe that
There is an increasing list of microorganisms with orthologues to AdhE sharing a 6090% sequence homology (Fig. 6). These include human pathogens, which give this enzyme clinical importance. It seems reasonable to assume that all these enzymes should act in the same way that AdhE did in E. coli. The results obtained in S. typhimurium and S. marcescens are in agreement with this assumption. Additionally, in a systematic study of genes involved in survival to macrophage attack in S. typhimurium, it was observed that adhE mutant cells were more sensitive than wild type cells (53). The role of these orthologues as H2O2 scavengers provide clues to explain why even microorganisms that neither produce alcohols nor use them as carbon sources (Listeria, Staphylococcus, and Streptococcus) have maintained this enzyme.
It would be especially interesting to be able to inactivate these AdhEs in bacterial pathogens making them more susceptible to the immune system. From previous studies (38), we know that Zn can replace Fe easily in these dehydrogenases in vitro. As we have demonstrated in this study, treatment of E. coli cells with ZnSO4 inactivated AdhE, and this Zn-AdhE was not able to perform the Fenton reaction. More interestingly, these Zn-treated E. coli cells became more susceptible to oxidative stress. It is possible to speculate on the possible role of Zn treatment in infections involving such pathogen microorganisms. Developing specific inhibitors to AdhE could be of great interest in the near future.
* This work was funded by Grants BMC2001-0874 from Ministerio de Ciencia y Tecnología (Spain) and 2000 SGR 0042 from Generalitat de Catalunya (Spain). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
1 The abbreviations used are: AdhE, alcohol dehydrogenase E; AhpCF, alquil
hydroperoxide reductase; H2DCFDA,
2',7'-dichlorofluorescein diacetate; LB, Luria broth; DNP,
dinitrophenyl.
2 P. Echave, J. Tamarit, E. Cabiscol, and J. Ros, unpublished results.
We thank the Service of de Microscopia Electrònica, Universitat de Lleida, for technical support and Malcolm Hayes for editorial support.
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