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J. Biol. Chem., Vol. 278, Issue 33, 30652-30660, August 15, 2003
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**
From the
Instituto de Investigaciones
Citológicas, Amadeo de Saboya 4, Valencia 46010, Spain,
¶Cold Spring Harbor Laboratory, Cold Spring
Harbor, New York 11724, and ||Department of
Immunology, University of Washington Medical Center, Seattle, Washington
98195
Received for publication, December 11, 2002 , and in revised form, June 3, 2003.
| ABSTRACT |
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-cell treatment and was negatively regulated by
phosphorylation of the C-terminal tail of PTEN by the protein kinase CK2. The
proteolytic PTEN fragments displayed reduced protein stability, and their
capability to interact with the PTEN interacting scaffolding protein
S-SCAM/MAGI-2 was lost. Interestingly, S-SCAM/MAGI-2 was also cleaved by
caspase-3. Our findings suggest the existence of a regulatory mechanism of
protein stability and PTEN-protein interactions during apoptosis, executed by
caspase-3 in a PTEN phosphorylation-regulated manner. | INTRODUCTION |
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Caspases (cysteinyl-directed aspartate-specific proteases) are a family of highly specific proteases that play a key role during the apoptotic cell death. Caspases, constitutively expressed as inactive zymogens, are activated in a proteolytic cascade, in which initiator caspases, such as caspase-8, are activated by autoproteolysis in response to apoptotic cell stimulation. Initiator caspases then proteolytically activate downstream executioner caspases, such as caspase-3, which target a restricted set of structural and signaling proteins. Cleavage of these substrates accounts for cell death, as well as the phenotypic alterations characteristic of apoptosis (16). Thus, the identification of caspase targets is crucial to understand how these caspases control the programmed cell death. In this regard, caspase-3 is the major apoptotic executioner protease and directly cleaves most of the proteins that are proteolyzed during apoptosis (17, 18).
PTEN plays a critical role in regulating cell survival; however, the regulation of its biological activity remains poorly understood. In this report, we describe that both the tumor suppressor PTEN and the scaffolding protein S-SCAM/MAGI-2 are targets of caspase-3. Interestingly, our results indicate that the proteolysis of PTEN by caspase-3 is negatively regulated by CK2-mediated phosphorylation of the phosphatase. The implications of the caspase-3-mediated proteolysis of PTEN, as a potential regulatory mechanism of protein stability and PTEN-protein interactions, are discussed.
| EXPERIMENTAL PROCEDURES |
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(Sigma) was used
at 100 ng/ml (for U87MG cells) or 20 ng/ml (for HeLa S3 cells). In some
experiments, TNF
was used in combination with cycloheximide (10 ng/ml).
Recombinant active His-tagged caspase-3 was purified from bacteria with
nickel-nitrilotriacetic acid-agarose beads by standard procedures and used at
100 ng/µl for in vitro proteolysis assays. Recombinant active
human caspase-9 was from MBL and was used at 20 milliunits/µl. Human
recombinant CK2 holoenzyme was from Roche Applied Science and was used at 6
microunits/µl. The rabbit polyclonal antibody against the N terminus of
PTEN was raised against residues 116 of human PTEN. The monoclonal
antibodies against caspase-3, caspase-7, and caspase-9 have been described
previously (20,
21). The rabbit polyclonal
antibodies anti-PARP and anti-ERK1/2 were from Santa Cruz Biotechnology, Inc.
The anti-HA and anti-Myc monoclonal antibodies were 12CA5 and 9E10,
respectively.
Cell Lysis, Immunoblot, and Cell Fractionation in Triton X-100 Transfected COS-7 cells were rinsed in ice-chilled PBS and lysed in Buffer B (50 mM Tris-HCl, pH 7.5, 150 mM NaCl, 1% Nonidet P-40, 1 mM phenylmethylsulfonyl fluoride, 1 mg/ml aprotinin, 2 mM Na3VO4, 20mM Na4P2O7) and then the cell lysates were centrifuged (14000 rpm, 10 min at 4 °C), and the supernatants were used for immunoprecipitation or pull-down experiments, as indicated. For cell lysis of transfected U87MG cells (see Fig. 5B and Fig. 6A) and HeLa S3 cells (see Fig. 5C), all cells, attached and floating, were collected by centrifugation and washed once with ice-chilled PBS. Then, cells were lysed in SDS-PAGE sample buffer. For the fractionation of the cells in Triton X-100 (see Fig. 5A), transfected U87MG cells were rinsed in ice-chilled PBS and lysed in Buffer A (50 mM Tris-HCl, pH 7.5, 100 mM NaCl, 1% Triton X-100, 1 mM EDTA), followed by centrifugation (14000 rpm, 10 min at 4 °C), and the supernatant was considered as the Triton X-100-soluble fraction. The pellet was further extracted with SDS-PAGE sample buffer during 5 min at 95 °C, followed by centrifugation (14000 rpm, 5 min at room temperature), and the supernatant was considered as the Triton X-100-insoluble fraction. For the measurement of caspase-3 activity in cell extracts, transfected U87MG cells were lysed in NPM buffer (50 mM PIPES, pH 7.0, 50 mM NaCl, 5 mM EGTA, 2 mM MgCl2, 100 µM phenylmethylsulfonyl fluoride, 1 mM dithiothreitol, 2 µg/ml aprotinin) containing 0.1% Triton X-100.
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Cell Culture, Transfections, and [35S]Methionine Labeling of ProteinsCOS-7 cells were grown in Dulbecco's modified Eagle's medium containing 5% heat-inactivated fetal bovine serum. HEK293, HeLa S3, and U87MG cell lines were grown in Dulbecco's modified Eagle's medium containing 10% heat-inactivated FBS. U87MG cells were transfected using FuGENE 6 (Roche Applied Science) following the recommendations of the manufacturer. COS-7 cells were transfected by the DEAE-dextran method. [35S]Methionine labeling and purification of HA-tagged PTEN or Myc-tagged S-SCAM was carried out in transfected COS-7 cells as described (12). Briefly, transfected COS-7 cells were incubated for 1 h in methionine-free Dulbecco's modified Eagle's medium (Sigma) and then cells were labeled for 4 h with [35S]methionine (100 µCi/µl), rinsed in PBS, and lysed in lysis Buffer B, as indicated above. The HA-tagged or Myc-tagged proteins were immunoprecipitated from the lysates with the anti-HA 12CA5 or the anti-Myc 9E10 monoclonal antibody, respectively, plus protein A-Sepharose beads, washed four times with HNTG (20 mM HEPES, pH 7.5, 150 mM NaCl, 0.1% Triton X-100, 1% glycerol), and used for the in vitro proteolysis experiments. Pulse-chase experiments of 35S-labeled PTEN were performed as described (12).
In Vitro Proteolysis Experiments and Caspase-3 Activity Assays Preparation of the HEK293 cellular extracts and activation of the caspase cascade with dATP were performed as described (21). For the in vitro proteolysis of PTEN by the HEK293 cellular extracts, purified 35S-labeled HA-PTEN wild type or the indicated mutations, from COS-7 transfected cells, were incubated with 35 µl of the non-activated or the dATP-activated HEK293 cellular extracts at 30 °C. Immunodepletions were performed by sequential incubations of cellular extracts with caspase-specific antibodies and protein G-Sepharose. For the in vitro proteolysis by caspase-3 or caspase-9, Myc-S-SCAM, HA-PTEN, or GST-PTEN, wild type, or the indicated mutations were incubated with recombinant active caspase-3 (100 ng/µl) or caspase-9 (20 milliunits/µl) in 35 µl of NPM buffer at 30 °C. At the indicated times, equal aliquots of each sample were placed on 15 µl of 2x SDS-PAGE sample buffer, boiled, resolved on SDS-PAGE gels under reducing conditions, and analyzed by autoradiography or by immunoblot. Caspase-3 activity assays from U87MG cell extracts were performed using the caspase-3 colorimetric substrate DEVD-pNA. Briefly, U87MG cells were lysed as indicated above, and 0.2 mg of protein extract was diluted 1:1 in NPM buffer containing 20 µM DEVD-pNA. Samples were incubated at 30 °C for 30 min, and DEVD-pNA hydrolysis was measured by absorbance at 405 nm.
GST Fusion Proteins, in Vitro Kinase Assays, and GST Pull-down ExperimentsThe GST fusion proteins were expressed in bacteria and purified with glutathione-Sepharose using standard procedures. In vitro CK2 kinase assays of the GST fusion proteins were done as described (12). For GST pull-down experiments, COS-7 cells transfected with HA-PTEN wild type or mutations were lysed in lysis Buffer B as indicated above, and 0.5 mg of the cell lysates were incubated for 2 h on ice with 2 µg of the GST-(S-SCAM)-PDZ 2 fusion protein, followed by the addition of glutathione-Sepharose beads and further incubation for 2 h under constant shaking. Then, samples were washed four times with HNTG buffer, resolved on 10% SDS-PAGE gels, and analyzed by immunoblot with the anti-HA monoclonal antibody 12CA5.
| RESULTS |
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Next, the involvement of phosphorylation in PTEN cleavage was investigated. In vitro proteolysis assays were performed using the phosphorylation-defective HA-PTEN S370A/S385A mutation (DMA), which targets the two major residues of PTEN phosphorylated by CK2 (12, 13; see also Fig. 4B). Incubation of HA-PTEN DMA with activated extracts led to a prominent proteolysis of the PTEN molecule (Fig. 1B, lanes 58), generating three bands of lower molecular mass: two faster migrating bands (50 and 37 kDa) that comigrated with the two cleavage products from HA-PTEN wild type (double-head arrows) and an additional band of 53 kDa. The intensity of the 50-kDa band, but not the 37-kDa band, was increased in the HA-PTEN DMA mutant, compared with HA-PTEN wild type (see below). Moreover, the time course of the proteolysis showed that the HA-PTEN DMA mutant was cleaved faster than the HA-PTEN wild type. PTEN residues Ser380, Thr382, and Thr383 are also involved, to a minor extent, in the phosphorylation of PTEN by CK2 (12). Accordingly, a HA-PTEN S380A/T382A/T383A mutation (TMA) was also tested for proteolytic cleavage, as above. As shown, the proteolysis pattern of HA-PTEN TMA was indistinguishable with that of HA-PTEN wild type (Fig. 1C). The proteolysis of the HA-PTEN S370E/S385E mutation (DME), which mimics the phosphorylation of the residues Ser370 and Ser385 observed in PTEN wild type, was also analyzed. Upon incubation with activated extracts, HA-PTEN DME showed a proteolysis pattern analogous to that observed for HA-PTEN wild type (Fig. 1D). Taken together, these results demonstrate that HA-PTEN DMA mutation is cleaved more efficiently and contains more target sequences for proteolysis by activated cellular extracts than HA-PTEN wild type. This suggests that the phosphorylation of residues Ser370 and/or Ser385 negatively regulates the cleavage of PTEN by caspases.
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To identify the caspase-3 cleavage sites on PTEN, experiments were performed using mutations that affect putative caspase-3-like sites at the C-terminal portion of PTEN (Asp301, Asp371, Asp375, and Asp384; see Fig. 3B). Mutation of Asp301 and Asp384 to Asn (D301N and D384N) abrogated the appearance of the 37- and 54-kDa bands, respectively, upon incubation with recombinant caspase-3 (Fig. 3A, lanes 79 and 1012). This implicates these residues are sites for cleavage by caspase-3. Analogous mutation of the residues Asp371 or Asp375 alone had no effect in the proteolysis of PTEN by the caspase-3 (data not shown); however, the combined mutation of these two residues (D371N/D375N; CM2) abrogated the appearance of the 50-kDa band (Fig. 3A, lanes 1315), indicating that the mutation of the two caspase putative target sequences at Asp371 and Asp375 is necessary to abolish the cleavage of PTEN in this region. The combined mutation of the critical Asp in the three target sequences found within the CK2 phosphorylated region (D371N/D375N/D384N; CM3) eliminated the appearance of the 50- and 54-kDa bands upon incubation with caspase-3 (Fig. 3A, lanes 1618). Finally, the combined mutation of all the caspase target sequences found in PTEN (D301N/D371N/D375N/D384N; CM4) completely blocked the cleavage of PTEN by the caspase-3 in vitro (Fig. 3A, lanes 1921). Altogether, these results demonstrate that caspase-3 cleaves the tumor suppressor PTEN at several target sites within the C-terminal domain.
CK2 Phosphorylation Blocks PTEN Cleavage by Caspase-3To test the direct role of CK2 phosphorylation of the C-terminal tail of PTEN on its cleavage by caspase-3, experiments were performed using recombinant active caspase-3 and non-phosphorylated and CK2-phosphorylated GST-PTEN fusion proteins. As shown in Fig. 4A (see also Fig. 2C), GST-PTEN was cleaved by caspase-3 in an identical manner as HA-PTEN. Also, GST-PTEN wild type was efficiently phosphorylated by CK2 in vitro, whereas phosphorylation of the GST-PTEN DMA mutation was severely impaired (Fig. 4B; see also Ref. 12). Remarkably, after phosphorylation of GST-PTEN wild type by CK2, caspase-3 cleavage at the PTEN C-terminal tail was abolished, whereas no effect of CK2 was observed on the cleavage of GST-PTEN DMA (Fig. 4C). These results demonstrate that phosphorylation of PTEN by CK2 blocks PTEN cleavage at its C terminus.
Caspase-3-mediated Cleavage of PTEN in VivoTo ascertain
whether PTEN is cleaved by caspases in vivo, we examined by
immunoblot the status of PTEN protein ectopically expressed in the PTEN-null
cell line U87MG, using an antibody raised against the N terminus of PTEN. When
expressed in U87MG cells, PTEN was detected in both Triton X-100-soluble and
-insoluble fractions (Fig.
5A). Remarkably, a distinctive pattern of PTEN bands was
observed in the insoluble fraction that included the PTEN full-length band
(upper band) and three faster migrating bands, which were similar to
that observed for the proteolysis of the PTEN DMA mutation by the caspase-3
in vitro. The appearance of these three faster migrating bands
increased upon cell stimulation with the pro-apoptotic cytokine TNF
(Fig. 5A, lane
4). This cleavage was partially prevented by cell treatment with a
specific caspase-3-selective inhibitor (z-DEVD-fmk) or with a broad spectrum
caspase inhibitor (Boc-Asp(Ome)-fmk (Fig.
5B, lanes 2 and 3, respectively).
Finally, only the PTEN full-length band was observed in the
caspase-insensitive PTEN CM4 mutation (Fig.
5B, lane 4). We next tested whether endogenous
PTEN is cleaved by caspases during TNF
-induced apoptosis, using HeLa S3
cells that harbor wild type alleles of PTEN
(22). As observed, cleavage of
endogenous PTEN was observed during TNF
-induced apoptosis in a time
course-dependent manner and was partially inhibited by preincubation of the
cells with the caspase-3 inhibitor (Fig.
5C, upper panel). The extent of caspase-3
activation upon the distinct conditions, as monitored by the cleavage of the
caspase-3-specific protein substrate, PARP, is shown
(Fig. 5C, middle
panel). Note that only partial inhibition of PARP cleavage by z-DEVD-fmk
was achieved under our experimental conditions. The expression of the
mitogen-activated protein kinases ERK1/2 is also shown as a control of protein
loading (Fig. 5C,
lower panel). These results indicate that endogenous PTEN is cleaved
in HeLa S3 cells during TNF
-induced apoptosis in a caspase-3-dependent
manner and corroborate the results obtained both in vitro and in
vivo with recombinant PTEN.
The cleavage pattern of the lipid-phosphatase inactive PTEN G129E mutation was also investigated in U87MG cells. Interestingly, the G129E PTEN mutation was less susceptible to cleavage than PTEN wild type (Fig. 6A, upper panel), suggesting that PTEN catalytic activity could affect caspase-3 activity in U87MG-transfected cells. To test this possibility, caspase-3 activity was measured in cell extracts from U87MG cells transfected with PTEN (Fig. 6B). As shown, caspase-3 activity was increased in extracts from wild type PTEN-transfected cells but not on those from cells transfected with G129E PTEN. Altogether, these results indicate that PTEN is cleaved by caspase-3 in vivo at the target sites identified in our in vitro studies and suggest a role for PTEN in the regulation of caspase-3 activity.
Caspase-3 Proteolysis May Affect PTEN Protein Stability and PTEN/S-SCAM InteractionsThe cleavage of PTEN by caspase-3 removes the C-terminal portion of PTEN, which has been involved in the regulation of PTEN stability and half-life, as well as in the binding of PTEN to PDZ domain-containing proteins (14). To test the consequences of caspase-3 cleavage on PTEN stability, the degradation of PTEN deletion mutants mimicking the cleavage of the protein by caspase-3 (residues 1384, 1375, 1371, and 1301) was measured by pulse-chase experiments. COS-7 cells expressing HA-PTEN wild type or C-terminal deletions were 35S-labeled, and degradation plots were obtained (Fig. 7A). As shown, PTEN C-terminal deletions were degraded faster than PTEN wild type.
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Next, the association of HA-PTEN C-terminal deletion mutants with the second PDZ domain of the multi PDZ domain-containing protein S-SCAM/MAGI-2 (S-SCAM-PDZ 2) (14, 19) was tested by pull-down experiments, using a GST-(S-SCAM)-PDZ 2 fusion protein. PTEN wild type was efficiently precipitated with GST-(S-SCAM)-PDZ 2 (Fig. 7B, lane 8); however, the PTEN C-terminal deletion mutants lacked the capability to interact with this PDZ domain (Fig. 7B, lanes 912). The same results were obtained with S-SCAM/MAGI-2 full-length in co-immunoprecipitation experiments (data not shown). Remarkably, S-SCAM/MAGI-2 was also found to be partially proteolyzed by caspase-3 in vitro (Fig. 7C, lanes 2 and 3). Together, these results suggest a role for caspase-3 in the regulation of PTEN protein stability and in the disassembling of multimolecular complexes containing PTEN and S-SCAM/MAGI-2.
| DISCUSSION |
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, a well known activator of the caspase cascade. Our results provide
evidence that this proteolysis is because of the activity of the caspase-3
apoptotic protease. First, depletion of caspase-3, or its upstream activator
caspase-9, from the dATP-activated HEK293 cellular extracts, impaired the
cleavage of PTEN. Second, recombinant caspase-3 cleaved PTEN in vitro
to generate proteolysis products identical to those observed upon incubation
of PTEN with the dATP-activated 293 cellular extracts or upon cell stimulation
with TNF
. Third, cleavage of PTEN during TNF
stimulation was
diminished by preincubation of the cells with both the broad-spectrum caspase
inhibitor Boc-Asp(OMe)-fmk or the caspase-3-selective inhibitor z-DEVD-fmk.
Fourth, caspase-3 target sites were identified in PTEN amino acid sequence
(see below). Mutation of these sites prevented PTEN cleavage in intact cells.
Together, these results support the hypothesis that caspase-3, the major
executioner caspase during apoptosis, directly cleaves the tumor suppressor
PTEN in intact cells. Our mutational analysis demonstrates that caspase-3 cleaves PTEN at several target sites, which are located at unstructured regions of the protein (see Fig. 3B). One of these sites, Asp301, is located at an internal loop within the C2 domain of PTEN. This domain has been shown to facilitate the binding of PTEN to membranes; however, the precise function of its internal loop remains unknown. On the other hand, the residues Asp371, Asp375, and Asp384 are located at the C-terminal tail of PTEN, which regulates the stability and the function of PTEN (1113, 23, 24). Interestingly, these three sites overlap with the CK2 phosphorylation sites found at the C terminus of PTEN (12) (see Fig. 3B), suggesting that the cleavage of the phosphatase in cells could be regulated by CK2-mediated phosphorylation. Indeed, our results using PTEN phosphorylation-defective mutations indicate that phosphorylation of the residues Ser370 and/or Ser385 inhibits the cleavage of PTEN by caspase-3. Furthermore, phosphorylation by CK2 abrogated caspase-3 cleavage of PTEN in vitro, reinforcing the hypothesis that CK2 could negatively regulate PTEN cleavage by caspase-3 during apoptosis. It is possible that the phosphorylation of Ser370 and Ser385 PTEN residues could mask the neighboring caspase-3 cleavage sites and/or decrease the accessibility of the protease to its recognition sites. In this regard, it has been shown that the phosphorylation by CK2 of several cell survival-regulatory proteins inhibits their cleavage by caspases (25). On the other hand, it has been reported that defective phosphorylation of PTEN at other C-terminal residues (Ser380, Thr382, and Thr383) enhances its function and its binding to the PDZ domain-containing protein S-SCAM/MAGI-2 (11, 26, 27; see also below), suggesting that specific phosphorylation of distinct residues at the C terminus of PTEN could differentially affect PTEN regulation. In general, CK2 is a constitutively active kinase, making possible that most of the CK2 sites within PTEN would always be phosphorylated. However, our findings also suggest that the phosphorylation of PTEN could be modulated in cells, because both recombinant and endogenous wild type PTEN show a proteolysis pattern similar to that observed for the PTEN DMA mutation. Furthermore, the fact that the cleavage of PTEN in cells was only detected in the Triton X-100-insoluble fraction suggests that pools of PTEN with distinct levels of phosphorylation may exist at different subcellular locations. Thus, it is possible that a pool of non-phosphorylated PTEN is localized at Triton X-100 insoluble fractions, such as components of nucleus, lipid rafts, and/or cytoskeleton, where it could be proteolyzed by caspase-3 in response to apoptotic stimuli. Indeed, PTEN localization at some of these subcellular compartments has been reported (28, 29). The possibility cannot be excluded that a protein phosphatase, located at Triton X-100-insoluble fractions, could target PTEN in response to caspase activation.
During apoptosis, caspases cleave a restricted set of signaling proteins involved in cell growth and survival, thereby turning off survival signals in addition to activating death signals (30). We have not observed significant differences in the inhibition of protein kinase B activity by transient overexpression of the C-terminal tail PTEN deletion mutations mimicking PTEN cleavage by caspase-3, when compared with PTEN wild type (data not shown), suggesting that PTEN catalytic activity is not directly affected by the caspase-3-mediated cleavage. However, the possibility cannot be ruled out that cleavage of PTEN modulates its phosphatase activity. On the other hand, the observation that the cleavage of the catalytically inactive PTEN G129E mutation is diminished in intact cells suggests that PTEN activity could favor its cleavage by caspases. In this regard, caspase-3 activity was increased in extracts from cells transfected with PTEN wild type but not on those transfected with PTEN G129E. These findings, and the observations on the reduced stability of C-terminal PTEN deletions (see Refs. 23 and 24 and this study), suggest that caspase-3-mediated cleavage of PTEN could be part of a physiological feedback mechanism whereby PTEN protein levels could be down-regulated during the commitment of cells to undergo apoptosis.
We have found that PTEN deletion mutations mimicking caspase-3 cleavage fail to bind to the second PDZ domain of the scaffolding protein S-SCAM/MAGI-2. Furthermore, S-SCAM/MAGI-2 was also proteolyzed by caspase-3 in vitro, suggesting that the interaction of the C-terminal tail of PTEN with PDZ domain-containing proteins could be controlled by caspase cleavage. The C2 domain of PTEN is also targeted by caspase-3 (see above), and it has been reported that this domain mediates the interaction of PTEN with the major vault protein (31). Thus, it is conceivable that, during apoptotic cell death, cleavage of PTEN by caspase-3 would result in changes in the interaction of PTEN with structural, scaffolding, and/or regulatory molecules at particular subcellular locations (see above). Altogether, the results presented here describe a potential regulatory mechanism of PTEN protein stability and PTEN-protein interactions, controlled by CK2 and mediated by caspase-3, that could take place under physiological conditions.
| FOOTNOTES |
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Recipient of a fellowship from Generalitat Valenciana, Spain and a Journal
of Cell Science traveling fellowship. Present address: Keratinocyte
Laboratory, Cancer Research UK, 44 Lincoln's Inn Fields, London WC2A 3PX,
United Kingdom. ![]()

Recipient of a postdoctoral fellowship from Bancaja, Spain. ![]()
** To whom correspondence should be addressed: Instituto de Investigaciones Citológicas, Amadeo de Saboya 4, Valencia 46010, Spain. Tel.: 34-96-3391256; Fax: 34-96-3601453; E-mail: rpulido{at}ochoa.fib.es.
1 The abbreviations used are: HA, hemagglutinin; w.t., wild type; TNF
,
tumor necrosis factor
; ERK, extracellular signal-regulated kinase;
PBS, phosphate-buffered saline; PIPES, 1,4-piperazinediethanesulfonic acid;
HEK, human embryonic kidney; GST, glutathione S-transferase; PARP,
poly(ADP)ribose polymerase. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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