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J. Biol. Chem., Vol. 278, Issue 33, 30869-30874, August 15, 2003
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¶
From the
Department of Radiation Oncology, Kimmel
Cancer Center of Jefferson Medical College, Thomas Jefferson University,
Philadelphia, Pennsylvania 19107 and the
Institute of Medical Radiation Biology,
University of Essen Medical School, 45122 Essen, Germany
Received for publication, February 21, 2003 , and in revised form, May 30, 2003.
| ABSTRACT |
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| INTRODUCTION |
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In addition to ATM, ATR is another important kinase that regulates the multi checkpoints after DNA damage (25). Expression of a dominant-negative ATR sensitizes mammalian cells to many different types of DNA damage and diminishes the IR-induced G2/M checkpoint (26, 27), emphasizing the important roles of ATR in IR-induced checkpoint activation. The downstream substrate of ATR regulating the checkpoint is CHK1 (2831). CHK1 is involved in IR-induced S and G2 checkpoints in mammalian cells (21, 30, 32). Although ATM and ATR have overlapping roles, they do have distinctive roles in the signaling pathways (25). While Atm/ is viable in mammalian cells (33), Atr/ and Chk1/ both are lethal in mammalian cells (30, 34, 35), indicating that the ATR/CHK1 pathway plays an essential and ATM-independent role in mammalian cells. Caffeine, a nonspecific inhibitor of ATM and ATR (36) sensitizes AT cells to IR-induced killing (37), suggesting that the target of caffeine in AT cells might be ATR which is critical for AT cell survival.
We show here that the prolonged G2 checkpoint in irradiated human AT cells without ATM function correlates with the overactivated ATR/CHK1 pathway following IR. Like caffeine (a nonspecific inhibitor of ATR) or UCN-01 (a nonspecific inhibitor of CHK1), Chk1 siRNA also abolishes the IR-induced prolonged G2 checkpoint and radiosensitize AT cells to killing. These results clearly demonstrate that an overactivated ATR/CHK1 pathway is responsible for the IR-induced prolonged G2 checkpoint in AT cells and that this checkpoint is important for maintaining AT cell survival.
| EXPERIMENTAL PROCEDURES |
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One- and Two-parameter Flow Cytometry AssayFor propidium iodide (PI) one-parameter assay, cells were collected at different times following IR and stained with PI solution as described previously (38). For bromodeoxyuridine (BrdUrd, Sigma) and PI, a two-parameter assay, we followed the method described by McKay et al. (39) with a minor modification. Thirty µM BrdUrd was added to the growth medium immediately following IR and was maintained in the medium until cells were collected (24 h following IR). The FITC-conjugated anti-BrdUrd antibody was purchased from Dako Co. After cell collection, the cells were incubated with the antibody according to the manufacturer's instructions. The cells were assessed by a flow cytometer (Coulter Epics Elite) for PI (DNA content) and FITC (DNA synthesis) measurements.
ATR Kinase Activity AssayATR activity was examined with a
chromatin-bound extract prepared as described previously
(40). Briefly, cells were
collected and washed in cold phosphate-buffered saline. Proteins were then
extracted with cold 0.1% Triton X-100 in CSK buffer (10 mM PIPES,
pH 6.8, 100 mM NaCl, 300 mM sucrose, 1 mM
MgCl2, 1 mM EGTA, 1 mM dithiotheitol, 1
mM phenylmethylsulfonyl fluoride) for 20 min at 4 °C. The
sample was then pelleted by low speed centrifugation at 3,000 rpm for 5 min at
4 °C. The supernatant was named fraction 1. These pellets were then
re-extracted by incubating in CSK buffer and were collected by centrifugation
at 3,000 rpm for 10 min at 4 °C. This supernatant was named fraction 2.
The final pellet fraction (containing chromatin-bound proteins) was
solubilized in radioimmunopreciptation assay (RIPA) buffer (150 mM
NaCl, 40 mM MOPS, pH 7.2, 1 mM EDTA, 1% Nonidet P-40, 1%
sodium deoxycholate, 0.1% SDS) and was named fraction 3. For kinase assay, 500
µg of fraction 3 was mixed with 2 µg of ATR antibody (sc-1887, Santa
Cruz Biotechnology, Inc.) in the presence of 20 µl of a 50% (v/v) protein
G-Sepharose slurry (Invitrogen) in 500 µl of Buffer A (0.5% Nonidet P-40, 1
mM Na3VO4,5mM NaF, 0.2
mM phenylmethylsulfonyl fluoride in phosphate-buffered saline
buffer) and gently rotated overnight at 4 °C. Immune complexes were washed
twice with Buffer A, then twice with Buffer B (10 mM HEPES, pH 8.0,
10 mM MgCl2, 10 mM MnCl2, 1
mM dithiothreitol). The kinase immunoprecipitate was incubated at
30 °C for 30 min with 1 µg of PHAS-1 (Stratagene) in 25 µl of Buffer
B containing 10 µCi of [
-32P]ATP. Samples were analyzed
by 12% SDS-PAGE and the kinase activities determined by the incorporation of
32P into PHAS-1 protein using a PhosphorImager.
Purification of GST-CDC25C200256BL21 cells were transformed with plasmid pGEX-2T (Amersham Biosciences) encoding CDC25C200256. The GST-CDC25C200256 was purified by using the microspinTM GST purification module (Amersham Biosciences) according to the manufacturer's instructions.
CHK1 Kinase Activity AssayCell extracts were prepared for this purpose by using the NE-PERTM kit (Pierce) according to the manufacturer's instructions. The nuclear extracts (250 µg) were then mixed with 1 µg of CHK1 antibody (sc-7898, Santa Cruz Biotechnology, Inc.) in the presence of 10 µl of a 50% (v/v) protein A-Sepharose slurry (Repligen). The following procedures are similar to those described previously (41), except that kinase buffer without NaCl was used.
Western BlotThe nuclear extracts were used for Western blot (ATR, CHK1, CDC25A, and CDC2) assay. The whole cell lyses were used for Western blot detecting phospho-CHK1. The ATR antibody (sc-1887), CHK1 antibody (sc-8404), CDC25A antibody (sc-7389), and CDC2 antibody (sc-54) were purchased from Santa Cruz Biotechnology, Inc. Phospho-CHK1 (Ser345) antibody was purchased from Cell Signal Technology.
CDC2 Phosphorylation and Kinase Activity AssayThe CDC2 (also called CDK1) phosphorylation and CDC2 kinase assay are similar to previous reports (40). Cell extracts were prepared using the NE-PERTM kit (Pierce) for the kinase assay according to the manufacturer's instructions. The nuclear extracts (250 µg) were then mixed with 1 µg of CDC2 antibody (sc-54, Santa Cruz Biotechnology, Inc.) in the presence of 10 µl of a 50% (v/v) protein A-Sepharose slurry (Repligen) for the measurement of CDC2 activity as described before (40), except that kinase buffer without NaCl was used.
Colony-forming AssayCellular sensitivity to radiation was determined by the loss of colony-forming ability as described previously (38).
Transfection of Chk1 siRNAThe Chk1 siRNA was designed to specifically target the sequence of 127147 from the start codon region of the human Chk1 mRNA (5'-AAGCGUGCCGUAGACUGUCCA-3') (32). The siRNA was synthesized by Dharmacon Research Inc. The scramble duplex RNA (Dharmacon Research Inc.) was used as the control RNA. The RNAs were delivered to the cells by OLIGOFECTAMINETM (Invitrogen) according to the manufacturer's instructions. The cells were analyzed 36 h posttransfection.
| RESULTS |
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Abolishing the Prolonged G2 Accumulation with Kinase Inhibitors Sensitizes AT Cells to IR-induced KillingIt is known that AT cells are very sensitive to IR-induced killing. However, it remains unknown whether the prolonged G2 accumulation observed after irradiation contributes to the survival of AT cells. Checkpoint activation facilitates cell DNA repair; thus, prolonged G2 accumulation should play a protective role for AT cell survival. Previous work provides hints that this might indeed be the case (37). To test this hypothesis, we examined the radiosensitivity in irradiated AT cells under conditions in which the IR-induced G2 arrest was abolished. After the prolonged G2 accumulation was abolished by caffeine or UCN-01, AT cells became much more sensitive to IR-induced killing (Fig. 2), suggesting that this prolonged G2 accumulation in irradiated AT cells is important for cell survival.
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A Highly Activated ATR/CHK1 Pathway Exists in Irradiated AT CellsTo test whether the caffeine-sensitive response in AT cells is regulated by the ATR pathway, we measured ATR activity in the wild-type and in AT cells. There was no difference in ATR activity between irradiated and control samples from both cytoplasmic and nuclear extracts (data not shown). However, ATR activity of the chromatin-bound fraction was higher in irradiated (12 h) than in non-irradiated cells for both cell lines (Fig. 3A), suggesting that this pool of ATR contains the protein activated in response to DNA damage. When compared with the non-irradiated controls, the level of ATR activity increased in irradiated AT cells more than in irradiated wild-type cells (Fig. 3B), indicating an overactivated ATR in irradiated AT cells.
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The main downstream target of ATR for regulating the checkpoint is CHK1. CHK1 is an important G2 checkpoint regulator in mammalian cells exposed to IR (32, 38, 40). Although CHK2 is also implicated in IR-induced G2 checkpoint (42), the CHK2-regulated response depends on ATM kinase (10, 42, 43). Therefore, the prolonged G2 accumulation in irradiated AT cells (ATM/) is not likely to be regulated by this kinase. We next examined whether the CHK1 pathway was involved in the prolonged G2 accumulation in irradiated AT cells. Although the phosphorylation of CHK1 in cells following IR is hard to detect by using one-dimensional gel electrophoresis (30), we observed more phosphorylated CHK1 in irradiated AT cells than the wild-type control cells by increasing the radiation dose (20 Gy) and by using the whole cell lyses (Fig. 3A). Higher CHK1 kinase activities in both irradiated wild-type and AT cells as compared with the non-irradiated controls (Fig. 3A) were observed. The increased ratio of CHK1 activity in irradiated AT cells is much higher than that in irradiated wild-type control cells at 12 h following IR (6 Gy) (Fig. 3, A and B), indicating that CHK1 is more activated in irradiated AT cells.
The G2 checkpoint is believed to be mediated by an inhibition of the CDC25 phosphatase that activates the CDC2 kinase by removing inhibitory phosphates (Thr14 and Tyr15), thus allowing entry into mitosis (20, 32, 44). CHK1 could regulate IR-induced G2 checkpoint by phosphorylating CDC25A, which results in CDC25A degradation (32). To examine whether activation of the CHK1 kinase was associated with CDC25A protein level changes in irradiated AT cells, we examined the CDC25A levels. The results (Fig. 3A) showed that less CDC25A protein was observed in AT cells than in the wild-type control cells following IR (6 Gy). We next measured CDC2 activity. The results are consistent with those of CHK1 activation (Fig. 3) and of G2 arrest (Fig. 1). The CDC2 activities decreased in both wild-type and AT cells at 12 h after IR (6 Gy), but the changes were more apparent in AT cells (Fig. 3, A and B). These observations suggest that CDC25A and CDC2 are the downstream effectors of CHK1 in the regulation of the G2 arrest in AT cells.
Chk1 siRNA Abolishes the Prolonged G2 Accumulation and Radiosensitizes the Cells to IRTo confirm that the ATR/CHK1 pathway is responsible for the prolonged G2 accumulation in irradiated AT cells, we examined the effects of Chk1 siRNA on this checkpoint response. The Chk1 siRNA specifically inhibited CHK1 expression in the transfected cells (Fig. 4A) and reduced the prolonged G2 accumulation in irradiated AT cells (Fig. 4B). By using BrdUrd and PI, the double-labeled method, we observed the effects of Chk1 siRNA on BrdUrd incorporation. Similar with the UCN-01 results, Chk1 siRNA did not hold the irradiated cells in S phase (data not shown), which probably is also because of the role of CHK1 in abolishing the S checkpoint (21, 32). These results provide direct evidence that the ATR/CHK1 pathway plays a key role in the prolonged G2 arrest of irradiated AT cells.
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To study the relationship between G2 checkpoint response and radiosensitivity, we examined the radiosensitivity of AT cells after abolishing their G2 checkpoint response by Chk1 siRNA. Chk1 siRNA radiosensitized both wild-type and AT cells, but the sensitization in AT cells is larger than that in wild-type cells (Fig. 4C), indicating that this component of the checkpoint response is more critical in AT cells than in wild-type cells.
| DISCUSSION |
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Although ATM and ATR are two of the most important DNA damage signal transducers in mammalian cells (4, 17, 25, 4549), it was generally believed that ATM mainly responded to DNA double strand breaks (DSBs) induced by IR or chemical agents, and ATR mainly responded to other types of DNA damage induced by UV or chemical agents. Additional evidence now demonstrates that besides ATM, ATR is also a very important checkpoint regulator in IR-irradiated cells (21, 26, 40). Our results show that both ATR and its substrate, CHK1, are overactivated in AT cells following IR. Furthermore, the IR-induced, prolonged G2 accumulation in AT cells is abolished by blocking the ATR/CHK1 pathway, indicating that the overactivated ATR/CHK1 pathway is responsible for the prolonged G2 accumulation in irradiated AT cells.
Following IR, activation of the ATM pathway is observed almost immediately in mammalian cells (14, 21, 24, 42, 50). Activation of the ATR/CHK1 pathway is observed about 1 h later and reaches a maximum level at about the 3-h time point (21). This observation suggests that ATM and ATR regulate different pathways in response to the induction of DNA DSBs. ATM could be activated from a trans-acting process immediately by changes in the structure of chromatin induced by DSBs (50). Alternately, ATM could be activated from combination of a trans-acting (changes in the structure of chromatin) and a cis-acting (DNA-binding) process that either through ATM directly binding to DNA DSBs (51, 52) or by other DNA-binding protein formed complexes with ATM (53), thus playing a role in the initiating stage of multicheckpoints following IR. The fact of ATM-regulated S and G2-M checkpoints in a dose (IR)-dependent manner is supported more by the model of combined trans- and cis-acting processes. ATR is also a DNA binding protein (54, 55). In the absence of ATM, ATR may have a greater opportunity to interact directly with the damaged DNA induced by IR and cause the observed overactivation. However, we cannot exclude the possibility that activated ATM inhibits ATR activity and AT cells without ATM showing an overactivated ATR/CHK1 pathway following IR. These hypotheses require rigorous testing.
Two major DNA DSB repair pathways, non-homologous end joining (NHEJ) and homologous recombination repair (HRR), exist in mammalian cells. NHEJ is a very fast process and HRR is a relatively slow process. HRR is thought to occur mainly during S and G2 phase (56), suggesting that it benefits from a checkpoint that holds the cells in these phases of the cell cycle. The function of ATM is linked with HRR (57), suggesting that the ATM-dependent checkpoint facilitates HRR. Our previous data suggest that NHEJ is a process independent of checkpoints but that HRR is a checkpoint-utilizing process in vertebrate cells (58, 59). When the IR-induced prolonged G2 accumulation is abolished, ATM/ cells became much more sensitive to killing by IR, suggesting that the ATR/CHK1-dependent checkpoint enhances cell survival by facilitating HRR as well.
In summary, we show here that IR-induced prolonged G2 accumulation in irradiated AT cells reflects an ATM-independent checkpoint regulated by the ATR/CHK1 pathway. We also show that AT cells become more sensitive to IR-induced killing when this checkpoint is abrogated, indicating that it is important for the survival of irradiated AT cells.
| FOOTNOTES |
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¶ To whom correspondence should be addressed: Thomas Jefferson University, Thompson Bldg., B1, 1020 Sansom St., Philadelphia, PA 19107. Tel.: 215-955-2045; Fax: 215-955-2052; E-mail: ya.wang{at}mail.tju.edu.
1 The abbreviations used are: IR, ionizing radiation; AT, ataxia
telangiectasia; ATM, AT mutated; ATR, ATAXIA- and Rad3-related; PI, propidium
iodide; BrdUrd, bromodeoxyuridine; FITC, fluorescein isothiocyanate; Gy, gray;
PIPES, 1,4-piperazinediethanesulfonic acid; MOPS, 4-morpholinepropanesulfonic
acid; GST, glutathione S-transferase; siRNA, small interfering RNA;
DSB, double strand break; NHEJ, non-homologous end joining; HRR, homologous
recombination repair. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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