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J. Biol. Chem., Vol. 278, Issue 33, 30889-30895, August 15, 2003
Molecular Interaction and Enzymatic Activity of Macrophage Migration Inhibitory Factor with Immunorelevant Peptides* ![]() ![]() ¶
From the
Received for publication, March 20, 2003 , and in revised form, May 7, 2003.
Disulfide reduction is an important step in antigen processing for HLA class II restricted T cell responses. Migration inhibitory factor (MIF) is a member of the thioredoxin family and has been classically defined as a cytokine. Using enzyme-linked immunosorbent assay and CD analysis, here we describe the binding to MIF of two peptides, hepatitis B surface antigen (HBsAg) and insulin B (InsB) with high affinity for HLA class II allo-types, HLA-DP2 and HLA-DQ8, respectively. At neutral pH, cysteinylated InsB was a substrate for MIF thiol reductase activity, as assessed by mass spectroscopy/electrospray analysis. Finally, a biologically active form of MIF co-immunopurified with mature forms of HLA DP2/15, and a peptide derived from the HLA-DP 1 helix could be used for affinity purification of MIF. The
possibility that MIF participates in class II antigen presentation and/or as a
chaperone is discussed.
The macrophage migration inhibitory factor (MIF)1 is a multifunctional protein involved in several inflammatory disorders (1, 2), such as inflammatory lung diseases (3), septic shock (4), chronic colitis (5), and some autoimmune diseases, e.g. rheumatoid arthritis (6). MIF is widely expressed in different cell types but is produced mostly by activated macrophages and lymphocytes during inflammatory processes (7). The full extent of its physiological role is not completely defined, although MIF has been implicated in several biological activities. First, MIF can function as a pro-inflammatory protein, as assessed by its inhibitory effect on dexamethasone-mediated TNF- production
(2) and its ability to sustain
CD3-mediated T cell proliferation
(8) and pro-inflammatory
cytokine secretion (9). MIF
also possesses enzymatic activities as a tautomerase/isomerase
(10) and thiol oxidoreductase
(11). However, the natural
substrates for MIF catalytic activity are unknown even though its enzymatic
activity has been characterized in detail using insulin and L-DOPA
as models (11,
12).
X-ray crystallographic analysis of both human and rat recombinant MIF molecules showed a homotrimeric structure (13, 14). However, MIF is predominantly expressed as the monomer (44%) and dimer (33%), whereas only a smaller fraction (23%) is assembled to form a trimer (15, 16). Native MIF presumably possesses all three configurations of its recombinant forms. However, the relationship, if any, between configuration and biological activity is still to be defined.
Antigen-presenting cells are able to internalize extracellular proteins
within the acidic endosomal and lysosomal compartment to generate peptides for
HLA class II loading. Antigen processing consists of protein denaturation and
fragmentation. Several proteases have been described to be part of this system
(17). Proteins that contain
disulfide bonds require an additional processing step, the reduction of the
cysteine residues to produce antigenic peptides
(18). Notably, modification of
cysteine residues has been recently shown to regulate T cell responses to HLA
class II-restricted epitopes
(1921).
Within the endosomal pathway the Antigenic peptides can also be generated extracellularly by secretion of several proteases from professional antigen-presenting cells or stressed cells, such as virally infected and tumor cells (2325). Additionally exogenous antigens or already unfolded proteins can bind directly to surface HLA class II molecule for T cell presentation (26, 27). Here we describe the MIF peptide binding capacity and, more importantly, MIF thiol reductase activity at neutral pH on disulfide bonds in oxidized peptides. Because MIF is a secreted protein, particularly during inflammation, its thiol reductase activity could be associated with peptide modification in the extracellular milieu. Moreover, because MIF co-precipitated with HLA-DP2/15 molecules, a further role for MIF in HLA class II antigen presentation is suggested.
Synthetic PeptidesThe following peptides were synthesized by Research Genetics (Waltham, MA): residues 6377
(KDILEEERAVPDRMA) of HLA-DP2 molecule; residues 306 318 (PKYVKQNTLKLAT)
of influenza virus hemagglutinin (HA); residues 14 33
(VLQAGFFLLTRILTIPQSLD) of hepatitis B surface antigen (HBsAg); residues
8599 (ENPVVHFFKNIVTPR) of myelin basic protein and residues 9 23
(SHLVEALYLVCGERG) from the insulin B chain (InsB).
Cloning and Bacterial Expression of Human MIFMIF was
amplified from the cDNA of a human B cell line, NP-1, and cloned in an
isopropyl-1-thio- ELISA and CD Spectrum AnalysisELISA plates were coated overnight with 50 µM each peptide and then blocked for 1 h in 2% bovine serum albumin, phosphate-buffered saline at room temperature. Two micrograms of recombinant MIF (rMIF) were added and incubated overnight with the peptides. After washing, bound rMIF was detected in DuoSet ELISA (R&D, Minneapolis, MN). For CD spectrum analysis 25 µM rMIF was incubated overnight at room temperature with or without 2.5 µM each peptide. The incubation was performed in HSB (20 mM Hepes, 0.85% NaCl). The next day samples were diluted 10x in water, concentrated with MICRON10 (Millipore, Bedford, MA), and analyzed on a Jasco CD spectrometer. Secondary structure was analyzed on line by using the k2d program (www.emblheidelberg.de/~andrade/k2d). Thiol Reductase Activity of MIFInsulin B, residues 9 23, was oxidized as previously described. Briefly, peptide was incubated with 400 µM Cys-Hank's balanced salt solution for 3 h and then dialyzed for 48 h against 10 mM Hepes, pH 7.0. 0.5 µg of oxidized peptide was incubated for 20 min with increasing amounts of rMIF, 100, 200, and 500 ng in 10 µl of 0.4 mM Cys-10 mM Hepes buffer, pH 7.0. Samples were purified by ZipTip (Millipore) and analyzed by mass spectrometry electrospray. Mass spectrometry electrospray analysis was carried out at the Chemistry Department at Harvard University. Immunoaffinity ColumnsHLA-DRB1*0401 was purified from 10 g of B cell line pellet (PRIESS). HLA-DP2/15 was purified from 20 g of a heterozygous B cell line (NB-1) transformed and previously typed. Pellets were resuspended in lysis buffer containing 50 mM Tris-HCl, pH 7.5, 0.1 mM NaCl, complete EDTA-free protease inhibitory mixture tablets (Roche Applied Science), and either 1% Nonidet P-40 or 0.5% CHAPS. After centrifugation protein extract was filtered through a 0.2-µm filter and put through a series of columns: POROS(r)20 AL-NMS, POROS(r)20 A, POROS(r)20 AL-LB3.1, POROS(r)20 AL-IVD12, and POROS(r)20 AL-B7/21 as previously described (35). After a protocol set up in this laboratory, immunoaffinity columns were washed with solution I (0.1% Nonidet P-40, 50 mM Tris-HCl, pH 8.0), solution II (0.5% CHAPS, 500 mM NaCl, 50 mM Tris, pH 8.8), and solution III (0.1% CHAPS, 2 mM Tris-HCl, pH 8.0). Elution was in 0.1% CHAPS, 50 mM glycine buffer, pH 11.5. Buffer exchange and protein concentration were performed on Centricon 10. Small scale protein purification was obtained using cell lysate from 5 g of B cell line. Native MIF was isolated using the monoclonal antibody anti-human MIF (R&D) conjugated to N-hydroxysuccinimide-activated resin (Amersham Biosciences). Second-step purification was performed using either B7/21 alone or a mix of HLA class II monoclonal antibodies, B7/21 and IVD12, conjugated to N-hydroxysuccinimide-activated column. PRIESS and NB-1 were both analyzed. Proteins were run on 12.5% SDS gels and analyzed by Coomassie Blue staining or Western blot. HLA class II isotypes were stained with a general anti-HLA class II rabbit serum, generously provided by Dr. N. Tanigaki. Human MIF was stained using polyclonal biotinylated antibody specific for human MIF (R&D).
Analysis of the Inhibitory Effect of MIF on Dexamethasone
Activity MIF function was tested as previously described. Briefly,
human monocytes were isolated from whole blood by Ficoll density gradient
centrifugation and plated at 5 x 106 cells/ml in 24-well
plates in RPMI, 10% human AB serum. The monocytes were purified by adherence
and incubated for 1 h with dexamethasone (109
M) plus 110 ng/ml of rMIF (R&D) or 1 ng of human MIF
co-purified with HLA-DP2/15 from B7/21 column. LPS (Sigma) was added at the
concentration of 0.5 µg/ml. Sixteen hours of conditioned medium was
collected, and TNF- Pulse-Chase and ImmunoprecipitationLB and Bg5 B cells lines were pulsed for 30 min with 1 µCi/ml [35S]methionine (PerkinElmer Life Sciences) and then chased for 1 and 4 h in complete Dulbecco's modified Eagle's medium supplemented with a 10-fold excess of cold methionine and cysteine. Cells were lysed in 1% Nonidet P-40 150 mM NaCl in 50 mM Tris containing a mixture of protease inhibitors (Roche Applied Science) and equivalent amounts of radioactive post-nuclear supernatant used for immunoprecipitation after preclearing with protein A- and G-Sepharose beads (Sigma). The immunoprecipitation was performed using a mouse anti-human MIF mAb (clone 12302.2) (R&D system). Samples were resolved by SDS-PAGE boiled and non-boiled under non-reducing conditions. Peptide Affinity ColumnA HiTrap N-hydroxysuccinimide-activated 1-ml column (Amersham Biosciences) was conjugated with 5 mg of solubilized peptide following the protocol provided by the company. Five grams of a transformed human B cell line were lysed in 25 mM Tris-HCl, 0.5 mM NaCl, 0.5% CHAPS, and complete, EDTA-free, protease inhibitor mixture tablets (Roche Applied Science). The affinity column was loaded overnight at 4 °C with cell lysate and then extensively washed in lysis buffer. Elution was completed with 100 mM glycine buffer, pH 3. Fractions corresponding to the elution peak were concentrated on Micron 10 (Millipore) and analyzed by Coomassie staining of 12.5% SDS-PAGE. The whole elution was trypsin-digested and sequenced by matrix-assisted laser desorption ionization mass spectroscopy analysis. Tandem mass spectroscopy analysis was carried out at the Microchemistry Facility at Harvard University.
MIF Peptide Binding AnalysisMacrophage migration inhibitory factor functions as a tautomerase/isomerase and thiol reductase on small molecule substrates such as L-DOPA and insulin (11, 12). Pro-1 and Cys-57Cys-60 form the enzymatic catalytic sites. Thioreductase activity has an optimal pH ranging between 7.3 and 9 (11). MIF is a soluble protein mostly secreted extracellularly. Because a number of different molecules with enzymatic properties have been found involved in extracellular protein fragmentation and processing (2325) the possible interaction between MIF and immunologically relevant peptides was examined. Human rMIF was expressed and purified from E. coli BL21-(DE3) Lys+ cells as previously described (28). Correct protein folding assessed by CD spectrum analysis (see Fig. 2) was identical to that previously published (29). Several well known high affinity HLA class II peptides were selected and analyzed for their ability to interact with rMIF in an ELISA assay (Fig. 1) (30). The highest amount of rMIF was detected in plates coated with HBsAg1433, a peptide derived from hepatitis B surface antigen, which showed a high binding affinity for HLA-DP2 (31). A fragment of insulin B (InsB923) known to bind HLA-DQ8 (32) also showed a significant binding capacity to rMIF, whereas little or no binding was observed for both myelin basic protein residues 8599 and HA306318, peptides, known for their high affinity binding to HLA-DR2 and HLA-DR1, respectively (33). Although ELISA is a well established method to determine HLA peptide binding, a better approach to examine protein-protein interaction is analyzing conformational changes by CD spectrum analysis. In agreement with what has been previously reported, the rMIF CD spectrum showed a positive ellipticity at 197 nm and broad negative ellipticity between 205 and 225 nm (Fig. 2) (29). Under the conditions used, the secondary structure obtained with the K2d program was 37%
helix, 15% sheet, and 48% random coil. Moreover, changes in the MIF CD
spectrum were observed after an overnight incubation with
HBsAg1433 peptide (Fig.
2a). Secondary structure analysis by K2d revealed a
consistent increase of sheets and decrease of random coils, 41 and 31%,
respectively. No modifications, either in CD spectrum or in secondary
structure, were observed after an overnight incubation with
HA306318 or myelin basic protein residues 8599
peptides (Fig. 2b). At
the concentration used all of the peptides had only a very weak signal that
coincided with the noise level (Fig.
2c). These observations suggest that rMIF has a flexible
conformation, and major modifications of the secondary structure may occur
upon complex formation with specific peptides.
MIF Thiol Reductase ActivityMIF enzymatic activity includes a thiol reductase function (11). Site-directed mutation analysis pointed to Cys-57 and Cys-60 as part of the MIF enzymatic catalytic site, determined in vitro using molecular models (11). Further analysis was conducted here to investigate whether the MIF thiol reductase activity could function on oxidized peptides. Among the synthetic peptides tested for their binding to rMIF (Fig. 1), InsB923, molecular mass 1645.8, possesses a cysteine residue in position 11. Cysteinylation of this residue in Cys-Hank's balanced salt solution changed the molecular mass to 1765, as shown by mass spectrometry electrospray analysis (Fig. 3, ab). Peaks at 823 and at 883 are double-charged and correspond to m/z of reduced and oxidized peptide, respectively. After 20 min of incubation with rMIF at pH 7.2 a significant amount of InsB923 was reduced (Fig. 3c). The ratio peptide reduced/oxidized was dose-dependent as shown in Fig. 3d. Thus, rMIF can function directly to reduce cysteinylated forms of InsB 923. As expected, no modifications in the molecular mass of the cysteinylated peptide occurred without adding rMIF (Fig. 3b). Thus, peptides can be substrates of MIF thiol reductase, and as expected, this reaction occurs at neutral pH
MIF and HLA Class II AssociationA possible association between MIF and HLA class II molecules was also assessed. Recently a modified methodology based on high pressure immunoaffinity columns that is suitable for rapid large scale purification of HLA proteins was described (34, 35). This technique was applied to purify HLA-DR (HLA-DRB1*0401) using mAb LB3.1 and HLA DP (HLA-DPB1*0201/*1501) using mAb B7/21 affinity columns. The isolated HLA molecules were analyzed on Western blot using a general HLA class II rabbit antiserum as the detection antibody (Fig. 4a, left). Interestingly, MIF was found associated with HLA-DP2/15 mainly as the dimer, as detected by Western blot analysis, but not with the HLA-DR4 preparation (Fig. 4a, right).
MIF has been characterized by its ability to override the inhibitory effect
of dexamethasone on TNF-
Pulse-chase experiments were performed to investigate whether MIF could be
found associated with HLA DP2/15 at any step of class II trafficking from the
endoplasmic reticulum to the cell surface. HLA class II heterodimers were
chased up to 18 h; however, MIF could not be identified after precipitation of
HLA-DP (data not shown). This result was not surprising since, besides the
invariant chain, which associates with all nascent class II
Monomeric MIF possess three cysteines, Cys-56, Cys-59, and Cys-80. Because substitution of Cys-59 led to a significant reduction of the dimeric and trimeric forms, it is likely that the same position is involved in intermolecular disulfide bonds, as suggested by experiments shown in Figs. 4a, 5a, and 6c. Whether such an S-S bridge is an in vitro artifact or exists under physiological condition require further investigation.
MIF Can Be Isolated by Column Affinity Using the Synthetic 15-mer
DP
MIF crystal structure analysis showed a homotrimeric structure shaped as a single ring of 15-Å diameter at the open ends, supposedly the binding site for small molecules (13). However, crystallographic analysis and NMR are in discordance with the observation that MIF in physiological conditions exists primarily as a monomer and dimer. Evidence also suggests that dimer or monomer mediate MIF function (7), although the relation between structure and functionality is still ill defined. MIF tautomerase/isomerase activity relies on Pro-1 that promotes enolization and ketonization (10, 43). Because its natural ligand is unknown, MIF enzymatic properties have been described in detail using molecular models as substrates (44). Among those that have been tested are the physiological molecules L-DOPA and insulin (45). Because insulin would not fit within the channel formed by its trimeric assembly, MIF interaction with substrates such as insulin would probably require a dimeric or monomeric structure. The present report that HLA class II peptides can also be MIF substrates is a novel characteristic.
An additional enzymatic activity reported for MIF is its thiol reductase
function (11). The molecular
redox center has the conserved sequence motif of the thioredoxin family
consisting of CXXC (Cys-57AlaLeuCys-60)
(11). MIF thioreductase
activity has been well characterized on small proteins. Here, in addition to
defining MIF peptide binding capacity, its thiol reductase activity is also
demonstrated to function on a peptide substrate as well, cysteinylated
(InsB923). Another enzyme of the thioredoxin family was
recently reported,
Recently, much interest has surrounded the understanding of the role of
soluble "peptide chaperones" during antigen presentation
processes. A number of heat shock protein family members (Hsp70, Hsp90, gp96,
Hsp110, gpr170) have been shown to interact with a broad range of peptides
(53,
54). Historically, Hsp
function has been described for class I HLA loading where peptides are
transported from the cytosol to the endoplasmic reticulum in complex with Hsps
(55). However, some data
suggest an intracellular Hsp involvement in HLA class II presentation as well
(55). For example, Hsp70
interacts with specific peptide fragments derived from the third hypervariable
region of HLA-DRB1*0401 and co-precipitates with HLA-DR4 molecules
(56). Similarly, in this
report MIF association with mature forms of HLA-DP2/15 molecules is described.
All together, these observations, MIF peptide binding capacity and its
interaction with HLA-DP molecules, support its possible involvement in HLA
class II peptide generation and exchange and, in this sense, its additional
function as HLA class II chaperone. HLA-DP is the least expressed and least
characterized among HLA class II isotypes
(34). Its role in antigen
presentation has been established for viral and bacterial antigens and in
alloreactivity (57). One of
the strongest HLA class II genetic associations with immunological disorders
is the presence of a glutamic acid at position HLA-DP
Because MIF was purified using a peptide affinity column loaded with a
fragment of HLA-DP In conclusion, new aspects of MIF biology have been described in this paper; peptide binding capacity, its function as thiol reductase on peptide substrates, and importantly, its association with HLA-DP molecules. These observations point to new functional aspects of this small protein and raise interesting questions about the role of MIF during inflammatory chronic diseases and autoimmunity.
* This work was supported by National Institutes of Health Grants AI-49524 and CA-47554 (to J. L. S.) and AI-48832 (to L. S.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. ¶ To whom correspondence may be addressed. Tel.: 617-495-2733; Fax: 617-496-8351; E-mail: ipotolic{at}mcb.harvard.edu or jlstrom{at}fas.harvard.edu.
1 The abbreviations used are: MIF, migration inhibitory factor; rMIF,
recombinant MIF; HA, hemagglutinin; HBsAg, hepatitis B surface antigen; InsB,
insulin B; CHAPS, 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonic
acid; LPS, lipopolysaccharide; TNF, tumor necrosis factor; Ab, antibody; Hsp,
heat shock protein; ELISA, enzyme-linked immunosorbent assay; PBL, peripheral
blood leukocytes.
2 P. Cresswell, personal communication.
We thank Lih Wen Deng for providing purified HLA-DR4 molecules, Nobuyuki Tanigaki for a general HLA class II rabbit anti-serum, and Jonathan Boyson for helpful discussion. A special thanks to Lawrence J. Stern and Peter Cresswell for critical reading of the manuscript.
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