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J. Biol. Chem., Vol. 278, Issue 35, 33422-33435, August 29, 2003
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From the
Veterans Affairs Medical Center, Department of Internal Medicine and
Karmanos Cancer Institute, Wayne State University, Detroit, Michigan 48201,
The
Burnham Institute, La Jolla, California
92037, and ¶Galderma Research and Development,
Sophia Antipolis, France
Received for publication, March 27, 2003 , and in revised form, May 27, 2003.
| ABSTRACT |
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130-kDa HBC cell perinuclear protein (termed CARP-1).
Treatments with CD437 or chemotherapeutic agent adriamycin, as well as serum
deprivation of HBC cells, stimulate CARP-1 expression. Reduced levels of
CARP-1 result in inhibition of apoptosis by CD437 or adriamycin, whereas
increased expression of CARP-1 causes elevated levels of cyclin-dependent
kinase inhibitor p21WAF1/CIP1 and apoptosis. CARP-1 interacts with
14-3-3 protein as well as causes reduced expression of cell cycle regulatory
genes including c-Myc and cyclin B1. Loss of c-Myc sensitizes cells to
apoptosis by CARP-1, whereas expression of c-Myc or 14-3-3 inhibits
CARP-1-dependent apoptosis. Thus, apoptosis induction by CARP-1 involves
sequestration of 14-3-3 and CARP-1-mediated altered expression of multiple
cell cycle regulatory genes. Identification of CARP-1 as a key mediator of
signaling by CD437 or adriamycin allows for delineation of pathways that, in
turn, may prove beneficial for design and targeting of novel antitumor
agents. | INTRODUCTION |
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We recently described the abilities of a novel retinoid [3-(1-adamantyl)-4-hydroxyphenyl]-2-naphthalene carboxylic acid (CD437) to induce growth arrest and apoptosis in a wide variety of malignant cell types, including breast, prostate cancer, and leukemia by an RAR/RXR-independent mechanism (68). In addition, [3-(1-adamantyl)-4-hydroxyphenyl]-2-naphthalene carboxylic acid has been reported to inhibit the growth of human cancer xenografts in nude mice (9). The mechanism(s) by which CD437 triggers cell cycle arrest and apoptosis is as yet not completely defined. On the basis of our research, CD437 was found to enhance expression of the cyclin-dependent kinase inhibitor (CDKI) p21WAF1/CIP1 and DNA damage-inducible GADD45 genes (10, 11) through a unique mechanism in human breast carcinoma (HBC) cells. We also found that CD437 potently induced c-Jun N-terminal kinase/stress-activated protein kinase and that induction occurred upstream of caspase activation and apoptosis (12). Inactivation of c-Jun, a downstream effector of activated c-Jun N-terminal kinase/stress-activated protein kinase, was also found to impair CD437-dependent apoptosis but not the induction of the expression of the CDKI p21WAF1/CIP1 in A549 lung cancer cells (13).
The roles of apoptosis mediators have been ascertained by expressing dominant negative peptides directed to specific cellular proteins involved in apoptotic signaling cascades. This powerful approach allows us to inactivate a known mediator, but not novel mediators that may either be key signaling molecules or co-operate with known mediators. Given that CD437 utilizes unique pathways for growth arrest and apoptosis, we hypothesized that novel mediators of CD437-dependent growth arrest and apoptosis existed. We then utilized a functional knockout genetic approach by overexpressing antisense cDNAs (14) to obtain novel molecules involved in CD437-dependent apoptotic signal cascades. The antisense knockout approach involves random inactivation of genes via a cDNA library cloned in an antisense orientation in an expression vector plasmid (14, 15). This approach is based on the premise that specific inactivation or knockout of a growth-inhibitory and/or apoptosis-promoting gene would result in a growth advantage to the transfected cells in a specific restrictive environment. This growth advantage constitutes a powerful forward selection that is helpful in isolating the desired inactivation event from random inactivation. Although nascent protein synthesis may be unnecessary for CD437-dependent apoptosis in certain cell types (such as leukemia), stable overexpression of a particular antisense RNA should over time deplete the target protein, thereby causing a partial or complete block in the CD437-dependent apoptotic signal. This methodology allows, in principle, the identification of important genes, the products of which may be modulated at the transcriptional, post-transcriptional, translational, or post-translational level during the CD437-dependent cell cycle arrest or apoptosis. Thus, if a set of novel mediators of growth arrest and/or apoptosis is activated in the presence of CD437, their specific inactivation via overexpression of a transfected antisense cDNA library should lead to cellular resistance to CD437 apoptosis.
The functional knockout genetic approach yielded several CD437-resistant
MDA-MB-468 HBC sublines. Plasmids expressing antisense cDNAs were rescued, and
one of the plasmids (AS-6) harbored a cDNA insert that belongs to a novel
130-kDa protein (referred to as cell cycle and
apoptosis regulatory protein (CARP)-1).
CARP-1 expression in HBC cells is regulated by serum as well as by agents such
as CD437 and adriamycin. This report details the role(s) of CARP-1 in
regulating cell cycle and apoptosis pathways.
| EXPERIMENTAL PROCEDURES |
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Cell Lines and Cell CultureEstrogen receptor-negative, p53-negative MDA-MB-468 HBC cells were cultured and maintained essentially as described (16). The stable sublines were generated by transfecting the MDA-MB-468 HBC cells with the vector plasmids pcDNA3, pcDNA3/Hygro, or pMBJF-1, or plasmids expressing CARP-1 antisense (clone 1.6; see below) or c-Myc antisense, followed by selection in the presence of 800 µg/ml neomycin or 400 µg/ml hygromycin using described methodology (11). The expression plasmid pcDNA3-Myc clone 1 for c-Myc protein has been described before (16). Additional plasmid expressing c-Myc antisense was derived from plasmid pcDNA3-Myc clone 1 by positioning entire c-Myc protein encoding open reading frame (ORF) cDNA in antisense orientation downstream of the CMV promoter. Individual sublines harboring either the vector plasmid (vector sublines), plasmid expressing c-Myc antisense (c-Myc antisense sublines), or plasmid expressing CARP-1 antisense (clone 1.6 sublines) were derived and propagated in the continuous presence of the appropriate antibiotic. In addition, HBC cells were transfected with vector plasmid pcDNA3/myc-HisA or plasmid 6.1 expressing CARP-1 protein fused with Myc and polyhistidine tags at the C terminus (see below). Multiple neomycin-resistant stable sublines were generated and propagated as described (11).
Cloning of CARP-1 cDNAsMDA-MB-468 HBC cells were either untreated or treated separately with 1 µM CD437 for 1, 3, 6, 12, 24, and 48 h. Total RNAs were extracted and pooled. Poly(A)+ RNAs were prepared following standard methods and then utilized to synthesize double-stranded cDNAs, followed by generation of antisense cDNA library as described (14, 15, 1719). The cDNAs were cloned in antisense orientation in episomal plasmid pMBJF-1 that is a derivative of pTK01 (14), where SV40 promoter has been replaced by CMV promoter elements. RT-PCR analysis of Escherichia coli DH10B transformed with the above library showed greater than 80% colonies having recombinant plasmids with a range of cDNA insert sizes (0.12.5 kb), suggesting excellent recombination efficiency and complexity of the library. The library was then transfected into MDA-MB-468 HBC cells and stable sublines selected in the presence of hygromycin (400 µg/ml) and CD437 (1 µM), followed by plasmid DNA extraction from each subline and subsequent sequencing of the inserts as described (11, 20).
The CARP-1 cDNA (GenBankTM accession number AY249140
[GenBank]
) having the
entire CARP-1 protein encoding ORF was cloned by RT-PCR methodology utilizing
total RNA derived from MDA-MB-468 HBC cells. The sequence of the primers for
PCR amplification (see Table I)
were derived from the GenBankTM data base having mouse and human cDNAs
with homologies to the cDNA insert of plasmid AS-6 (see below). Multiple
subfragments of the CARP-1 cDNA were independently PCR-amplified by using
combinations of oligos AS-6.1 plus AS-6.9 (fragment 1), AS-6.8 plus AS-6.11
(fragment 2), AS-6.10 plus AS-6.13 (fragment 3), AS-6.12 plus AS-6.15
(fragment 4), or AS-6.14 plus AS-6.17 (fragment 5). The PCR-amplified cDNA
fragments were digested with either BamHI plus DraI
(fragment 1), DraI plus NheI (fragment 2), NheI
plus SacI (fragment 3), SacI plus EcoRV (fragment
4), or EcoRV plus XhoI (fragment 5) followed by their
sequential ligation into BamHI plus XhoI cut vector plasmid
pcDNA3/myc-HisA (Invitrogen) to obtain a recombinant plasmid clone 6.1
(Fig. 1). This recombinant
plasmid has CARP-1 cDNA with the entire protein encoding ORF, the translation
start codon ATG but lacks translation termination codon TGA, whereas Myc and
polyhistidine epitope tags are fused in-frame at the C terminus of the CARP-1
protein. In addition,
1.4-kb CARP-1 cDNA fragment was PCR-amplified using
oligos AS-6.1 and AS 6.11, followed by restriction digestion of the cDNA with
BamHI plus NheI. This cDNA subfragment was then cloned in
antisense orientation in BamHI- and NheI-digested plasmid
vector pcDNA3/Hygro (Invitrogen) to obtain plasmid clone 1.6
(Fig. 1).
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Approximately 0.8-kb cDNA fragment containing the entire protein encoding
ORF of 14-3-3
protein (21; GenBankTM accession number AF029082
[GenBank]
)
was RT-PCR-amplified using total RNA derived from MDAMB-468 HBC cells and a
combination of oligos 14-3-3-1 (sense oligo
5'-CGCGGATCCCCAGAGCCATGGAGAGAG-3' positions 6180) and
14-3-3-2 (antisense oligo 5'-CGCTCTAGAGCTCTGGGGCTCCTGGGGAG-3'
positions 796851). The PCR-amplified product was digested with
BamHI plus XbaI and ligated into
BamHI-XbaI-digested vector plasmid pEF-1/V5-HisA
(Invitrogen) to obtain plasmid pEF-1/14-3-3-V5-His clone 1 (encoding 14-3-3
protein fused with V5 and His tags at the C terminus). The inserts of plasmids
of clones 1.6 and 6.1 having CARP-1 cDNAs, as well as pcDNA3-c-Myc antisense
plasmid and pEF-1/14-3-3-V5-His clone 1, were sequenced to confirm validity of
the inserts.
MTT and Apoptosis AssaysSublines transfected with vector plasmid pCDNA3/Hygro or clone 1.6 were either untreated or separately treated with 1 µM CD437 for 72 h, followed by determination of their viability by MTT assay (18). The parental MDA-MB-468 as well as vector- or clone 1.6-transfected HBC sublines were also treated either with adriamycin (34 µM), taxol (30 µM), cisplatin (10 µg/ml), or etoposide (10 µg/ml) over a range of time points, and their viabilities were determined by MTT assays as described (18, 22). The assessment of the live cells was derived by measuring the absorbance of the converted dye at a wavelength of 570 nm.
In addition, the parental MDA-MB-468 as well as vector plasmidtransfected subline or two independent sublines derived from stable transfection of clone 1.6 were separately treated with either 1 µM CD437 or 34 µM adriamycin for 72 h. The parental MDA-MB-468 HBC cells were also independently transduced with retroviruses expressing either CARP-1-myc-His fusion protein or alkaline phosphatase (see below). Cell lysates were prepared from untreated as well as treated cells to determine apoptosis by utilizing cell death detection ELISA kit (Roche Diagnostics). The net absorbances at the suggested wavelengths (A405 nm minus A490 nm) were obtained for the lysates derived from treated as well as untreated cells. The histograms indicating levels of apoptosis were generated either by plotting net absorbances or by calculating the "enrichment factor" as suggested by the manufacturer's protocols. The enrichment factor indicating release of mono- and oligonucleosomes following apoptosis was calculated by dividing the net absorbance values from the treated samples by those obtained from untreated controls.
Immunoprecipitation and Western Blot AnalysisLogarithmically growing parental HBC cells as well as various sublines were either untreated or treated with different agents for the indicated time points. For immunoprecipitation, aliquots of cell lysates containing 1.0 mg of proteins were incubated with indicated antibodies and Sepharose G at 4 °C for 3 h. Immunoprecipitates or the protein extracts were electrophoresed on 912% SDS-polyacrylamide gels essentially as described before (10, 18, 22). The filters containing protein extracts were independently probed with indicated antibodies per the manufacturer's guidelines and the protocols described before (10).
Flow Cytometric AnalysisFlow cytometric analysis of DNA content was performed to assess the cell cycle phase distribution as described previously (23). Normally growing parental wild type, the vector plasmid-transfected, c-Myc antisense-transfected sublines, or clone 1.6-transfected HBC sublines were independently stained for DNA content using propidium iodide. After staining, cells were analyzed on a BD Biosciences FACScan cytometer (San Jose, CA). The data were analyzed using the multicycle program from Phoenix Flow Systems (San Diego, CA).
Gene Regulation by CARP-1To study the downstream targets of
CARP-1, Atlas Human 1.2 array membranes (Clontech) with
1200 genes were
utilized in conjunction with radiolabeled total RNAs from vector pcDNA3/Hygro
subline 1 or clone 1.6 subline 9. Total RNAs (3.0 µg) from each subline
were separately labeled with [32P]dATP and hybridized with the
array membranes essentially following the manufacturer's guidelines. The
membranes were washed and autoradiographed for 2 weeks, and the hybridization
signals were quantitated utilizing the manufacturer's suggested program.
Retroviral Expression of CARP-1Retroviral gene transfer and expression system (Clontech, Palo Alto, CA) was used to generate retroviruses expressing CARP-1. First, the entire CARP-1-myc-His-tagged cDNA insert of plasmid clone 6.1 was excised with BamHI and PmeI and ligated into BglII and StuI cut retroviral vector plasmid pLNCX2 to obtain plasmid clone 16.1. Next, the plasmid clone 16.1 or pLAPSN (retroviral vector expressing alkaline phosphatase) were independently transfected into the RetroPack PT67 packaging cells (Clontech), followed by selection of PT67 sublines in the presence of neomycin (500 µg/ml). Multiple, independent sublines or pooled populations expressing either myc-His-tagged CARP-1 or alkaline phosphatase were obtained. The expression of myc-His-tagged CARP-1 protein in each subline was determined by Western immunoblot using anti-His (C-terminal) monoclonal antibody (Invitrogen). Two independent PT-67 sublines expressing the highest levels of myc-His-tagged CARP-1 (lines 16.4 and 16.6) and one subline expressing alkaline phosphatase were selected for determination of viral titers essentially per the suggested protocols.
Immunolocalization of CARP-1CARP-1 antibodies
1 and
2 were generated (Sigma Genosys, The Woodlands, TX) by immunizing
rabbits with keyhole limpet hemocyanin-conjugated peptides containing epitopes
RERERERRR (amino acids 320328) and EDDKEEEERKRQEEI (amino acids
698712), respectively, of the putative sequences deduced from the
CARP-1 cDNA. Localization of CARP-1 in parental HBC cells or HBC subline
expressing CARP-1-myc-His fusion protein was studied by immunocytochemical
analyses (22) by utilizing
1 anti-CARP-1 (1:2000 dilution) polyclonal antibody or anti-His-tag
(27E8) monoclonal antibody (Cell Signaling, Beverly, MA), respectively. In
addition,
1 anti-CARP-1 polyclonal antibody (1:1000 dilution) in
conjunction with mouse monoclonal antibody for proliferating cell nuclear
antigen (PCNA; Santa Cruz Biotechnology, Santa Cruz, CA) were utilized to
study expression of CARP-1 and PCNA proteins in a human breast cancer biopsy
specimen. Dual labeling of CARP-1 and PCNA was carried out as above followed
by confocal microscopic analysis to determine expression of CARP-1 and PCNA
proteins. The antibody-stained sections were then photographed under different
magnifications utilizing Zeiss microscope with attached 35-mm camera for
recording the photomicrographs.
| RESULTS |
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20 copies per cell are
included in the library (14).
RNAs were prepared from MDA-MB-468 HBC cells treated with CD437 over a range
of time points to allow cloning of molecules involved in early, middle, and
late signaling events triggered by CD437. CD437 at a concentration of 1
µM was found previously
(6,
10) to be optimal in eliciting
cell cycle arrest as well as apoptosis. After cDNA library was transfected
into HBC cells, stable sublines were selected in the combined presence of
hygromycin and CD437 as described
(11). Of the several HBC
colonies isolated and propagated to obtain plasmid DNAs, one harbored the
recombinant plasmid AS-6 having an
0.15-kb insert (positions
17601900; Fig. 1). A
composite restriction map was created from the human and mouse partial cDNAs
in the GenBankTM that were homologous to the insert of the AS-6 plasmid,
followed by cloning of the full-length cDNA that encodes a novel 130-kDa
protein CARP-1 (Fig. 1). A protein data base search yielded very high homology scores for two putative motifs in the CARP-1 peptide. A sequence of 31 amino acids (from positions 637 to 667) showed 88% alignment with a putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organization. A 41-amino acid sequence (positions 151191) showed 76% alignment with a putative cold-shock protein domain that function as an RNA-binding domain. The partial mouse cDNA-encoded peptides also contain DNA-binding (bihelical) and cold-shock protein domains that are identical to those present in the human CARP-1 protein. The plasmid expressing myc-His-tagged wild-type CARP-1 having putative cold-shock and DNA-binding motifs was then generated as detailed under "Experimental Procedures" (clone 6.1, Fig. 1).
Furthermore, the CARP-1 5'-untranslated region subfragment having part of the protein encoding ORF was RT-PCR-amplified using oligos AS-6.23 and AS-6.25 (Table I) and total RNA from MDA-MB-468 HBC cells. The PCR product was subcloned into pBSK vector plasmid, and multiple independent recombinant plasmids were sequenced to confirm the presence of a translation termination codon located 67 nucleotides upstream and in-frame of the CARP-1 ATG (not shown). Thus, CARP-1 peptide encoded by the plasmid clone 6.1 (see Fig. 1) possesses the complete N terminus of the CARP-1 protein.
HBC Cells Expressing Reduced CARP-1 Show Increased Cell Viability and Reduced Apoptosis When Treated with CD437 or AdriamycinWhether CARP-1 plays a role in apoptosis signaling in the presence of CD437 or other chemotherapeutic drugs was investigated next. The parental MDA-MB-468 HBC cells were treated with different drugs over a range of times, and their viabilities were assessed by MTT assays. Cell viabilities of 20% or less were observed following 72 h of treatment with either adriamycin, etoposide, or cisplatin, while <20% cell viability was observed after 24 h of treatment with taxol (not shown). The reduction in viability of HBC cells treated with adriamycin, etoposide, or cisplatin was due to apoptosis as evidenced by fragmented nuclei following acridine orange staining (not shown).
We found that 1 µM CD437 induced apoptosis in HBC cells within 4872 h. Whether CARP-1 played a role in CD437-dependent apoptosis was investigated in four independent sublines transfected with vector plasmid pCDNA3/Hygro or 15 independent sublines transfected with clone 1.6. Each subline was separately treated with 1 µM CD437 for 72 h. CD437 treatment of vector-transfected sublines resulted in >80% loss of cell viability, whereas several clone 1.6 transfectants only showed a 2030% loss (Fig. 2A). The variability in viability of CD437-treated clone 1.6 transfectants could be due to the varying copy number or nuclear integration site(s) of the plasmid 1.6 that, in turn, influenced the levels of antisense RNA and subsequently CARP-1 protein. The resistance to apoptosis by CD437 observed in multiple, independent sublines transfected with clone 1.6 suggested a role for antisense-mediated reduced levels of CARP-1 in this process.
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The CD437-resistant HBC sublines transfected with clone 1.6 (see Fig. 2A) were then utilized to investigate whether expression of CARP-1 antisense contributed to chemotherapeutic drug resistance. Independent sublines transfected with either vector (sublines 13) or clone 1.6 (sublines 811 and 13; see Fig. 2A) were treated with taxol for 24 h or adriamycin, etoposide, or cisplatin for 72 h. Treatment with cisplatin or taxol resulted in reduced viability of the treated sublines transfected either with the vector or clone 1.6 (not shown). However, all clone 1.6-transfected sublines had significantly increased viability when compared with vector alone transfectants after treatment with etoposide or adriamycin (Fig. 2B).
Whether differences in the loss of viabilities of vector or clone 1.6-transfected sublines treated with either CD437 or adriamycin was a result of apoptosis was ascertained by utilizing cell death detection ELISA kit (Roche Applied Science) as described under "Experimental Procedures." Treatment with CD437 or adriamycin resulted in the levels of apoptosis in the wild-type or vector subline 1 cells that were approximately three times that observed for the clone 1.6-transfected subline 9 or 10 (Fig. 3). Thus, the data suggest that increased viabilities of CD437- or adriamycin-treated clone 1.6 sublines 9 or 10 (Fig. 2) reflect alterations in the cell numbers due to reduced apoptosis.
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Expression of CARP-1 Antisense Results in Reduced Levels of CARP-1
ProteinWestern immunoblot analysis of clone 1.6 expressing HBC
sublines 811 and 13 (see Fig.
2A) using
1 anti-CARP-1 polyclonal antibodies
showed
50% reduced levels of CARP-1 when compared with the vector
plasmid-transfected HBC subline (Fig. 4,
A and B). Moreover, clone 1.6 sublines 1 and 4
that displayed reduced viabilities following treatment with CD437 (see
Fig. 2A) did not have
reduced CARP-1 when compared with clone 1.6 sublines 9 and 10
(Fig. 4, C and
D). Taken together, the data in Figs.
2,
3,
4 suggest that reduced
expression of CARP-1 contributes to increased cell viability as well as lower
apoptosis of HBC cells further implicating CARP-1 in apoptosis signaling
pathways utilized by CD437, adriamycin, or etoposide but not by taxol or
cisplatin. The chemotherapeutic agents adriamycin, etoposide, or cisplatin are
known to cause DNA damage leading to apoptosis in HBC cells. Because CARP-1
contains a predicted motif for DNA (bihelical) binding, it remains to be
determined whether CARP-1 binding to DNA induced by CD437, adriamycin, or
etoposide leads to DNA damage followed by apoptosis.
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CD437, Adriamycin, or Serum Regulate CARP-1 Expression in HBC
CellsNext we studied whether growth arrest and/or apoptosis
signaling pathways target CARP-1 expression. HBC cells were treated with
either 1 µM CD437 or 34 µM adriamycin for various
times followed by Western immunoblotting for CARP-1 expression utilizing
1 anti-CARP-1 polyclonal antibody. Treatment with CD437
(Fig. 5A) or
adriamycin (Fig. 5B)
resulted in a time-dependent increase in CARP-1 expression. Although both the
agents caused increased expression of CARP-1, the existence of specific and
significant differences in the signaling events induced by CD437 or adriamycin
is supported by the fact that CD437 resulted in increased expression of CARP-1
as early as 6 h, while adriamycin treatment resulted in elevated CARP-1 levels
at 12 h or later time points (Fig.
5). To further elucidate mechanism(s) of CARP-1 regulation, CARP-1
expression was investigated in parental MDA-MB-468 HBC cells that were either
cultured in the media lacking FBS or in FBS-supplemented media following serum
starvation as noted under "Experimental Procedures." Serum
deprivation resulted in elevated levels of CARP-1, whereas addition of serum
resulted in a time-dependent decrease in CARP-1 expression
(Fig. 5C). The data in
Fig. 5 demonstrate that CARP-1
expression is regulated by growth factors as well as agents like CD437 and
adriamycin. Because CD437 treatment of HBC cells results in
G1/G0 cell cycle arrest
(6), the increased levels of
CARP-1 either in the presence of CD437 or in the absence of serum may support
a role for CARP-1 in the progression of the cell cycle.
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CARP-1 Is a Perinuclear Protein and Is Expressed in Different
Epithelial Cancer Cell TypesTo study CARP-1 localization, HBC
cells were transfected with plasmid clone 6.1, followed by selection of
multiple, independent sublines expressing myc-His-tagged CARP-1
(Fig. 6A).
Immunocytochemical localization of CARP-1 was investigated as described under
"Experimental Procedures." As shown in
Fig. 6B, CARP-1 is
present in the perinuclear compartment. Perinuclear localization of CARP-1 was
further corroborated by confocal microscopic analysis of a breast cancer
biopsy specimen following dual labeling utilizing antibodies for CARP-1
(
1 antibody) and PCNA. Expression of PCNA (labeled with green
fluorescent marker) is exclusive to the nuclear compartment, whereas sporadic
expression of CARP-1 (labeled with red fluorescent marker) is noted
in the surrounding perinuclear regions of the cells
(Fig. 6B). In the
absence of yellow color (observed where the red and green colors
overlap) fluorescence in the confocal micrograph in either the nuclear or
perinuclear compartments together with the data from immunocytochemical
analyses strongly suggest that CARP-1 is a perinuclear protein. In addition,
CARP-1 is expressed ubiquitously in various cancer cell lines of human breast,
colon, and prostate and pancreatic and leukemia origins as indicated by RT-PCR
amplification of CARP-1 and ribosomal phosphoprotein 36B4
(24) cDNAs, as well as Western
immunoblots (not shown).
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CARP-1 Regulates Expression of Key Cell Cycle Regulatory
ProteinsTo elucidate the CARP-1 role in signaling pathways
regulating cellular growth and/or apoptosis, we investigated the CARP-1 target
genes by gene array technology as detailed under "Experimental
Procedures." A subset of genes showing alterations in their expression
in clone 1.6 subline 9 when compared with their expression in the vector
pcDNA3/Hygro subline 1 are listed in Table
II. Because clone 1.6-transfected subline 9 expresses 50% reduced
levels of CARP-1 (see Fig. 4),
it is noteworthy that several genes associated with cell cycle progression
and/or cell proliferation such as c-myc, cyclin B1, DNA topoisomerase
II
, p21rac1, and histone deacetylase (HDAC) 3C were
significantly up-regulated (Table
II). On the other hand, the array data did not show altered
expression of genes such as proliferating cell nuclear antigen (PCNA) and
stress-activated protein kinase 4 (p38
) in clone 1.6-transfected
subline 9 (not shown). Together, the data suggest that CARP-1 targets
expression of specific genes including those that are regulators of cell cycle
progression and/or cell proliferation.
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Whether reduced levels of CARP-1 result in altered expression of the proteins corresponding to the above noted genes was studied by Western immunoblotting. Furthermore, because CD437 treatment induces CARP-1 expression in HBC cells (Fig. 5), we hypothesized that CD437 treatment will also alter expression of above CARP-1 target genes in HBC cells. Expression of oncogene c-myc as well as CDKI p21WAF1/CIP1 proteins was analyzed in HBC sublines expressing reduced CARP-1 (Fig. 4) as well as CD437-treated or untreated parental MDAMB-468 HBC cells. Indeed, reduced expression of CARP-1 results in increased levels of c-Myc (Fig. 7A) and reduced levels of CDKI p21WAF1/CIP1 (Fig. 7C) in multiple independent sublines expressing reduced CARP-1. CD437 treatment of parental MDA-MB-468 HBC cells, on the other hand, resulted in reduced expression of c-Myc (Fig. 7B) and elevated expression of p21WAF1/CIP1 protein (Fig. 7D). CD437 treatment has been shown to cause elevated expression of p21WAF1/CIP1 mRNA in HBC cells (10), and together with the data in Fig. 7, C and D, strongly suggest that CARP-1 targets p21WAF1/CIP1 expression in the presence of CD437. This conclusion is further supported by the observation where clone 1.6 sublines expressing reduced CARP-1 did not elicit enhanced p21WAF1/CIP1 expression following treatment with CD437. CD437 treatment, on the other hand, resulted in increased levels of p21WAF1/CIP1 in clone 1.6 sublines that did not express reduced CARP-1 (Fig. 7E). Thus, CD437-dependent signaling involves increased expression of CARP-1 that, in turn, down-regulates c-Myc and up-regulates CDKI p21WAF1/CIP1 proteins leading to cell cycle arrest. This property of CARP-1 may then serve as one of the contributing factor(s) in inducing apoptosis in the presence of CD437.
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In addition to regulation of c-Myc and p21WAF1/CIP1 by CARP-1,
expression of cyclin B1, p21Rac1, HDAC3, and DNA topoisomerase II
in
multiple HBC sublines expressing clone 1.6 was investigated by Western
immunoblotting. As expected, reduced levels of CARP-1 results in increased
expression of cyclin B1, p21Rac1, HDAC3, and DNA topoisomerase II
(Fig. 7F), suggesting
that CARP-1 not only targets c-Myc and p21WAF1/CIP1 expression, but
it also interferes with expression of other genes involved in the pathways
regulating cell proliferation and/or cell cycle progression. Because
chemotherapeutic agents such as adriamycin and etoposide are known to target
DNA topoisomerases, the increased expression of DNA topoisomerase II
in
clone 1.6-expressing sublines may also be a contributing factor in their
resistance to apoptosis in the presence of etoposide or adriamycin.
Because depletion of CARP-1 results in elevated expression of genes that are positive regulators of cell cycle and/or cell growth, we wished to determine whether there were alterations in any of the phases of the cell cycle in the case of the sublines expressing reduced levels of CARP-1 that may consequently have resulted in their increased viabilities and reduced apoptosis in the presence of CD437. Flow cytometric analyses of parental MDA-MB-468 HBC cells, HBC subline transfected with the vector plasmid only, two sublines expressing reduced CARP-1 (clone 1.6 sublines 9 and 10), or two sublines expressing reduced c-Myc (c-Myc antisense sublines 3, 6; see below) showed no significant alterations in their cell cycle phase distribution or DNA contents (not shown).
Expression of CARP-1 Alters Cellular Levels of CARP-1 Target Genes and
Induces ApoptosisBecause decreased levels of CARP-1 resulted in
reduced expression of CDKI p21WAF1/CIP1, and elevated levels of
c-Myc and DNA topoisomerase II
, we investigated whether overexpression
of CARP-1 will result in altered levels of the above genes and induction of
apoptosis. To this end, we utilized retroviral expression system to generate
CARP-1-expressing retroviruses. Interestingly, multiple transfection attempts
yielded a significantly lower number of sublines expressing retroviruses
encoding CARP-1-myc-His fusion protein when compared with transfections with
alkaline phosphatase encoding the retroviral vector (not shown). Among a total
of 11 PT-67 sublines, CARP-1 expression was noted to be highest in 3 sublines
(lines 16.4, 16.5, and 16.6; Fig.
8A). PT-67 sublines 16.4, 16.6 expressing retroviruses
encoding CARP-1-myc-His fusion protein, and PT-67 sublines 1 and 2 expressing
retroviruses encoding alkaline phosphatase were selected to determine viral
titers per manufacturer's suggested protocols. Both the PT-67 sublines 1 and 2
yielded viral titers of
104 colony-forming units/ml, whereas
both the PT-67 sublines 16.4 and 16.6 yielded viral titers of
102 colony-forming units/ml. It is likely that the lower
titers of the viruses derived from PT-67 sublines 16.4 and 16.6 were because
of apoptosis caused by overexpression of CARP-1 following viral transduction
of the target cells (see below). Together with the observation that
transfections of retroviral vector encoding CARP-1-myc-His fusion protein
resulted in isolation of greatly reduced numbers of sublines when compared
with their alkaline phosphatasetransfected counterparts would suggest that
CARP-1 expression beyond a threshold is detrimental to cell survival.
|
Next, parental MDA-MB-468 HBC cells were cultured in the presence of 5 ml of supernatants derived from either parental non-transfected PT-67 cells, PT-67 pLAPSN subline 1, PT-67 subline 16.4, or subline 16.6 for a period of 72 h, followed by determination of apoptosis. Transduction of HBC cells with retroviruses expressing CARP-1-myc-His fusion protein resulted in apoptosis 45 times higher than those transduced with supernatants derived from either untransfected PT-67 cells or PT-67 pLAPSN subline 1 (Fig. 8B). That transduction of HBC cells with retroviruses from PT-67 sublines 16.4 or 16.6 indeed resulted in apoptosis of HBC cells was corroborated by the presence of reduced levels of procaspase 3 noted in Western immunoblots of the respective lysates (Fig. 8C). The data in Fig. 8, B and C, support our hypothesis that overexpression of CARP-1 indeed results in apoptosis of the target cells and that this property of CARP-1 may have contributed to the lower retroviral titers of the supernatants derived from PT-67 sublines 16.4 and 16.6.
Whether CARP-1 expression targeted genes regulating cell cycle progression
and/or cell proliferation as noted in Fig.
7 was examined next. Indeed, Western immunoblots revealed altered
expression of c-Myc, CDKI p21WAF1/CIP1, and DNA topoisomerase
II
in the parental MDA-MB-468 HBC cells that were transduced with
retroviruses expressing CARP-1 (Fig.
8D). The data in Fig.
8D also underscore the fact that altered expression of
the genes noted in HBC sublines expressing reduced CARP-1
(Fig. 7) was independent of the
effects of position and/or site(s) of integration of plasmid clone 1.6.
CARP-1 Interacts with 14-3-3 ProteinTo further define mechanisms of CARP-1-dependent apoptosis, we utilized HBC cells as well as PT-67 cells expressing myc-His-tagged CARP-1 (Figs. 6 and 8) in conjunction with immunoprecipitation experiments. Because CARP-1 is a perinuclear protein, and in light of the fact that CARP-1 overexpression triggers apoptosis, we hypothesized that CARP-1 interaction with protein(s) located at the plasma membrane or in the perinuclear compartment plays an important role in apoptosis induction. HBC cell lysates were incubated with either anti-epidermal growth factor receptor (EGFR) antibody or anti-14-3-3 antibody, followed by analysis of immunoprecipitates for the presence of CARP-1 by Western blots as described under "Experimental Procedures." As shown in Fig. 9, CARP-1 presence is noted in the lanes containing immunoprecipitates derived from 14-3-3 antibody, whereas anti-EGFR antibodies failed to immunoprecipitate CARP-1.
|
Depletion of c-Myc Sensitizes Cells to Apoptosis by CARP-1, whereas
Expression of c-Myc or 14-3-3 Interferes with CARP-1
ApoptosisWhether c-Myc or 14-3-3 proteins play roles in
CARP-1-mediated apoptosis was investigated as follows. Independent HBC
sublines expressing
50% reduced levels of c-Myc
(Fig. 10, A and
B) were generated by transfecting c-Myc antisense cDNA as
described under "Experimental Procedures." As noted in
Fig. 8, treatment of wild-type
HBC cells with retroviruses expressing myc-His-tagged CARP-1 resulted in
apoptosis over a period of 72 h. Transduction of wild-type or the
vector-transfected HBC subline with retroviruses expressing myc-His-tagged
CARP-1 over a period of 24 h resulted in marginally elevated apoptosis when
compared with apoptosis noted in cells transduced with retroviruses expressing
alkaline phosphatase (Fig.
10C). On the other hand, transduction of sublines
harboring reduced c-Myc with retroviruses expressing myc-His-tagged CARP-1
protein over a period of 24 h resulted in apoptosis
3 times higher than
that noted in cells transduced with retroviruses expressing alkaline
phosphatase (Fig.
10C). Thus, data in
Fig. 10C suggest that
loss of c-Myc sensitizes HBC cells to apoptosis by CARP-1.
|
Next, wild-type MDA-MB-468 HBC cells were transfected with vector plasmid
pcDNA3, pcDNA3-c-Myc clone 1
(16), or pEF-1/14-3-3 clone 1,
followed by incubation of cells with retroviruses expressing alkaline
phosphatase or myc-His-tagged CARP-1 for a period of 48 h. CARP-1 transduction
of cells transfected with vector plasmid resulted in
2.5-fold higher
apoptosis when compared with their alkaline phosphatase transduced
counterparts, whereas expression of c-Myc or 14-3-3 inhibited apoptosis
induced by CARP-1 transduction (Fig.
10D). Together, the data in
Fig. 10 underscore the fact
that c-Myc and 14-3-3 proteins play important roles in CARP-1-dependent
apoptosis.
| DISCUSSION |
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|
|
|---|
-selective adamantyl retinoid that causes cell
cycle arrest and apoptosis in a number of cell types. CD437 displays poor
binding and trans-activation of RAR
and RAR
, and no binding to
RXRs (25). CD437 also causes
apoptosis of human leukemia cell line HL-60R that does not express any
functional RARs (7), indicating
that CD437 functions independently of direct interactions with retinoid
receptors. Although CD437-mediated growth arrest and apoptosis has been shown
to involve elevated expression of CDKI p21WAF1/CIP1, GADD45,
activation of caspases, and release of mitochondrial cytochrome c
(613),
the mechanism(s) involved remain to be fully delineated. We undertook a
functional gene knockout approach to further elucidate signaling pathway(s)
utilized by CD437. This approach has been used previously
(14,
15,
19) to identify genes involved
in apoptosis signaling in the presence of interferons and/or retinoic acid. By
transfecting episomal plasmids containing antisense cDNAs derived from the
cDNA library generated from untreated as well as CD437-treated HBC cells, we
obtained multiple independent sublines that exhibited resistance to the
combined presence of hygromycin (an antibiotic resistance marker expressed by
the vector plasmid) and CD437 (not shown). One subline harbored a recombinant
plasmid, termed AS-6, which contained an insert that belongs to an mRNA of
3.8 kb size. This mRNA encodes a novel
130-kDa protein termed
CARP-1. CARP-1 is an important target of apoptosis signaling induced by agents
like CD437 or adriamycin. CARP-1 interacts with cytoplasmic 14-3-3 protein(s)
and also plays a role in cell cycle progression. Increased expression of
CARP-1 by CD437 results in sequestration of 14-3-3 protein(s) and altered
expression of many key cell cycle regulatory proteins that together lead to
cell growth inhibition and apoptosis. CARP-1 serves as a key mediator of apoptosis signaling as supported by data in Fig. 8. Expression of CARP-1, following transduction of HBC cells with retroviruses expressing CARP-1, results in apoptosis and reduced levels of procaspase 3. It is possible that expression of CARP-1 beyond a threshold induces apoptosis, since transfection of plasmids expressing CARP-1 under the control of CMV immediate early promoter (such as plasmid clone 6.1 or 16.1) into HBC, HCT-116 colon cancer cells (not shown), and NIH 3T3-derived PT-67 cells also resulted in their apoptosis. Whether the HBC or the PT-67 sublines (Figs. 6 and 8) express CARP-1 below a threshold that allowed for successful selection and propagation of these sublines or CARP-1 overexpression resulted in their altered genotype that subsequently contributed toward their selection and propagation remains to be determined.
The precise mechanism(s) utilized by CARP-1 to induce apoptosis are yet to
be clarified. Whether CARP-1 directly binds 14-3-3 is not clear. Nevertheless,
CARP-1 interaction with cytoplasmic 14-3-3 protein(s)
(Fig. 9) suggests that
CD437-dependent elevated levels of CARP-1 sequester 14-3-3 protein and, in
turn, may result in inhibition of 14-3-3 binding with the pro-apoptotic
protein Bad. 14-3-3 proteins are a family of small, evolutionarily conserved
proteins that are found in all vertebrates, invertebrates, plants, and fungi.
14-3-3 proteins display wide ranging functions. Mammalian 14-3-3 proteins have
been classified as typical (
/
,
/
,
,
,
and
) or atypical (
and
) isoforms based on their
distribution and functions. 14-3-3 proteins are involved in signal
transduction in the mitogen-activated protein kinase cascade
(21,
26). The mitogenic signals
activate AKT/PKB kinases that, in turn, phosphorylate the pro-apoptotic
protein Bad. The 14-3-3 proteins then bind with phosphorylated Bad and prevent
it from inhibiting BclXL, thereby inhibiting apoptosis and
promoting cell proliferation. CARP-1 sequestration of 14-3-3 thus likely
contributes to apoptosis signaling by promoting Bad inhibition of
BclXL followed by release of cytochrome c from
mitochondria and subsequent apoptosis. Thus, as summarized in
Fig. 11, the data presented in
this report suggest that CARP-1-dependent apoptosis utilizes multiple pathways
including CARP-1 interaction with 14-3-3 and CARP-1-mediated altered levels of
cell cycle regulators such as c-Myc, cyclin B, and CDKI
p21WAF1/CIP1. Loss of c-Myc sensitizes cells to CARP-1-mediated
apoptosis (Fig. 10C).
Overexpression of c-Myc or 14-3-3 proteins, on the other hand, inhibits
CARP-1-dependent apoptosis in HBC cells
(Fig. 10D) as well as
activation of caspase 3 in HBC and monkey kidney COS-7 cells (not shown).
|
Whether CARP-1 regulation of expression of the above noted cell cycle regulatory genes utilizes 14-3-3-dependent and/or -independent pathways remains to be delineated. CARP-1 regulation of CDKI p21WAF1/CIP1, nonetheless, underscores its growth inhibitory/anti-proliferative property (Figs. 7 and 8). Although reduction p21WAF1/CIP1 mRNA levels was not noted in the array experiment (Table II), it is likely that reduced levels of p21WAF1/CIP1 mRNA in clone 1.6 subline 9 resulted in signals that were below the threshold of detection set for densitometric quantitation of the autoradiographs. In light of the fact that CD437 regulates CDKI p21WAF1/CIP1 mRNA stability (10), whether CARP-1 regulates stability of p21WAF1/CIP1 mRNA utilizing its RNA-binding cold-shock motif or other novel domain(s) is not known. Alternatively, due to the existence of reciprocal regulation between c-Myc and p21WAF1/CIP1 (27), and given that c-Myc down-regulates p21WAF1/CIP1 (28), it has yet to be determined whether CARP-1 regulation of p21WAF1/CIP1 involves c-Myc. In the absence of direct interactions of CARP-1 with c-Myc or p21WAF1/CIP1, as demonstrated by co-immunoprecipitation and Western immunoblot experiments (not shown), and the fact that CARP-1 is present in the perinuclear region indicate that CARP-1 regulation of c-Myc and p21WAF1/CIP1 may utilize additional factor(s)/mediator(s). Moreover, that CARP-1 may utilize post-transcriptional and/or post-translational mechanisms to regulate levels of its target genes is supported by the fact that CARP-1-dependent alterations in levels of p21 Rac1 and HDAC3 mRNAs (Table II) were quite different when compared with the respective proteins in HBC sublines expressing reduced CARP-1 (Fig. 7F).
That CARP-1 is an important regulator of the cell cycle is supported by the observations that treatment of cells with either CD437 or adriamycin resulted in a time-dependent increase in expression of CARP-1 (Fig. 5). We have shown previously (6, 29) that exposure to CD437 causes G1/G0 and S phase cell cycle arrest in HBC and prostate cancer cells, respectively, followed by their apoptosis. Rapid induction of CARP-1 expression following treatment with CD437 may indicate a critical role for CARP-1 in signaling events regulating the cell cycle. Similar induction of CARP-1 expression was also noted in the case of cells treated with adriamycin, suggesting the existence of overlap among signaling pathways induced by CD437 and adriamycin. CARP-1 involvement in the regulating cell cycle was further highlighted by the experiment where supplementation of serum resulted in a time-dependent decreased expression of CARP-1 (Fig. 5). Whether CD437, adriamycin, or serum components (such as growth factors) regulate CARP-1 expression by transcriptional, post-transcriptional, or post-translational mechanisms remains to be determined.
Our report highlights, for the first time, that CD437 targets pathways
converging on topoisomerase II
(see Figs.
3,
5,
7, and
8). Because topoisomerases are
known to regulate cellular DNA topology
(30), it is likely that
signaling induced by CD437 interferes with the balance between DNA
supercoiling forces. In this context, it is interesting to note that HBC
sublines expressing CARP-1 antisense do not have similar viability when
treated with adriamycin and etoposide. Because both drugs target cellular
topoisomerase II
, the data shown in
Fig. 2 suggest that CARP-1
regulation of signaling by adriamycin utilizes both topoisomerase
II
-dependent as well as -independent pathways. Furthermore, it is of
note that CD437 treatment of HBC sublines with reduced CARP-1 did not elicit
cellular viabilities equal to their non-treated counterparts
(Fig. 2), and moreover, that
none of the CARP-1 antisense-expressing sublines was totally resistant to
CD437-induced apoptosis (Fig.
3) may point to the existence of additional significant signal
transducers. This possibility may also be supported by the observation that
CD437-dependent alteration in c-Myc levels in parental HBC cells
(Fig. 7B) are quite
different when compared with the altered levels of c-Myc noted in the HBC
sublines expressing reduced CARP-1 (Fig.
7A).
CARP-1 protein possesses putative DNA-binding (bihelical) and RNA-binding
cold-shock motifs. A number of proteins including poly(ADP-ribose) polymerase
(PARP), ATP-dependent DNA helicase II p70 subunit, apurinic endonuclease-redox
protein, spliceosome-associated protein 145 (SAP 145), DNA repair protein
RAD18, DEA(D/H) (Asp-Glu-Ala-(Asp/His)) boxbinding protein 1, and
heterogeneous nuclear ribonucleoprotein U possess a similar DNA-binding
(bihelical) motif. Accumulating evidence suggests that PARP plays dual roles.
In the presence of its substrate NAD and DNA strand breakage, PARP functions
as a repair enzyme. In the absence of NAD, PARP promotes activator-dependent
transcription by interacting with RNA polymerase II-associated factors
(31). PARP also binds
transcription enhancer factor 1 and transcription factor AP-2 to increase
transcription of muscle-specific genes and AP-2-mediated transcription,
respectively (32,
33). PARP has also been shown
to up-regulate the E2F-1 gene promoter
(34) further corroborating its
role as a transcription factor. PARP-dependent silencing of transcription
involves poly(ADP-ribosyl)ation of specific transcription factors, which
prevents their binding to the respective DNA consensus sequences and formation
of active transcription complexes
(35). Whether CARP-1 functions
as a DNA-binding transcription factor is unclear. Because CARP-1 is present in
the perinuclear compartment (Fig.
6) and also regulates expression of topoisomerase II
, its
function(s) in regulating DNA topology are less likely to entail direct
interactions with the bihelical nuclear DNA. However, given the perinuclear
localization of CARP-1, it remains to be determined whether CARP-1 regulates
the expression of gene(s) encoded by the bihelical DNAs of organelles such as
mitochondria.
In addition, the proteins like Rho transcription termination factor, Y box factor homolog APY1, ribonuclease R, and exoribonuclease II proteins possess an RNA-binding cold-shock protein domain similar to that present in CARP-1. In this context, it is noteworthy that reduced expression of CARP-1 results in altered levels of several mRNAs (Table II). Thus, together with the data indicating perinuclear presence of CARP-1 in HBC (Fig. 6) as well as the megakaryocytic cells in the human bone marrow (not shown), it is likely that RNA-binding cold-shock protein domain of CARP-1 is involved in regulating cellular RNA levels. Thus, CARP-1 may regulate levels of target mRNAs using cis-trans interactions involving the RNA-binding cold-shock motif or other novel domain(s). Whether CARP-1 belongs to a family of proteins that bind DNA, RNA, and/or co-factor(s), and whether its interactions with nucleic acid sequences and/or co-factor(s) play a role in growth arrest and/or apoptosis signaling are subjects of our ongoing investigation.
The mechanism(s) by which CARP-1 protein is reduced by overexpression of antisense RNA (Fig. 4) is not clear. Nevertheless, depletion of CARP-1 resulted in interfering with growth arrest and apoptosis signaling and, thereby, allowed for selection of CD437-resistant sublines. Given that CARP-1 targets multiple cell cycle regulatory proteins (Fig. 7), the selection of sublines expressing reduced CARP-1 without significant alterations of chromosomal contents and/or cell cycle distribution may point to the adaptive abilities of the HBC cells expressing CARP-1 antisense. Whether increased expression of c-Myc and/or cyclin B1 in HBC sublines expressing reduced CARP-1 contributes to prolonged survival of cells in the presence of CD437 or adriamycin remains to be determined.
In conclusion, this study reports identification and characterization of a protein involved in signaling pathways utilized by the agents such as a novel retinoid CD437 and chemotherapeutic drug adriamycin. Expression of CARP-1 induces apoptosis, whereas expression of c-Myc or 14-3-3 interferes with CARP-1-mediated apoptosis. Whether CARP-1 functions as a tumor suppressor protein that regulates biological properties of the cancer cells is currently under investigation.
| FOOTNOTES |
|---|
To whom correspondence should be addressed: Karmanos Cancer Institute, Dept.
of Internal Medicine, Rm. B4334, John D. Dingell Veterans Affairs Medical
Center, 4646 John Rd., Detroit, MI 48201. Tel.: 313-576-4492; Fax:
313-576-1112; E-mail:
Rishia{at}Karmanos.org.
1 The abbreviations used are: RAR, retinoic acid receptor; RXR, retinoid X
receptor; HBC, human breast carcinoma; ORF, open reading frame; PCNA,
proliferating cell nuclear antigen; RT-PCR, reverse-transcription PCR; FBS,
fetal bovine serum; ELISA, enzyme-linked immunosorbent assay; oligos,
oligonucleotides; MTT, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium
bromide; EGFR, epidermal growth factor receptor; PARP, poly(ADP-ribose)
polymerase; CDKI, cyclin-dependent kinase inhibitor; CMV, cytomegalovirus. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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