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J. Biol. Chem., Vol. 278, Issue 40, 38548-38556, October 3, 2003
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¶


From the
Department of Physiological Chemistry and Centre of Biomedical Genetics, University Medical Center Utrecht, Universiteitsweg 100, 3584 CG Utrecht, The Netherlands;
Max-Planck-Institut für Molekulare Physiologie, D-44227, Dortmund, Germany; ||BIOLOG Life Science Institute, 28071 Bremen, Germany, and **Department of Anatomy and Cell Biology, Medical Faculty, University of Bergen, 5009 Bergen, Norway
Received for publication, June 15, 2003
| ABSTRACT |
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| INTRODUCTION |
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The regulatory domain of Epac contains a cAMP-binding domain and a DEP domain. The DEP domain mediates membrane localization of Epac and is not involved in regulation of the exchange activity in vitro. The cAMP binding domain inhibits the catalytic activity in the absence of cAMP. The inhibition is released after binding of cAMP. An additional N-terminal cAMP binding domain is present in Epac2. This domain is not required to maintain the inactive state of Epac2 in the absence of cAMP (7).
Insight into the structural basis of the regulatory mechanism was obtained from the x-ray structure of the regulatory region of Epac2 containing both the cAMP binding domains and the DEP domain. The structure was solved in the absence of cAMP and was the first structure of a cAMP binding domain in the ligand-free state (8). Based on a structural comparison with cAMP-bound regulatory subunits of PKA (9, 10) it was proposed that cAMP binding induces a conformational change in the phosphate binding cassette (8). This conformational change allows a C-terminal helix containing a hinge region and a lid region to bend toward the cAMP binding site and to cover cAMP (8, 11). Considering the high conservation of residues involved in the conformational change, the proposed model seems to account for the activation of not only Epac but also PKAs and cAMP-regulated ion channels.
When analyzing the role of the lid region of Epac in more detail, we observed that a conserved VLVLE sequence in the C-terminal end of the lid region is mediating the inhibition of the catalytic region. Indeed, mutation of this region resulted in a constitutively active Epac. Surprisingly, single point mutations in the lid region either abolished cAMP-induced activity almost completely or resulted in an activity even higher then that of the wt protein. This indicated that after binding of cAMP, the lid region regulates the activation status of Epac (11).
Recently, we identified a novel cAMP analogue, 8-pCPT-2'-O-Me-cAMP, that binds and activates Epac efficiently both in vitro and in vivo. Most importantly, this compound was completely insensitive in activating PKA both in vitro and in vivo (12). In this study, we have characterized 8-pCPT-2'-O-Me-cAMP further and noted Epac that bound to this compound had a 3-fold higher vmax than Epac bound to cAMP. By testing other cAMP analogues and by mutational analysis, we found that the 2'-OH atom of cAMP is responsible for the super-activation. We propose a model of how it communicates with the lid region.
| EXPERIMENTAL PROCEDURES |
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Isothermal Titration CalorimetryTo analyze the binding of cAMP to the isolated cAMP-binding domain, a microcalorimeter (MicroCal, Inc.) was used. For details see Rehmann et al. (11).
In Vitro Activation of Rap1The experiments were performed as described earlier (11). Briefly, 200 nM of Rap1B loaded with the fluorescent GDP analogue 2'(3')-O-(N-methylanthraniloyl)-GDP were incubated in the presence of 20 µM GDP (Sigma) and 100 nM Epac. cAMP (Sigma) and analogues thereof were added as indicated for the individual experiments. Cyclic nucleotides except cAMP itself were obtained from BIOLOG Life Science Institute (Bremen, Germany). The nucleotide exchange was measured in real time as decay in fluorescence using a spectrofluorometer "spex1" (Spex Inc.). The origin of the decay is the release of the protein bound mGDP, which shows a higher fluorescence intensity in the hydrophobic environment of the protein than in the buffer solution. The obtained data were fitted to a single exponential decay and obtained rate constants (kobs) were plotted against the cAMP concentration. The concentration dependence of the rate constants were treated as a normal titration experiment.
All data analysis, fitting, and plotting were done with the Grafit 3.0 program (Erithacus Software).
| RESULTS |
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The RAAT motif is conserved in the regulatory domains of cAMP dependent kinases and is replaced by RTAT/N in cGMP-dependent kinases. It was shown that A-to-T mutations in PKA change the selectivity from cAMP to cGMP and vice versa (1517). In the case of EpacRD149328 the A280T mutation does indeed increase the affinity for cGMP, whereas the affinity for cAMP is not altered (Fig. 2C). Nevertheless, in the context of the auto-inhibited Epac, the mutant shows not an improved activation behavior after stimulation with cGMP but rather a 2-fold reduction of kmax after activation by cAMP (Fig. 2A). From these results, we conclude that although a number of cyclic nucleotides can bind to Epac, only cAMP is able to activate its GEF activity for Rap1. cAMP differs from the other three cNMPs by the structure of the nucleotide base, and cGMP, cIMP, and cXMP have in common that the 6-amino group of the base in cAMP is replaced by oxygen. To investigate whether indeed the N6 group is crucial for the activation of Epac, we tested the activity of the commonly employed N6-phenyl-cAMP analogue in vitro. As expected, this compound did not activate Epac (data not shown) but inhibits cAMP-induced activation in vitro rather efficiently (Fig. 2C).
Modification of the Cyclic PhosphateThe exocyclic oxygens of the phosphate group, which are not involved in the ring formation, can be replaced by sulfur in a stereo-specific manner generating Rp- and Sp-cAMPS isomers, respectively (Fig. 1). Rp-cAMPS is an inhibitor of PKA, whereas Sp-cAMPS, which has a strongly reduced affinity, is able to activate PKA (18, 19). Similar to the findings for PKA, Rp-cAMPS does not active Epac but rather inhibits cAMP-induced activation of Epac (Fig. 3, A and B). In analogy to PKA, Sp-cAMPS is able to activate Epac (Fig. 3B), with a slight modification of both AC50 and kmax.
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Modifications at the 8- and 2-Positions of the BaseTo optimize the membrane permeability of cAMP, the 8-position of the base is often modified. We have tested a number of these analogues for their effect on the activation of GEF activity of Epac. All 8-modified analogues tested are active, but the maximal GEF activity at saturating concentrations of is reduced (Fig. 4A). In addition, these modifications affect the AC50, many of them activating more efficiently than cAMP. Most notable is the 50-fold decrease in AC50 of 8-pCPT-cAMP compared with cAMP (Fig. 4). Whereas all 8-modifications activate Epac and affect both the kmax and the AC50, 2-chloro-cAMP has kmax and AC50 values for Epac similar to those of cAMP (data not shown).
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Modification of the 2'-Position of the RiboseOne of the most striking differences between the cAMP-binding domains of Epac and those of other proteins is the presence of a glutamine at position 270 of Epac, which corresponds to a glutamate that is totally conserved in all other cAMP- or cGMP-binding proteins. Because in PKA this glutamate was shown to form a hydrogen bond with the 2'-OH group of the ribose (9) and was shown to be crucial for high affinity binding (20), we wondered whether Epac would tolerate modifications of the 2'-OH group. Its "deletion" in 2'-deoxy-cAMP results in a drastic increase of the AC50, and kmax could not be reached even at 1000 µM nucleotide (Fig. 5A). This argues that the 2'-OH group is important for binding and activation. To maintain the oxygen, we generate 2'-O-Me-cAMP and found a more moderate reduction of the AC50, which was estimated to be in the rage of 100 µM. Surprisingly, 2'-O-Me-cAMP induced guanine nucleotide exchange rates (kobs) much higher then the kmax of cAMP, even though 2'-O-Me-cAMP was used at non-saturating conditions.
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Because the 8-pCPT modification was found to decrease the AC50 (Fig. 4A), we wondered whether this positive effect on affinity could be combined with the positive effect on kmax of the 2'-O-Me substitution. Indeed, 8-pCPT-2'-O-Me-cAMP showed a decreased AC50 and an increased kmax (Fig. 5, A and C). The AC50 of 8-pCPT-2'-O-Me-cAMP (1.8 µM) is only slightly lower than the AC50 of 8-pCPT-cAMP (0.9 µM) and still 25 times lower than the AC50 found for cAMP. In addition, the kmax of 8-pCPT-2'-O-Me-cAMP is 7.2-fold higher than 8-pCPT-cAMP and still 3.6-fold higher than cAMP. To demonstrate that this superactivation of Epac by 8-pCPT-2'-O-Me-cAMP is caused by a change in equilibrium between an active an inactive conformation of Epac, not by any different conditions of the assay, we incubated Epac induced by 8-pCPT-2'-O-Me-cAMP with increasing concentrations of cAMP. We found that with increasing concentrations of cAMP, the GEF activity reduced to a level observed for cAMP alone. Similarly, 8-chloro-cAMP inhibits 8-pCPT-2'-O-Me-cAMP-induced GEF activity to a level normally achieved by this analogue, which is half that of cAMP. We can thus conclude that the diverse effects of the 8-pCPT and the 2'-O-Me modifications on inducing GEF activity can be combined to create a super-activating cAMP analogue that specifically activates Epac and can be used as a tool to decipher the role of Rap1 in signal transduction pathways (12, 21).
Role of the Gln-270 in Binding and ActivationTo analyze the role of Q270 in the interaction with the 2'OH group of cAMP we generated the mutants EpacQ270A and EpacQ270E. The mutation Q270E mimics the residue conserved in PKA. Importantly, the affinity of cAMP for the isolated cAMP-binding domains of both mutants was not affected, demonstrating that unlike PKA, this residue is not involved in binding of cAMP (Fig. 6B). The mutants were then further analyzed, in the context of the auto-inhibited Epac, for their activation properties in response to stimulation by cAMP, 2'-deoxy-cAMP, and 8-pCPT-2'-O-Me-cAMP (Fig. 6A). For cAMP, a 2-fold higher kmax was observed for both mutants, whereas the AC50 remained unaffected, indicating that Gln-270 is not crucial for the activation mechanism of cAMP and, if anything, has an inhibitory role on full activation. Activation by 8-pCPT-2'-OMe-cAMP is differently affected by the two mutations: whereas the Q270E mutation had no effect on the kmax but slightly decreased the AC50, the Q270A mutation decreased kmax and left the AC50 unaffected. The AC50 of 2'deoxy-cAMP is too high to determine kmax either for wild-type and mutant proteins (Fig. 6). From these results, we conclude that the presence of a hydrogen bond donor or acceptor in the position of residue Gln-270 does contribute to normal activation by cAMP and super-activation by 8-pCPT-2'-O-Me-cAMP in a manner that is not immediately obvious in the absence of a cAMP-bound 3D structure.
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The lid Region Is Involved in Super-activationRecently we mutated conserved polar residues Glu-308, Thr-311, Arg-313, and His-317 in the lid of Epac1 (11). As isolated cAMP-binding domains, these mutant proteins have a 2-fold lower affinity for cAMP (except H317A, for which the affinity for cAMP was unaffected). In addition, these mutations affected cAMP-induced activation of Epac (Ref. 11 and Fig. 7). By comparing the effects of cAMP, 8-pCPT-cAMP, and 8-pCPT-2'-O-Me-cAMP, we observe that R313A and T311A have a roughly similar effect on the activation of Epac by both cAMP and 8-pCPT-cAMP but, surprisingly, an opposite effect on the activation by 8-pCPT-2'-O-Me-cAMP (Fig. 7), R313A did not influence the kmax of 8-pCPT-cAMP and cAMP but reduced the kmax of 8-pCPT-2'-O-Me-cAMP almost 2-fold. T311A increased the kmax of cAMP and 8-pCPT-2'-O-Me-cAMP 2-fold, but has no effect on the kmax of 8-pCPT-2'-O-Me-cAMP. For H317A, the kmax achieved with 8-pCPT-2'-O-Me was greatly reduced compared with wild type, whereas for E308A, the kmax was even increased by about 25%. In addition, the AC50 of the analogues was affected by the mutations. Most notably, although the affinity for cAMP for the isolated cAMP-binding domain of T311A and T311A was reduced, the AC50 was considerably lower. From these results, we conclude that the lid region is involved in the super-activation of Epac by 8-pCPT-2'-O-Me-cAMP. In particular, the differential effect of 8-pCPT-2'-O-Me-cAMP compared with cAMP and 8-pCPT-cAMP on R313A and T311A indicates that the 2'-O-Megroup communicates with the lid to induce super-activation.
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| DISCUSSION |
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With respect to cyclic nucleotide-dependent protein kinases, the RAAT and the RTAT/N motif were identified to determine the cAMP and cGMP specificity, respectively. From modeling studies, an extra hydrogen bound between the 2-NH2 group of the guanine and the first threonine in RTAT/N was predicted (23). These theoretical considerations were confirmed by site-directed mutagenesis for both PKA (17, 24) and PKG (16), which demonstrated an increased cGMP affinity because of the presence of the threonine. Similarly, EpacRD149328A280T showed an increased affinity for cGMP as well. However, EpacA280T showed no improved activation by cGMP in terms of kmax. Thus, the A/T conversion increased the affinity of cGMP for Epac but had no effect on the activation of Epac by cGMP. Interestingly, as predicted from studies with PKA (15) and PKG (16), the A/T conversion had little or no affect on the affinity for cAMP. However it did reduce the maximal activation of Epac by cAMP, showing that the RAAT sequence is involved not only in conferring specificity in binding but also in transferring the cAMP binding information to the activation of Epac.
From the structural analysis of Epac and PKA, it was clear that the cyclic phosphate group is critical for the activation of both proteins. Indeed, Rp-cAMPS, in which one of the free oxygens of the phosphate group is replaced by a sulfur atom, is an inhibitor of PKA (18, 19), whereas Rp-cGMPS inhibits PKG (25). Indeed, Rp-cAMPS also inhibits cAMP-induced Epac activation. This supports strongly the common activation mechanism of these proteins as we proposed previously (8); i.e. the replacement of the equatorial oxygen perturbs the hydrogen bonding between the phosphate and an alanine in the phosphate binding cassette and prevents the reorientation of the phosphate binding cassette, the first step in the activation of both proteins.
Modifications at the 8-position of the base are commonly used as cNMP analogues for PKA and PKG, because these modifications both increase the permeability for cells and reduce the AC50 to activate these proteins (22, 26). In particular, 8-pCPT-cAMP and 8-bromo-cAMP are widely used for in vivo experiments. The 8-bromo substitution was shown to stabilize the syn conformation of cAMP, the conformation of cAMP adopted in the crystal structures of PKAI and PKAII (9, 10), which provides a possible explanation for the decreased AC50. The analogues also have a lower AC50 for Epac compared with cAMP; in particular, the 8-pCPT modification resulted in a 50-fold reduction in AC50. However, the maximal activation of Epac by these analogues is 2-fold lower compared with cAMP, indicating that modifications at the 8-position also affect the kmax of the protein. However, not all modifications of the 8-positions affect the behavior of cAMP on Epac. e.g. 8-ABA-cAMP.
The highly conserved glutamate in the FGELAL sequence of the phosphate binding cassette of PKA, PKG, cyclic nucleotidegated ion channels, and even the bacterial CAP protein, is replaced by a glutamine (Gln-270) in Epac1 and a lysine in Epac2. Glutamic acid was found to form a hydrogen bond with the 2'-OH group of the cyclic nucleotide and was shown to be absolutely essential for the binding of cAMP to PKA (20). Although the Epac structure analysis (8) showed that the corresponding residue would be close to the 2'-OH group, a potential interaction between Gln-270 would not significantly contribute to the binding affinity for cAMP. Neither the AC50 of EpacQ270A or EpacQ270E nor the Kd of Epac149328Q270A or Epac149328Q270E was altered, which suggests that the glutamine in Epac is not involved in the direct binding of cAMP and questions the necessity of the 2'-OH group for activation of Epac. However, drastic effects on activation of GEF activity with respect to both AC50 and kmax were obtained by modifications of the 2'-OH group of the ribose. Replacement of the 2'-OH group by H or by OCH3 leads to an increase of the AC50, indicating that interactions of the 2'-OH-group contribute to the binding of Epac but not via Gln-270. Indeed, the affinity of 2'-deoxy-cAMP for the cAMP binding domain was dramatically reduced. However, this reduction was much less, but still 10-fold, when the oxygen was preserved by replacing the OH group for an O-Me group (27). This indicated that the OH group still confers binding energy for cAMP to Epac, presumably through its interaction with the conserved glycine in the FGELAL sequence. Interestingly, 2'-O-Me-cAMP (and perhaps 2'-deoxy-cAMP) at non-saturated concentration induces kobs values that are higher then the kmax of cAMP-mediated activation. Apparently, the 2'-O-Me-group shifts the conformational equilibrium of the nucleotide-bound Epac more efficiently to the active site. Combined with the increased affinity of the 8-pCPT-group, both modifications resulted in a highly specific "superactivator" of Epac (12). The effect of the increased kmax is in part mediated by Gln-270. The kmax of 8-pCPT-2'-O-Me-cAMP-mediated activation of EpacQ270A (but not EpacQ270E) is decreased significantly. On the other hand, the kmax of cAMP-mediated activation for both mutants is increased compared with wild type. This indicates that Gln-270 disfavors the cAMP-bound active state but favors the 8-pCPT-2-O-Me-cAMP-bound active state.
Mutagenesis of the lid demonstrate a role of this region in the super-activation behavior of 8-pCPT-2'-O-Me-cAMP, although the role of individual residues in this process is still unclear. A potential link between the lid and the OH/OCH3-group and/or Gln-270 is His-317. In all known PKA structures, a hydrogen bond between the glutamate in the FGELAL sequence (corresponding to Gln-270 in Epac1) and a tyrosine/tryptophane in the lid is found. This tyrosine/tryptophane may correspond to His-317. Indeed, cAMP- and 8-pPCT-2'-O-Me-cAMP-mediated activation are drastically reduced in EpacH317A. Arg-313 may be specifically responsive to the 2'-O-Me-group, because the kmax of cAMP is not altered, whereas the kmax of 8-pCPT-2'-O-Me-cAMP is reduced 2-fold. In contrast, Thr-311 may be specifically responsive to the 2'-OH-group. Further structural and mutational analysis of both the lid and the catalytic domain are required to fully understand the molecular mechanism of Epac activation by cAMP and cAMP analogues.
| FOOTNOTES |
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¶ Supported by the Council of Earth and Life Science of the Netherlands Organization for Scientific Research (NWO-CW) and the Human Frontier Science Program (HFSP). ![]()

To whom correspondence should be addressed. Tel.: 31302538988; Fax: 31302539035; E-mail: j.l.bos{at}med.uu.nl.
1 The abbreviations used are: Epac, exchange protein directly activated by cAMP; GEF, guanine nucleotide exchange factor; DEP, Dishevelled, Egal-10, Pleckstrin; PKA, protein kinase A; wt, wild type; 2'-O-Me, 2'-O-methyl; 8-pCPT, 8-(4-chlorophenylthio); Rp-cAMPS, adenosine-3',5'-cyclicmonophosphorothioate, Rp-isomer; Sp-cAMPS, adenosine-3',5'-cyclicmonophosphorothioate, Sp-isomer; PKG, protein kinase G. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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