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J. Biol. Chem., Vol. 278, Issue 45, 44412-44416, November 7, 2003
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From the Department of Hematology and Oncology, Graduate School of Medicine, Kyoto University, 54 Shogoin-Kawaracho, Sakyo-ku, Kyoto 606-8507, Japan
Received for publication, August 22, 2003 , and in revised form, September 10, 2003.
| ABSTRACT |
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| INTRODUCTION |
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vif) display their non-infectious phenotype when produced by primary human T cells and a restricted number of cell lines such as H9 and CEM. These cells are termed non-permissive, whereas many other cell lines, such as SupT1 and 293T, which support the production of infectious
vif virions, are termed permissive (1, 2). Previous studies suggested that non-permissive cells possess certain cellular anti-HIV-1 factor(s) to suppress the virion infectivity, which is overcome by Vif (4, 5). Recently a candidate of this host factor, referred to as CEM15, has been identified (6), which turned out identical to Apobec-3G (7). Expression of CEM15/Apobec-3G in permissive cells could give non-permissive phenotype, suggesting that this protein is essential and sufficient for non-permissive phenotype in these cells (6). CEM15/Apobec-3G is homologous to an RNA editing enzyme, Apobec-1, and belongs to the Apobec superfamily, which shares a cytidine deaminase motif and consists of Apobec-1 (810), AID (11, 12), Apobec-2 (13), and Apobec-3 (7, 14). This sequence similarity leads us to ask whether CEM15/Apobec-3G acts as an RNA editing enzyme to regulate the virion infectivity, although it has not been demonstrated to have any RNA editing activity. On the other hand, CEM15/Apobec-3G has been shown to act as a DNA mutator (14). In fact, several recent studies have revealed that CEM15/Apobec-3G deaminates dC to dU in the newly synthesized minus strand DNA of HIV-1, resulting in G to A hypermutation of the viral plus strand DNA (1517). However, precise mechanisms how exactly the enzymatic activity of CEM15/Apobec-3G regulates the virion infectivity and how Vif protein overcomes the function of this protein remain unclear. Since point mutations in essential amino acids in a cytidine deaminase motif of Apobec-1 abolished a cytidine deaminase activity as well as RNA editing activity (1820), we have examined the involvement of the enzymatic activity of CEM15/Apobec-3G in the regulation of the virion infectivity of HIV-1 using site-directed mutagenesis.
| MATERIALS AND METHODS |
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vif-Luc was constructed as described previously (2).
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Cell LinesHEK293T cells were maintained in Dulbecco's modified Eagle's medium (Invitrogen) containing 10% fetal calf serum and penicillin, streptomycin, and glutamine (Invitrogen). M8166 cells were maintained in RPMI 1640 (Sigma) containing 10% fetal calf serum and penicillin, streptomycin, and glutamine.
Infectivity AssayLuciferase reporter viruses with or without Vif were prepared in HEK293T cells by cotransfection of pNL43-Luc or pNL43/
vif-Luc together with a mock-vector or expression vectors for CEM15/Apobec-3G or its mutants by the calcium phosphate method. Viruses in the supernatants were collected after 48 h of transfection and virus titers were measured with an enzyme-linked immunosorbent assay kit for the p24 antigen (RETRO-TEK, ZeptoMetrix Corporation, Buffalo, NY). An adjusted amount of viruses was challenged to target cells, M8166. On day 2 postinfection, the cells were lysed in passive lysis buffer (Promega, Madison, WI), and the luciferase activity was measured with a Luminometer (EG&G Berthold, Bad Wildbad, Germany). Values were presented as percent infectivity relative to the value of wild type virus without expression of CEM15/Apobec-3G.
Coimmunoprecipitation AssayTo see protein-protein interaction in vivo, we performed an immunoprecipitation assay as described previously (23). In brief, an expression vector for His-CEM15 was cotransfected with EGFP-CEM15 and various mutants into HEK293T cells by calcium phosphate method. Two days after transfection, cells were lysed with lysing buffer. Cell lyates were immunoprecipitated with anti-EGFP monoclonal antibodies (mAbs) (kindly provided by Dr. A. Imura, Kyoto University) and protein G-SepharoseTM beads and subjected to immunoblotting with anti-His tag Ab (Babco, Berkeley, CA). His-CEM15 was visualized by ECL detection system (Amersham Biosciences).
Detection of Hypermutation in the Viral DNAHypermutation of HIV-1 DNA was detected using endogenous reverse transcription as described previously (24). In brief, after treated with DNase I, viral stocks were incubated at 39 °C for 120 min. DNA was purified and amplified using the following primer pairs: op-6.4 (CCATGCTCCTTGGGATATTG) and op-29.10 (CCTCCTGAGGATTGCTTAAA). The PCR products were cloned into pT7-Blue (Novagen, Madison, WI), and the inserts of individual clones were sequenced.
| RESULTS |
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vif-Luc (
vif) into HEK293T cells, prepared viruses, and tested the infectivity. As shown in Fig. 1, transient expression of His-CEM15 or EGFP-CEM15 clearly suppressed the infectivity of
vif virions in a dose-dependent manner as reported previously (6). This indicated that His- and EGFP-tagged protein could suppress the infectivity of
vif virions and that expression of CEM15/apobec-3G was sufficient to give non-permissive phenotype to HEK293T cells. Interestingly, the infectivity of WT virions was also suppressed by CEM15/Apobec-3G in a dose-dependent manner to a lesser extent.
Site-directed Mutagenesis of CEM15/Apobec-3GCEM15/Apobec-3G has sequence similarity with Apobec-1 that shares a conserved active site motif, designated as H-X-E-(X)2430-P-C-X-X-C, in which a histidine and two cysteines coordinate Zn2+ and a glutamate serves as a proton donor in the deamination reaction (Fig. 2A). Replacement of any of these four amino acids results in a catalytic mutant with the complete loss of its cytidine deaminase activity (1820). Since CEM15/apobec-3G protein has two conserved active sites, we generated a series of point mutants as shown in Fig. 2A to determine whether the enzymatic activity is necessary for the regulation of the virion infectivity and which active site is involved in this antiviral function. First, we tested the antiviral function of His-tagged H257R. An H257R mutant did not suppress the infectivity of HIV-1 virions. However, expression level of this mutant was quite lower (about 1/10) than that of the wild type (data not shown). Because we also experienced poor expression of some mutants as His-tagged proteins, we instead generated these mutants as EGFP fusion proteins and obtained similar levels of expression of all the mutants (data not shown). We then examined the antiviral function of these mutants. As shown in Fig. 2B, E259Q and C291A mutants lost the suppressive effect on the infectivity of
vif virions entirely, while E67Q and C100A mutants showed the similar, but slightly reduced, antiviral effect as compared with the wild type. This indicates that the enzymatic activity of the C-terminal active site containing Glu259 and Cys291 is necessary for the antiviral function, while that of the N-terminal active site containing Glu67 and Cys100 dispensable, suggesting two possibilities as follows. One is that the N-terminal active site does not possess the catalytic activity itself. Another is that the activity of this site is dispensable for the antiviral function, although it possesses the enzymatic activity.
The DNA Editing Activities of E67Q and E259Q Mutants Were Both Retained but Impaired to the Same ExtentTo address the above issue, we next examined the occurrence of hypermutation in the viral DNA induced by expression of these mutants, since recent reports showed that expression of CEM15/Apobec-3G introduced G to A hypermutation in the viral DNA in the absence of Vif protein (1517). As shown in Fig. 3, the wild type CEM15/Apobec-3G clearly introduced G to A hypermutation in the viral DNA (Fig. 3A), but vector alone did not (data not shown), as described previously (15, 16). Surprisingly, this assay revealed that each of E67Q and E259Q mutants still retained the activity to introduce some mutations in the viral DNA, but the frequency of mutations was much lower than that of the wild type. (Fig. 3, B and C). These results suggest that both mutants retained some residual enzymatic activity; however, this residual enzymatic activity did not reflect the antiviral activity of these mutants. Interestingly, CEM15/Apobec-3G could introduce G to A mutations even in the viral DNA of WT virus to a lesser extent corresponding to the virion infectivity (Figs. 1 and 3D).
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Deletion Mutants Lost Their Activity Due to the Loss of the Activity for DimerizationWe further generated a series of deletion mutants as shown in Fig. 4A to examine the possibility whether the C-terminal active site alone is enough for the antiviral function. However, as shown in Fig. 4B, all the deletion mutants lost the antiviral effect on
vif virions as well as WT virions. Most of the known cytidine deaminases act as homodimers or homotetramers (25, 26), and deletion mutants of apobec-1 have lost their RNA editing actitvity due to the loss of dimerization activity (26). Hence, we suspected that deletion mutants had lost the antiviral activity because these might not form the homodimers. To test this possibility, we performed an immunoprecipitation assay to examine the protein-protein interaction between His-CEM15 and EGFP-mutants. As shown in Fig. 4C, EGFP-CEM15 (wild type) and EGFP point mutants coimmunoprecipitated His-CEM15 (lanes 2 and 79, respectively), but EGFP deletion mutants did not (lanes 46). This suggests that the deletion of this protein interfered the proteinprotein interaction between CEM15/Apobec-3G molecules but point mutation did not. Taken together, the entire protein structure of CEM15/Apobec-3G might be necessary for the antiviral activity and the loss of the ability for dimerization by deletion might lead to the loss of this function as reported with Apobec-1.
| DISCUSSION |
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vif virion. Mangeat et al. (16) reported that point mutants such as E67Q, C100S, E259Q, and C291S showed the similarly impaired antiviral activity on
vif virion. Both reports showed that point mutants in any of four critical amino acid residues of either active site lost their antiviral activities. However, we clearly demonstrated that the C-terminal active site is more potent for its antiviral activity, while the N-terminal active site is dispensable for this function. We also clearly demonstrated that point mutants in either active site still retained the DNA editing activity but impaired as compared with that of the wild type. These residual DNA editing activities of E67Q and E259Q mutants were similar, although an E67Q mutant was more potent than an E259Q mutant for its antiviral activity. These results suggest that both active sites possess the DNA editing activity and that the destruction of either active site by point mutation diminished, but still retained the DNA editing activity, which might originate from the other active site. Furthermore, each active site has a different potency to suppress the virion infectivity. We have considered several reasons for this discrepancy between our data and others. One major possibility is that our all mutants have N-terminal tags, while both reports by Zhang and Mangeat (15, 16) used C-terminal FLAG and hemagglutinin tag, respectively. The addition of C-terminal FLAG or hemagglutinin tag might abrogate the residual antiviral activity of point mutants in the N-terminal active site, or the addition of tag on the N terminus facilitates the antiviral effect of mutants in the N-terminal active site. The second possibility is that it was due to the discrepancy between the types of mutants we made (H257R, E67Q, E259Q, C100A, and C291A) and those they made (C97A/C100A, H257A, C288A/C291A, E67Q, C100S, E259Q, and C291S). C97A/C100A and C100S mutations might completely abolish the DNA editing activity. Deletion mutant study revealed that the entire protein structure is necessary for the function of CEM15/Apobec-3G. Previous studies on Apobec-1 demonstrated that deletion of even 10 amino acids at N terminus or 5 amino acid at C terminus diminished not only RNA-editing activity but also RNA binding activity and the ability for homodimerization, suggesting that homodimerization of Apobec-1 is necessary for its catalytic activity. In our study, deletion of even 20 amino acids at the N terminus or 99 amino acids at the C terminus abolished the antiviral activity as well as the ability for dimerization. This suggests that the loss of the ability for homodimerization leads to the loss of the antiviral function as in the case with Apobec-1.
Interestingly, CEM15/Apobec-3G also suppressed the infectivity of wild type virus to a lesser extent, which was also abolished in catalytic mutants. We have also shown that CEM15/Apobec-3G induced G to A mutations in the viral DNA of wild type HIV-1 (with Vif). These data suggest that CEM15/Apobec-3G acts on wild type virus to a lesser extent, even in the presence of Vif protein. This finding is compatible with that reported by Zhang et al. (15), in which the viral DNA of the wild type HIV-1 had hypermutations after several passages in non-permissive cells. If so, it remains unclear how wild type virus survives and evolves in vivo in primary T cells expressing CEM15/Apobec-3G.
Finally, our present study clearly showed that the enzymatic activity of CEM15/Apobec-3G is essential but not a sole determinant of its antiviral function. However, it still remains unclear how HIV-1 Vif protein counteracts and inhibits the function of CEM15/Apobec-3G to make infectious viruses from non-permissive cells. To elucidate this mechanism could give us deeper insights in the regulation of the virion infectivity by Vif protein and lead us to develop a novel therapeutic strategy for HIV-1 infection.
| FOOTNOTES |
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To whom correspondence should be addressed: Dept. of Hematology and Oncology, Graduate School of Medicine, Kyoto University, 54 Shogoin-Kawaracho, Sakyo-ku, Kyoto 606-8507, Japan. Tel.: 81-75-751-3152; Fax: 81-75-751-4963; E-mail: atakaori{at}kuhp.kyoto-u.ac.jp.
1 The abbreviations used are: EGFP, enhanced green fluorescent protein; HIV-1, human immunodeficiency virus, type 1; mAb, monoclonal antibody; Ab, antibody; WT, wild type. ![]()
| ACKNOWLEDGMENTS |
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