Originally published In Press as doi:10.1074/jbc.M400158200 on January 30, 2004
J. Biol. Chem., Vol. 279, Issue 16, 15888-15896, April 16, 2004
Importance of Transmembrane Segment M1 of the Sarcoplasmic Reticulum Ca2+-ATPase in Ca2+ Occlusion and Phosphoenzyme Processing*
Anja Pernille Einholm,
Bente Vilsen, and
Jens Peter Andersen
From the
Institute of Physiology, University of Aarhus, Ole Worms Allé 160, DK-8000 Aarhus C, Denmark
Received for publication, January 7, 2004
, and in revised form, January 27, 2004.
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ABSTRACT
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The functional consequences of a series of point mutations in transmembrane segment M1 of sarcoplasmic reticulum Ca2+-ATPase were analyzed in steady-state and transient kinetic experiments examining the partial reaction steps involved in Ca2+ interaction and phosphoenzyme turnover. Arginine or leucine substitution of Glu51, Glu55, or Glu58, located in the N-terminal third of M1, did not affect these functions. Arginine or leucine substitution of Asp59, located right at the bend of M1 seen in the crystal structure of the thapsigargin-bound form, caused a 10-fold increase of the rate of Ca2+ dissociation toward the cytoplasmic side. Mutation of Leu60 to alanine or proline and of Val62 to alanine also enhanced Ca2+ dissociation, whereas an 11-fold reduction of the rate of Ca2+ dissociation was observed upon alanine substitution of Leu65, thus providing evidence for a relation of the middle part of M1 to a gating mechanism controlling the dissociation of occluded Ca2+ from its membranous binding sites. Moreover, phosphoenzyme processing was affected by some of the latter mutations, in particular leucine substitution of Asp59, and alanine substitution of Leu65 accelerated the transition to ADP-insensitive phosphoenzyme and blocked its dephosphorylation, thus demonstrating that this part of M1, besides being important in Ca2+ interaction, furthermore, is a critical element in the long range signaling between the transmembrane domain and the cytoplasmic catalytic site.
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INTRODUCTION
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The Ca2+-ATPase1 of sarcoplasmic reticulum is a membrane-bound enzyme that pumps Ca2+ from the cytosol to the lumen of the sarcoplasmic reticulum at the expense of chemical energy being released by ATP hydrolysis (14). It belongs to the family of P-type ATPases characterized by the formation during the enzymatic cycle of a phosphorylated enzyme intermediate, in which the
-phosphoryl group of ATP has been transferred to a conserved aspartic acid side chain in the enzyme. The phosphoenzyme intermediate is fundamental to the coupling between the spatially well separated processes of ATP hydrolysis in the cytoplasmic part of the molecule and vectorial ion transport across the membrane. Phosphorylation of the enzyme by ATP is activated by Ca2+ binding at cytoplasmically facing high affinity sites of the E1 form. During the subsequent conformational change, [Ca2]E1P
Ca2E2P, the Ca2+ binding sites are reoriented toward the lumen and their affinity markedly lowered, resulting in release of the bound ions (Scheme 1). It is believed that, following their binding at the high affinity sites, the Ca2+ ions are contained within an "occluded" state (here indicated by brackets around the Ca2+ ions) with no access to the medium on either side of the membrane (57).

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SCHEME 1. Ca2+-ATPase reaction cycle. Simplified scheme illustrating the partial reactions of the Ca2+-ATPase reaction cycle. Occluded Ca2+ ions are shown in brackets.
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The overall tertiary structure of the Ca2+-ATPase comprises 10 transmembrane
-helices (M1M10) and a large cytoplasmic headpiece divided into three distinct subdomains denoted "actuator" (A), "nucleotide-binding" (N), and "phosphorylation" (P) domain (8, 9). The two Ca2+ binding sites, located in the membranous part of the molecule more than 40 Å away from the cytoplasmic catalytic site, are formed by amino acid residues in transmembrane segments M4 (Val304, Ala305, Ile307, and Glu309), M5 (Asn768 and Glu771), M6 (Asn796, Thr799, and Asp800), and M8 (Glu908) (8, 1012). Although the nature of the intramolecular signaling between the distantly located catalytic site and the Ca2+ binding sites in the membrane is yet incompletely understood, the propagation of conformational changes seems to be part of this long range communication. The crystal structure has been determined for two forms of the Ca2+-ATPase, a Ca2+-bound form presumably corresponding to [Ca2]E1 (8) and a Ca2+-free form with thapsigargin bound, believed to resemble E2 ("E2-Tg") (9). Comparison of the two structures reveals major conformational differences. In particular, the A-, N-, and P-domains move from a spatially well separated organization in the Ca2+-bound form to a more compact entity in E2-Tg (9). Interestingly, it appears that this rearrangement of the cytoplasmic domains is accompanied by a partial unfolding and bending (at Asp59) of the helical structure of transmembrane segment M1, to which the A-domain is physically connected through a flexible hinge. The bending may be aided by the amphipathic nature of the most N-terminal part of M1, allowing one side of the bent part to remain associated with membrane lipid while the other side comes into contact with the cytoplasmic phase (9). An important challenge is to reveal whether these rearrangements of the cytoplasmic domains and M1 are coupled and occur in the native state during the transport cycle and to understand the functional implications. Although it was recently reported that the length and, hence, the flexibility of the hinge linking M1 and the A-domain is critical to phosphoenzyme processing (i.e. Reactions 46 in Scheme 1) (13), the functional importance of M1 has so far not been characterized in any detail. A most striking aspect of M1 of the SERCA family of Ca2+-ATPases is the presence of four negatively charged amino acid residues (Glu51, Glu55, Glu58, and Asp59), which have been suggested to provide the cytoplasmic entry pathway to the membranous Ca2+ sites (14). This proposal was mainly based on the crystal structure of the Ca2+-ATPase in the Ca2+-bound form (8), but, since then, the determination of the crystal structure of the Ca2+-ATPase in the E2-Tg form has attracted further attention to M1 by demonstrating that the above-described bending of M1 opens a water-accessible channel leading between M1 and M3 to Glu309 at Ca2+ site II, a channel with the potential of a Ca2+ entry port (9). Of Glu51, Glu55, Glu58, and Asp59 in M1, the first three contribute to define the polar/charged surface of the amphipathic part near its N terminus, whereas Asp59 is located right at the bend formed in the E2 form. Furthermore, in the Ca2+-bound crystal structure, Glu58 appears to be hydrogen-bonded to Glu309 at Ca2+ binding site II, making a direct conformational effect on M1 possible upon Ca2+ occupancy of the binding sites (14).
With respect to the specific Ca2+ selectivity of the Ca2+-ATPase, it is interesting to note that the negatively charged M1 residues Glu55 and Glu58 are replaced by residues with positively charged side chains in the Na+, K+-ATPase. Because transmembrane segment M3 of both ATPases contains additional negatively charged residues, which appear to be located rather close to M1 in the three-dimensional structure, the situation could be somewhat similar to voltage-gated Ca2+ and Na+ channels, where the cation selectivity filter is formed by four negatively charged side chains in the former and two negative plus one positive side chain in the latter (15, 16). Thus, the above-mentioned charged residues within the cytoplasmic part of M1 of the Ca2+-ATPase could possibly contribute to a Ca2+ selectivity filter.
These considerations on the possible function of M1 of the Ca2+-ATPase in Ca2+ migration and in long range signal transmission have prompted a detailed study of the structural and functional aspects of M1. To test the above-mentioned hypothesis about Glu51, Glu55, Glu58, and Asp59 as part of a possible Ca2+ entry pathway and/or selectivity filter, we have mutated these amino acids individually to the neutral leucine and to the oppositely charged and rather bulky arginine, which would be expected to impose electrostatic and steric effects on Ca2+ migration, if positioned near the migration pathway. Moreover, we have substituted the hydrophobic amino acids Phe57, Leu60, Val62, and Leu65 to investigate the demands for bulkiness and hydrophobicity of these side chains. Phe57 is located on the hydrophobic surface of the bent part of M1 in the E2-Tg structure and could be instrumental in attaching this part to the lipid bilayer. The other hydrophobic residues are embedded in the membrane, Leu65 below the level of the Ca2+ ions in the Ca2+-bound structure. The effects of these mutations on the various partial reaction steps involved in Ca2+ binding and catalysis have been analyzed, using among other assays also transient kinetic methods that allow measurement of the rates of conformational changes and Ca2+ dissociation toward the cytoplasmic side.
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EXPERIMENTAL PROCEDURES
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Site-directed Mutagenesis and ExpressionThe QuikChange site-directed mutagenesis kit (Stratagene) was used to introduce the desired mutations directly into full-length cDNA encoding the rabbit fast twitch muscle Ca2+-ATPase (SERCA1a isoform). The template in the mutagenesis reaction consisted of SERCA1a cDNA inserted into the expression vector pMT2 (17). For expression of recombinant protein, pMT2 containing wild-type or mutant cDNA was transfected into mammalian COS-1 cells using the calcium phosphate precipitation method (18). The microsomal fraction containing expressed wild-type or mutant Ca2+-ATPase was isolated by differential centrifugation (19), and the expression level was quantitated by a specific enzyme-linked immunosorbent assay (20).
Functional StudiesThe ability of wild-type or mutant Ca2+-ATPase to transport Ca2+ and hydrolyze ATP was determined by studying the 45Ca2+ uptake into microsomal membranes and the Pi liberation, respectively (21). The molecular turnover rate was calculated as the ratio between the specific Ca2+-ATPase activity and the active-site concentration. The latter was determined by quantitation of phosphorylation from [
-32P]ATP at 0 °C in the presence of a saturating Ca2+ concentration. Samples of wild-type and mutant Ca2+-ATPase were examined in parallel, and the molecular turnover rate corresponding to the mutants was expressed relative to that of the wild type. Partial reactions were studied according to previously described principles (2023), taking advantage of the acid stability of the phosphoenzyme formed from [
-32P]ATP or 32Pi, and details are given in the figure legends. A BioLogic quenched flow module QFM-5 or SFM-400/Q (Bio-Logic Science Instruments, Claix, France) was used for rapid mixing in experiments where the reaction time was below 1 s, applying the previously described protocols (22, 23). In all phosphorylation experiments, the reaction was quenched by addition of 0.52 volumes of 25% (w/v) trichloroacetic acid containing 100 mM H3PO4. Subsequently, the acid-precipitated enzyme was washed by centrifugation, dissolved in loading buffer and subjected to separation by SDS-PAGE at pH 6.0 (24). The distribution of radioactivity associated with the gel was quantitated by electronic autoradiography of the dried gel using a Packard CycloneTM Storage Phosphor System.
Data AnalysisUsing the Sigmaplot program (SPSS Inc.), time courses of phosphorylation and dephosphorylation were fitted according to first-order kinetics, whereas ligand concentration dependences were fitted by use of the Hill equation. Generally, the experiments were performed at least twice on different enzyme preparations, and average values are shown in the figures. Standard errors are shown in the tables except for a few cases, in which the experiment (giving a wild type-like result) was performed only once.
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RESULTS
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Site-directed Mutagenesis and ExpressionSeveral Ca2+-ATPase point mutants were designed to study the functional importance of transmembrane segment M1. An overview of these mutations is given in Table I. Two different strategies were used: (i) charge reversal or removal (Glu51, Glu55, Glu58, and Asp59) and (ii) hydrophobic size reduction (Phe57, Leu60, Val62, and Leu65). The carboxylic acid residues were replaced by the positively charged and rather bulky arginine and with leucine, removing the negative charge. Phe57, Leu60, Val62, and Leu65 were replaced by the smaller hydrophobic alanine to test the importance of the bulkiness of these side chains. In addition, Phe57 was replaced by the more polar glutamine, and Leu60 by proline. The expression level of all these Ca2+-ATPase constructs in COS cells was rather similar to that of the wild type (data not shown).
Effect on Overall ReactionTo characterize the effect of the M1 mutations on the overall function of the Ca2+-ATPase, the ability to hydrolyze ATP was determined at 37 °C in the presence and absence of the calcium ionophore A23187
[GenBank]
. Data obtained in the presence of ionophore are shown in Table I. Mutant Leu65
Ala displayed the most pronounced reduction of maximal ATPase activity (to 3% of wild type). The maximal ATPase activity of Asp59
Leu was reduced to 18%. In contrast, the maximal ATPase activity was increased in Val62
Ala relative to wild type (by 30%). Upon addition of the calcium ionophore, passive efflux of Ca2+ from the vesicles is facilitated, thereby relieving "back inhibition" caused by accumulation of a high concentration of Ca2+ inside the vesicles (21). In the absence of calcium ionophore, the ATPase activity of wild type and all mutants except Leu65
Ala was 2- to 3-fold lower than in its presence (data not shown), indicating that the ability to pump Ca2+ and the luminal sensitivity to Ca2+ were preserved. In accordance with this conclusion, direct measurement of ATP-dependent 45Ca2+ transport at 37 °C in the presence of oxalate to trap Ca2+ in the lumen of the microsomal vesicles demonstrated transport activity in all mutants except Leu65
Ala (Table I). The mutational effects on ATP hydrolysis and Ca2+ transport are not sufficiently different to signify any change in the coupling between the catalytic site in the cytoplasmic domain and the Ca2+ binding sites in the transmembrane part of the molecule. Although the 30% increase of ATPase activity seen for Val62
Ala is not accompanied by an increase of the Ca2+ transport rate, this relatively minor difference may well be accounted for by the higher Ca2+ concentration present in the vesicles during the Ca2+ transport assay, which through Ca2+ binding at the luminal sites slows the turnover of the phosphoenzyme, thereby tending to mask any accelerating mutational effect. Having established the impact of the various mutations in M1 on the overall functional performance of the Ca2+-ATPase, we proceeded with a more detailed analysis of the partial reactions of the enzyme cycle.
Ca2+ Dependence of Phosphorylation from [
-32P]ATPThe Ca2+-mediated activation of phosphorylation from ATP requires the binding of both calcium ions at the high affinity cytoplasmically facing sites (cf. Reactions 2 and 3 in Scheme 1). Examination of the mutational effect on Ca2+ titration of phosphorylation therefore provides information about the Ca2+-binding properties. The Ca2+ dependence of steady-state phosphorylation was studied at 0 °C, where phosphoenzyme accumulation is favored. Fig. 1 shows the titration curves for some of the mutants, and Table I summarizes the data for all mutants. Substitution of Glu51, Glu55, or Glu58 by either leucine or arginine had no significant effect on the apparent Ca2+ affinity, as exemplified by Glu58
Arg in Fig. 1 (cf. Fig. 1 and Table I). In contrast, arginine substitution of Asp59 caused a 5-fold reduction of apparent Ca2+ affinity (increase of K0.5) compared with wild type, whereas the apparent affinity for Ca2+ was unaffected by leucine or alanine substitution of this residue. These results are in accordance with a previous study in which the Ca2+ dependence of Ca2+ transport was found normal in a cluster mutant with alanine substitutions of Glu55, Gln56, Glu58, and Asp59 (25). The mutants Phe57
Ala, Leu60
Ala/Pro, and Val62
Ala, with alterations to hydrophobic residues, displayed moderate reductions of apparent Ca2+ affinity (1.5- to 3-fold increase of K0.5). On the contrary, Leu65
Ala displayed higher affinity for Ca2+ than wild type, the K0.5 being reduced to 61% of the corresponding value for the wild type (Fig. 1 and Table I).
Rate of Ca2+ Dissociation toward the Cytoplasmic SideTo determine more directly the effects of the mutations on Ca2+ binding, we examined the rate of Ca2+ dissociation toward the cytoplasmic side from the [Ca2]E1 form at pH 6.0, 25 °C (Fig. 2), using a previously described quenched flow technique (23). Mutant or wild-type enzyme pre-equilibrated with saturating amounts of Ca2+ was treated with an excess of the Ca2+ chelator EGTA for various time intervals prior to a 34-ms incubation with [
-32P]ATP testing the ability to phosphorylate. Because occupancy of the Ca2+ binding sites is required to render the enzyme phosphorylatable from ATP, the time course of disappearance of the ability to phosphorylate reflects the dissociation of Ca2+. Because the enzyme is not phosphorylated at the time when Ca2+ dissociates, the dissociation must occur toward the cytoplasmic side of the membrane. It is believed that the ability to phosphorylate disappears with the dissociation of the first Ca2+ ion in a sequential mechanism (26). Fig. 2 shows such time courses for some of the mutants, and Table I summarizes the results for all mutants in terms of the half-life of the Ca2+-bound enzyme form capable of undergoing phosphorylation. The half-lives corresponding to mutants Glu51
Arg/Leu, Glu55
Arg/Leu, Glu58
Arg/Leu, and Asp59
Ala were indistinguishable from that of the wild type, whereas a decrease of around 10-fold was determined for Asp59
Arg/Leu, corresponding to a 10-fold higher rate of Ca2+ dissociation (Fig. 2 and Table I). Furthermore, the Ca2+ dissociation kinetics was quite sensitive to the size of the hydrophobic side chains in the middle part of M1. Hence, Leu60
Ala/Pro and Val62
Ala displayed markedly reduced half-lives relative to wild type, i.e. corresponding to a 2- to 3-fold increase of the Ca2+ dissociation rate. Most conspicuously, alanine substitution of Leu65 resulted in an 11-fold increase of the half-life (reduction of the rate of Ca2+ dissociation). Mutation of Phe57 (to glutamine or alanine) did not affect the Ca2+ dissociation rate to any significant extent (Fig. 2 and Table I).

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FIG. 2. Time course of Ca2+ dissociation toward the cytoplasmic side determined by loss of ability to phosphorylate. The kinetics of Ca2+ dissociation toward the cytoplasmic side was monitored at 25 °C by the loss of ability to undergo phosphorylation from [ -32P]ATP, using a Bio-Logic quenched flow module SFM-400/Q and the previously described mixing protocol (23). Wild-type or mutant Ca2+-ATPase preincubated in 40 mM MES/Tris (pH 6.0), 80 mM KCl, 5 mM MgCl2, and 100 µM CaCl2 was mixed with an equal volume of 40 mM MES/Tris (pH 6.0), 80 mM KCl, 5 mM MgCl2, and 4 mM EGTA, followed by the addition of the double volume of 40 mM MES/Tris (pH 6.0), 80 mM KCl, 5 mM MgCl2, 2 mM EGTA, and 10 µM [ -32P]ATP at the times indicated on the abscissa, and acid quenching 34 ms later. A mono- or bi-exponential function was fitted to the data and the half-life (t0.5) determined. The (relative) t0.5 values are listed in Table I together with the corresponding values for other mutants obtained in the same way.
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Time Course of the E2
[Ca2]E1P TransitionTo further examine the Ca2+ binding properties of the mutants, the E2
[Ca2]E1P transition, consisting of Reactions 13 in Scheme 1, was studied by determining the rate of phosphoenzyme formation following simultaneous addition of Ca2+ and [
-32P]ATP to enzyme initially present in the Ca2+-deprived E2 form at pH 6.0, 25 °C. Under these conditions, the E2
[Ca2]E1 transition is rate-limiting for the phosphorylation, as the reaction with ATP (Reaction 3 in Scheme 1) is much faster (cf. Refs. 22 and 27, also confirmed for the mutants studied here, data not shown). Fig. 3 shows the time course for the wild type and Asp59
Arg, and Table I summarizes the results for all mutants in terms of the rate constants obtained by fitting a monoexponential function to the data. For Asp59
Arg, the observed rate constant was 1.8-fold higher than that corresponding to wild type, suggesting an enhanced rate of the E2
[Ca2]E1 transition. For the other mutants the data were indistinguishable from wild type.

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FIG. 3. Time course of phosphorylation of Asp59 Arg and wild type following addition of [ -32P]ATP and Ca2+ to Ca2+-deprived enzyme in E2 form. Rapid kinetic measurements at 25 °C were performed using Bio-Logic quenched flow module QFM-5 or SFM-400/Q according to previously described mixing protocols (22). Wild-type or mutant enzyme preincubated in 40 mM MES/Tris (pH 6.0), 80 mM KCl, and 2 mM EGTA, was mixed with an equal volume of 40 mM MES/Tris (pH 6.0), 80 mM KCl, 10 mM MgCl2, 2.2 mM CaCl2, and 10 µM [ -32P]ATP, followed by acid quenching at the indicted times. A monoexponential function was fitted to the data, and the results were normalized separately for wild type and mutant, taking the phosphorylation corresponding to infinite time as 100%. The (relative) rate constant is shown in Table I together with the corresponding values for other mutants obtained in the same way.
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Vanadate Dependence of Inhibition of Phosphorylation from [
-32P]ATPVanadate (
), acting as an analogue of the phosphoryl group in the transition state during dephosphorylation, binds preferentially to the E2 form (28, 29). Hence, the apparent affinity for vanadate can be used to quantify mutational effects on the equilibrium between E2 and E1 conformations, provided that the intrinsic affinity of the E2 form for vanadate is not affected by the mutations. We have previously devised an assay in which the enzyme is equilibrated with various concentrations of vanadate at 25 °C in the absence of Ca2+ and ATP, followed by determination of the amount of phosphoenzyme formed upon the addition of Ca2+ and [
-32P]ATP at 0 °C (23, 30). Because vanadate binding and phosphorylation are competitive, and vanadate dissociation is very slow at 0 °C, the amount of phosphoenzyme formed from ATP under these conditions reflects the proportion of enzyme present in the vanadate-free form before the addition of Ca2+ and ATP. Using this assay, the apparent affinity constants for vanadate were determined for mutants with altered Ca2+ binding characteristics and for the Phe57 mutants, and are listed in Table II. The titration data are shown in Fig. 4 for wild type and Asp59
Arg, which displayed a strikingly reduced apparent vanadate affinity compared with that of the wild type. This is consistent with a displacement of the E2-E1 equilibrium in favor of E1 and suggests that the above-described enhancement of the E2
[Ca2]E1 transition rate in Asp59
Arg is caused by an enhanced rate of the E2
E1 conformational change of Ca2+-free enzyme (Reaction 1 in Scheme 1). Among the other mutants, Leu60
Ala and Val62
Ala showed a slight (2-fold) increase in vanadate affinity, suggesting that there could be a displacement of the E2-E1 equilibrium in favor of E2.

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FIG. 4. Vanadate inhibition of phosphorylation of Asp59 Arg and wild type from [ -32P]ATP. Prior to phosphorylation, microsomal preparations were sequentially incubated for 1 h at 25 °C and 15 min at 0 °C in 40 mM MOPS/Tris (pH 7.0), 80 mM KCl, 5 mM MgCl2, 2 mM EGTA, and the indicated concentration of . CaCl2 (2.5 mM) was then added, and immediately after 5 µM [ -32P]ATP, to phosphorylate the vanadate-free fraction of the enzyme, followed by acid quenching 15 s later. The Hill equation for inhibition, was fitted to the data, and the results were normalized separately for wild type and mutant, taking EPmax as 100%. The (relative) K0.5 value is shown in Table II together with the corresponding values for other mutants obtained in the same way.
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Time Course of Dephosphorylation of Phosphoenzyme Formed from [
-32P]ATPTo study the effects of the mutations on the processing of the phosphoenzyme, we first followed the decay of phosphoenzyme formed from [
-32P]ATP at pH 7.0, 0 °C, presence of K+, i.e. conditions where it is well recognized that the [Ca2]E1P
Ca2E2P transition (cf. Reaction 4 in Scheme 1) is the major rate-limiting step during phosphoenzyme turnover of the wild-type enzyme (31, 32). To observe the dephosphorylation, phosphorylation from [
-32P]ATP was terminated by simultaneous addition of EGTA and excess non-labeled ATP. Fig. 5 shows the phosphoenzyme decay for some of the mutants, and Table II summarizes the results for all mutants in terms of the rate constants obtained by fitting a monoexponential decay function to the data. The rate of disappearance of phosphoenzyme was wild type-like in mutants Glu51
Arg/Leu, Glu55
Arg/Leu, and Glu58
Arg/Leu, as well as Asp59
Arg. In contrast, a reduction of the rate of phosphoenzyme decay to only 17% was seen for Asp59
Leu, whereas alanine substitution of this residue resulted in a much smaller decrease (to 68%). Among the mutants with alteration to hydrophobic residues, the most pronounced reduction of the rate of dephosphorylation (to 9%) was observed for Leu65
Ala, whereas Leu60
Ala and Val62
Ala were slightly affected in the opposite direction (1.7-fold increase). To distinguish between effects on Reactions 46 in Scheme 1, we determined the ADP sensitivity of the phosphoenzyme intermediate accumulated after phosphorylation with [
-32P]ATP, i.e. its ability to react with ADP and donate the phosphoryl group back to ADP, forming ATP. Only [Ca2]E1P is able to undergo this reaction. Following phosphorylation of wild-type and mutant Ca2+-ATPase under conditions identical to those described for Fig. 5, 1 mM ADP was added and allowed to react for 5 s. For the wild type, only about 1% of the original amount of phosphoenzyme remained after this incubation, thus demonstrating the accumulation of the [Ca2]E1P form. For Asp59
Leu and Leu65
Ala, as much as 72 and 82% of the phosphoenzyme remained after treatment with ADP for 5 s, respectively (Table II), indicating accumulation of ADP-insensitive E2P phosphoenzyme occurred (or possibly Ca2E2P, which is thought to be rather unstable in the wild type, but might be stabilized by mutation). For all the other mutants, the ADP sensitivity was wild type-like, indicating that [Ca2]E1P accumulated, and in these cases the dephosphorylation rate observed in the experiments corresponding to Fig. 5 reflects the [Ca2]E1P
Ca2E2P transition. The anomalous accumulation of ADP-insensitive phosphoenzyme seen for Asp59
Leu and Leu65
Ala upon phosphorylation with ATP could in principle result from an enhanced rate of the [Ca2]E1P
Ca2E2P transition (Reaction 4 in Scheme 1) or from a reduced rate of the subsequent steps (Reactions 5 and 6 in Scheme 1). The reduced rate of phosphoenzyme decay observed for these mutants in Fig. 5 suggests the latter possibility. To clarify this issue further, we measured directly the dephosphorylation of the E2P form (Figs. 6 and 7), as well as the rate of accumulation of ADP-insensitive phosphoenzyme upon phosphorylation with ATP (Fig. 8 and Table II).

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FIG. 6. Time course of dephosphorylation of E2P phosphoenzyme at pH 6.0. Phosphorylation was carried out at 25 P °C for 10 min in 100 mM MES/Tris (pH 6.0), 10 mM MgCl, 2 mM EGTA, 30% (v/v) Me2SO, and 0.5 mM 32Pi. Subsequently, the phosphoenzyme was chased by a 19-fold dilution of an aliquot into a medium (kept at 25 °C) containing 100 mM MES/Tris (pH 6.0), 2 mM EGTA, 10 mM EDTA, 15% Me2SO, and 0.5 mM non-radioactive Pi, and acid quenching was performed at the indicated time intervals. A monoexponential decay function was fitted to the data, and the maximal phosphorylation was taken as 100%. Each mutant is shown together with wild-type data obtained in the same series of experiments, and the (relative) rate constants are listed in Table II together with the corresponding values for other mutants obtained in the same way.
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FIG. 7. Time course of dephosphorylation of E P phosphoenzyme at pH 7.0. Experiments were conducted and analyzed as described for Fig. 6, except that the chase medium was kept at 0 °C and contained 40 mM MOPS/Tris (pH 7.0), 5 mM MgCl2, 2 mM EGTA, 80 mM KCl, and 0.5 mM non-radioactive Pi.
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FIG. 8. Time course of accumulation of ADP-insensitive phosphoenzyme in Leu65 Ala and wild type. Phosphorylation was performed at 0 °C for the indicated time intervals in 40 mM TES/Tris (pH 8.0), 80 mM LiCl, 10 mM MgCl2, 50 µM CaCl2, 10 µM calcium ionophore A23187
[GenBank]
, and 5 µM [ -32P]ATP. At the indicated time intervals after initiation of phosphorylation, an equal volume of 40 mM TES/Tris (pH 8.0), 80 mM LiCl, 10 mM MgCl2, 10 mM EGTA, and 2 mM ADP was added to remove ADP-sensitive phosphoenzyme, followed by acid quenching 4 s later. A monoexponential function was fitted to the data, and the results were normalized separately for wild type and mutant, taking the phosphorylation corresponding to infinite time as 100%. The (relative) rate constant is shown in Table II together with the corresponding value for Asp59 Leu obtained in the same series of experiments.
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Phosphoenzyme Formed from 32PiUnder favorable conditions (absence of Ca2+, pH 6.0, 25 °C, presence of the organic solvent dimethyl sulfoxide, absence of alkali metal ions), it is possible to form the phosphoenzyme intermediate E2P by "backward" reaction of E2 with inorganic phosphate (cf. Reaction 6 in Scheme 1), even if the latter is present only at sub-millimolar concentration. The Pi concentration dependence of the amount of E2P formed this way showed characteristics similar to wild type for Glu51
Arg/Leu, Glu55
Arg/Leu, and Glu58
Arg/Leu (Table II). Arginine and leucine substitution of Asp59 affected K0.5 for Pi in opposite directions, the former causing a 6-fold increase and the latter a decrease relative to wild type. No significant difference was seen between Asp59
Ala and the wild type. A 2-fold increase of K0.5 for Pi was seen with Phe57
Gln/Ala and Val62
Ala, and in Leu60
Pro the K0.5 was 4-fold increased. Remarkably, the K0.5 was lowered around 3-fold (apparent Pi affinity increased) in Leu65
Ala.
The dephosphorylation kinetics of E2P phosphoenzyme (cf. Reaction 6 in Scheme 1), formed under the conditions just described, was studied for some of the mutants by a 19-fold dilution into a chase medium, which terminated the phosphorylation from 32Pi. Fig. 6 shows the time course of E2P dephosphorylation at 25 °C in medium containing 15% dimethyl sulfoxide at pH 6.0 in the absence of K+, i.e. conditions where this reaction is rather slow and, therefore, easy to follow, and which are rather similar to those under which the K0.5 values for Pi were obtained. The rate constants determined by fitting a monoexponential function are listed in Table II. The variation of the kobs for E2P dephosphorylation paralleled to a large extent the change in K0.5 for Pi. Hence, the variation of the K0.5 for Pi is largely due to the mutational effects on E2P dephosphorylation. In particular, an 8-fold increase of kobs was determined for Asp59
Arg, whereas Asp59
Leu showed a 4-fold decrease (Fig. 6). Leu60
Pro showed a 5-fold enhanced kobs, whereas Phe57
Gln/Ala, Leu60
Ala, and Val62
Ala showed minor changes relative to wild type (up to 2.3-fold). A most conspicuous, almost complete block of E2P dephosphorylation was seen for Leu65
Ala (Fig. 6 and Table II).
The markedly reduced kobs values for E2P dephosphorylation of Asp59
Leu and Leu65
Ala seem to explain perfectly well the accumulation of ADP-insensitive phosphoenzyme (E2P) observed for these mutants in the phosphorylation experiments with ATP described above. These experiments were, however, performed at pH 7.0, 0 °C, and in the presence of K+, whereas the results presented in Fig. 6 were obtained under conditions that deliberately slowed the dephosphorylation of E2P. This led us to study the dephosphorylation of E2P further for selected mutants at pH 7.0, 0 °C, presence of K+, and the results are seen in Fig. 7 and Table II. Clearly, the dephosphorylation of E2P was found markedly inhibited in Asp59
Leu and Leu65
Ala also under these conditions (
10- and 33-fold, respectively, relative to wild type).
Time Course of the [Ca2]E1P
Ca2E2P TransitionBecause the data in Fig. 7 show that E2P
E2 is the major rate-limiting step in the dephosphorylation of mutants Asp59
Leu and Leu65
Ala, even at pH 7.0, 0 °C, presence of K+, the results in Fig. 5 do not provide information about the rate of the [Ca2]E1P
Ca2E2P transition (cf. Reaction 4, Scheme 1) in these mutants. Such information was instead obtained using an experimental design that takes advantage of the ADP-sensitivity of [Ca2]E1P. The enzyme was phosphorylated with [
-32P]ATP under conditions known to slow down dephosphorylation of E2P, such that E2P accumulates even in the wild type (0 °C, pH 8.0, presence of Li+ instead of K+, high Mg2+/Ca2+ ratio). After various phosphorylation intervals, the amount of ADP-insensitive phosphoenzyme was determined as the phosphoenzyme remaining after a 4-s incubation with ADP to remove [Ca2]E1P. Because the [Ca2]E1
[Ca2]E1P reaction is very rapid, the rate of appearance of ADP-insensitive phosphoenzyme corresponds to that of the [Ca2]E1P
Ca2E2P transition under these conditions. Interestingly, the rates determined for Asp59
Leu and Leu65
Ala in this way were, respectively, 3.4- and 4.2-fold higher than that of the wild type (Fig. 8 and Table II). This constitutes a second factor, besides the block of E2P dephosphorylation, contributing to the high steady-state concentration of ADP-insensitive phosphoenzyme in these mutants.
 |
DISCUSSION
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The present results provide the first functional evidence that transmembrane segment M1 of the Ca2+-ATPase is critical to Ca2+ interaction and to phosphoenzyme turnover. During active Ca2+ transport, the Ca2+-ATPase binds Ca2+ from the cytoplasmic side of the membrane, transfers the ions across the membrane, and releases them on the luminal side. It is generally believed that the translocation of Ca2+ across the membrane involves an "occluded" state, where the ions are inaccessible to the medium on either side of the membrane and their dissociation restricted by structural components acting as gates. In the occluded state, Ca2+ is bound by residues in M4, M5, M6, and M8 (8, 1012). The Ca2+ ions may become occluded within the protein concomitantly with phosphorylation from ATP (5, 33). Evidence has, however, been presented that the Ca2+ ions are not only occluded in the phosphoenzyme, but also most of the time in the non-phosphorylated Ca2+-bound form (6), as indicated by the brackets in Scheme 1. This seems to agree with the crystal structure of the Ca2+-ATPase with bound Ca2+, revealing no obvious Ca2+ entry or exit pathways (8). Furthermore, the fact that Ca2+ can dissociate only very slowly from the enzyme complex with CrATP, even though the
-phosphoryl group is not transferred to the enzyme in this complex, indicates that phosphorylation is not required for occlusion of Ca2+ (7). The present findings are consistent with the existence of a Ca2+-occluded non-phosphorylated state, whose stability depends on the structural properties of M1. Our measurements indicate a 10-fold increase of the rate of Ca2+ dissociation from this state toward the cytoplasmic side in mutants Asp59
Arg and Asp59
Leu, whereas Ca2+ dissociation was wild type-like in the mutants with arginine or leucine substitution of Glu51, Glu55, or Glu58 (Fig. 2 and Table I). The Phe57 mutants also displayed wild type-like Ca2+ dissociation, whereas Leu60
Ala/Pro and Val62
Ala caused an acceleration of Ca2+ dissociation, although to a lesser extent than the Asp59 mutations. Moreover, a remarkable 11-fold reduction of the rate of Ca2+ dissociation toward the cytoplasmic side was observed for Leu65
Ala. This demonstration of the role of M1 in Ca2+ occlusion was made feasible by the quenched flow technique that allows measurement of Ca2+ dissociation from the [Ca2]E1 form toward the cytoplasmic side, even with the relatively small amounts of enzyme that can be harvested from the cell culture. Thus, the rate of Ca2+ dissociation from the [Ca2]E1 form can be both increased and decreased by mutation within the middle part of M1 (C-terminal to the bend of M1 seen in the E2-Tg crystal structure), and our results suggest that the middle part of M1, but not the most N-terminal part containing Glu51, Glu55, and Glu58, is important in control of the gates at the Ca2+ occlusion sites.
As regards the proposed role of Glu51, Glu55, and Glu58 in the Ca2+ entry pathway (14), the results reported here clearly argue against any involvement of these glutamate side chains in Ca2+ recognition and binding, and it is not likely that they contribute to a Ca2+ selectivity filter. Furthermore, the finding that substitution of Glu58 by arginine left the Ca2+ binding properties of the Ca2+-ATPase unaffected questions the existence of a close interaction between Glu58 in M1 and Glu309 at Ca2+ binding site II, such as seen in the published crystal structure of the Ca2+-bound enzyme (8). A possible reason for this apparent discrepancy could be a high degree of thermal mobility of the Glu58 side chain. It is also possible that the [Ca2]E1 form adopted in the native state differs more profoundly from the crystal structure.
The reduced apparent affinity of mutant Asp59
Arg for Ca2+ activation of phosphorylation (Fig. 1) reflects the enhanced rate of Ca2+ dissociation from [Ca2]E1 and not a displacement of the E2-E1 equilibrium in favor of the low affinity E2 form. In fact, the data in Figs. 3 and 4 suggest that mutation Asp59
Arg enhances the rate of the E2
E1 conformational change, leading to accumulation of E1 with resulting low sensitivity to vanadate inhibition of phosphoenzyme formation. Because release of counter-transported protons from E2 may be rate-limiting for the E2
E1 transition (27), the enhancement of this transition suggests that proton dissociation from the transport sites, like Ca2+ dissociation, is facilitated by the Asp59
Arg mutation.
For mutants Leu60
Ala/Pro and Val62
Ala, the enhanced rate of Ca2+ dissociation likewise seems to result in a reduced apparent affinity for Ca2+ activation of phosphorylation. In addition, there could be a contribution to the reduced apparent affinity for Ca2+ from displacement of the E2-E1 equilibrium in favor of the low affinity E2 form in Leu60
Ala and Val62
Ala, because the vanadate affinity was slightly increased in these mutants (Table II). The apparent affinity for Ca2+ in activation of phosphorylation was normal in Asp59
Leu, despite the increased Ca2+ dissociation rate (Figs. 1 and 2). This may be accounted for by a considerably reduced rate of dephosphorylation (Figs. 5, 6, 7). As previously reported, the effect of a low rate of phosphoenzyme turnover on the apparent affinity for Ca2+ activation of phosphorylation can be understood on the basis of computer simulations of the Ca2+-ATPase reaction cycle (34). According to the computational analysis, an increased apparent affinity for Ca2+ is actually expected when the rate of phosphoenzyme turnover is reduced, because a lower phosphorylation rate (i.e. Ca2+ saturation) is required to maintain a certain level of phosphorylation under these conditions. Hence, for Asp59
Leu, the increased rate of Ca2+ dissociation and the decreased rate of phosphoenzyme turnover act in opposite directions, thereby masking the effects on the apparent Ca2+ affinity.
The importance of the middle part of M1 in the gating at the Ca2+ occlusion sites may be related to the presence of a water-accessible channel leading between M1 and M3 in the crystal structure of Ca2+-ATPase in the Ca2+-free E2-Tg form. This channel has the potential of a Ca2+ entry port and is apparently opened by the bending and partial unfolding of the helical structure of M1 at Asp59 (9). A similar channel may exist in the native non-crystalline protein and function as a migration pathway for Ca2+ in one or more of the conformations that precede the occluded [Ca2]E1 form in the process of Ca2+ binding (E2, E1, and CaE1). Because the channel leads to Glu309 at Ca2+ site II, it may provide a passage for the Ca2+ ion that binds at site II (i.e. the one that binds last in the sequential mechanism). In line with this assignment, the presently observed mutational effects on the rate of disappearance of ability to phosphorylate from ATP upon addition of EGTA (Fig. 2) reflect changes of the rate of dissociation of the Ca2+ ion that leaves first in the sequential mechanism, i.e. the one that was bound last (26, 35). The Ca2+ ion that binds first (at site I, cf. Ref. 12) might enter (and leave upon dissociation) by a different route. Some evidence has actually been presented suggesting the existence of a pre-binding site for Ca2+ in the loop between transmembrane segments M6 and M7 ("L67"), which could be related to the entry port for the Ca2+ ion binding at site I (36).
Comparison of the two crystal structures of the Ca2+-ATPase indicates that the transition from [Ca2]E1 to E2-Tg is accompanied by a lateral and upward (toward the cytoplasmic side) movement of M1 in the membrane, and bending of the helix at Asp59, which probably is caused by steric collision with M3 (9). In E2-Tg, the N-terminal part of M1 containing Glu51, Glu55, and Glu58 is bent away from M3, and their side chains define the hydrophilic surface of the amphipathic section. These residues are therefore peripherally located with respect to the proposed Ca2+ entrance. A similar position of this part of M1 in the native non-crystalline protein could explain the lack of importance of the glutamate side chains for Ca2+ binding. Asp59, on the other hand, is located right at the bending point of M1. Thus, the dramatic effect on Ca2+ dissociation of substitution of Asp59 by leucine or arginine may result from direct interference with Ca2+ interaction or interference with the movement of M1 that occludes Ca2+, a movement that conceivably is facilitated by flexibility at Asp59. The finding that alanine substitution of Asp59 is tolerated stresses the requirement for a small side chain that allows movement. The negative charge of the Asp59 side chain, which might have been expected to participate in directing Ca2+ to the binding sites, seems not to be required for normal Ca2+ interaction.
Among the hydrophobic side chains substituted in the present study, Phe57 seems less important for the Ca2+-binding properties and the E2
E1 conformational transition than expected if it were crucial to the attachment of the bent part of M1 to the lipid bilayer and, thereby, to the positioning of this part of M1. On the other hand, the lack of a significant effect on Ca2+ binding of substitution of Phe57 may be considered consistent with its location away from the proposed Ca2+ inlet, on the hydrophobic surface of the bent part of M1, and it is conceivable that the removal of a single anchoring side chain is not enough to disrupt the attachment to the lipid bilayer. As regards Leu60, Val62, and Leu65, which are embedded within the membrane, their bulky hydrophobic side chains appear to form an integral part of the wall lining the water-accessible channel seen in the E2-Tg structure, with Leu65 at the bottom. Hence, our finding of significant changes of the Ca2+ dissociation rate upon substitution of these residues with the smaller alanine seems to be compatible with the hypothesis that this channel serves as a migration pathway for Ca2+. The effects of hydrophobic size reduction in this part of M1 could simply be due to local changes in the proportions of the channel, providing a more free passage for the dissociating Ca2+ ions in case of Leu60
Ala/Pro and Val62
Ala and collapsing the channel in case of the Leu65
Ala mutation. Of course, it cannot be excluded that changes to M1 exert more distant effects on a Ca2+ migration pathway located elsewhere in the protein.
In the crystal structure of the Ca2+-bound enzyme, Leu65 is below the level of the Ca2+ ions (i.e. closer to the luminal surface), and it seems that its bulky side chain may contribute to form a luminal gate, preventing the immediate transport of the ions to the lumen upon binding from the cytoplasm. A premature transfer of the Ca2+ ions to the lumen caused by a defective luminal gate in Leu65
Ala (i.e. rapid formation of an enzyme form somewhat similar to Ca2E2P) could account for the rapid disappearance of ADP sensitivity of the phosphoenzyme in this mutant (Fig. 8), because the ADP sensitivity is thought to be specifically associated with the [Ca2]E1P form. Interestingly, also Asp59
Leu showed an enhanced rate of disappearance of ADP sensitivity of the phosphoenzyme (Table II), which again might indicate premature Ca2+ transfer to luminally facing sites. In addition to the enhanced rate of disappearance of ADP sensitivity of the phosphoenzyme, Leu65
Ala and Asp59
Leu both showed a conspicuous block of the dephosphorylation of E2P, the rate being reduced 33-fold and 4- to 10-fold (depending on pH), respectively (Table II). Hence, there is a preference for forms with luminally facing Ca2+ sites and ADP insensitivity of the phosphoenzyme (Ca2E2P and E2P) in both of these mutants. A difference between these mutants is, however, that Ca2+ dissociation toward the cytoplasmic side is increased in Asp59
Leu, whereas it is inhibited in Leu65
Ala (Fig. 2).
Some of the other mutations also affected the processing of the phosphoenzyme (Reactions 46 in Scheme 1). Hence, Leu60
Ala and Val62
Ala showed a slightly enhanced rate of dephosphorylation of phosphoenzyme formed from ATP (Fig. 5 and Table II), probably reflecting enhancement of the rate-limiting [Ca2]E1P
Ca2E2P transition. The rate of E2P dephosphorylation was markedly increased in Asp59
Arg (8-fold) and Leu60
Pro (4- to 5-fold) and to a lesser extent in Phe57
Ala/Gln and Val62
Ala (about 2-fold, Table II). It is noteworthy that the replacement of Asp59 with arginine and leucine led to opposite effects on E2P dephosphorylation, which may be attributable to the difference in charge/polarity, resulting in different potentials for salt bridge formation or interaction with the lipid bilayer. The leucine may fix this part of M1 in close contact with the lipid bilayer, whereas the arginine may tend to draw it into the solvent phase. Taken together, the effects of M1 mutations on phosphoenzyme processing demonstrate that M1, besides being important for Ca2+ interaction, furthermore is a critical element in the long range signaling between the transmembrane domain and the catalytic site in the cytoplasmic part of the Ca2+-ATPase molecule. Several pieces of evidence suggest that the A-domain undergoes large movements during the catalytic cycle, being separated from the P-domain in [Ca2]E1 and [Ca2]E1P and in rather close contact with this domain in E2 and E2P, probably contributing to the catalytic site in these forms (9, 3739). Because M1 is physically connected to the A-domain through a flexible hinge segment at the N-terminal end and through M2 at the other end, it is tempting to speculate that the movement of the A-domain is closely coupled with movement of M1, and that the effects of the M1 mutations on the processing of the phosphoenzyme, described here, are brought about by an altered position and/or reduced motional freedom of the A-domain, caused by changes of the position and structure of M1.
In conclusion, our results provide evidence for a relation of the middle part of M1 to a gating mechanism controlling the dissociation of Ca2+ from its membranous binding sites. Our results further indicate that these residues are also critical to the proper processing of the phosphoenzyme and, thus, to the long range transmission of conformational changes to the cytoplasmic catalytic site.
 |
FOOTNOTES
|
|---|
* This study was funded in part by grants from the Danish Medical Research Council, the Novo Nordisk Foundation, the Lundbeck Foundation, and the Research Foundation of Aarhus University. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. 
To whom correspondence should be addressed. Tel.: 45-89-422-814; Fax: 45-86-129-065; E-mail: jpa{at}fi.au.dk.
1 The abbreviations used are: Ca2+-ATPase, the sarco(endo)plasmic reticulum Ca2+-transporting adenosine triphosphatase (EC 3.6.1.38
[EC]
); M1M10, transmembrane segments numbered from the N terminus; MES, 2-[N-morpholino]ethanesulfonic acid; MOPS, 3-[N-morpholino]propanesulfonic acid; TES, N-[tris(hydroxymethyl)methyl]-2-aminoethane-sulfonic acid; SERCA, sarcoplasmic-endoplasmic reticulum calcium ATPase; Tg, thapsigargin. 
 |
ACKNOWLEDGMENTS
|
|---|
We thank Karin Kracht and Lene Jacobsen for expert technical assistance and Dr. J. D. Clausen (University of Aarhus) for discussion and help with some experiments. Dr. C. Toyoshima (University of Tokyo) is thanked for discussion on several occasions and Dr. R. J. Kaufmann (Genetics Institute, Boston) for the gift of the expression vector pMT2.
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