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J. Biol. Chem., Vol. 279, Issue 19, 19732-19738, May 7, 2004
Autoinhibition of the Platelet-derived Growth Factor
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| ABSTRACT |
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-receptor in the control of the receptor kinase activity. Using a panel of PDGF
-receptor mutants with progressive C-terminal truncations, we observed that deletion of the last 46 residues, which contain a proline- and glutamic acid-rich motif, increased the autoactivation velocity in vitro and the Vmax of the phosphotransfer reaction, in the absence of ligand, as compared with wild-type receptors. By contrast, the kinase activity of mutant and wild-type receptors that were pre-activated by treatment with PDGF was comparable. Using a conformation-sensitive antibody, we found that truncated receptors presented an active conformation even in the absence of PDGF. A soluble peptide containing the Pro/Glu-rich motif specifically inhibited the PDGF
-receptor kinase activity. Whereas deletion of this motif was not enough to confer ligand-independent transforming ability to the receptor, it dramatically enhanced the effect of the weakly activating D850N mutation in a focus formation assay. These findings indicate that allosteric inhibition of the PDGF
-receptor by its C-terminal tail is one of the mechanisms involved in keeping the receptor inactive in the absence of ligand. | INTRODUCTION |
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and PDGFR
(2). Each receptor contains a large extracellular domain involved in growth factor binding and an intracellular region that includes a split tyrosine kinase domain flanked by a juxtamembrane domain and a C-terminal tail. PDGF stimulation induces receptor dimerization, which causes a dramatic increase in its kinase activity, resulting in the autophosphorylation of a number of tyrosine residues in the intracellular domain that act as docking sites for cytoplasmic signaling proteins (2).
PDGF participates in the development of certain tumors, as illustrated first by the observation that the simian sarcoma virus oncogene v-sis is functionally identical to PDGF-B (3, 4). Aberrant expression of PDGF ligands or receptors occurs in certain forms of neoplasia, such as gliomas. In addition, genetic alterations of the PDGF receptor genes have been found in different types of human cancer cells. These modifications produce ligand-independent activated receptors, which stimulate cell growth in an uncontrolled manner. For instance, in chronic monomyelocytic leukemia, chromosomal translocations lead to the production of oncogenic chimeric proteins in which the PDGFR
kinase domain is fused to an oligomerization motif, such as the transcription factor Tel (5). Moreover, activating point mutations were described in the PDGFR
juxtamembrane domain and the activation loop in certain gastrointestinal stromal tumors (6).
The mechanism by which the PDGF receptor kinase is activated by ligand binding is not fully understood. In several other receptor tyrosine kinases, such as the insulin receptor, a structurally conserved mobile segment containing key regulatory tyrosines, called the activation loop, controls the access to the active site cleft. Dimerization of the kinase domain upon ligand binding provokes the trans-phosphorylation of the activation loop, which moves from a closed conformation to a position that allows substrate binding (7, 8). In the PDGF
-receptor, however, the role of the phosphorylation of the activation loop tyrosine, located at position 857, has been debated. The mutation of that residue has only a moderate effect on receptor phosphorylation (9), whereas the corresponding mutation in other tyrosine kinase receptors, such as the hepatocyte growth factor receptor (c-Met) and insulin receptors, severely impairs their kinase activities (10). In addition, introduction of the D850N mutation in the PDGFR
activation loop is not enough to confer transforming potential (this report and footnote 2),2 in contrast to the homologous mutations in the stem cell factor receptor (c-Kit) and c-Met, which have been found in tumors (1114). Altogether, these observations suggest that additional mechanisms may control the activation of PDGFR
. In this respect, the receptor juxtamembrane region, which resembles a WW domain, was suggested to play a self-inhibitory role in the receptor kinase activation (15). Finally, protein tyrosine phosphatases may also prevent receptor activation in the absence of ligand (16).
In this study, we reveal an additional intramolecular mechanism that keeps PDGFR
in an inactive state in the absence of PDGF. We show that deletion of the PDGFR
C-terminal tail increases the autoactivation velocity and the Vmax of the receptor kinase in the absence of ligand. The kinase activities of mutant and wild-type receptors were comparable when the receptors were subjected to ligand-mediated dimerization before the assay. The inhibitory function of the C-terminal tail could be mimicked by a soluble peptide comprising part of that domain. Deletion of the PDGFR
C terminus did not confer ligand-independent activation in cells but cooperated with the D850N mutation in the activation loop to produce a transforming receptor.
| EXPERIMENTAL PROCEDURES |
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inserted into the pcDNA3 cloning vector (Invitrogen) using the QuikChange kit (Stratagene). The mutations were confirmed by sequencing.
Cell Culture, Reagents, and TransfectionCOS-1 simian kidney epithelial cells (American Type Culture Collection, Manassas, VA) and porcine aortic epithelial (PAE) cells were cultured in Dulbecco's modified Eagle's medium and Ham's F12, respectively, supplemented with 10% fetal bovine serum (Sigma). NIH3T3 mouse fibroblasts and L6 myoblasts were grown in Dulbecco's modified Eagle's medium in the presence of 10% calf serum (Invitrogen). Anti-phosphotyrosine (pY99, catalog number sc-7020) was obtained from Santa Cruz Biotechnology. Polyclonal anti-PDGFR
R3 and monoclonal antibodies B1 and B2, raised against the extracellular region of PDGFR
, have been described elsewhere (16). Purified human PDGF-BB was generously provided by Amgen. Serum LW4, raised against fibroblast growth factor receptor-1 (FGFR-1) was kindly provided by Lena Claesson-Welsh.
Peptides, corresponding to amino acids residues 10631088 (PE1/2), 10631077 (PE1), and 10781088 (PE2) of the human PDGFR
C-terminal tail (amino acid sequences are PLEPQDEPEPEPQLELQVEPEPELEQ, PLEPQDEPEPEPQLE, and LQVEPEPELEQ, respectively) or a peptide derived from the C-terminal tail of human FGFR1 (PSFPDTRSSTCSSGEDSVFSHEPLPEEP) were synthesized on an Applied Biosystems 433A instrument using Fmoc (N-(9-fluorenyl)methoxycarbonyl) chemistry and purified by preparative reversed phase chromatography.
Transient transfection of COS cells and stable transfection of PAE cells was performed using a DNA-calcium phosphate procedure (Cell-Phect transfection kit, Amersham Biosciences) or LipofectAMINE Plus reagent (Invitrogen) according to the manufacturer's instructions. PDGF-BB stimulation (10 ng/ml) was performed on serum-starved COS or PAE cells for 7 min at 37 °C. Focus formation assays were performed as described (17). Briefly, cells (1.5·105 cells per 100-mm plate) were transfected with the appropriate pcDNA3 plasmid (10 µg/plate) by the calcium phosphate method in the presence of 10% calf serum (Colorado Serum Company, Denver, CO). After 24 h, serum concentration was reduced to 5%, and the cells were cultured for additional 21 days. The medium was changed every 3 days. Foci were scored after fixation and staining with Giemsa dye.
Western Blot AnalysisProtein extracts were obtained by solubilizing cells in lysis buffer (100 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% Triton X-100, 10% glycerol, 1 mM sodium orthovanadate, 1% Trasylol, and 1 mM Pefabloc). Extracts were clarified by centrifugation, and protein concentration was determined by BCA protein assay system (Pierce).
Approximately 6001000 µg of extracted protein were used per immunoprecipitation reaction. The PDGFR
was immunoprecipitated using 3 µg of B1 and B2 monoclonal antibodies kindly provided by Dr. K. Rubin. Incubation of antibodies with extracts was performed for 2 h at 4 °C after pre-incubation of 40 µl of protein A-Sepharose beads (Pharmacia) with rabbit anti-mouse antibodies (Pierce) for 30 min at 4 °C. The beads were then washed four times with buffer (20 mM Tris-HCl, pH 7.5, 5 mM EDTA, and 150 mM NaCl), boiled for 5 min in 2x Laemmli SDS-sample buffer, and run on an 8% polyacrylamide gel. Proteins were then transferred to nitrocellulose membranes and probed with antiphosphotyrosine antibodies or anti-PDGFR
antibodies (Santa Cruz Biotechnology).
Kinase AssaysTransiently transfected COS cells were lysed in lysis buffer in the absence of sodium orthovanadate to allow dephosphorylation, and PDGFR
was immunoprecipitated with anti-PDGFR
antibodies. Immunopurified proteins were then washed three times with lysis buffer and two times with kinase buffer (25 mM HEPES, pH 7.1, 5 mM MgCl2, and 100 mM NaCl). The phosphorylation reaction was performed in kinase buffer with [
-32P]ATP (5 µCi) and 50 µM unlabeled ATP for increasing periods of time at 20 °C. The reaction was stopped by addition of boiling Laemmli SDS sample buffer. The samples were analyzed by 412% gradient SDS-PAGE (Invitrogen), Western immunoblotting with anti-PDGFR
antibodies, and autoradiography. Signal quantification was performed using a PhosphorImager apparatus and Image Quant software (Amersham Biosciences).
For exogenous substrate phosphorylation assays, the phosphorylation reaction was performed in the presence of increasing concentrations of myelin basic protein (MBP) and 10 µM unlabeled ATP and [
-32P]ATP in kinase buffer for 30 min at 4 °C and blocked by the addition of EDTA. The samples were analyzed as above. Inhibitory peptides (diluted in kinase buffer, pH 8) were added to the reaction mixture at the indicated concentrations.
| RESULTS |
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Negatively Regulates Receptor Kinase ActivityTo test if the PDGFR
C-terminal tail is involved in a self-inhibitory mechanism, we constructed deletion mutants lacking the last 29, 46, and 75 amino acid residues of the receptor, referred to as ct29, ct46, and ct75, respectively (Fig. 1). We compared the kinetics of activation of these mutants with wild-type receptors, with or without activation by ligand stimulation.
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-32P]ATP. To avoid ligand-independent receptor activation induced by over-expression, only limited amounts of expression vectors were used for transfection. Receptors were immunoprecipitated from cell lysates by using a monoclonal antibody against the extracellular part of human PDGFR
, as described under "Experimental Procedures." As illustrated in Fig. 2A, the receptor mutants ct46 and ct75, in the absence of ligand stimulation, were autophosphorylated at a substantially higher rates as compared with those of wild-type PDGFR
and ct29; ct46 and ct75 reached full activation after 30 min of reaction at 20 °C, whereas wild-type PDGFR
and ct29 were phosphorylated more slowly. The increased auto-activation velocity of the ct46 and ct75 receptor mutants was observed only in the absence of the ligand; ligand-dimerized receptors and receptor mutants had comparable kinetics of auto-activation (Fig. 2B).
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and ct29 displayed an initial linear phase with a slow rate of MBP phosphorylation, gradually reaching the saturation at 60 min of reaction. By contrast, ct46 and ct75 rapidly phosphorylated MBP, reaching saturation after 30 min of reaction (Fig. 3A). Ligand stimulation enhanced the kinase activity of wild-type and ct29 mutant receptors, which reached maximal MBP phosphorylation at 30 min, whereas ct46 and ct75 reached full phosphorylation of the substrate after only 15 min (Fig. 3B). In this assay, ct75 was slightly more active than ct46. The relevance of that small difference was not clear, because it was not confirmed in other assays (see Fig. 2 and below).
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. This region contains a glutamic acid/proline repeat flanked by glutamine residues, referred to as the PE1 motif (see Fig. 1). Interestingly, a similar motif, named PE2, is also present in the last 29 amino acids of the receptor. To test the importance of the PE1 motif directly, we designed a new mutant receptor, called
PE1, in which 15 residues, including the PE1 motif, were deleted, and we compared its autokinase activation kinetics with wild-type and mutated receptors. As shown in Fig. 5A, in the absence of ligand stimulation the
PE1 mutant was autophosphorylated at the same rate as ct46 and ct75 and reached full activation after 30 min, whereas wild-type PDGFR
and ct29 were phosphorylated more slowly. As observed previously, the advantage of deleted mutants was lost after ligand stimulation. Altogether, these data suggest that the region containing the PE1 motif in the C-terminal tail of the PDGFR
is involved in an autoinhibition mechanism, which is cancelled by ligand binding to the receptor.
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autophosphorylation (Fig. 6). The PE2 peptide did not affect the kinase activity even at 1.25 mM, the highest concentration used. These results are in agreement with the data obtained on mutant receptors, because deletion of the PE2 motif (ct29 mutant) had no effect, whereas deletion of the PE1 motif enhanced the kinase activity (ct46 and
PE1 mutants). As an additional specificity control, a synthetic peptide containing a proline-rich sequence derived from the C-terminal tail of human FGFR1 was included in the experiments. This peptide had essentially no effect on the kinase activities of PDGFR
(Fig. 6) and FGFR1 (data not shown). We also found that the PDGFR
-derived peptides had no inhibitory activity on two other receptor tyrosine kinases, FGFR1 and EGFR (data not shown).
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in the absence of peptide. The inhibitory peptide also delayed the activation of the wild-type receptor, thus enhancing the inhibitory effect of the C-terminal tail, but did not affect the maximal auto-kinase activity. Thus, the ct75 mutant was more sensitive to inhibition by the PE1/2 peptide compared with the wild-type receptor, which was to be expected if this peptide mimics the region that is lacking in ct75 (Fig. 7A). Similar results were obtained in MBP phosphorylation experiments (Fig. 7B). In conclusion, these results further support the notion that a proline- and glutamic acid-rich motif in the C-terminal part of PDGFR
negatively regulates its kinase activity.
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in the Absence of LigandBishayee and colleagues (18) have suggested that the PDGFR
C-terminal tail may undergo a conformational change upon ligand binding, based on experiments performed with a conformation-sensitive antibody, called Ab-P2, raised against the unphosphorylated peptide corresponding to amino acid residues 932947 located close to the kinase domain (Fig. 1 and Ref. 18). This antibody is able to recognize the native wild-type receptor in its activated form only, indicating that the epitope is buried in the inactive receptor and becomes accessible upon ligand binding. The Ab-P2 antiserum was used to immunoprecipitate wild-type PDGFR
and ct75 from PAE cells. As shown in Fig. 8A (upper panel), Ab-P2 recognized ct75 even in the absence of PDGF. By contrast, the wild-type receptor was immunoprecipitated only after ligand stimulation, as expected. By a parallel immunoprecipitation with the monoclonal anti-PDGFR
antibodies B1 and B2, which are directed against the extracellular domain, we confirmed equal receptor expression (Fig. 8A, lower panel). Thus, the change of conformation of the C-terminal region of PDGFR
, which is induced by ligand binding, is mimicked by truncation of the last 75 amino acid residues; it is possible that this region interacts with the kinase domain or the juxtamembrane domain and thereby restricts the availability of the active site of the kinase domain.
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C-terminal domain. This conformational change likely removes the autoinhibition of the PDGFR
kinase, because it can be mimicked by deletion of the C-terminal inhibitory motif.
Transforming Ability of PDGFR
by Concomitant Deletion of the C Terminus and Mutation of the Activation LoopThe observation that the truncated PDGFR
mutants show increased kinase activities in the absence of PDGF led us to investigate whether they could be constitutively activated in vivo. For a comparison, we introduced in the PDGFR
activation loop a D850N mutation, which corresponds to mutations found in oncogenetic versions of c-Kit and c-Met (11, 12, 19). We first investigated tyrosine phosphorylation of immunoprecipitated receptors isolated from transfected COS cells that were left untreated or stimulated with PDGF-BB. All mutants displayed a strong ligand-dependent phosphorylation with little background in unstimulated cells (Fig. 9A). Because neither ct46 nor D850N were constitutively phosphorylated to any appreciable extent, we produced a double mutant, ct46-D850N, harboring both modifications; its phosphorylation was still dependent on PDGF stimulation (Fig. 9A).
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, DFSL, have been shown to interact with the PDZ domains of NHERF, which was claimed to play a role in the activation of the receptor (20, 21). To investigate whether NHERF binding is important for receptor activation in our system, we added back a DFSL motif at the end of the ct46 receptor, which restored NHERF binding as expected (Fig. 9B). However, addition of the DFSL motif did not change the kinase activation parameters in vitro (data not shown) and had no major effect on the phosphorylation of the receptor in COS cells.
The transforming potential of deleted PDGF receptors was assessed by a focus formation assay in NIH3T3. Each receptor was transfected alone or in combination with a plasmid encoding the PDGF-B ligand, creating an autocrine stimulation loop. Co-transfection of wild-type PDGFR
with PDGF-B gave rise to a basal number of transformed colonies (Fig. 9C). The ct46 or D850N mutations increased the number of transformed colonies to some extent, but still showed strong ligand dependences. By contrast, the double mutant ct46-D850N increased focus formation in NIH3T3 cell cultures even the absence of PDGF to an extent that was almost comparable to transfection with an activated Ras isoform (M-Ras Q71K; Ref. 22). The addition of the DFSL motif to these receptors did not change their abilities to promote the formation of foci (Fig. 9D), suggesting that NHERF is not important in the process. In conclusion, these results further illustrate the inhibitory role of the PDGFR
C-terminal tail and show that several mechanisms collaborate to keep the receptor inactive in the absence of PDGF.
| DISCUSSION |
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, one such inhibitory control is exerted by the C-terminal part of the receptor. This conclusion is based on three lines of evidence. First, deletion of the PDGFR
C terminus enhanced its in vitro kinase activity toward itself or an exogenous substrate. Second, peptides corresponding to a Glu/Pro-rich motif present in the C-terminal tail specifically inhibited PDGFR
activity; and finally, introduction of a C-terminal truncation increased the transforming potential of the D850N PDGFR
mutant.
We speculate that the PDGFR
C terminus moves from an inhibitory conformation to a more permissive position upon PDGF binding. Using the Ab-P2 conformation-sensitive antibody, Bishayee and colleagues had already suggested that a region located just after the PDGFR
kinase domain undergoes a conformational change that, upon ligand binding, unmasks the epitope of the antibody (18). We show that Ab-P2 was able to recognize ct75 in the absence of PDGF, suggesting that the C-terminal tail of PDGFR
is required to stabilize the inactive conformation. Ab-P2 binding also depended on PDGFR
tyrosine phosphorylation, particularly at Tyr-857 in the activation loop. It is possible that the PE1 motif directly interacts with the activation loop, which is reminiscent of what was proposed for the insulin receptor (23). In this respect, the crystal structure of another receptor tyrosine kinase, TIE2, revealed that its C terminus is located close to the active cleft (24). However, we can not exclude the possibility that mutation of Tyr-857 has an indirect effect on the conformation of the C-terminal domain by controlling the phosphorylation of other residues. The PDGFR tail could also interact with the juxtamembrane domain, which resembles a WW domain, and may therefore bind to proline rich sequences such as the PE1 motif. Further work is required to elucidate the exact structure of the PDGFR
C-terminal domain and to determine whether it folds back over the kinase domain or the juxtamembrane domain.
Recently, we and others showed that the PDGFR
C terminus acts as a binding site for the PDZ domain of NHERF (20, 21). NHERF recruitment to PDGFR
was suggested to potentiate the receptor activity in cells overexpressing the receptor (20), which was not observed in cells expressing both proteins at physiological levels (21). Our results further suggest that NHERF does not play a major role in PDGFR
activation, because the addition of a functional NHERF-binding site to the ct46 mutant did not change its activity and transforming potential. Interestingly, a change in conformation of the PDGFR
C terminus upon PDGF stimulation could provide an explanation for the observation that NHERF recruitment is ligand-dependent (21).
The deregulated activation of receptor tyrosine kinases can mediate cell transformation. In this report, we show that the deletion of 46 amino acid residues of the C-terminal tail of the PDGFR
confers a transforming potential in a focus formation assay in the presence of the ligand, whereas the concomitant deletion of the C terminus and mutation of the activation loop results in full ligand-independent oncogenic activity. Previous studies have shown that one modification of a receptor is sometimes not enough. For example, the v-kit oncogene found in the acute transforming feline retrovirus HZ4-FeSV and amino acid residues in the juxtamembrane domain and the C-terminal sequence are deleted, compared with c-kit (25). The activated form of c-Met, D1228N, which was found in tumors, mediates both transformation and tumorigenicity but still requires a ligand to generate foci in a focus-forming assay (26). This mutation overcomes the otherwise required phosphorylation of both tyrosines in the activation loop, thus reducing the threshold for activation of the Met receptor (17); introduction of a second mutation makes the receptor fully transforming and ligand-independent (27). Nevertheless, single mutations that fully activate tyrosine kinase receptors have also been described, e.g. in PDGFR
and c-Kit (6, 11, 12).
The PDGFR
C-terminal sequence is poorly conserved in the other members of the family, i.e. PDGFR
, c-Kit, Flt-3, and the CSF-1 receptor, in contrast to the case in other domains. We could not identify any similar Glu/Pro-rich sequence in other tyrosine kinase receptors. In addition, the PE1 peptide had no effect on EGFR and FGFR1. Therefore, if similar mechanisms for autoinhibition occur in other tyrosine kinase receptors, completely different epitopes are involved. In this respect, the PE1 peptide used in this report could serve as a basis for designing specific PDGFR inhibitors. Observations suggesting that the C-terminal tail may prevent activation of tyrosine kinase receptors were also provided in studies of the insulin receptor and TIE2 (24).
In conclusion, we provide evidence that a 15-residue-long Glu/Pro-rich motif in the C terminus of PDGFR
negatively regulates the activation of the receptor kinase. Future studies will have to determine how this mechanism cooperates with the activation loop, the juxtamembrane domain, or other parts of the intracellular domain of the receptor in keeping the receptor inactive in the absence of ligand.
| FOOTNOTES |
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|| Supported by a Marie Curie fellowship (European Commission) and to whom correspondence should be addressed: Experimental Medicine Unit (MEXP), Christian de Duve Inst. of Cellular Pathology, Université Catholique de Louvain, 74 Ave. Hippocrate, B-1200 Bruxelles, Belgium. Tel.: 32-2-764-6529; Fax: 32-2-764-7430; E-mail: jean-baptiste.demoulin{at}mexp.ucl.ac.be.
1 The abbreviations used are: PDGF, platelet-derived growth factor; PDGFR, PDGF receptor; EGFR, epidermal growth factor receptor; FGFR, fibroblast growth factor receptor; MBP, myelin basic protein; NHERF, Na+/H+ exchanger regulatory factor; PAE cells, porcine aortic endothelial cells. ![]()
2 F. Chiara and R. Heuchel, unpublished results. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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