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J. Biol. Chem., Vol. 279, Issue 22, 23806-23812, May 28, 2004
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From the Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH 4058 Basel, Switzerland
Received for publication, March 4, 2004
| ABSTRACT |
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| INTRODUCTION |
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NDR protein kinase and its relatives have a conserved structure consisting of an N-terminal S100B/calmodulin binding site, a catalytic kinase domain containing an insertion between subdomains VII and VIII (encompassing, in the case of NDR, a nonconsensus nuclear localization signal and the activation segment phosphorylation site), and a C-terminal regulatory domain (2, 9, 10). The human NDR1 protein has been shown to become autophosphorylated on Ser-281 and activated upon S100B binding in a Ca2+-dependent manner. The C-terminal regulatory phosphorylation site Thr-444 is phosphorylated in vivo by a so far unidentified upstream kinase (11). This phosphorylation within the hydrophobic motif, which is an event typical of the regulation of many AGC group kinases, promotes kinase activation and protein stability (12, 13). Some kinases, such as PRK2, have an Asp residue instead of a Ser or Thr residue, and a mutation of the hydrophobic phosphorylation site of to an Asp was shown to result in a constitutively active hydrophobic motif for several kinases (14, 15).
Here we describe the characterization of a second isoform of NDR protein kinase, termed NDR2, and show that mNdr1 is widely expressed, whereas mNdr2 is expressed mainly in the gastrointestinal tract of mice. NDR2 becomes activated in vivo following phosphorylation on three conserved sites, Thr-75, Ser-282, and Thr-442. Further, a NDR2-PIFtide chimera, which contains the PRK2 hydrophobic motif (PIFtide), is constitutively active. In vitro, the Ca2+-binding protein S100B stimulates activation of NDR2 and autophosphorylation on Thr-75, Ser-282, and Thr-444.
| EXPERIMENTAL PROCEDURES |
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ZAPII (Stratagene) cDNA library; the mouse Ndr2 cDNA was cloned using a 3' mEST (GenBankTM accession number AA277870
[GenBank]
) and subcloning the 5' end from a mouse brain cDNA library (Clontech) using PCR. Sequences of all clones were obtained using an ABI PRISM 3700 DNA Analyzer (Applied Biosystems) using custom-synthesized primers and compared with the appropriate genomic databases (Ensembl and Celera). Sequence analysis was performed using Seqweb 1.2 (Genetics Computer Group, Inc.). PlasmidsMammalian expression vectors encoding HA and GST epitope-tagged hNDR1 were described previously (2). Expression vectors for HA-hNDR2 and GST-NDR2 were constructed similarly. GFP-Ndr2 was constructed by amplifying the Ndr2 cDNA with primers 5'-CGGGATCCGGTACCATGGCAATGACGG-CAGGGACTAC-3' and 5'-CGGGATCCCTTCATTCATAACTTCCCAGC-3' using Pfu polymerase (Promega). The PCR product was then digested with BamHI and cloned into pEGFP-C1 (Clontech). HA-NDR2-PIFtide was constructed by amplifying NDR2 cDNA with primers 5'-CTTCCAAGCTTAGTCGACATGGCTTACCCATACGATGTTCCAGATTACGCTTCGGCAATGACGGCAGGGACTACAACAACC-3' and 5'-CGGGATCCTCACCAGTCGGCGATGTAGTCGAAGTCGCGGAACATCTCCTGCTCCTCTTTGTAGTCCGGTTCTGTGGTTATT-3' using Pfu polymerase (Promega). The PCR product was then digested with BamHI and SalI and cloned into pCMV5. All plasmids were confirmed by sequence analysis.
RNA Extraction and Real-time Reverse Transcription-PCRTissues of three 129SvPas mice were isolated and subjected to RNA extraction using TRIzol reagent (Invitrogen) and the RNeasy 96 kit (Qiagen). Reverse transcription reactions were performed using the GeneAmpRNA PCR kit according to the manufacturer's instructions (Applied Biosystems). Real-time quantitative PCR analysis was performed using an ABI Prism 7700 Sequence Detector. Specific primers and probes for each gene were designed using Primer Express 2.0 software. Amplicon sizes were 67 bp for mNdr1 and 98 bp for mNdr2. TaqMan PCR reactions were performed for mNdr1, mNdr2, and 18 S rRNA according to the user's manual. Details of primers and probes are available on request. Relative quantitations were performed by comparing the corrected Ct value of each tissue to the corrected Ct value of the brain, as described in the ABI PRISM 7700 User Bulletin No. 2.
Bacterial Expression and Kinase Assay of Human GST-fused NDR2Expression of pGEX-2T_NDR2 species in the BL21-DE3 (pRep4) Escherichia coli strain and in vitro kinase assays (autophosphorylation in presence or absence of 100 µM CaCl2 and 10 µM bovine S100B (Sigma)) were performed as described previously for NDR1 (11).
Cell Culture and HA-NDR2 Kinase AssayCulture, transfection of COS-1 and COS-7 cells, and measurement of kinase activity of HANDR2 variants were as described previously for HA-NDR1 (9).
Western BlottingImmunodetection of NDR2 phosphorylated on Thr-75, Ser-282, or Thr-442 was as described previously (11).
Mass SpectrometryAnalysis of the phosphorylation sites of GSTNDR2 was performed according to Tamaskovic et al. (11).
Immunofluorescence MicroscopyExponentially growing cells were plated on coverslips and transfected the next day with indicated constructs using FuGENE 6 (Roche) as described by the manufacturer. After 24 h of transfection, cells were washed with PBS and fixed in 3% paraformaldehyde, 2% sucrose in PBS at pH 7.4 for 10 min at 37 °C. They were then permeabilized using 0.2% Triton X-100 in PBS for 2 min at room temperature. All subsequent steps were carried out at room temperature. Coverslips were rinsed twice with PBS and incubated for 1 h with anti-HA Y11 (Santa Cruz Biotechnology) diluted in PBS containing 1% BSA, 1% goat serum. After three 1-min washes in PBS, goat anti-rabbit fluorescein isothiocyanate (Sigma) was used as secondary antibody. DNA was counterstained with 4 µg/ml Hoechst (Sigma). Coverslips were then inverted into 5 µl of Vectashield medium (Vector Laboratories). Images were obtained with an Eclipse E800 microscope using a CoolPix950 digital camera (Nikon) and processed using Adobe Photoshop 6.0 (Adobe Systems Inc.). Only cells with intact nuclei were included in the statistical evaluation. Cells expressing GFP-NDR2 were fixed and then stained for DNA without permeabilization and antibody incubation steps.
| RESULTS |
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10-fold) by OA (Fig. 3). All three phosphorylation site mutants (T75A, S282A, and T442A) displayed reduced basal activity and could not be stimulated by treatment with OA. The K119A mutation reduced basal activity to almost undetectable levels and, as expected, abolished the activation by OA. Western blot analysis of the regulatory phosphorylation site mutants T75A, S282A, T442A, and wild type with phospho-specific antibodies, which recognize the phospho-epitopes Ser-282P and Thr-442P, showed that NDR2 became phosphorylated on Ser-282 in wild type, T442A, and T75A and that this phosphorylation increased after OA treatment with the wild type and T442A but not with the mutant T75A. The kinase-dead K119A mutant was not phosphorylated on Ser-282, indicating that Ser-282 is an autophosphorylation site. Thr-442 became phosphorylated upon OA treatment in NDR2 wild type, as well as in the S282A, T75A, and K119A mutants, suggesting that Thr-442 is phosphorylated independently of NDR2 activity and is therefore targeted by an upstream kinase (Fig. 3). These results confirmed that phosphorylation on both the activation segment phosphorylation site Ser-282 and the regulatory hydrophobic motif phosphorylation site Thr-442 is required for NDR2 activation. In addition, NDR2 activity also depends on the presence of Thr-75 in the N-terminal regulatory domain.
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-C helix, could also be achieved by substituting the hydrophobic motif of protein kinase B with the constitutive active hydrophobic motif of PRK2 (PIFtide) (15). Based on the similarities of AGC group kinases, we created an NDR2-PIFtide chimera, aiming to generate an active kinase. Indeed, the NDR2-PIFtide had a more than 20-fold elevated basal kinase activity and even showed an increase in activity compared with OA-stimulated NDR2 (Fig. 4A). Phosphorylation site analysis showed increased Ser-282 phosphorylation in the NDR2-PIFtide chimera, suggesting an increased autophosphorylation activity (Fig. 4B). Therefore, we have shown that substitution of the hydrophobic motif of NDR2 with the PIFtide sequence results in a constitutively active NDR2 kinase, thus describing for the first time a constitutively active variant of the NDR protein kinase.
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2-fold after a 4-h incubation (Fig. 5A) and stimulated specific NDR activity in a concentration-dependent manner
4-fold (Fig. 5B). This suggests that NDR2 activation by Ca2+/S100B also occurs by the mechanism reported for NDR1 (9, 11). After in vitro incubation of GST-NDR2 in the presence and absence of Ca2+/S100B, the proteins were digested with trypsin and the resultant mixture analyzed by electrospray ionization-tandem mass spectrometry in a -79 precursor scan (18). This technique measures the mass to charge ratio (m/z) of all peptide species liberating a single phosphate group after fragmentation. Five (NDR2-derived) phospho-peptides were identified in both samples (the GST-NDR2 and the GST-NDR2/Ca2+/S100B), corresponding to the phosphorylation sites Thr-75, Ser-282, and Thr-442 (Fig. 5C). These results demonstrate that S100B proteins regulate NDR2 by a mechanism similar to that reported for NDR1 (11).
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| DISCUSSION |
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Our results show that NDR2 is regulated by multi-site phosphorylation similar to many of the AGC family of protein kinases. Mutation of one or both phosphorylation site residues, Ser-282 and Thr-442, of NDR2 led to an almost total loss of kinase activity, suggesting that both residues are essential for kinase activity. This is not surprising as similar observations have been made for other AGC group kinases. Recent structural studies of protein kinase B have delineated a mechanism by which multi-site phosphorylation brings about structural changes involving both disorder-to-order transitions of the alpha B and C helices and the ordering of the activation segment, concomitant with converting the kinase to a fully 1000-fold activated enzyme (13, 15). Significantly, NDR2 becomes phosphorylated on three residues in vitro. The major site, Ser-282, which is conserved among all AGC group kinases, is an essential part of the activation segment of the kinase. The second site, Thr-75, is located within the S100B-binding domain, and the third site, Thr-442, which is also conserved in the AGC group superfamily, is located outside of the kinase domain in a region enriched with hydrophobic amino acid residues ("hydrophobic motif"). In vivo mutation of the phosphorylation site residues Ser-282 and Thr-442 of NDR2 ablated kinase activity and blocked activation. In wild-type NDR2, both residues were phosphorylated upon OA stimulation, whereas in the kinase-dead mutant K119A, only the hydrophobic motif phosphorylation site, Thr-442, was phosphorylated, suggesting that the kinase activity of NDR2 is required only for phosphorylation of Ser-282. Therefore, NDR2 is phosphorylated by an upstream kinase at the C-terminal hydrophobic site in OA-stimulated COS-1 cells. However, we cannot rule out the possibility that Thr-442 autophosphorylation observed in vitro also contributes to the overall phosphorylation at this residue in vivo. Autophosphorylation on the activation segment residue has also been reported for other members of the AGC kinases such as cAMP-dependent protein kinase and protein kinase C
(22, 23). This suggests that autophosphorylation is an alternative mechanism of activation of the few AGC kinases that are not targeted by PDK1 (for review, see Ref. 24). The specificity of activation of AGC group kinases is likely to be mediated by the phosphorylation of the hydrophobic motif residue. For the NDR kinases, some significant clues suggest that upstream kinases are members of the Ste20 family. For example, the upstream kinase of Dbf2 was identified as Cdc15, one of the budding yeast Ste20-like kinases (25), and the fission yeast Ste20-like kinase Pak1/Shk1 was reported to interact genetically with Orb6 (8). The identification of this so far unknown upstream kinase for NDR will provide important information about the physiological regulation of the NDR protein kinase, which in turn could provide hints about the conditions under which this tightly controlled kinase is activated in vivo.
As demonstrated for protein kinase B, the PIFtide sequence leads to an ordered structure and therefore fully active hydrophobic motif, concomitant with an activation of the kinase (15). The similarities within the AGC group kinases in sequence similarity and mode of activation enabled us to create a constitutive active NDR2 by substituting the C terminus of NDR2 with the PIFtide sequence. The NDR2-PIFtide showed an even higher activity than the OA-stimulated kinase. This is probably because of an intrinsic stimulation of the autophosphorylation activity by keeping the kinase in the active state, which is also reflected by the increased Ser-282 phosphorylation in the NDR2-PIFtide. The constitutive active kinase will likely prove a valuable tool for the identification of downstream targets of NDR2 protein kinase.
The in vivo significance of the phosphorylation at Thr-74 in NDR1 and Thr-75 in NDR2 is unclear thus far. This threonine is within the identified S100B-binding domain of NDR protein kinase, and its mutation is critical for NDR protein kinase activity. This might be because of a missing phosphorylation event or because this residue may be structurally important for the NDR-S100B interaction. Nevertheless, recent data show that Thr-75 is not directly involved in the binding of S100B, suggesting that the phosphorylation modulates the affinity between the two proteins (26). Conservation of the kinase also encompasses the S100B-binding domain, and the mechanism of in vitro activation by S100B appears to be identical for NDR1 and NDR2. The homology between the mammalian, fly, worm, and yeast NDR kinases suggests that this mode of activation will be similar in all organisms.
The subcellular localization of NDR2 was rather surprising considering the high sequence similarity between NDR1 and NDR2. Whereas NDR1 was reported to be mainly nuclear (2), we detected NDR2 predominantly localized to cytoplasmic structures in our experimental settings. This might reflect different functions and/or substrate specificities of NDR1 and NDR2 within subcellular compartments.
Most importantly, the two mammalian isoforms differ mainly in their tissue- and cell type-specific expression patterns. It is striking that mNdr2 is expressed mainly in highly proliferative tissues with high cellular turnover, such as the stomach and the large and small intestines. Interestingly, hNdr1 was recently found to be up-regulated in highly necrotic and progressive ductal carcinoma in situ, as well as in some melanoma cell lines (9, 27). Significantly hNdr2 is up-regulated in the highly metastatic non-small cell lung cancer cell line NCI-H460 (28), suggesting a potential role of NDR protein kinase in the regulation of cancer cell morphology and migration.
The major outstanding task for the future will be the full delineation of the novel highly conserved NDR signaling pathway. Of considerable importance is the question of the identification of the predicted agonist and receptor that initiate kinase activation. The answer may then help us understand how NDR contributes to the regulation of cell morphogenesis and proliferation and how these signals are disrupted in transformed cells. Mouse knockout studies may reveal whether the observed differences in tissue-specific expression and subcellular localization of NDR1 and NDR2 reflect differences in their functions.
| FOOTNOTES |
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* The Friedrich Miescher Institute is a part of the Novartis Research Foundation. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. ![]()
Supported, in part, by Bundesamt fuer Bildung und Wissenschaft (BBW) Bern Grant 98.0176 and the Krebsliga beider Basel. ![]()
Supported by Swiss Cancer League Grant KFS-01342-02-2003. ![]()
¶ Supported, in part, by BBW Bern Grant 98.0176. ![]()
|| Supported by the Roche Research Foundation. ![]()
** To whom correspondence should be addressed. Tel.: 41-61-697-4872; Fax: 41-61-697-3976; E-mail: brian.hemmings{at}fmi.ch.
1 The abbreviations used are: NDR, nuclear Dbf2-related; HA, hemagglutinin; MS, mass spectroscopy; PBS, phosphate-buffered saline; GFP, green fluorescent protein; GST, glutathione S-transferase; h, human; m, mouse; OA, okadaic acid. ![]()
2 For abbreviations of protein kinase groups and names, see Manning et al. (29). ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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