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J. Biol. Chem., Vol. 279, Issue 31, 32979-32988, July 30, 2004
Mitotic Cyclins Stimulate the Activity of c-Myb-like Factors for Transactivation of G2/M Phase-specific Genes in Tobacco*![]() ![]() ![]() ![]() ![]()
From the
Received for publication, March 22, 2004 , and in revised form, May 26, 2004.
Myb transcription factors, which contain three imperfect repeats in the Myb domain, are evolutionarily conserved members of the Myb superfamily. Vertebrate Myb proteins with three repeats, c-Myb, A-Myb, and BMyb, play important roles at the G1/S transition in the cell cycle. In plants, this type of Myb protein controls the G2/M phase by activating or repressing the transcription of cyclin B genes and a variety of other G2/M phase-specific genes. In tobacco, two genes for Myb activators, NtmybA1 and NtmybA2, are transcriptionally controlled and are expressed specifically at the G2/M phase. As we showed here, in addition to the control at the transcriptional level, activity of NtmybA2 is also controlled at the post-translational level. We found that the transactivation potential of NtmybA2 is repressed by a regulatory domain located at its carboxyl terminus and that specific classes of cyclins A and B enhanced NtmybA2 activity possibly by relieving this inhibitory effect. Mutations at the 20 potential sites of phosphorylation by cyclin-dependent kinase (CDK) in NtmybA2 blocked the enhancing effects of the cyclins on NtmybA2 activity. Recombinant NtmybA2 was phosphorylated in vitro by a CDK fraction prepared from tobacco BY2 cells. The kinase activity for NtmybA2 in the CDK fraction was cell cycle-regulated in BY2 cells, peaking at the G2/M phase when the level of transcripts of cyclin B is maximal. Taken together, our data suggest that NtmybA2 is phosphorylated by a specific cyclin/CDK complex(es) at G2/M and that this phosphorylation removes the inhibitory effect of its C-terminal region, thereby activating NtmybA2 specifically at G2/M.
In the eukaryotic cell cycle, molecular events occur in a well-defined and reproducible sequence. The periodic activation at the transcriptional level of genes that regulate the cell cycle is fundamental to this process. In animals, transcription of several genes induced at the G1/S transition is mainly controlled by the E2F/DP heterodimeric transcription factors (for review, see Ref. 1). E2F-binding sequences are found in promoters from many genes that are transcribed at around the time of G1/S transition. Both E2F and DP factors have recently been identified in plants (for review, see Ref. 2), and some reports indicate that plant E2F/DP factors play a role at the G1/S transition (3, 4). By contrast, different mechanisms for G2/M phase-specific transcription have been proposed in plants and animals. In animal cells, G2/M phase-specific transcription is mainly regulated by two repressor elements known as cell cycle-dependent elements (CDE) and cell cycle gene homology region (CHR) (for review, see Ref. 5). These elements are found in the promoters of various G2/M phase-specific genes, which include cdc25C (6), polo-like kinase (7), aurora A (8), and cyclin B2 (9). Mutation of the CDE and CHR elements allows elevated transcription during G1 and consequent loss of cell cycle-regulated expression. In plants, G2/M phase-specific genes do not contain these repressor elements; instead, they contain a common cis element called the M phase-specific activator sequence (MSA),1 which is necessary and sufficient for the G2/M phase-specific activation of promoters (10, 11). We showed previously that members of a group of Myb transcription factors bind to MSA elements and regulate transcription by activating or repressing promoter activity (12).
The Myb family of proteins is characterized by a consecutively repeated and conserved domain of
In mammalian cells, all three known 3Rmyb proteins seem to play an important role in regulation of the cell cycle, acting specifically at the G1/S transition (for review, see Ref. 13). Unlike 3Rmyb proteins in mammals, 3Rmyb proteins in plants control G2/M phase by regulating the transcription of G2/M phase-specific genes, such as cyclin B genes. A similar role at the G2/M phase was also reported for a 3Rmyb protein in D. melanogaster (17). In plants, a wide range of G2/M phase-specific genes seem to be regulated by 3Rmyb proteins. A recent analysis of the Arabidopsis transcriptome, using a DNA tip, revealed that 93 of 8,250 genes tested showed G2/M phase-specific expression, with kinetics of expression similar to those of cyclin B genes (18). Among these 93 genes, The two 3Rmyb proteins in tobacco, NtmybA1 and NtmybA2, are structurally related to each other and function as transcriptional activators, whereas NtmybB, with a less closely related structure, also binds to the MSA element but functions as a competitive repressor (12). We showed that both cyclin B and NACK1 promoters were activated by NtmybA1 and NtmybA2 and were repressed by NtmybB in cotransfection experiments. Levels of NtmybA1 and NtmybA2 transcripts oscillate during the cell cycle and are maximal at the G2/M phase, just before the level of transcripts of the cyclin B and NACK1 genes reach a maximum. By contrast, the level of the NtmybB transcript remains almost constant throughout the cell cycle (12). Thus, it seems plausible that transcription of G2/M phase-specific genes might be regulated by a balance between activation and repression by 3Rmyb proteins, which is further regulated by transcriptional control of NtmybA1 and NtmybA2 genes themselves. We report here that another level of regulation is operational for the cell cycle-regulated activities of NtmybA1 and NtmybA2. We show that the transactivation potential of NtmybA2 is repressed by the protein's own C-terminal region and that cyclin-dependent kinases (CDKs) seem able to relieve this inhibitory effect, most probably via the direct phosphorylation of NtmybA2. Our results indicate that the G2/M phase-specific activities of NtmybA2 and, possibly, NtmybA1 are controlled by multiple mechanisms.
Plant Material and Synchronization of CellsMaintenance and synchronization of tobacco (Nicotiana tabacum) BY2 cells were performed as described previously (20, 21). In brief, BY2 cells were synchronized by treatment with aphidicolin (5 mg/liter; Wako, Osaka, Japan) for 24 h and subsequent washing with fresh medium to release the aphidicolin block. Mitotic indices were determined by examining cells that had been stained with a 1% solution of orcein in a mixture (1:1; v/v) of lactic acid and propionic acid.
Construction of PlasmidsThe reporter plasmid containing the NACK1 promoter fused to a luciferase (LUC) reporter gene (NACK1p-LUC) was described previously (12). The 4xGAL4-LUC reporter plasmid contains four copies of a GAL4-responsive element upstream of a LUC reporter gene and has been described elsewhere (22). The expression plasmid for full-length NtmybA2 (pJIT-NtmybA2) was constructed by inserting NtmybA2 cDNA at a SalI site located downstream of the double Cauliflower mosaic virus (CaMV) 35 S promoter in pJIT60 (23). A series of C-terminally truncated versions of NtmybA2, namely
Plasmid pGAL4/1xVP16 encodes the DNA binding domain of yeast GAL4 (GAL4DBD) fused to the activation domain of viral protein 16 (VP16) from herpes simplex virus downstream of the double CaMV35S promoter (22). This plasmid was used as the expression plasmid for the GAL4-VP16 fusion protein. A variant of NtmybA2 lacking the N-terminally located Myb domain (NtmybA2 Mutations in NtmybA2 at putative sites of phosphorylation by CDK were introduced by PCR using pJIT-NtmybA2 or its mutant derivatives as template. Primers were designed to encode changes from serine to alanine or threonine to alanine. A DNA fragment containing mutations T973A and S1032A was generated by PCR using the sense primer CGGGATCCCTACCTGCAACCTTTCAATAGGTAGGAGGAAGGAGCTGAAAAG and the antisense primer GACTGCAGGGGCATTTGCAGACGCACAGGAGGTCTTGGGAGGTGAAGCTCCAG. The amplified fragment, incorporating the mutations, was digested with PstI and BamHI and cloned at the PstI/BamHI sites of pJIT-NtmybA2, replacing the original PstI/BamHI fragment of pJIT-NtmybA2. To introduce mutations S906A and S912A, a sense primer, ATGAACCATGGAGCTTTCCAAGCTGAAGGAGCTTC, and an antisense primer, ATTTGCGCTCCTCGTATACGTG, were used for PCR, and the amplified fragment was digested with AccI and NcoI and cloned at the AccI/NcoI sites of pJITNtmybA2, replacing the original AccI/NcoI fragment. For mutagenesis of S849A, the sense primer GTCTTTCTTTCCACGTATACGAGGAGCGCA and the antisense primer CCATCTAGAGATGGAAGTAC were used for PCR. The amplified fragment was digested with AccI and XbaI and then cloned at the AccI/XbaI sites of NtmybA2, replacing the original AccI/XbaI fragment. To introduce mutations T518A and S551A, two different DNA fragments were generated by separate PCRs with different sets of primers, namely CCCTTTGAATCTGGTGCTCCTTGTGACAAC and AGTATTTGAAGGAGCTGTGCGAAAATCATT for one reaction and ATATAGAAAACCATCAGAGTTACTTGT and ATTCAAACATGTCCATTGGTGAACGAA for the other reaction. These reactions generated DNA fragments that encoded different regions of NtmybA2 that are adjacent to each other. These fragments were connected to each other by ligation. The product was digested with BamHI and XbaI and was then cloned at the BamHI/XbaI sites of pJIT-NtmybA2 or its mutant derivatives. The DNA fragment containing mutations T293A and S343A was obtained similarly by connecting two DNA fragments that had been generated by separate PCRs with the primer set, CATGCTCTGAATACTATGCCCCAGCCTTTGAAGAT and CATCAACTCCAGCGGAGCAATATTAGGTATGTCATCT for one reaction and the primer set GTGCTGAACTGGAGCTTGGGTCCTTCCTAT and CAGGATTCTTCAGGGCTCTTCATGCAGTGT for the other reaction. These fragments were connected by ligation. The product was digested by BamHI and XbaI and then cloned at the BamHI/XbaI sites of pJIT-N-tmybA2 or its derivatives. For mutagenesis of S922A and S939A, two oligonucleotides, CCTGCAGTCTGCTCACTCAATTGCTTCATCAATCCAATAGCATCATAGCTTCTGTCACCTGGAGCCATAAACAGTGCAAGATC and CCATGGTTCATCAACTCTCTTCTGTCAGCCCCAAGACTTGATAATGAACTTAATTTTGAGGATCTTGCACTGTTTATGGCTC, were annealed and extended by the Klenow fragment of the DNA polymerase. The resultant double-stranded DNA was digested with PstI and NcoI and cloned at the PstI/NcoI sites of pJIT-NtmybA2, replacing the original PstI/NcoI fragment. To introduce mutations T653A and S666A, PCR was performed with the sense primer GCGACACCGTGATTTGGTGGCACCTTTGTC and the antisense primer TTCTTTAATATAGAAGGTGCGCTGGTGAAA, with pJIT-NtmybA2 as template. The amplified fragment, containing the entire vector sequence, was circularized by end-to-end ligation, thereby creating a new plasmid with the mutations of interest. Introduction of mutations T8A, S609A, T625A, S632A, S799A, T898A, and S1013A was achieved with a QuikChange site-direct mutagenesis kit, in accordance with the instructions from the manufacturer (Stratagene, La Jolla, CA). The sense primers were GTGATAGAATAAGCACTGCTTCAGATGGCACTAGC for T8A, GCACAGCAAGAGTACGCCCCTCTTGGCATCC for S609A, CTTCTGTGAACTGTCTTGCTCCATTTAGGCTGTGG for T625A, TTAGGCTGTGGGATGCACCATCTAGAGATG for S632A, GTGACCTGTTCTTCGCTCCTGATCGTTTTG for S799A, GCATATCTGGAGAAGCGCCTTATAAAAGG for T898A, and CAGTGAATGTGGAGCACCTGGAAAGGG for S1013A. The antisense primers were complementary to the respective sense primers. cDNA fragments encoding A1-, A3-, B1-, and D3-type cyclins from tobacco were amplified by PCR from plasmids that included cDNA for Ntcyc25 (24), NtCYS (20), NtCYM (20), and NtcycD1 (25), respectively. PCR was conducted with the following pairs of sense primers, each of which included a BamHI site, and antisense primers, each of which included NotI site: ACGGATCCATGGCGACGACCCAGAAT and ATGCGGCCGCTTAGCAGCTTATGTTCTGGA for Ntcyc25; ACGGATCCATGGCGAACGAAGAAAATAAG and ATGCGGCCGCTCAAGCATCATCAAAAAAACAAG for NtCYS; ACGGATCCATGGCTTCAAGAAACGTTCT and ATGCGGCCGCTATTCATATGAAGAAGCAGC for NtCYM; and ACGGATCCATGGGAATACAACACAATGAG and ATGCGGCCGCGAGGGCTGCCAACAG for NtcycD1. The amplified fragments were digested with NotI, filled in by Klenow fragment, and then digested with BamHI. These fragments were cloned at the BamHI/SmaI sites of pJIT60 to obtain the expression plasmid for each tobacco cyclin. The cDNA fragment encoding A2-type cyclin was obtained by digesting a plasmid that included Ntcyc27 cDNA (24) with SalI and SmaI. This fragment was subcloned at the SalI/SmaI sites of pJIT-60 to create the expression plasmid for the A2-type cyclin. The cDNA fragment for A-type CDK (CDKA) of tobacco was amplified by PCR from the cdc2Nt1 cDNA clone (26) with a sense primer that included a SalI site, GAGTCGACATGGACCAGTATGAAAAAGTT, and an antisense primer that included a NotI site, TGGCGGCCGCTCACGGAACATACCCAATAT. The amplified fragments were digested with NotI and SalI and cloned at the NotI/SalI sites located downstream of the CaMV 35 S promoter in pTH-2 (27), replacing a sequence that encoded green fluorescent protein. The resultant plasmid, pTH2-CDKA, was used for in vitro mutagenesis to obtain a dominant-negative form of CDKA in which the codon GAC (Asp-146) was changed to AAC (Asn-146). Mutagenesis was performed with the QuikChange site-directed mutagenesis kit as described above, with the sense primer TGCTTTAAAGCTTGCAAACTTTGGATTGGCTA and the antisense primer TAGCCAATCCAAAGTTTGCAAGCTTTAAAGCA. The cDNA clones for Ntcyc25, Ntcyc27, NtcycD1, and cdc2Nt1 were generous gifts from Dr. Masami Sekine (Nara Institute of Science and Technology). All amplified fragments were sequenced to confirm that no errors had been introduced during PCR. The expression plasmid for the protein that consisted of the Myb domain of NtmybA2 fused to the VP16 activation domain (MD-VP16) was described previously (12). Transient Expression Assays with BY2 ProtoplastsTobacco BY2 protoplasts were prepared from 3-day-old cells as described previously (28). Protoplasts were transfected by polyethylene glycol-mediated direct gene transfer (29), and transfected protoplasts were cultured for 24 h at 27 °C. For each construct, five independent transfections were performed. A dual-luciferase reporter assay was performed according to the instructions form the manufacturer (Promega, Madison, WI). For each transfection, we used 10 µg of expression plasmid and 20 µg of reporter plasmid, unless otherwise indicated. Cotransfection with the 35 S-Rluc construct, in which the reporter gene for Renilla reniformis luciferase is located downstream of the CaMV 35 S promoter, was performed to provide an internal control for the efficiency of transfection. Particle BombardmentBY2 cells from an 8-day-old culture were diluted 10-fold with fresh medium, spread in a thin layer over filter paper, and then subjected to particle bombardment, which was performed as described previously (12). After bombardment, cells were suspended in fresh medium with or without aphidicolin (20 µg/l) and cultured at 27 °C. Cells were harvested 24 h after bombardment, and the activities of firefly luciferase and R. reniformis luciferase were determined as noted above. Assays of Kinase Activities in VitroFor bacterial expression of recombinant protein, cDNA fragments that encoded the C-terminal region of NtmybA2 (amino acids 441-1042) with or without mutations were cloned at the BamHI/SalI sites of the pET28a vector (Novagen, Darmstadt, Germany). The NtmybA2 recombinant protein tagged with His-T7 was produced in Escherichia coli (DE3) pLysS. After lysis of cells, the insoluble fraction was denatured and solubilized in 8 M urea and then the His-tagged recombinant protein was purified on a HiTrap chelating column (Amersham Biosciences). The eluate was dialyzed and concentrated with an Ultrafree Biomax NMWL membrane unit (Millipore, Billerica, MA), and was used as a substrate for kinase reactions in vitro.
Purification of a CDK fraction from BY2 cells and kinase reactions in vitro were performed as described previously (30). In brief, BY2 cells were homogenized with HG150 buffer (25 mM Tris-HCl, pH 7.5, 10 mM EDTA, 10 mM EGTA, 150 mM NaCl, 10% glycerol, 1 mM dithiothreitol, 20 mM For analysis of recombinant NtmybA2 protein that included mutations at potential sites of phosphorylation by CDK, mutant and wild-type recombinant proteins were produced in E. coli and purified as described above. CDK fractions were prepared as described above from BY2 cells that had been arrested at prometaphase for enrichment of mitotic protein kinases. For induction of prometaphase arrest, BY2 cells were first synchronized by treatment with aphidicolin for 24 h. After release from the aphidicolin block, cells were cultured for 4 h in fresh medium without the drug, and then they were treated with propyzamide (Sumitomo Chemical, Osaka, Japan) at a final concentration of 6 µM. Cells were cultured in the presence of propyzamide for a further 6 h and then collected for preparation of the CDK fraction.
Cell Cycle-regulated Activity of NtmybA2We showed previously, in cotransfection experiments, that the MSA-containing promoters of the cyclin B and NACK1 genes are significantly activated upon expression of NtmybA1 or NtmybA2 (12). To determine whether the transactivation activity of NtmybA2 is dependent on the stage of the cell cycle, we performed cotransfection experiments with asynchronously dividing tobacco BY2 cells and with aphidicolin-treated BY2 cells that were arrested at the S phase. We introduced a reporter plasmid that contained the NACK1 promoter fused to a luciferase (LUC) gene (NACK1p-LUC) into BY2 cells by particle bombardment. We tested two different expression plasmids. One encoded the full-length NtmybA2 protein and one encoded a chimeric protein in which the Myb domain of NtmybA2 was fused to the VP16 activation domain (MD-VP16; Fig. 1A). NtmybA2 activated the NACK1p-LUC reporter construct in aphidicolin-treated BY2 cells, but the extent of activation was significantly lower than that observed in untreated cells. By contrast, the MD-VP16 fusion protein activated the NACK1 promoter to a similar extent in aphidicolin-treated cells and untreated cells (Fig. 1B). Our results indicated that the transactivation potential of NtmybA2 is regulated during the cell cycle and that the C-terminal region of NtmybA2 might possibly be a target of the regulation.
The Activity of NtmybA2 Is Repressed by Its C-terminal RegionThe domain structure of NtmybA2 is shown in Fig. 2A. The Myb domain, localized at the amino terminus, consists of three repeats and is responsible for DNA binding. In the Myb domain, NtmybA2 shows striking similarity to the vertebrate 3Rmyb proteins c-Myb, A-Myb, and B-Myb and to D. melanogaster Myb (12). Outside the Myb domain, however, NtmybA2 does not exhibt significant similarity to animal Myb proteins or to plant R2R3-Myb proteins, but it does exhibit some similarity to plant 3Rmyb proteins. The C-terminal region of NtmybA2 includes a region of 100 amino acids that shows sequence similarity to the 3Rmyb proteins MYB3R-1 (31) and MYB3R-4 (GenBank accession number AF371975
[GenBank]
) of Arabidopsis. This similarity suggests that these 3Rmyb proteins might play similar biological roles that might be associated with the function of this conserved domain. To examine the role of the C-terminal region of NtmybA2, we generated a series of C-terminally truncated forms of NtmybA2 and analyzed their transactivation activities in cotransfection experiments (Fig. 2B). Both full-length NtmybA2 and truncated forms activated the NACK1p-LUC reporter when BY2 protoplasts were cotransfected with the respective plasmids. However, transactivation activity increased greatly upon deletion of the C-terminal region that corresponded to amino acids 1042 to 568 (Fig. 2C). The results indicated that the C-terminal region of NtmybA2 contains sequences that negatively regulate its potential for transcriptional activation. The presence of such a negative regulatory domain has been reported for mammalian 3Rmyb proteins c-Myb, A-Myb, and B-Myb (32-34). Additional deletion of amino acids 568 through 187 resulted in a decrease in activity for transactivation, suggesting the presence of a transcriptional activation domain.
NtmybA2 Is Activated by Cyclins through Its C-terminal RegionThe negative regulatory domain that we identified in the C-terminal region of NtmybA2 contained multiple potential sites of phosphorylation by CDKs (Fig. 2A), raising the possibility that this region might act as an inhibitory domain that is regulated by phosphorylation during the cell cycle. To examine whether the activity of NtmybA2 might be controlled by cyclins, we cotransfected BY2 protoplasts with expression plasmids for full-length NtmybA2 and expression plasmids for various tobacco cyclins. In plants, cyclins A, B, and D are encoded by multigene families, each of which is further subdivided into three to seven subfamilies on the basis of amino acid sequences and expression profiles during the cell cycle (35, 36). It is believed that plants do not have cyclin E, because the Arabidopsis genome does not contain genes that are homologous to animal cyclin E. In this study, we examined the effects of cyclins from the B1-, A1-, A2-, A3-, and D3-type subfamilies from tobacco, which are herein designated CycB1, CycA1, CycA2, CycA3, and CycD3, respectively (Fig. 3A). We examined effects of the cyclins on the activity of NtmybA2 by monitoring the activity of the NACK1p-LUC reporter. NtmybA2 alone enhanced the activity of the NACK1 promoter, increasing it to four to five times that in the control. However, when both NtmybA2 and some of the individual cyclins were expressed in combination, we observed even higher levels of NACK1 promoter activity. This superactivation of the NACK1 promoter was not caused only by the stimulatory effects of the cyclins on the cell cycle, because the expression plasmids for the individual cyclins, by themselves, had no significant effects on the activity of the NACK1 promoter (Fig. 3A). The superactivation depended upon the type of cyclin. Thus, CycB1, CycA1, and CycA2 mediated superactivation, whereas CycA3 and CycD3 did not. We obtained similar results when we used the expression plasmid for NtmybA1 (data not shown). The observed differences in the capacity for superactivation among the cyclins were not caused by differences in levels of expression of the cyclins in the protoplasts, because all the cyclins tested significantly increased kinase activity for histone H1, and the levels of activity were not correlated with the superactivation capacity of each cyclin (Fig. 3B). The cyclin-induced superactivation of the NACK1 promoter was reversed by coexpression of a dominant-negative form of a CDKA, a member of a group of plant CDKs that is structurally most closely related to mammalian CDC2 (26) (Fig. 3C). Thus, the effects of cyclins on the NACK1 promoter seemed to be mediated by the kinase activity of a CDK that bound to individual cyclins, and the targets of phsophorylation by the CDK were most probably NtmybA1 and NtmybA2. The cyclin-induced superactivation was not specific to the NACK1 promoter; we obtained essentially the same results with a reporter plasmid fused to a cyclin B promoter (data not shown).
We attempted next to identify the region of NtmybA2 that was responsible for the cyclin-induced superactivation of the NACK1 promoter. We cotransfected BY2 protoplasts with expression plasmids for full-length or C-terminally truncated versions of NtmybA2 and the NACK1p-LUC reporter plasmid, with and without an expression plasmid for CycB1. For each form of NtmybA2, we determined the effects of the cyclin by comparing the NACK1p-LUC reporter activity with and without coexpression of the cyclin. As shown in Fig. 3D, full-length NtmybA2 was able to mediate cyclin-induced superactivation, inducing 2-fold higher reporter activity when CycB1 was coexpressed. However, the C-terminally truncated version of NtmybA2, 704, had lost the ability to mediate cyclin-induced superactivation. Further deletion of NtmybA2 did not alter the capacity for mediating superactivation. The results were consistent with the hypothesis that specific cyclins counteract the inhibitory effect of the C-terminal domain of NtmybA2.
Cyclin-induced Activation of NtmybA2 Does Not Require the DNA-binding DomainTo confirm the function of the C-terminal domain of NtmybA2, we fused the C-terminal region of NtmybA2 that lacked the Myb domain (NtmybA2
Phosphorylation of NtmybA2 by CDKTo support the hypothesis that NtmybA2 is activated by CDK-mediated phosphorylation, we examined whether CDK can actually phosphorylate NtmybA2 in vitro (Fig. 5). We prepared a CDK fraction from BY2 cells using p13SUC1-agarose beads. p13SUC1 is a well-characterized docking protein that binds with high affinity to CDKs (37). As a substrate, an N-terminally deleted version of NtmybA2 (amino acids 441-1042) was produced in E. coli (NtmybA2 N). The p13SUC1-associated fraction from BY2 cells was able to phosphorylate the recombinant NtmybA2 N protein. The kinase activity for NtmybA2 was strongly inhibited by the CDK-specific inhibitor roscovitine. To examine the cell cycle-dependent changes in kinase activity for NtmybA2, we synchronized BY2 cells using aphidicolin. Fig. 6 shows that the mitotic index was highest 8 h after removal of aphidicolin. We prepared a set of p13SUC1-associated fractions from cells at different times, as indicated, and then examined the kinase activity with histone H1 and NtmybA2 N as substrates. The kinase activities of the p13SUC1-associated fractions did not change significantly during the cell cycle when histone H1 was the substrate. By contrast, there was a clear peak of kinase activity for NtmybA2 N 8 h after the removal of aphidicolin, coinciding with the highest mitotic index. These results provide strong evidence that NtmybA2 is a direct target of CDK. The timing of the peak of CDK activity for NtmybA2 was closely correlated with the timing of the function of NtmybA2 (that is, the activation of transcription of G2/M phase-specific genes, such as the cyclin B and NACK1 genes).
Cyclin-induced Activation of NtmybA2 Requires Potential Sites of Phosphorylation by CDKNtmybA2 contains 20 possible sites (S/T-P motifs) of phosphorylation by CDK. To determine which sites among these S/T-P motifs might be relevant to the cyclin/CDK-mediated regulation, we examined the effects of mutations of NtmybA2 at these potential sites of phosphorylation by CDK. The S/T-P motifs are located at amino acid positions 8, 293, 343, 518, 551, 598, 609, 625, 632, 653, 666, 799, 849, 906, 912, 922, 939, 973, 1013, and 1032 (Fig. 7A). We numbered these motifs 1 to 20; the motif closest to the amino terminus was designated motif 1. As shown in Fig. 7A, we constructed expression plasmids for mutated NtmybA2 proteins that lacked potential sites of phosphorylation in various combinations. Mutations were introduced such that the serine or threonine residue at individual potential sites of phosphorylation was changed to an alanine residue. When trasfected into BY2 protoplasts, all mutant forms tested enhanced the activity of the NACK1p-LUC reporter from 2- to 4-fold (Fig. 7B). We then tested the effect of coexpression of cyclin (CycB1) on the activities of wild-type and mutant forms of NtmybA2 (Fig. 7C). The ability of wild-type NtmbyA2 to transactivate the NACK1 promoter was increased 2-fold by coexpression of CycB1. This enhancing effect of CycB1 on activation of the NACK1 promoter was completely lost when all 20 potential sites of phosphorylation were mutated simultaneously (Fig. 7C, NtmybA2 m1-20). This result is consistent with our hypothesis that cyclin-induced activation of NtmybA2 is caused by the direct phosphorylation of NtmybA2 by CDK. Mutation of motifs 4-20 similarly abolished cyclin-induced activation, suggesting that motifs 1-3 might not be important for cyclin-mediated regulation of NtmybA2 activity (Fig. 7C, NtmybA2 m4-20). Mutation of motifs 4-10 and 6-10 reduced cyclin-induced activation to a similar extent (Fig. 7C, NtmybA2 m4-10 and NtmybA2 m6-10). Thus, site(s) relevant to cyclin-mediated regulation might correspond to motifs 6-10 located in the conserved domain of NtmybA2. Mutations of motifs 8-10 reduced cyclin-induced activation to a lesser extent than mutation of motifs 6-10, suggesting that multiple sites within motifs 6-10 might be relevant to the cyclin-induced activation of NtmybA2. The mutant form of NtmybA2 that lacked motifs 11-20 (NtmybA2 m11-20) was activated by cyclin to a lesser extent than was wild-type NtmybA2, suggesting that the site(s) relevant to cyclin-mediated regulation might also be included within these motifs. All the results together indicate that the presence of potential sites of phosphorylation by CDK is essential for cyclin-induced activation of NtmybA2. However, no single site of potential phosphorylation is absolutely critical for cyclin-induced activation. Our data suggest that cyclin-induced activation of NtmybA2 requires many putative sites of phosphorylation and that each site makes a contribution to the cyclin-induced activation. At least two regions of NtmybA2 are important for cyclin-mediated regulation; one is located in the conserved domain that includes motifs 6-10, and the other, including motifs 11-20, is located at the carboxyl terminus.
We examined whether the mutations at potential sites of phosphorylation might affect the phosphorylation of NtmybA2 by CDK in vitro. The N-terminally deleted form of NtmybA2 (NtmybA2 N) was expressed in E. coli and used as a substrate for phosphorylation in vitro. This version lacks amino acids 1-440, and, thus, does not contain three potential sites of phosphorylation (motifs 1-3). We prepared a p13SUC1-associated fraction from BY2 cells that had been treated with propyzamide. Approximately 85% of cells were arrested at prometaphase during treatment with propyzamide. The recombinant NtmybA2 N protein was phosphorylated by the p13SUC1-associated fraction from these BY2 cells (Fig. 7D), as shown similarly in Fig. 5. When the mutant form of NtmybA2 N that lacked all S/T-P motifs was used as the substrate, the extent of phosphorylation was greatly reduced (Fig. 7D, NtmybA2 -Nm4-20). Thus, it seems that most, if not all, of the CDK activity in the p13SUC1-associated fraction phosphorylated NtmybA2 at S/T-P motifs. The extent of phosphorylation of NtmybA2 Nm4-20 was very low relative to that of Ntmyb-A2 N and might represent the activities of other kinases that were co-purified in our CDK fraction. When NtmybA2 N containing mutations in motifs 11-20 or 4-10 was used as substrate, intermediate levels of phosphorylation were observed in both cases (Fig. 7D). The levels of phosphorylation of wild-type and mutant NtmybA2 N proteins in vitro were roughly correlated with the extents of cyclin-induced activation in co-transfection experiments. Thus, the results presented here support our hypothesis that direct phosphorylation of multiple S/T-P motifs by cyclin/CDK might be required for full activation of NtmybA2.
We showed previously that, in tobacco cells, 3Rmyb proteins control the transcription of various G2/M phase-specific genes, including cyclin B genes. The levels of transcripts for two tobacco 3Rmyb proteins, NtmybA1 and NtmybA2 are themselves regulated during the cell cycle and are highest just before the level of cyclin B transcripts reaches a maximum (12). In this report, we showed that, in addition to the regulation at the transcription of genes for NtmybA1 and NtmybA2, the activities of the two proteins themselves are controlled by cyclin/CDK. We showed first that the C-terminal region of NtmybA2 represses its transactivation potential. Deletion of this region dramatically increased the activity of NtmybA2. Next, we showed, in cotransfection experiments, that specific types of cyclin enhance the activity of NtmybA2 via the latter's C-terminal region. Finally, we showed, by kinase assays in vitro, that the C-terminal region of NtmybA2 is phosphorylated by CDK(s) and that the CDK activity for NtmybA2 is cell cycle-regulated, peaking at G2/M. Taken together, our data suggest that the C-terminal region of NtmybA2 is phosphorylated by a specific cyclin/CDK complex(es) at G2/M and that this phosphorylation removes the inhibitory effect of the C-terminal region, thereby activating NtmybA2 specifically at G2/M. In this study, we have not identified the substrate of CDK that is responsible for activation of NtmybA2. Our data do not exclude the possibility that CDK might phosphorylate some unidentified protein, which might then affect the activity of NtmybA2. However, it is likely that activation of NtmybA2 is caused by direct phosphorylation of NtmybA2 by CDK because CDK(s) phosphorylated NtmybA2 directly in vitro and the activity was detected at the time when NtmybA2 should be active in the cell cycle. In addition, the effects of cyclin on the capacity of NtmybA2 for transactivation depended on the presence of potential sites of phosphorylation by CDK in NtmybA2. The mutant form of NtmybA2 lacking all potential sites of phosphorylation by CDK failed to be activated by cyclin. The CDK activity for NtmybA2 seemed to be associated with specific classes of cyclins, because CycA1, CycA2, and CycB1, but not CycA3 and CycD3, were able to activate NtmybA2 in cotransfection experiments. The genes for cyclins with the potential for activation of NtmybA2 are expressed late in the cell cycle: CycA2 at G2 and CycA1 and CycB1 at G2/M (20, 24, 38). Thus, the timing of the expression of these cyclins is consistent with the timing in the cell cycle of the CDK activity for NtmybA2, suggesting that CDK activity for NtmybA2 might be associated with these cyclins. The genes for cyclins CycD3 and CycA3, which were inactive in the activation of NtmybA2, are expressed constitutively2 and S-phase-specifically (20), respectively.
By contrast to the function of 3Rmyb proteins at the G2/M phase in tobacco, mammalian 3Rmyb proteins (c-Myb, A-Myb, and B-Myb) seem to play an important role at the G1/S transition. c-Myb controls target genes that encode regulators required for the G1/S transition, such as CDC2 (39), c-Myc (40), and cyclin A (41), whereas the targets of tobacco 3Rmyb proteins are genes required at G2/M, including the cyclin B and NACK1 genes (12). Moreover, the timing of transcription differs between genes for mammalian 3Rmyb proteins and tobacco 3Rmyb proteins; the former are transcribed at G1/S and the latter at G2/M. The A-Myb and B-Myb genes are expressed at G1/S in vascular smooth muscle cells, fibroblasts, and hematopoietic cells (42, 43). The cell cycle-dependent expression of B-Myb is controlled via the E2F-binding sites in the B-Myb promoter region (44). In addition to transcriptional regulation, post-translational regulation also influences the cell cycle-dependent functions of 3Rmyb proteins in mouse and human cells. The c-Myb, A-Myb, and B-Myb proteins all contain a C-terminal conserved domain that represses their transactivation potential (32-34). As we have shown here for tobacco 3Rmyb proteins, the transactivation potential of A-Myb and B-Myb is derepressed by phosphorylation of their C-terminal regions by specific cyclin/CDK complexes. Although cyclin/CDK complexes similarly regulate the activities of 3Rmyb proteins from tobacco and mammals, the cyclins involved in such regulation are different. In mouse cells, the activity of B-Myb is stimulated by cyclin A and weakly by cyclin E, but not by cyclins B1 and B2 (32). Mouse A-Myb and human B-Myb are also activated by cyclins A and E (34, 45). Moreover, the cyclin E/CDK2 and cyclin A/CDK2 complexes play essential roles at the G1/S transition and during the S phase, respectively (46), and, consistent with these observation, phosphorylation of mouse B-Myb occurs specifically in cells at S phase (47). The different mechanisms for regulation of the activities of 3Rmyb proteins in plants and mammals should be derived from a common mechanism in a common ancestor. Thus, it is tempting to speculate that, during evolution, ancestors of plants and mammals developed the capacity to exploit different cyclins to control the activity of 3Rmyb proteins at different times during the cell cycle. In D. melanogaster, Myb is involved in the control of the G2/M transition via induction of cyclin B transcription (17), as we also demonstrated previously in tobacco (12). However, it remains to be determined whether cyclin in D. melanogaster regulates the activity of the Myb. We identified NtmybA2 as a target of phosphorylation by CDK(s) in tobacco. A CDK fraction from BY2 cells phosphorylated the C-terminal region of NtmybA2 in vitro, suggesting that NtmybA2 might be a direct substrate for a CDK(s). Only a few potential substrates for CDKs have been identified in plants. They include a retinoblastoma-related protein (25), a heat-shock transcription factor (48), and an NPK1 mitogen-activated protein kinase kinase kinase.3 Thus, our findings add a new member to the list of target proteins of plant CDKs. The kinase activity for NtmybA2 in the CDK fraction oscillated during the cell cycle, whereas the kinase activity for histone H1 was higher and remained unchanged throughout the cell cycle. It is likely that histone H1 can be phosphorylated by various cyclin/CDK complexes in the CDK fraction, whereas the kinase activity for NtmybA2 is probably associated with certain specific combinations of cyclin and CDK, which most probably include CycA1, CycA2, or CycB1.
Because the gene for CycB1 is itself a target of transcriptional activation by NtmybA2, we can postulate the existence of a positive feedback loop, in which transcription of the cyclin B gene is activated by NtmybA2, which is, in turn, activated by a CDK in a complex with cyclin B. In fact, not only NACK1 promoter but also the cyclin B promoter was superactivated by CycB1, when CycB1 was coexpressed with NtmybA2. A similar feedback mechanism has been proposed for the G2/M phase-specific transcription of the mitotic cyclin genes, CLB1 and CLB2, in budding yeast. In this system, CDK activities associated with mitotic cyclins promote the transcription of genes that themselves encode mitotic cyclins (49). G2/M phase-specific transcription of CLB and other genes is mediated through assembly of a transcription factor complex at the target promoters. This complex consists of MADS-box transcription factor MCM1, the forkhead transcription factor FKH2, and the coactivator NDD1 (50). A recent report showed that NDD1 is recruited to target promoters though the C-terminal domain of FKH2 and that this recruitment requires phosphorylation of NDD1 by a CDK activity associated with mitotic cyclins (51). Thus, in yeast, NDD1 seems to be the target of phosphorylation for the positive feedback control of transcription of CLB genes. We have shown here that, in plants, 3Rmyb transcription factors are possible targets of phosphorylation for the feedback control of cyclin B transcription. Such a positive feedback circuit might facilitate the rapidly enhanced transcription of cyclin B during G2 and open the unusually small window of expression of cyclin B genes. The dependence on CDK activity associated with cyclin B, which disappears as a result of selective proteolysis at the end of mitosis (52, 53), also helps to explain the repression of cyclin B transcription as cells enter G1. Our goal now is to identify the molecular switch for entry into the feedback loop. Because transcription of the NtmybA2 gene is itself cell cycle-regulated and occurs just before that of cyclin B, induction of NtmybA2 transcription might be a trigger for entry into the feedback loop. We are currently dissecting the promoter of the NtmybA2 gene as part of our efforts to characterize the upstream control of G2/M phase-specific gene expression in plants.
* This work was supported in part by a grant from Program for Promotion of Basic Research Activities for Innovative Biosciences and by Grants-in-Aid 14036216 and 14036211 for Scientific Research on Priority Areas from the Ministry of Education, Science, Culture and Sports of Japan. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
|| To whom correspondence should be addressed: Department of Regulation of Biological Signals, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan. Tel.: 81-52-789-4168; Fax: 81-52-789-4165; E-mail: masakito{at}agr.nagoya-u.ac.jp.
1 The abbreviations used are: MSA, M phase-specific activator sequence; CDK, cyclin-dependent kinase; LUC, luciferase; CaMV, cauliflower mosaic virus; 3Rmyb, three-repeat Myb; GAL4DBD, DNA binding domain of yeast GAL4; VP16, viral protein 16; CDKA, tobacco A-type CDK; MD-VP16, Myb domain of NtmybA2 fused to the VP16 activation domain; VP16AD, VP16 activation domain.
2 M. Sekine, personal communication.
3 T. Soyano and Y. Machida, unpublished data.
We thank Dr. Masami Sekine (Nara Institute of Science and Technology) for providing cDNA clones for tobacco cyclins and Dr. Masaki Ishikawa for technical assistance and helpful advice.
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