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J. Biol. Chem., Vol. 279, Issue 33, 34756-34762, August 13, 2004
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From the
Department of Biology and Plant Biochemistry, University of Munich, Menzinger Strasse 67, 80638 München, Germany, the
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, 17177 Stockholm, Sweden, and the ¶Max-Planck Institut for Plant Breeding, Carl-von-Linne-Weg 10, 50829 Köln, Germany
Received for publication, March 12, 2004 , and in revised form, May 7, 2004.
| ABSTRACT |
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| INTRODUCTION |
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Preproteins are recognized in a GTP-dependent manner by the Toc34 receptor at the chloroplast surface (68). The GTPase activity of Toc34 is greatly stimulated by precursor binding, and upon GTP hydrolysis the preprotein is released from Toc34GDP to Toc159 (9). Toc159, another GTP-dependent protein, interacts with the preprotein in a manner that also involves GTP hydrolysis (6, 10, 11). Toc159 facilitates the translocation of the preprotein through the import channel Toc75 (12, 13). The preprotein then engages the Tic complex to move across the inner envelope in an ATP-requiring fashion (1416). Several subunits of the Tic complex have been identified. Tic110, which is the second most abundant protein in the inner envelope (1720), can form an aqueous ion channel in vitro and is therefore thought to form the translocation pore (21). However, because of different proposals about the topology and structure of Tic110 (21, 22), the exact function of Tic110 is not resolved. In addition, Tic110 could interact with the molecular chaperones cpn60 and Hsp93 on the stromal face of the membrane. It could also act as a chaperone recruitment factor (17, 19), a role that could also be mediated by Tic40, a Tic subunit that might function as a co-chaperone because of the presence of a TPR domain and homology to heat shock interacting and heat shock organizing proteins (23, 24). The molecular role of the other Tic subunits is less well defined. Tic62 and Tic55 have redox properties and could be involved in regulation of translocation across the inner envelope membrane (25, 26). Tic22 is a peripheral subunit exposed to the intermembrane space and could therefore function as a link between the Toc and the Tic complexes (27). Tic20 is an integral protein of the inner envelope and shows homology to amino acid transporters (27, 28). This led to the assumption that Tic20 is involved in the formation of a translocation channel that might be formed independently or together with Tic110. Biochemical evidence for a distinct function of Tic20 is, however, still missing. Plastids isolated from an Arabidopsis Tic20 antisense line show reduced import yields, and translocation seems to be arrested at the level of the Tic complex (29).
Tic110 is the most abundant of all Tic subunits in the inner envelope of chloroplasts. The N-terminal domain of Tic110 (amino acids 1180) contains 12 hydrophobic transmembrane
-helices that anchor the protein in the membrane and that are also required for targeting and insertion into the inner envelope (17, 18). In an attempt to find interaction partners of Tic110, we identified a novel 32-kDa protein localized in the inner envelope. This protein interacts tightly with other Tic subunits and forms a chemical cross-link product with a precursor protein. It is an essential gene in Arabidopsis and we propose to call it Tic32.
| MATERIALS AND METHODS |
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Arabidopsis thaliana (var. Columbia) were grown under a 14-h light/10-h dark cycle at 20 °C on Murashigee and Skoog medium (32) or soil. Mutants were selected with Basta.
Production of AntibodiesFull-length tic32 was cloned into the pET21d vector (Novagen, Schwalbach, Germany) with a C-terminal His6 tag. The protein was expressed in Escherichia coli and purified by metal-chelating chromatography prior to immunization.
Isolation of Tic32 Mutants (at4g23430)Mutant line Garlic 861 was obtained from Syngenta (33). Mutant line 117H08 was generated in the context of the GABI-KAT (Max-Planck-Institute of Plant Breeding, Cologne, Germany) (34) program. When grown on medium containing Basta, no homozygous plants could be observed, but compared with wild-type seeds about 20% of mutant seeds did not germinate. In Garlic 861 the T-DNA insertion is located in the first intron; in 117H08 the T-DNA is located in exon IV as verified by DNA sequencing (see "Results").
Screening of Phage-based cDNA LibraryScreening of pea (Pisum sativum L.) Uni-Zap cDNA library was performed according to the manufacturer's recommendation (Stratagene, La Jolla, CA) using degenerate oligonucleotides deduced from peptide sequences of the pea protein. Both strands of the obtained cDNA clone were sequenced (GenBankTM accession number AY488758 [GenBank] ).
Interaction Partners of Tic110 To find interaction partners of the N terminus of Tic110, a hybrid protein of mature Tic110 (amino acids 39269) and a C-terminal fusion with mSSU-His6 (35) or with a His6 tag alone were overexpressed in E. coli as inclusion bodies, dissolved in 20 mM Tris/HCl, pH 8.0, 250 mM NaCl, and 8 M urea, immobilized onto nickel-nitrilotriacetic acid matrix, and washed with the above buffer. After washing, the refolding of the protein on the matrix was achieved by creating refolding conditions on the matrix with a linear gradient of 8-0 M urea in 20 mM Tris/HCL, pH 8.0 (36). The column was then equilibrated in phosphate-buffered saline (137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, 2 mM KH2PO4), pH 7.2.
500 µl of inner envelope vesicles corresponding to 0.51 mg of protein were pelleted and resuspended in 100 µl of phosphate-buffered saline, pH 7.2, 3% decylmaltoside, incubated on ice for 10 min, and diluted to 2 ml with phosphate-buffered saline. Unresolved membrane fractions were removed by centrifugation, and the supernatant was passed three times over the matrix. Proteins bound to the matrix were eluted with a KCl step gradient (200, 400, 600, 800, and 1000 mM in phosphate-buffered saline). Fractions were precipitated with 10% trichloroacetic acid and analyzed by SDS-PAGE followed by silver staining (37). For protein sequencing, the affinity purification was repeated three times. The fractions were pooled, precipitated with 10% trichloroacetic acid, separated by SDS-PAGE, and transferred onto polyvinylidene difluoride membrane. The membrane was briefly stained with Coomassie G250, and the protein band of interest was treated with trypsin and used for protein microsequencing (Top Lab, Munich, Germany).
Immunoprecipitation and Cross-linkingIsolated inner envelope vesicles were solubilized in 2% octylglucoside, 25 mM Hepes/NaOH, pH 7.6, 150 mM NaCl, and 0.05% egg albumin. After centrifugation, the supernatant was incubated with antisera against Tic110 and Tic32, incubated with protein A-Sepharose (Amersham Biosciences) for 1 h, and washed extensively with 10 volumes of the above buffer. Proteins were eluted with SDS-sample buffer.
Cross-linking was carried out as described earlier (23, 38). In short, pea chloroplasts (15 µg of chlorophyll) were incubated with radiolabeled pSSU for 2 min on ice or for 10 min at 25 °C. Cross-linking was performed with 0.5 mM dithiobis succinimidyl propionate for 15 min on ice and quenched with 25 mM glycine for 15 min on ice. Chloroplasts were lysed (25 mM Hepes/NaOH, pH 7.6, 0.5 mM EDTA). After centrifugation (125,000 x g, 30 min), the membrane fractions were solubilized in 1% SDS in 25 mM Hepes/NaOH, pH 7.6, 150 mM NaCl, 0.05% egg albumin. Solubilized membranes were diluted to 0.1% SDS, immunoprecipitated with antisera against Toc75, Tic110, Tic32 and preimmune serum and coupled onto protein A glass beads (ProSep-vA-High Capacity; Millipore, Eschborn, Germany). The matrix was washed extensively with the above buffer. Cross-links were cleaved with
-mercaptoethanol in SDS-sample buffer. Radiolabeled proteins were analyzed using a phosphorimaging (Fuji BAS 3000) and quantified using the Aida software.
MicroscopySeeds were cleared in Hoyer's solution (39) and observed using Normarski optics (Axiophot; Zeiss, Jena, Germany).
| RESULTS |
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-mercaptoethanol by SDS-PAGE. Antisera against Toc75, Tic110, Tic40, and Tic32, but not against OEP24 or preimmune serum, could co-immunoprecipitate the radiolabeled precursor at 4 °C and 3 mM ATP (Fig. 3, B and C). These conditions allow the formation of translocation intermediates, i.e. precursor proteins are in contact with Toc and Tic subunits but do not allow complete translocation. At 25 °C in the presence of 3 mM ATP, the mature form (mSSU) also became detectable when
-Tic110 or
-Tic32 was used for immunoprecipitation. The mSSU form was less pronounced in
-Toc75 precipitates, indicating that Tic32 is in close proximity to the preprotein at a late stage of translocation. Processing of precursors occurs concomitant to translocation; thus the presence of mSSU as a cross-linked partner is not surprising and indicates that Tic32 is in close proximity to a preprotein late in the translocation process. A similar cross-link product ratio of pSSU and mSSU with Toc75, Tic110, and Tic40 was observed in import reactions that lasted up to 20 min (23).
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-Tic110 or
-Tic32. Antigen-antibody complexes were purified by protein A-agarose, and co-fractionated protein was determined by immunoblot analysis.
-Tic32-immunoprecipitated complex contained Tic110, Tic62, Tic 40, and Tic32, but no Toc75 and very little Tic22 (Fig. 3A). The complex composition obtained by
-Tic110 co-immunoprecipitation was similar, except that we constantly observed significant amounts of Tic22. Because Tic22 is a peripheral subunit of the Tic complex, it could be that Tic22 and Tic110 also interact independently of other Tic subunits. Tic32 Knock-out LinesIn Arabidopsis two genes are present that show significant homologies to Tic32 over the entire coding region, namely at4g23430 and at4g41140. As shown by RT-PCR analysis (Fig. 4A), only at4g23430 is expressed in all examined tissues. Together with the data from the proteomic analysis of envelope membranes from Arabidopsis chloroplasts, we anticipate that pea Tic32 is the orthologue of the at4g23430 gene product. Two independent T-DNA insertion lines for at4g23430 were available from different resource centers (Fig. 4B). Both Arabidopsis lines, attic32synintronI and attic32KölnexIV, were cultivated and the F1 generation was analyzed for homozygous offspring. We were unable to obtain homozygous insertion lines, indicating that atTic32 is essential for viability. Support for this idea came from the observation that, in contrast to wild-type, seed pods from mutant lines contained numerous aborted seeds that seem to fail to develop properly (Fig. 4C). Embryos from wild-type seeds as well as from mutant seeds were analyzed by light microscopy using Normarski optics. In wild-type seeds we could see a clear development from globular (Fig. 4D, a) to heart stage (Fig. 4D, b and c) to torpedo stage (Fig. 4D, d). In mutant seeds the globular stage of embryo development was still normal (Fig. 4D, e and f); however, embryos in the heart stage looked deformed and not as symmetric as wild-type (Fig. 4D, g and h). In no case could we observe any torpedo stage in aborted seeds.
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| DISCUSSION |
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-sheet, and the active site tetrad consisting of Asn, Ser, Tyr, and Lys residues (Fig. 1C) (45). Short-chain dehydrogenases/reductases are involved in various processes in cellular homeostasis, e.g. in basic metabolic roles (fatty acid or sugar metabolism), control of hormone ligand levels, transcriptional regulation, and apoptosis (44, 4650). SDR enzymes, such as several retinol dehydrogenases (RDH), are frequently membrane-bound, where they form complexes with other membrane proteins (51, 52). Tic32 is the Pisum ortholog of a previously defined SDR cluster found in a cross-species comparison between Homo sapiens, Caenorhabditis elegans, Drosophila melanogaster, and Arabidopsis thaliana (53), as shown in Fig. 1C. To this end, the molecular functions of this ortholog cluster have mostly been studied in humans, represented by the WW domain containing reductase WWOX; however, its substrate specificity has not yet been determined. WWOX is a proapoptotic oncogene and interacts with signaling molecules like JNK1 or p53 and is thereby involved in stress signaling. Tic32 displays several important structural features. Tic32 does not show the N-terminal WW interaction domain, as compared with human WWOX, but instead is highly similar to other members of the cluster, e.g. human retinol dehydrogenases RDH11 and RDH13. No obvious transmembrane domain can be found within the primary structure using different prediction methods; however, Tic32 shows high homology to the hydrophobic SDR proteins RDH11 and RDH13 (Fig. 1C), which are ER membrane-bound. The sequence alignment and our own experimental data (54) indicate that Tic32 is targeted and imported without a detectable presequence but by internal sequence information. Taken together, the biochemical data obtained and the theoretical considerations outlined above make it possible that Tic32 acts as an important component of a membrane transport complex with essential functions for cellular integrity, as demonstrated by the gene deletion experiments in A. thaliana. At present, the molecular substrate of Tic32 remains unknown, but as outlined below, Tic32 might function as redox sensor in the chloroplast import machinery. Because the association of Tic32 with Tic110 does not necessarily mean an involvement of Tic32 in protein translocation, we used co-immunoprecipitation to confirm the affiliation. With antisera against Tic32 and Tic110, all other known Tic components, namely Tic110, Tic62, Tic40, Tic32, and Tic22, could be precipitated. In a second approach, we tested whether Tic32 interacts with precursor proteins during translocation. For this purpose we used chemical cross-linking with dithiobis succinyl propionate (23, 38). pSSU could indeed be immunoprecipitated with antiserum against Tic32, even the mature form, indicating that it might play a role late in the import process (23).
To further investigate this possible role, we utilized two independent T-DNA insertion lines from the Arabidopsis homologue at4g23430. We used this homologue and not at4g11410 because the homology to the pea protein was higher in at4g23430 and this protein was expressed in all tissues, whereas at4g11410 was not expressed in seeds (Fig. 4A). Therefore, at4g11410 should not be responsible for the embryo lethal phenotype we observed.
Furthermore, at4g23430 was found in the inner envelope of A. thaliana chloroplasts in a proteomic approach, whereas at4g11410 was not detectable (40). The subcellular localization of this gene product is still unknown. To our surprise, no homozygous plants could be generated, assuming that the mutation is lethal in embryonic development. This assumption was confirmed when we investigated the siliques. About 20% of the seeds of the mutant seeds were aborted. In younger siliques they had a white appearance, whereas in older siliques they looked brown and shriveled, indicating a lack of chlorophyll accumulation and thylakoid biogenesis (Fig. 4C). These aborted seeds did not germinate on sucrose-containing agar plates. Micrographs of mutant seeds supported this finding. The embryonic development in mutant seeds stopped at the level of the heart stage (Fig. 4D). So far, such a drastic phenotype for a component of the translocon has not been reported. T-DNA mutants deficient in atToc159 (ppi2 mutants) were viable on Murashigee and Skoog medium, but not on soil (55, 56). tic40 null mutants were pale and showed a reduced import rate but were viable (23), similar to antisense lines of atTic20 (29). The most severe tic20 mutants are not viable on soil (29).
Because the Tic32 null mutant has such a severe phenotype, it has to have an essential function in plastid development during embryogenesis. Given that Tic32 is tightly associated with Tic110, it is conceivable that Tic32 controls the gating of Tic110 as, for example, do
subunits of potassium channels. There, Kv
oxidoreductase activity couples Kv channel inactivation to cellular redox regulation (57). It is even more tempting to speculate about some kind of redox regulation at the inner envelope because there are other Tic components that show redox features: Tic62 and Tic55 contain a Rieske-type iron-sulfur center (25, 26). In addition, for some nuclear-encoded chloroplast proteins, regulation of gene expression by redox mechanism has been proposed (5860). Recently, the influence of light, and therefore the redox state of the chloroplast, was suggested to affect protein import in vitro (61). In the presence of light, the non-photosynthetic ferredoxin III, which is usually localized in the stroma, was mis-sorted to the inter-membrane space (61). Tic32 might be a subunit of a redoxsensing circuit that regulates the import of photosynthetic proteins into the organelle.
| FOOTNOTES |
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* This work was supported by the Deutsche Forschungsgemeinschaft. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. ![]()
|| To whom correspondence should be addressed. Tel.: 49891786-1245; Fax: 4989-1786-1185; E-mail: soll{at}uni-muenchen.de.
1 The abbreviations used are: Toc, translocon of the outer envelope of chloroplasts; Tic, translocon of the inner envelope of chloroplasts; mSSU, mature form of small subunit of Rubisco; pSSU, precursor of small subunit of Rubisco; SDR, short-chain dehydrogenase; RDH, retinol dehydrogenase. ![]()
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