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J. Biol. Chem., Vol. 279, Issue 42, 43799-43804, October 15, 2004
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From the
Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720 and the ¶Buck Institute for Age Research, Novato, California 94945
Received for publication, July 29, 2004
| ABSTRACT |
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| INTRODUCTION |
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Telomere-associated proteins are crucial for forming and maintaining the protective telomeric structure in vivo. Some telomere-associated proteins bind directly to telomeric DNA, whereas others associate with telomeres via protein-protein interactions. Among the direct telomere-binding factors is a family of Myb domain-containing proteins that specifically bind double-stranded telomeric DNA. These proteins include Rap1p in Saccharomyces cerevisiae (8), Taz1 in Schizosaccharomyces pombe (9), and TRF1 and TRF2 in mammals (1012). TRF1 reduces telomere length, whereas a dominant-negative TRF1 mutant increases telomere length when overexpressed in telomerase-positive human cells (13). These results suggest that TRF1 controls the extent to which telomerase can access and hence elongate the telomeres, presumably by modulating the telomeric structure. TRF2 is essential for t-loop formation in vitro (14) and telomere integrity in vivo (3). It has been proposed that t-loop formation by TRF2 provides a mechanism to sequester the telomeric 3'-overhang, thereby preventing its degradation and/or fusion to another telomere by DNA repair processes. Disruption of TRF2 function induces (ataxia-telangiectasia-mutated) (ATM)/p53-dependent apoptosis in human tumor cells (4) and premature senescence in normal human and mouse cells (5).
Several TRF1- and TRF2-interacting factors have been identified. TRF1 binds TIN2 (15), which is thought to mediate the effects of TRF1 on telomere length control and structure (16). TRF1 also exists in a complex with hPOT1 (17), the human ortholog of S. pombe Pot1, which binds the telomeric single-stranded 3'-overhang (18) and controls telomere length in telomerase-positive cells (17, 19). Finally, TRF1 binds TANK1 (20) and TANK2 (21), which are poly(ADP ribosyl)ases that are thought to inactivate TRF1 (22). By contrast, TRF2 interacts with hRAP1 (23), the human ortholog of scRap1p, which regulates telomere length in S. cerevisiae (24). TRF2 also interacts with proteins that participate in DNA repair, including RAD50 (25), Ku (26), and ERCC1 (27).
TIN2 interacts with TRF1 via a domain within the TRF1 homodimerization region (15), and there is no overlap between this region and the TRF1 region that binds TANK1 and TANK2 (20, 21). Consistent with being a TRF1-interacting protein, TIN2 also exists in a TRF1-hPOT complex (17). Overexpression of wild-type TIN2 slightly shortens telomeres, whereas a TIN2 mutant that binds TRF1 but lacks an N-terminal domain elongates telomeres, but both wild type and mutant function in a telomerase-dependent fashion (15, 28). In electrophoretic mobility shift assays, TIN2 is shown to form an unusually large complex with TRF1 and a telomeric DNA probe (15). These results and additional biochemical experiments (16) suggest that TIN2 mediates the telomere length control activity of TRF1 by modulating the telomeric structure.
In yeast, a single direct telomere-binding protein (Rap1p in S. cerevisiae and Taz1 in S. pombe) is the principal mediator of both telomere length and capping (9, 30), suggesting that these processes are coordinated. In mammals, however, there are two direct telomere-binding proteins, TRF1 and TRF2, which do not interact. Nonetheless, perturbations in either TRF1 or TRF2 or their associated proteins, hPOT1, hRAP1, or TIN2, influence both telomere length and capping (13, 15, 17, 23, 31), suggesting that the activities of TRF1 and TRF2 are coordinated. In addition, TRF1-deficient mouse cells show a reduction of TRF2 and TIN2 at telomeres (32), suggesting that the presence of TRF1 and TRF2 at telomeres may be coordinated.
Here we report that TIN2 also binds TRF2 and mediates its end-capping function. We show that TIN2 interacts with TRF1 and TRF2 via distinct domains and forms complexes containing TRF1- and TRF2-interacting proteins. Moreover, TIN2 mutants elicit a DNA damage response, suggesting that TIN2 complexes are important for telomere capping in addition to telomere length control.
| EXPERIMENTAL PROCEDURES |
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FLAG Affinity Purification of TIN2 ComplexesWe used PCR to add a N-terminal FLAG-epitope tag to TIN2, cloned the cDNA into the retroviral vector pLXSN, and infected and selected HT1080 cells as described previously (15). Cells (6 x 106) on 150-mm culture plates were washed with phosphate-buffered saline, and then 1 ml of lysis buffer (50 mM Tris, pH 7.5, 150 mM NaCl, 1% Nonidet P-40, 1 mM EDTA, 10% glycerol, protease inhibitor tablet (Roche Applied Science)) was added to each plate. After incubation on ice for 30 min, cells were collected by scraping and centrifugation at 4 °C, and the supernatant (cell lysate) was recovered. We incubated 10 ml of supernatant with 200 µl of anti-FLAG M2 affinity gel (Sigma) at 4 °C for 4 h. We washed the gel with lysis buffer, released bound complexes by adding 300 µl of 3x FLAG peptides (150 ng/µl in lysis buffer) at 4 °C for 30 min, and collected the supernatant by centrifugation. We repeated this procedure three times as recommended by the supplier.
Immunoprecipitation and Western AnalysesWe incubated cell lysates (300 µl) in lysis buffer with 2 µg of anti-HA1 antibody (Roche Applied Science) or 10 µg of FLAG M2 antibody (Sigma) for 2 h at 4 °C and added 50 µl of a 50% protein A-Sepharose slurry (Amersham Biosciences) for 2 h at 4 °C. We washed the immune complexes with lysis buffer and analyzed proteins by Western blotting as described previously (15, 34). Primary antibodies were mouse monoclonals (Imgenex) anti-TRF2, anti-TIN2, or anti-hRap1, rabbit polyclonal anti-HA or anti-TRF2 or monoclonal anti-HA (Santa Cruz Biotechnology), polyclonal anti-TANK (which detects both TANK1 and TANK2) (21), polyclonal anti-TIN2 (15), and polyclonal TRF1 raised against full-length TRF1.
Yeast Two-hybrid AssaysWe cloned TIN2, TIN2 mutants, TRF2, and TRF1 cDNAs into the yeast two-hybrid vectors pGBT-9, pGAD-10, pTGB-2, or pDAG-2, and vector pairs were transformed into yeast and cultured on a non-selective (TL, Trp, Leu) or selective (HTL, His, Trp, Leu) medium with or without 3-aminotriazole as described previously (15, 16).
ImmunostainingWe immunostained cells as described previously (15, 21). Briefly, we cultured cells on slide-chambers; cells were then fixed with 4% formalin, permeabilized with 0.5% Triton X-100, and stained with mouse anti-TRF2 (Imgenex), polyclonal anti-TRF1, polyclonal anti-TIN2 (15), monoclonal anti-Myc (Roche Applied Science), polyclonal anti-53BP1 (ABcam), monoclonal anti-
-H2AX (Upstate Biotechnology), or 10% goat serum as a control (Vector). After washing, we stained with secondary antibodies conjugated to Texas Red or fluorescein isothiocyanate (Molecular Probes) and counterstained the nuclei with DAPI. Telomeres were visualized by in situ hybridization using a telomeric protein nucleic acid probe as described previously (35). Where indicated, images were merged using PhotoShop (Adobe).
| RESULTS |
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TRF1 associates with the nuclear matrix and cannot be isolated in soluble form without harsh conditions (not shown) (36). We therefore overexpressed the tagged proteins and determined their interactions with soluble cellular proteins. In cells that overexpressed only FLAG-TIN2, the anti-FLAG antibody precipitated TRF2 and the TRF2-associated protein hRAP1 (Fig. 1A). The antibody did not precipitate TRF1 or the TRF1-associated proteins TANK1 and TANK2, consistent with the presence of TRF1 in the insoluble nuclear matrix fraction. However, in cells that overexpressed both FLAG-TIN2 and HA-TRF1, anti-FLAG precipitated TRF1 and the TRF1-associated proteins TANK1 and TANK2, as well as TRF2 and hRAP1 (Fig. 1A). Addition of ethidium bromide to the cell lysates did not alter these co-immunoprecipitations (not shown), indicating that they are not mediated by DNA. Together these results indicate that TIN2 may interact with TRF2 in addition to its known interaction with TRF1.
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First, we used TIN2-13 and TIN2-15 to map the TIN2 regions responsible for TRF2 binding using yeast two-hybrid analysis (38). The results showed the expected TIN2-TRF1 interaction via a central TIN2 domain (15, 16) and confirmed that TIN2 interacts with TRF2 (Fig. 1D). Moreover, the results identified the N-terminal domain of TIN2 (which is dispensable for TRF1 binding (15, 16)) as essential for TRF2 binding (Fig. 1D). Selection against weak contacts using 3-aminotriazole (38) showed that the N terminus (TIN2-15) interacts weakly with TRF2 (Fig. 1D), which we confirmed by in vitro translation and immunoprecipitation (not shown). Thus, additional TIN2 domains may influence the strength or stability of the TIN2-TRF2 complex.
To understand the interaction between TIN2 and TRF2 in vivo, we analyzed immunoprecipitates from cells expressing FLAG-TIN2 and/or HA-TRF1 (Fig. 2A). When only HA-TRF1 was expressed, anti-HA did not precipitate detectable TRF2 or TIN2, presumably because endogenous TRF1 and TIN2 are complexed with telomeres bound to the nuclear matrix (not shown) (36). However, when both HA-TRF1 and FLAG-TIN2 were expressed, anti-HA precipitated TIN2 and TRF2 (Fig. 2A, lane 6) with similar efficiencies (compare lane 6 with 9), suggesting that TRF1, TIN2, and TRF2 reside in the same complex in vivo. Immunoprecipitations from cells that express Myc-tagged TIN2-15C and HA-TRF1 show that TIN2-15C does not interact with TRF1, despite containing part of the TRF1 interaction domain (Fig. 2B). TIN2-15C, which lacks TRF1 binding, interacted with much less TRF2 than wild-type TIN2 or TIN2-14, both of which retain TRF1 binding and the N terminus (Fig. 2C, compare lanes 5, 6, and 7). This result supports the yeast two-hybrid (Fig. 1D) and in vitro immunoprecipitation (not shown) assays, both of which indicated a weak interaction between the N terminus of TIN2 and TRF2, suggesting that the TRF1-binding domain enhances or stabilizes the TIN2-TRF2 interaction. In addition, also confirming the yeast two-hybrid analyses, TIN2-13 binds TRF1 (Fig. 2B) but not TRF2 (Fig. 2C, compare lane 8 with 5 and 7), whereas TIN2-14 binds both TRF1 (15) and TRF2 (Fig. 2C, lane 7). Together these finding indicate that TIN2 binds TRF2 in vitro and in cells and that this interaction requires a TIN2 (N-terminal) domain that is distinct from the central TRF1-binding domain.
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-H2AX and 53BP1 nuclear foci (6, 7). If the TIN2-TRF2 complex is crucial for telomere function, its disruption by a mutant TIN2 protein should induce this response. To test this idea, we used lentiviruses to express Myc-tagged TIN2-15C or green fluorescent protein (GFP) (control) in normal human fibroblasts (strain BJ). The viruses use the cytomegalovirus promoter to express the transduced proteins at high levels. GFP fluorescence and anti-Myc immunostaining showed a 7080% infection efficiency (Fig. 3A). Immunostaining for
-H2AX showed that 7080% of cells in TIN2-15C but not GFP expressing cultures had prominent nuclear foci (1040 foci/nucleus) (Fig. 3B). Moreover, >95% of the TIN2-15C-positive cells were positive for
-H2AX foci (not shown). Likewise, TIN2-15C (Fig. 3C) but not GFP induced 53BP1 foci, essentially all of which coincided with
-H2AX foci (Fig. 3D), indicating that these foci were the result of a DNA damage response. Most of the 53BP1/
-H2AX foci localized to telomeres, detected by in situ hybridization using a protein-nucleic acid probe (Fig. 3E). Thus, overexpression of a TIN2 protein that binds TRF2 but not TRF1 (TIN2-15C) caused a DNA damage response at telomeres. Likewise, a TIN2 protein that binds TRF1 but not TRF2 (TIN2-13), similarly delivered and expressed, induced damage-responsive foci (Fig. 3F). However, TIN2-14, which retains both TRF1 (15, 16) and TRF2 binding (Fig. 2C), failed to induce a DNA damage response (Fig. 3F). Together, these results indicate that disruption of either the TRF1- or TRF2-binding functions of TIN2 causes telomere uncapping.
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-H2AX foci-positive and -negative BJ cells in the lenti-TIN2-15C-infected population for TRF1 and TRF2. Most (>95%) cells with 53BP1 or
-H2AX foci were devoid of focal TRF2 staining, whereas most cells that lacked 53BP1/
-H2AX foci had detectable TRF2 staining (Fig. 4A). TRF1 was also affected by TIN2-15C overexpression, albeit to a lesser extent. Only some
-H2AX-positive cells showed reduced TRF1 staining (Fig. 4B). Thus, TIN2-15C caused a telomeric damage response and reduced TRF2 and, to a lesser extent, TRF1 localization at telomeres. Likewise, TIN2-13 but not TIN2-14 reduced TRF2 immunostaining (Fig. 4C). Together, these findings indicate that TIN2 is important for telomere capping and that it requires both TRF1 and TRF2 binding to maintain functional telomeres.
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Because TRF1 is degraded on dissociation from telomeres (39), we quantified the effects of TIN2 mutants on TRF1 and TRF2 protein levels by Western blotting. TIN2-15 and TIN2-15C markedly reduced the TRF1 and TRF2 protein levels, whereas TIN2-13 had little effect (Fig. 4F). Taken together, these findings indicate that TIN2 is important for the stability and localization of both TRF1 and TRF2 at telomeres.
| DISCUSSION |
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In vitro immunoprecipitation analysis using purified TRF1, TRF2, and TIN2 proteins showed that TIN2 can interact directly with both TRF1 (15, 16) and TRF2. The majority of complexes formed in vitro were either TIN2-TRF1 or TIN2-TRF2. However, the interactions with TRF1 and TRF2 required distinct TIN2 domains. The TIN2-TRF1 interaction requires a central TIN2 domain (15, 16), whereas the TIN2-TRF2 interaction required an N-terminal TIN2 domain. This result then left open the possibility that a TIN2-TRF1-TRF2 complex may form in vivo. Indeed, in vivo immunoprecipitation experiments using lysates from cells overexpressing TRF1 and TIN2 indicated the presence of TRF1-TIN2-TRF2 complexes. Whatever the nature of the TIN2 complex in vivo, TIN2 mutants that affect TRF2 but not TRF1 binding (TIN2-15/C) disrupted telomeres by removing TRF2 and to a lesser extent TRF1, indicating an essential role for TIN2 in maintaining a functional, capped structure.
TIN2-15C interacted weakly with TRF2 in immunoprecipitation and yeast two-hybrid assays, despite strongly destabilizing TRF2 by immunostaining. This finding suggests that the TRF1-binding domain of TIN2 stabilizes the TIN2-TRF2 interaction. Expression of TIN2-15C may destabilize TRF2 at telomeres by directly titrating TRF2, in which case it is possible that only a small amount of TRF2 displacement may be sufficient for telomere dysfunction and subsequent loss and destabilization of the remaining TRF2. Alternatively, TIN215C may titrate a recently described TIN2-interacting protein, PTOP/PIP1, which interacts with the TIN2 N terminus and may affect the TIN2-TRF2 interaction (29, 40). TIN2 mutants that bind TRF1 but not TRF2 (TIN2-13) also disrupted TRF2 localization at telomeres. However, mutants (TIN2-14) that bind both TRF1 and TRF2 did not disrupt TRF2 localization at telomeres. Thus, both TRF1 and TRF2 binding were important for the telomere capping function of TIN2. Telomere uncapping by TIN2 mutants caused a senescence response in normal human cells and an apoptotic response in human tumor cells.2 Taken together with data published previously on the TIN2-TRF1 interaction, our findings suggest that TIN2 can connect the activities of TRF1 and TRF2, stabilizing their levels and localization at telomeres, and modulating their capping function.
| FOOTNOTES |
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Present address: Berlex BioSciences, 2600 Hilltop Dr., Richmond, CA 94804. ![]()
|| To whom correspondence should be addressed: Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Mailstop 84-171, Berkeley, CA 94720. Tel.: 510-486-4416; Fax: 510-486-4545; E-mail: JCAMPISI{at}LBL.GOV.
1 The abbreviations used are: HA, hemagglutinin; DAPI, 4,6-diamidino-2-phenylindole; GFP, green fluorescent protein; aa, amino acid. ![]()
2 S.-h. Kim, A. R. Davalos, and J. Campisi, manuscript in preparation. ![]()
| ACKNOWLEDGMENTS |
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