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J. Biol. Chem., Vol. 279, Issue 42, 44123-44132, October 15, 2004
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**
From the
Department of Pharmacology, University of Bern, CH-3010 Bern, Switzerland, ¶Department of Dermatology, University of Zurich, CH-8091 Zurich, Switzerland, and ||Institute of Medical Oncology, Inselspital, University of Bern, CH-3010 Bern, Switzerland
Received for publication, May 26, 2004 , and in revised form, July 16, 2004.
| ABSTRACT |
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and IFN-
induced strong tyrosine phosphorylation of STAT1 in mature but not in immature neutrophils. Functional in vitro studies suggested that IFNs act as priming factors on mature neutrophils, allowing the formation of extracellular traps upon subsequent stimulation with complement factor 5a (C5a). In contrast, both IFN-
and IFN-
had only little capacity to prime immature cells in this system. Moreover, both IFNs did not have significant anti-proliferative effects on immature neutrophils. These data contribute to our understanding regarding changes of gene expression during neutrophil differentiation and IFN-mediated anti-bacterial defense mechanisms. | INTRODUCTION |
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Although immature neutrophils can be classified by morphology as well as by the expression of more or less specific surface proteins (8), it is difficult to obtain pure cell populations characterized by a certain maturation stage. Therefore, most of the studies trying to understand neutrophil differentiation at the molecular level were performed by using cell lines derived from leukemias. Previously published work resulted in the identification of genes that may play critical roles in the differentiation of neutrophils (9). Moreover, a gene expression profile of neutrophils has been established (10). Despite these previous studies, the underlying molecular events of normal neutrophil differentiation are not well understood, and many of the genes that are expressed by mature neutrophils have not been related to function.
The objective of this study was to compare the transcriptional repertoire of immature and mature human neutrophils by using oligonucleotide microarrays. In addition we investigated whether certain differences in gene expression are reversible by in vitro re-exposure of mature neutrophils with GM-CSF. Although multiple genes were more expressed in mature compared with immature cells, it was interesting to see that mature neutrophils also demonstrated higher expression of genes, which transduce signals of type I and type II interferons. Consequently, several known IFN-responsive genes had elevated expression levels in mature compared with immature cells. The subsequently obtained functional data demonstrate the importance of increased IFN sensitivity of mature neutrophils for the formation of extracellular traps, which consist of antimicrobial agents able to kill bacteria (11).
| MATERIALS AND METHODS |
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was purchased from PBL Biomedical Laboratories (Alexis Corp., Lausen, Switzerland), and human IFN-
was from R&D Systems (Abingdon, United Kingdom). Human GM-CSF was from Novartis Pharma GmbH (Nürnberg, Germany), and human GCSF was from Aventis Pharma AG (Zurich, Switzerland). Complement factor 5a (C5a) was from Calbiochem. Fluorescein-conjugated anti-CD14 and anti-CD15 and allophycocyanin-conjugated anti-CD34 and anti-CD11b as well as phycoerythrin-conjugated anti-CD7, anti-CD16, and anti-CD36 monoclonal antibodies (mAbs) were obtained from BD Biosciences). Anti-STAT1 and anti-phospho-STAT1 (Y701) rabbit polyclonal Abs were from Cell Signaling Technology, Inc. (Bioconcept, Allschwill, Switzerland). Anti-STAT2, anti-Jak1, anti-Jak2, and anti-IFNABR-1 rabbit polyclonal Abs were from Santa Cruz Biotechnology, Inc. (LabForce AG, Nunningen, Switzerland). We obtained the following rabbit polyclonal antibodies from Fitzgerald Industries International, Inc. (Concord, MA: anti-IFNABR-2 (anti-CD118), anti-IFNGR-1 (anti-CD119), and anti-IFNGR-2 (anti-CD119). Anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mAb was ordered from Chemicon International, Inc. (Temecula, CA). Horseradish peroxidase-conjugated secondary Ab was purchased from Amersham Biosciences. Horseradish peroxidase-conjugated goat anti-rabbit IgG, Fc
-specific, was obtained from Jackson ImmunoResearch Laboratories, Milan Analytika, La Roche, Switzerland). Anti-phycoerythrin secondary Abs microbeads were from Miltenyi Biotec GmbH (Bergisch Gladbach, Germany). Phytohemagglutinin was from Roche Diagnostics. Propidium iodide and Sytox Orange were both obtained from Molecular Probes (distributed by Invitrogen). Unless stated otherwise, all other reagents were from Sigma. CellsImmature neutrophils were isolated from bone marrow aspirates with normal cellular morphology and distribution as previously described (12). Briefly, after centrifugation on a two-step discontinuous Percoll density gradient, cells were negatively isolated using anti-CD7 and anti-CD36 mAbs to eliminate contaminating lymphoid and erythroid precursors. The resulting cell population contained >97% cells of the neutrophil lineage as determined by MPO staining and analysis of lineage-associated surface proteins as well as with Diff-Quik (Medion GmbH, Düdingen, Switzerland) and light microscopy. Table I demonstrates the distribution of the different maturation stages within the immature neutrophil populations used in this study. On average we counted 15% myeloblasts, 14% promyelocytes, 36% myelocytes, 30% metamyelocytes and band cells, and 5% mature bone marrow neutrophils.
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Cell CulturesHuman immature and mature neutrophils were cultured at 1 x 106/ml in complete culture medium (RPMI 1640 containing 10% fetal calf serum) in the presence and absence of GM-CSF (50 ng/ml), G-CSF (25 ng/ml), IFN-
(500 units/ml), and IFN-
(250 units/ml) for the indicated time periods.
Gene Expression ProfilingTotal RNA was isolated using the TRIzol reagent (Invitrogen). Double-stranded cDNA was generated using a Superscript cDNA synthesis kit (Invitrogen) using an oligo(dT)24 primer containing a T7 RNA polymerase promoter at the 3' end (Microsynth, Balgach, Switzerland). Labeled cRNA was prepared from double-stranded cDNA by in vitro transcription using a T7 polymerase (MEGAscript T7 kit, Ambion (Europe) Ltd., Huntingdon, UK) in the presence of biotin-11-CTP and biotin-16-UTP (Enzo Diagnostics, Farmingdale, NY) and purified using RNeasy columns (Qiagen AG, Basle, Switzerland). 15 µg of biotinylated cRNA were fragmented and hybridized to HG-U95Av2 GeneChip® arrays (Affymetrix, Santa Clara, CA) which contain probe sets representing
12,600 human genes. Chip hybridization, washing, and staining were performed according to the Affymetrix recommended protocols. Each array was performed in triplicate.
After scanning of the probe arrays, digitalized image data were processed using Affymetrix Microarray Suite 5.0 software. In addition to determining the expression level for each gene (so called "signal"), this software assigns a "detection" call, absent (A) (not expressed), present (P) (expressed) and marginal (M) (marginally expressed) for each gene measured. The overall fluorescence intensity was scaled to a global intensity of 500 to enable the comparison between chips.
Gene Array Data AnalysisThe expression data for all genes were exported to GeneSpring 5.0 (Silicon Genetics, Redwood City, CA). The following criteria were used to select differentially expressed genes in immature versus mature neutrophils or in GM-CSF-treated versus not treated neutrophils: 1) Student's t test with a multiple testing correction (Benjamini-Hochberg) significance level p < 0.05; 2) fold-change cut-off of 4 (2 for GM-CSF treatment) in both directions; 3) the P calls had to coincide with the regulation in question, e.g. if a candidate gene were to be called "up-regulated" in mature (GM-CSF treated cells), triplicate samples in the "treated" group had to be called P, and vice versa, if a gene were to be called "down-regulated," triplicate samples in the immature (untreated) group had to have a P call. The selected differentially expressed genes were normalized to a mean of 0 and a S.D. of 1, log2-transformed, and subjected to average-linkage hierarchical clustering using the uncentered Pearson similarity matrix (14). Clustering analysis was performed using the GENE CLUSTER program, and the figures were generated with TREE VIEW program (14) (rana.lbl.gov). The selected genes were annotated using the NetAffx analysis system offered by Affymetrix (15).
Real-time PCRApproximately 1 µg of total RNA was reverse-transcribed using oligo-p(dT)15 priming and avian myeloblastosis virus reverse transcriptase (1st strand cDNA synthesis kit for reverse transcription-PCR, Roche Applied Science GmbH) at 42 °C for 1 h. PCR amplifications were carried out using HotStart system (LightCycler Faststart DNA Master SYBR Green I, Roche Applied Science) on the LightCyclerTM thermocycler as previously described (16). Primer sets used and cycling conditions are shown in Table II. PCR reactions were run in triplicate. Plasmids with IFNABR-1 and IFNABR-2 as well as IFNGR-1 and IFNGR-2 inserts were kindly provided by Dr. Silvio Hemmi, Dept. of Molecular Biology, University of Zurich, Zurich, Switzerland. Plasmids with STAT1, STAT2, Jak1, and Jak2 inserts were kind gifts from Dr. Timothy Hoey, Tularik Inc., San Francisco, CA. Serially diluted plasmids with corresponding gene inserts were used to generate the standard curve and subsequently used to calculate the number of the target molecules per sample. Results were initially expressed as the absolute copy number/µl. To compensate the variations in quantity and quality of starting mRNA, the absolute gene copy numbers/µl were normalized by the absolute GAPDH mRNA copy number/µl.
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[32P]Phosphorylation of STAT1Cells (2 x 107/ml) were preincubated for 2 h in phosphate-free medium (136 mM NaCl, 5.9 mM KCl, 1.2 mM MgSO4, 5.0 mM NaHCO3, 5.5 mM glucose, and 20 mM HEPES, pH 7.4) supplemented with 1 mCi/ml [32P]orthophosphate (Amersham Biosciences). Cells were washed and stimulated with IFN-
and IFN-
in complete culture medium for 15 min. STAT1 was subsequently immunoprecipitated as described previously (19). Because immature neutrophils had only little amounts of STAT1, we loaded three times larger volumes of immunocomplexes from immature than from mature cells on NuPage-Gels. The gels were analyzed using the imaging system Typhoon 9200 (Amersham Biosciences).
Analysis of Neutrophil Extracellular TrapsMature and immature neutrophils were seeded on poly-L-lysine 12-mm glass (BD Biosciences), allowed to settle, and then either primed with IFN-
, IFN-
, or GM-CSF for 30 min with the concentrations indicated in Cell cultures. Cells were subsequently stimulated with 10-7 M C5a for 10 min and fixed with 4% paraformaldehyde solution. RNAs were digested by addition of 1 mg/ml RNase in phosphate-buffered saline for 15 min at room temperature. For DNA detection slides were treated with 2.5 µg/ml propidium iodide. Specimens were washed with phosphate-buffered saline and mounted in a drop of anti-bleaching mounting medium (5% 1,4-diazabicyclo-[2.2.2]octane, 11% glycerol, 22% polyvinyl alcohol, 56 mM Tris-HCl, pH 9.0) and analyzed with a confocal laser scanning microscope (LSM 510, Carl Zeiss).
To quantify DNA release, neutrophils were seeded into 96-well plates (Greiner Bio-One GmbH, Frickenhausen, Germany) and stimulated under the same conditions as described above. Five µM Sytox Orange, a non cell-permeable DNA binding dye, was added (11). The plates were read using the imaging system Typhoon 9200 using a filter setting of 532 nm (excitation)/580 nm (emission) and TotalLab software (Amersham Biosciences). In addition, plates were analyzed by light microscopy and photographed.
For MPO release analysis the same protocol for cell activation was used. Released MPO was measured in the supernatants by spectroscopy (20). Briefly, 10 µl of supernatant and 10 µl of 20 mg/ml o-dianisidine were added to 155 µl of 100 mM potassium phosphate buffer, pH 6.0, containing 0.5% hexadecyltrimethylammonium bromide. The reaction was started by adding 25 µl of 2 mM hydrogen peroxide solution. Absorbance of 450 nm of visible light was measured at 37 °C for 20-30 min. MPO concentrations were calculated using an MPO standard.
Proliferation AssayProliferation of immature neutrophils was induced by GM-CSF or G-CSF in complete culture medium. As control PBMC were stimulated with 10 µg/ml phytohemagglutinin. These proliferation assays were carried out in the presence and absence of interferons (IFN-
and IFN-
). Total culture times were 72 h (immature neutrophils) and 48 h (PBMC), respectively, and pulsing the cells with 1 µCi/ml [methyl-3H]thymidine (Amersham Biosciences) was always performed for 16 h. [3H]Thymidine incorporation was measured by using a liquid scintillation counter (Wallac ADL, Hünenberg, Switzerland (21)).
Statistical AnalysisBesides the gene array data, results are expressed either as single data (usually triplicate experiments) or as the means ± S.E. for the indicated number of independent experiments. Student's t test was used to identify statistical significant differences. The calculated p values are indicated in the figures.
| RESULTS |
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3 and
4 in immature neutrophils. In contrast, the transcriptional activity of mature neutrophils apparently switched to particularly produce receptors for antibodies, chemokines, and cytokines (Table IV). As expected, CD16, a transcript associated with later stages of neutrophil differentiation, was relatively more abundant in mature as compared with immature neutrophils. In contrast, CD33, a marker of immature cells, was indeed much higher expressed in immature compared with terminally differentiated neutrophils (data not shown).
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-stimulated PBMC (23). Similarly, we found increases in tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) expression (17.3-fold) in blood neutrophils, confirming recently published work obtained in IFN-
-stimulated melanoma cells (24). Together, these data strongly suggest the activation of IFN-inducible genes during terminal neutrophil maturation. Interestingly, when we stimulated mature neutrophils with GM-CSF, a known growth factor of immature neutrophils, we observed that the expression of many of the IFN-regulated genes declined (Fig. 2B). This suggests that the induction of these genes in neutrophils may occur as a consequence of decreased GM-CSF exposure during terminal differentiation and/or following the bone marrow exit into the circulation. Because proximal and more distal elements of the IFN-signaling pathways are among these genes, it is possible that the transcript changes of the IFN-responsive genes reflect different in vivo efficacies in IFN signaling in immature and mature neutrophils. Over all, the gene expression responses of mature neutrophils toward GM-CSF revealed that 234 genes were up-regulated, and 414 were down-regulated.
We used LightCyclerTM real-time PCR to verify changes in expression detected by microarray analysis (Fig. 3). We selected eight genes known to be important for type I and type II IFN signal transduction. There was a good correlation between real-time PCR data and microarray gene expression profiles. In particular, there was not a single difference in gene expression observed by using microarray analysis that could not be confirmed by the PCR technique. Because of the higher sensitivity of the LightCyclerTM PCR, additional gene expression differences were detected that have not been seen by microarray analysis. For instance, Jak2 and IFNABR-1 were not found to be repressed in immature cells compared with mature cells using the microarray analysis (Fig. 2A and 3). In addition, we found decreased expression of IFNGR-2 and IFNABR-2 in GMCSF-stimulated mature neutrophils compared with unstimulated mature neutrophils (Fig. 2B and 3). Taken together, microarray gene expression analysis seems to be highly specific but less sensitive as compared with real-time PCR measurements.
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and IFN-
increased tyrosine phosphorylation of STAT1 within 15 min of stimulation in mature neutrophils. In contrast, both IFNs induced no or only very weak responses in immature cells, and clear increases in tyrosine phosphorylation of STAT1 were also not evident at later time points. To exclude the possibility that equal increases in phosphorylation of STAT1 occurred in both neutrophil populations but were not detectable in immature neutrophils due to very low STAT1 levels, we immunoprecipitated STAT1 after 32P-labeling of the cells. This allowed loading of larger concentrations of STAT1 on the gels, most likely resulting in a higher sensitivity for the detection of phosphorylated STAT1. However, also under these conditions and in contrast to mature neutrophils, we observed no significant increases in STAT1 phosphorylation in IFN-
-stimulated immature neutrophils (Fig. 5B). In conclusion, STAT1 occurs at lower levels and cannot efficiently be tyrosine-phosphorylated upon IFN stimulation in immature compared with mature neutrophils.
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and IFN-
, respectively, on the formation of extracellular traps in both immature and mature neutrophils. Second, we analyzed IFN effects on growth factor-induced proliferative responses in immature neutrophils.
Neutrophil extracellular traps are structurally composed of granule and nuclear constituents that disarm and kill bacteria (11). Because DNA is a major structural component of neutrophil extracellular traps, we used a propidium iodide staining procedure to make the extracellular structures visible. Priming with IFN-
or IFN-
and subsequent C5a stimulation resulted in the formation of extracellular fibers in mature but not immature neutrophil populations (Fig. 6). GM-CSF was also able to function as a priming factor in this system. In both neutrophil populations, stimulation with the cytokines or C5a alone was not followed by visible extracellular trap generation (data not shown).
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and IFN-
amplified both C5a-induced DNA (Fig. 7A) and MPO (Fig. 7B) release from mature neutrophils. In contrast, immature neutrophils did not respond with a significant DNA or MPO release upon IFN-
/C5a and IFN-
/C5a, respectively, stimulation.
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and IFN-
had only marginal effects on G-CSF- or GM-CSF-induced proliferation of immature neutrophils (Fig. 8). As a control in these assays, we used phytohemagglutinin-stimulated PBMC, which had decreased proliferative responses in the presence of IFN-
(data not shown).
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| DISCUSSION |
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Indeed, we obtained evidence for more efficient type I and type II IFN signal transduction in mature compared with immature cells. For instance, STAT1 was not only expressed at lower levels in immature neutrophils; it was also not phosphorylated on Tyr-701 (25) upon both IFN-
and IFN-
stimulation of these cells. Based on the gene expression and STAT1 phosphorylation findings, we were puzzled by two additional questions. Why do mature neutrophils, which are known to be involved in the defense against bacteria (1), require a signaling pathway(s) for IFNs that are believed to be important in anti-viral immune responses (26)? On the other hand, what is the advantage of immature neutrophils to respond to IFNs with lower efficacy?
Increased IFN(s) production has been demonstrated during bacterial infections. For instance, LPS released IFN-
, in an interleukin-12/18-dependent manner from PBMC (27), IFN-dependent genes were induced in these cells upon contact with bacteria (28), and IFN-
was generated after TLR4 activation in macrophages (29). Recently, it has been shown that activated neutrophils release granule proteins and chromatin that together form extracellular fibers able to bind both Gram-positive and -negative bacteria. These so-called neutrophil extracellular traps were able to degrade virulence factors and to kill bacteria (11).
Because IFN-
has been shown to enhance anti-fungal activities of neutrophils (30-32), we asked whether IFN-
or IFN-
might be able to help in the formation of neutrophil extracellular traps. Indeed, using two different techniques we demonstrated that IFN priming and subsequent C5a stimulation resulted in DNA release in mature but not in immature neutrophils. Similar data were obtained when we analyzed the release of MPO from azurophilic cytoplasmic granules (33) into the extracellular space, where MPO is a component of the extracellular traps (11). These data suggest that both IFN-
and IFN-
are able to participate not only in anti-fungal but also in anti-bacterial neutrophil defense mechanisms.
Treatment of patients with IFN-
(34) and IFN-
(35) is often associated with reduced leukocyte numbers, probably due to their anti-proliferative activities on bone marrow cells. In our system using immature neutrophils cultured in complete culture medium, we were able to mimic the known proliferative effects of G-CSF and GM-CSF on hematopoietic precursor cells (6, 7). Both IFNs partially blocked the cytokine-mediated proliferative responses, but this effect was not significant. In contrast, IFN-
significantly blocked proliferative responses in T cells, probably by interfering in early signaling events (36). These data suggested that, despite almost undetectable STAT1 tyrosine 701 phosphorylation, immature neutrophils are able to transduce IFN signals, but with reduced efficacy. We hypothesize at this point that a fully active IFN-signaling pathway(s) in immature neutrophils might be dangerous because patients suffering from common viral infections would carry a high risk for developing neutropenia and subsequently severe immunodeficiencies as well as for damaging the bone marrow due to the release of toxic neutrophil mediators.
There was only little interindividual variability regarding gene expression in immature and mature neutrophils. This suggested that the individuals from whom we obtained the bone marrow aspirates and the blood were indeed healthy. In contrast, when we mimicked the situation of an infectious disease condition by exposing mature neutrophils to GM-CSF in vitro, we observed dramatic changes in gene expression. This is in agreement with previously published work, which analyzed gene expression modification related to cancer and bacterial infection in blood leukocytes (37). Interestingly, it appears that the number of genes that are down-regulated as a consequence of GM-CSF exposure is greater than the number of induced genes.
We investigated gene expression profiles between human immature bone marrow neutrophils and human mature blood neutrophils. A similar analysis in specific immature neutrophil subsets would be of great interest but is hampered by the non-availability of suitable purification techniques. Highly purified cell populations would be required to precisely detect the exact time periods of expression of individual genes. Although we used a mixture of immature neutrophils, gene expression profiles demonstrated only little variability among different donors. It is possible that the inter-individually variability is higher under in vivo pathologic conditions. Therefore, further work is required to compare gene expression pattern between normal and infectious diseases blood neutrophils (e.g. cystic fibrosis, sepsis).
| FOOTNOTES |
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Both authors contributed equally to this work. ![]()
** To whom correspondence should be addressed: Dept. of Pharmacology, University of Bern, Friedbühlstrasse 49, CH-3010 Bern, Switzerland. Tel.: 41-31-632-3281; Fax: 41-31-632-4992; E-mail: hus{at}pki.unibe.ch.
1 The abbreviations used are: G-CSF, granulocyte colony-stimulating factor; GM-CSF, granulocyte/macrophage colony-stimulating factor; C5a, complement factor 5a; GAPDH, glyceraldehyde-3-phosphate dehydrogenase; IFN, interferon; Jak, Janus kinase; MPO, myeloperoxidase; PBMC, peripheral blood mononuclear cells; STAT, signal transducer and activator of transcription; Ab, antibody; mAb, monoclonal Ab. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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