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J. Biol. Chem., Vol. 279, Issue 45, 46715-46722, November 5, 2004
Activation State of the Ras2 Protein and Glucose-induced Signaling in Saccharomyces cerevisiae*![]() ![]() ![]() ||
From the
Received for publication, May 10, 2004 , and in revised form, August 24, 2004.
The activity of adenylate cyclase in the yeast Saccharomyces cerevisiae is controlled by two G-protein systems, the Ras proteins and the G protein Gpa2. Glucose activation of cAMP synthesis is thought to be mediated by Gpa2 and its G-protein-coupled receptor Gpr1. Using a sensitive GTP-loading assay for Ras2 we demonstrate that glucose addition also triggers a fast increase in the GTP loading state of Ras2 concomitant with the glucose-induced increase in cAMP. This increase is severely delayed in a strain lacking Cdc25, the guanine nucleotide exchange factor for Ras proteins. Deletion of the Ras-GAPs IRA2 (alone or with IRA1) or the presence of RAS2Val19 allele causes constitutively high Ras GTP loading that no longer increases upon glucose addition. The glucose-induced increase in Ras2 GTP-loading is not dependent on Gpr1 or Gpa2. Deletion of these proteins causes higher GTP loading indicating that the two G-protein systems might directly or indirectly interact. Because deletion of GPR1 or GPA2 reduces the glucose-induced cAMP increase the observed enhancement of Ras2 GTP loading is not sufficient for full stimulation of cAMP synthesis. Glucose phosphorylation by glucokinase or the hexokinases is required for glucose-induced Ras2 GTP loading. These results indicate that glucose phosphorylation might sustain activation of cAMP synthesis by enhancing Ras2 GTP loading likely through inhibition of the Ira proteins. Strains with reduced feedback inhibition on cAMP synthesis also display elevated basal and induced Ras2 GTP loading consistent with the Ras2 protein acting as a target of the feedback-inhibition mechanism.
In Saccharomyces cerevisiae the addition of glucose or other rapidly fermentable sugars to derepressed cells (carbon-starved or growing on a non-fermentable carbon source) triggers a remarkable variety of regulatory phenomena, including many rapid changes at the post-translational and transcriptional level. Several signaling pathways are activated by glucose. One of the best studied pathways is the cAMP/PKA1 pathway. The main component of this signaling transduction pathway is adenylate cyclase, which catalyzes the synthesis of cAMP. In S. cerevisiae adenylate cyclase activity is controlled by the Ras proteins. These proteins are members of the small GTPase superfamily, which are active in the GTP-bound form and inactive in the GDP-bound form. Recently it has been demonstrated that in S. cerevisiae adenylate cyclase activity is also controlled by a heterotrimeric G -protein, Gpa2 (1). A G-protein-coupled receptor, Gpr1, has been identified to be responsible for activation of the Gpa2 protein (24). Two triggers are known to activate the cAMP/PKA pathway: the addition of glucose to derepressed cells and intracellular acidification. The Gpr1/Gpa2 G-protein-coupled receptor system is only required for glucose activation of cAMP synthesis (2, 5). The results reported in the literature about the role played by the Ras proteins in activation of cAMP synthesis are in part contradictory. Colombo et al. (5) showed that intracellular acidification (but not glucose) caused an increase in the GTP/GDP ratio on the Ras proteins, suggesting that only intracellular acidification would stimulate cAMP synthesis through activation of the Ras proteins. Other data reported by Rudoni et al. (6) using another assay show that the addition of glucose to glucose-starved cells also causes a fast increase of the Ras2-GTP level. Two different assays have been used to analyze quantitatively the guanine nucleotides bound to the Ras proteins in vivo. The first assay was developed by Gibbs et al. (7) and used by Colombo et al. (5). After labeling the cells in vivo with [32P]orthophosphate, the Ras proteins were immunoprecipitated with antibodies against the human Ras protein (v-H-ras 259). Guanine nucleotides were extracted, separated by TLC, and quantitated by phosphorimager technology. With this assay, the GTP/GDP ratio on the yeast Ras proteins could be measured only after overexpression of Ras2 protein indicating that the sensitivity of this assay is probably not very high. A more recent assay to analyze quantitatively the guanine nucleotides bound to the Ras proteins in vivo was described by Taylor and Shalloway (8) and exploits the known specificity of the interaction between Ras-GTP and the Ras-binding domain (RBD) of Raf-1 to detect activated Ras. Because there is a high degree of homology between yeast and mammalian Ras proteins, the yeast Ras proteins are able to interact with the RBD of Raf-1. As a result the assay could be used successfully by Rudoni et al. (6) to measure the GTP loading on yeast Ras2 without overexpression of this protein. In this work we have used the highly sensitive non-radioisotopic pull-down assay for Ras2 GTP loading to study the requirements for the rapid glucose enhancement of GTP loading. We show that it is dependent on Cdc25 and that deletion of the Ira proteins causes constitutively high GTP loading. Remarkably, also deletion of GPR1 or GPA2 enhances basal and induced Ras2 GTP loading. It is known that glucose phosphorylation by glucokinase or the hexokinases is required for glucose-induced cAMP signaling (9, 10). This glucose phosphorylation requirement can also be fulfilled in a glucose transport deficient strain by provision of intracellular maltose (11). We show that glucose-induced Ras2 GTP loading is dependent on precisely the same requirements indicating that glucose phosphorylation probably acts through Ras to sustain cAMP signaling. Finally we provide evidence that the Ras proteins might be a target for the stringent feedback inhibition of PKA on cAMP synthesis.
Strains and Growth ConditionsThe yeast strains used in this study are indicated in Table I. Cells were grown in 1% (w/v) yeast extract, 2% (w/v) Bacto-peptone (YP) supplemented with either 3% (w/v) glycerol, 0.1% (w/v) glucose and 50 mg/liter adenine, or 2% (w/v) glucose and 50 mg/liter adenine (YPDA). Strains carrying a plasmid were grown in minimal media that contained 0.67% (w/v) yeast nitrogen base without amino acids, 3% (w/v) glycerol, 0.1% (w/v) glucose, and the required supplements (50 mg/liter).
Strain KP-JW21b (hxk1::HIS3 hxk2::LEU2 glk1::LEU2 ira2::URA3) was obtained by Katrien Pardons (Katholieke Universiteit Leuven) via crossing of strain YSH757 (hxk1::HIS3 hxk2::LEU2 glk1::LEU2) with strain PM903 (ira1::URA3 ira2::URA3). Deletions in HXK1, HXK2, GLK1, and IRA2 genes were checked by PCR. Strains W3031A (YCpRAS2) and W3031A (YCpRAS2Val19) were obtained by transforming strain W3031A with plasmids YCpRAS2 and YCpRAS2Val19 (12).
Determination of the Ras2-GTP/Total Ras2 Ratio in VivoDetermination of the ratio Ras2-GTP/total Ras2 was performed essentially as described by Taylor and Shalloway (8) with some modification (6). This assay exploits the known specificity of the interaction between Ras-GTP and the RBD of Raf-1 to detect activated Ras. Cells were collected by centrifugation and resuspended in 25 mM MES buffer, pH 6, (108 cells/ml) for about 20 min. At time 0 glucose or DNP was added, and samples were collected by filtration on nitrocellulose filters. After the addition of ice-cold lysis buffer (25 mM HEPES, pH 7.5, 150 mM NaCl, 1% (w/v) Nonidet P-40, 0.25% (w/v) sodium deoxycholate, 10% (w/v) glycerol, 25 mM NaF, 10 mM MgCl2, 1 mM EDTA, 1 mM sodium vanadate, one tablet of Protease Inhibitor Mixture from Roche Applied Science in 50 ml of extraction medium), cells were disrupted with glass beads in a Fastprep instrument. Cleared supernatant (containing 200 µg of total protein) was incubated with 20 µl of bed volume of glutathione S-transferase (GST)-RBD fusion protein pre-bound to glutathione-Sepharose for 1 h at 4 °C. The GST·RBD fusion protein was prepared using the expression vector pGEX2T-RBD, which encodes amino acids 1149 of Raf-1 fused to GST. This plasmid was kindly provided by A. Wittinghofer (Max-Planck Institute, Dortmund, Germany). The expression of GST·RBD fusion protein in Escherichia coli was induced with 0.1 mM isopropyl 1-thio- All experiments were done in triplicate, and error bars are reported in the figures. In our experimental conditions anti-Ras2 antibodies recognize in a specific way yeast Ras2 protein as shown in Fig. 1A because no signal was detected in strains bearing a RAS2 deletion.
For evaluation of the reliability of the assay we set up conditions to load purified Ras2 protein specifically either with GTP or with GDP. For this purpose 1 µg of purified Ras2 protein (13) was incubated at room temperature for 30 min in 150 µl of phosphate-buffered saline 1x (containing one tablet of Protease Inhibitor Mixture in 50 ml of buffer) in the presence of 5 mM EDTA and either 1 mM GTP or 1 mM GDP. The removal of Mg2+ by EDTA partially unfolds the protein and induces an open conformation enhancing the binding of either GTP or GDP. Immediately after incubation, an excess amount of MgCl2 (20 mM) was added to refold the Ras2 protein so that the nucleotide was locked in the protein. Both these fractions were incubated with GST·RBD fusion protein pre-bound to glutathione-Sepharose for 1 h at 4 °C. Bound proteins were eluted with 2x SDS-sample buffer, separated by SDS-PAGE, blotted onto nitrocellulose, immunodecorated with anti-Ras2 polyclonal antibodies (SC-6759, Santa Cruz Biotechnology), and revealed with the ECL Western blotting analysis system (Amersham Biosciences). Total Ras2 protein (bound either to GTP or to GDP) was detected by Western blotting using the same anti-Ras2 antibodies. Only the activated form of Ras2 was able to bind to the resin (Fig. 1B) indicating that the assay is specific for Ras2-GTP.
Overexpression of Ras2 Abolishes Glucose-induced GTP Loading on Ras2We previously reported an increase in the GTP-loading state of Ras after intracellular acidification with the protonophore 2,4 dinitrophenol using a method based on in vivo labeling of strains overexpressing Ras2. This method, however, did not revealed a glucose-induced increase in Ras GTP loading (5). More recently, we adopted the more sensitive Ras-GTP/Raf interaction assay, and this allowed us to demonstrate a rapid activation of Ras2 upon the addition of glucose to glucose-starved cells (6). We now show, using the more sensitive assay, that the overexpression of Ras2 abolished the glucose-induced increase in Ras2-GTP and delays the increase triggered by intracellular acidification (Fig. 2B), whereas a fast increase was obtained in a wild-type W3031A strain after the addition of glucose (Fig. 2, A, C, and D) or 2,4 dinitrophenol (Fig. 2A). This provides an explanation for the discrepancy between the results of our two previous studies and confirms the results reported by Rudoni et al. (6) performed with a different wild type strain. The inset of Fig. 2B shows a Western blot giving a rough evaluation of the Ras2 overexpression in W303 (YepRAS2); from this data a 15-fold increase was calculated in comparison with the wild type W3031A.
Addition of Glucose Enhances the Ras2-GTP Level and the Rapid Increase Is Dependent on Cdc25Because the addition of glucose triggered a rapid increase in the Ras2-GTP level we have evaluated whether this increase was dependent on Cdc25, the main GDP/GTP exchange factor for Ras in yeast. The addition of 100 mM glucose to derepressed cells of a strain deleted for CDC25 and rescued by overexpression of TPK1 did not show the rapid increase in the Ras2-GTP/total Ras2 ratio (Fig. 3). The Ras2 GTP loading state increased slowly to a level similar to that of the wild type strain. Hence, Cdc25 is required for the rapid increase. It is also evident that TPK1 overexpression has a negative effect on Ras2 GTP loading. This could be due to a feedback caused by high PKA activity and suggests (as reported later) that Ras2 is a possible target of the feedback inhibition.
Ira1 and Ira2 Negatively Regulate the Ras2 Protein Activation State and Are Required for the Glucose-induced Increase in Ras2 GTP LoadingTanaka et al. (14) reported that in ira mutants the Ras2 proteins accumulate in the GTP-bound form, whereas in the wild type strain these proteins were found mostly in the GDP-bound form, indicating that Ira1 and Ira2 negatively regulate the level of Ras-GTP. Our results with the new assay confirm these conclusions. In a strain containing only the wild type IRA2 gene (ira1 ) the initial Ras2-GTP/total Ras2 ratio was about 3 times higher compared with wild type cells. However, the ratio still increased after the addition of glucose (Fig. 4A). In a strain containing only the IRA1 gene (ira2 ) the initial ratio was about 6 times higher than in the wild type strain indicating that Ira2 plays a prominent role in controlling the basal Ras2 GTP loading state. In addition, this strain did not show any further glucose-induced increase in Ras2 GTP loading (Fig. 4A). A similar result was obtained for the ira1 ira2 strain indicating that the Ira proteins (and mainly Ira2) are essential to obtain a normal glucose-induced increase in Ras2 GTP loading probably because the inhibition or deletion of these GTPases already triggers a maximal GTP loading before the addition of the sugar.
To confirm the importance of Ras-GTPase activating capacity and/or guanine nucleotide exchange capacity for the glucose-induced increase in Ras-GTP loading we used a strain expressing the RAS2Val19 dominant allele. This allele has strongly reduced GTPase activity, is insensitive to the Ira proteins, and is also independent of the guanine nucleotide exchange factors Cdc25 and Sdc25. The results obtained were similar to those for the ira1 ira2 strain. The basal level of Ras2 GTP loading was high, and there was no further glucose-induced increase (Fig. 4B). This effect was specific for RAS2Val19 because a similar experiment with a strain bearing the normal RAS2 gene in the same centromeric vector (YCpRAS2) gave a response practically identical to a wild type (Fig. 4B); however in this case the level of Ras2 overexpression was about 2-fold as shown also in Fig. 1A, lane 2).
Role of the Gpr1-Gpa2 G-protein-coupled Receptor (GPCR) System in Regulation of the Ras2 Protein Activation State Because the G-protein-coupled receptor Gpr1 and its G
It has been demonstrated that the glucose-induced increase in cAMP is dependent on two mechanisms: a glucose-phosphorylation dependent mechanism, which is already stimulated by low glucose levels of a few millimolars, and the GPCR-dependent mechanism, which is only triggered by high glucose levels (20100 mM) (11). To determine the effect of the glucose concentration on Ras2 GTP loading, we have measured the Ras2 activation state during sequential addition of a low (5 mM) glucose concentration followed 3.5 min later by a high (100 mM) glucose concentration. Fig. 5B shows that addition of 5 mM glucose did not trigger a detectable increase in Ras2-GTP in the wild type strain. However, in the gpr1 and gpa2 strains an increase was observed (Fig. 5B), consistent with the previous observation that the absence of Gpr1 or Gpa2 facilitates Ras activation. Subsequent addition of 100 mM glucose triggered in all strains a further increase in Ras2 GTP; this increase was again more pronounced in gpr1 and gpa2 strains.
Glucose Activation of Ras2 Is Dependent on Active Sugar KinasesIn S. cerevisiae glucose phosphorylation is mediated by three isoenzymes. The hexokinases Hxk1 and Hxk2 phosphorylate glucose as well as fructose (15), whereas the glucokinase Glk1 can only phosphorylate glucose (16). Any one of the three isoenzymes can sustain glucose-induced cAMP signaling, whereas specifically one of the two hexokinases is required for fructose-induced cAMP signaling (9, 10). We have investigated the requirement for glucose phosphorylation using a strain lacking the three sugar kinases (hxk1
Glucose-induced Activation of Ras2 in a Glucose Transport-deficient StrainRecent data have shown that the two essential requirements for glucose-induced activation of cAMP synthesis can be fulfilled separately: the extracellular glucose detection by the GPCR system and the intracellular sugarsensing process requiring the hexose kinases (10, 11). Addition of a low concentration of maltose (0.7 mM), which provides intracellular glucose in the absence of glucose transport, to cells of a strain lacking all physiologically important glucose carriers (HXT17, GAL2) did not increase the cAMP level by itself. However, it provided enough glucose phosphorylation to sustain the activation of cAMP synthesis by a high external glucose level through the Gpr1/Gpa2 GPCR system. Fig. 7 shows that in a glucose-transport deficient strain the rapid glucose-induced increase in Ras2-GTP was largely absent. This is in agreement with the requirement for active glucose phosphorylation because the latter normally requires glucose transport. The small remaining increase in Ras2-GTP is consistent with the small remaining increase in glucose 6-phosphate previously observed in the glucose transport deficient strain (10, 11). It is apparently sustained by the very low level of residual glucose transport in this strain, but it is unable to support cAMP signaling. Deletion of GPR1 or GPA2 in the glucose transport-deficient strain also enhanced the basal level of Ras2-GTP in agreement with the previous observation that the GPCR system negatively affects Ras2 GTP loading. There was no further glucose-induced increase in the Ras2-GTP level, which can be explained by the absence of glucose transport and sufficient glucose phosphorylation.
Ras2 Is a Possible Target of the Feedback-inhibition MechanismcAMP accumulation in yeast is under strong feedback inhibition by protein kinase A (17, 18). The only target conclusively identified so far is the low-affinity cAMP phosphodiesterase Pde1 (19). To evaluate whether the feedback-inhibition mechanism on cAMP accumulation by PKA acts by changing the Ras2 protein activation state, we measured the Ras2-GTP/total Ras2 ratio in a strain with reduced feedback inhibition (tpk1w1 tpk2 tpk3 ). The initial Ras2-GTP level was about 3 times higher compared with that in wild type cells, and the Ras2-GTP level further increased after the addition of glucose (Fig. 8). These results indicate that PKA down-regulates the Ras2 GTP-loading state. Deletion of GPA2 gene did not prevent the increase in the basal level of Ras2-GTP or the glucose-induced increase. This confirms that the glucose-induced increase in Ras2-GTP does not require the GPCR system and is apparently only triggered by the glucose phosphorylation-dependent system.
Involvement of Ras in Glucose-induced cAMP Signaling The first evidence for involvement of the Ras proteins in cAMP signaling was provided by Broek et al. (20), Toda et al. (21), and Mbonyi et al. (22). Subsequent work also supported a requirement of CDC25 in glucose-induced cAMP signaling (2326). The involvement of Ras in glucose-induced cAMP signaling was further supported by the inability of a Ras mutant allele that lacked lipid modification and therefore plasma membrane attachment to mediate glucose-induced cAMP signaling although the allele could support a basal cAMP level high enough for growth (27, 28). After Colombo et al. (5) showed that only intracellular acidification and not glucose caused an increase in the GTP content on the Ras proteins, attention re-focused on the Gpa2 protein and its G-protein-coupled receptor Gpr1 as a glucose-sensing module required for activation of cAMP synthesis. The latter, however, did not explain the many previous results supporting a role for the Cdc25-Ras module in glucose-induced cAMP signaling. Moreover, Rudoni et al. (6) have recently been able to detect a glucose-induced increase in the Ras2-GTP content with a more sensitive assay. Our present results reconcile the discrepancies between the previous findings. Using the more sensitive assay for the Ras2 GTP detection we show that glucose addition rapidly enhances Ras2-GTP. We confirm that intracellular acidification enhances the GTP loading on Ras. Moreover we show that overexpression of Ras2 delays the increase caused by intracellular acidification and abolishes the increase triggered by glucose. This explains the inability of Colombo et al. (5) to detect an increase in the GTP/GDP ratio on Ras2 because they necessarily had to use Ras2 overexpression strains to be able to measure the GTP and GDP load on Ras2 because of the lower sensitivity of the method. The strong Ras2 overexpression (up to 15-fold) could impair the glucose responding mechanism in different ways. Whereas the ratio Ras2-GTP/total Ras2 was comparable with that found in the wild type strain, the absolute amount of Ras2-GTP was very high, with a 1015-fold increase; therefore the pathway is overstimulated and no additional increase of Ras2-GTP can be induced by glucose, or the high amount of Ras2-GTP can inhibit any additional Ras2-GTP increase. Alternatively the overexpression of Ras2 dilutes the amount available for stimulation and therefore reduces the glucose-induced Ras2-GTP increase to below the detection limit. Another explanation is that overexpression of Ras2 causes mislocalization of the protein with inaccessibility to the activation mechanism as a result. Immunofluorescence staining, however, showed that in the strain overexpressing Ras2 the protein was localized mainly at the plasma membrane (results not shown). In conclusion, the glucose-induced stimulation of cAMP synthesis is apparently mediated by the two G-proteins, Ras2 and Gpa2, raising the question as to the mechanisms involved in glucose activation of Ras.
Mechanism of Glucose Activation of RasYeast Ras activation is controlled by the guanine nucleotide exchange proteins Cdc25 and Sdc25 of which the former plays a major role (29). We show that deletion of CDC25 severely delays the glucose-induced increase in Ras2-GTP consistent with a requirement of Cdc25. The slow residual increase might be mediated by Sdc25. This result opens the possibility that Cdc25 would act as a signal mediator for glucose-induced activation of Ras. On the other hand, also in case the glucose signal would arrive on the Ira proteins, causing their inhibition, a requirement for Cdc25 as GDP/GTP exchange stimulator could be expected. Deletion of the IRA genes, and in particular the IRA2 gene, caused a conspicuous increase in the basal level of Ras2-GTP. This is consistent with previous results obtained by Tanaka et al. (14) revealing a role for the Ira proteins as Ras-GTPase activating proteins. As opposed to the results of Tanaka et al. (14), however, which were obtained with strains overexpressing Ras2, our results were obtained with strains displaying regular Ras2 expression. More importantly, the ira2
Despite the discovery of the Gpr1-Gpa2 glucose-sensing GPCR module, it has been firmly established that glucose activation by this module is also strictly dependent on glucose phosphorylation (10, 11). It is awkward that a ligand of a GPCR system has to be transported and modified in metabolism before the same ligand can activate the effector system through its GPCR system. It is unclear how glucose phosphorylation primes adenylate cyclase for activation by the GPCR system. Our present results might lead to an answer to this question. The glucose-induced increase in Ras2-GTP was absent in a glucose phosphorylation-deficient strain (hxk1 Feedback Inhibition of Adenylate CyclaseColombo et al. (5) were unable to detect an increase in the GTP content on Ras in a strain with reduced feedback inhibition. This might be because of the same technical problem of the assay as discussed previously because with the current assay a significant increase in the basal level of Ras2-GTP was detected in a PKA-attenuated strain. Importantly, also the glucose-induced increase in Ras2-GTP was prominently present making it unlikely that the latter is caused by reduction of the feedback inhibition. Deletion of GPA2 did not affect the basal level of Ras2-GTP nor the glucose-induced increase indicating that the feedback inhibition proceeds independently from the GPCR module. Although the Ras proteins have been suggested as a target of the feedback inhibition the proposed mechanism, phosphorylation-induced reduction of adenylate cyclase interaction, did not involve changes in the GTP/GDP content of Ras (33). Cdc25 has also been proposed as a target of the feedback-inhibition mechanism. It is phosphorylated in response to glucose, and this reduces its accessibility to Ras (34). A mutation in the Cdc25 C terminus was identified that reduces feedback inhibition after glucose-induced stimulation of cAMP synthesis (25). The Ira proteins have also been suggested as possible targets of the feedback-inhibition mechanism (35), but this has not been substantiated further. Although the Cdc25 and Ira proteins are the most likely candidates for the feedback-inhibition mechanism to explain the increased Ras2-GTP content in a PKA-attenuated strain, it cannot be excluded that modification of adenylate cyclase would affect the Ras2-GTP loading state. Actually, deletion of GPA2 or GPR1 also enhanced the Ras2-GTP level although not as pronounced as in the PKA-attenuated strain. Because deletion of GPA2 in the PKA-attenuated strain did not further enhance the basal Ras2-GTP content its effect on the Ras2-GTP level might be related to the feedback-inhibition mechanism.
* This work was supported by grant Fondo Agevolazioni alla Ricera, ex 60% (FAR) (to E. M.) and by grants from the Fund for Scientific Research-Flanders (to J. W. and J. M. T.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. || To whom correspondence should be addressed. Tel.: 39-02-64483533; Fax: 39-02-64483565; E-mail: Enzo.Martegani{at}unimib.it.
1 The abbreviations used are: PKA, protein kinase A; RBD, Ras-binding domain; MES, 4-morpholinoethanesulfonic acid; GST, glutathione S-transferase; GPCR, G-protein-coupled receptor.
We thank A. Wittinghofer for providing the expression vector for the production of GST-RBD and Katrien Pardons (Katholieke Universiteit Leuven) for providing strain glk1::LEU2 hxk1::HIS3 hxk2::LEU2 ira2::URA3.
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