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J. Biol. Chem., Vol. 279, Issue 46, 48071-48078, November 12, 2004
Biochemical and Biological Characterization of a Novel Anti-aromatase Coumarin Derivative*![]() From the Department of Surgical Research and Division of Informational Sciences, Beckman Research Institute of the City of Hope, Duarte, California 91010
Received for publication, June 18, 2004 , and in revised form, September 2, 2004.
Estrogen stimulates the proliferation of estrogen receptor (ER)-positive breast cancer cells. Aromatase is the enzyme responsible for the conversion of androgens into estrogens, and synthetic aromatase inhibitors such as letrozole, anastrozole, and exemestane have proven to be effective endocrine regimens for ER-positive breast cancer. In a recent study, we have found that 4-benzyl-3-(4'-chlorophenyl)-7-methoxycoumarin is a potent competitive inhibitor of aromatase with respect to the androgen substrate. Its Ki value was determined to be 84 nM, significantly more potent than several known aromatase inhibitors. The specific interaction of this compound with aromatase was further demonstrated by the reduction of its binding by several mutations at the active site region of aromatase and evaluated by computer modeling analysis. The structure-activity studies have revealed that three functional groups (i.e. 3-(4'-chlorophenyl), 4-benzyl, and 7-methoxyl) of this coumarin are important in its inhibition of aromatase. In addition, through a matrigel thread three-dimensional cell culture, this compound was shown to behave like known aromatase inhibitors that suppress the proliferation of aromatase and estrogen receptor positive MCF-7aro breast cancer cells. This coumarin has been shown not to be cytotoxic at up to 40 µM. It was found not to be an inhibitor of steroid 5 -reductase that also utilizes androgen as the substrate and not to be a ligand of ER , ER , estrogen-related receptors, or androgen receptor. These results demonstrate that coumarins (a common type of phytochemical) or their derivatives can be potent inhibitors of aromatase and may be useful in suppressing aromataseand ER-positive breast tumors.
Phytochemicals are powerful food factors, found in fruits, vegetables, herbs, and other whole foods, that elicit profound effects on our health. The research into how phytochemicals work and the role they play in human bodies is expanding rapidly. A significant number of phytochemicals have been found to interact with enzymes and nuclear receptors in specific manners, leading to the modulation of selective physiological mechanisms. For example, genistein in soybeans is known to be an agonist of estrogen receptor (ER)1 (1), thus, this chemical is thought to compete with estrogen for binding to ER. Furthermore, (-)-epigallocatechin-3-gallate in green tea has been recently reported to be an inhibitor of 5-cytosine DNA methyltransferase (2). It was predicted that (-)-epigallocatechin-3-gallate could prevent or reverse gene silencing by suppressing DNA methylation. In our laboratory, several flavones have been demonstrated to be effective inhibitors of aromatase (estrogen synthetase) (3) and NADPH:quinone reductase 1 and 2 (46). These enzymes play important roles in mammary carcinogenesis. Recently, isoflavones and flavones have also been shown to be agonists of estrogen-related receptors (ERRs) (7); therefore, these chemicals can modulate the biological activity of these receptors. Furthermore, we have isolated and identified procyanidin B dimers from red wine and grape seeds that act as competitive inhibitors of aromatase, and oral intake of these chemicals suppresses the growth of aromatase-mediated breast tumors in nude mice (8). Coumarins are a major type of phytochemicals, and the therapeutic potential of several coumarins have been discussed (9). Furthermore, several coumarin derivatives have been reported to be steroid sulfatase inhibitors and evaluated for breast cancer therapy (10, 11). However, the interaction between coumarins and aromatase has not yet been reported.
Aromatase, a cytochrome P450, is the enzyme that synthesizes estrogens by converting C19 androgens (androstenedione and testosterone) to aromatic C18 estrogenic steroids (estrone and 17 In this study, we have examined 21 coumarin derivatives and found 4-benzyl-3-(4'-chlorophenyl)-7-methoxycoumarin to be a potent competitive inhibitor of aromatase with respect to the androgen substrate. Its Ki value was estimated to be 84 nM, which is significantly lower than several well characterized anti-aromatase phytochemicals. Biochemical properties and biological action of this newly identified aromatase inhibitor have been examined.
MaterialsWe have examined the interaction of 21 coumarins with aromatase. The names of these compounds are shown in Table I. These coumarins were purchased from Indofine Chemical Co., Inc. (Somerville, New Jersey). A stable aromatase-expressing the estrogen receptor-positive MCF-7 line (i.e. MCF-7aro) has been prepared in our laboratory by aromatase cDNA transfection and G418 (neomycin) selection (19) and was used in this study. Aromatase activity in the MCF-7aro cell line was determined to be 73 ± 6 pmol/mg/h. MCF-7aro cells were cultured in RPMI medium containing 10% fetal bovine serum (Invitrogen), 1x antibiotics, 1 mM sodium pyruvate, 2 mM L-glutamine, and 15 mM Hepes at 37 °C and 5% CO2. Aromatase wild-type and mutant expressing Chinese hamster ovary cell lines were prepared in our laboratory (2022). Briefly, the wild-type aromatase and its mutants were cloned in pH -Apr-1-Neo, and the expression plasmids were transfected into Chinese hamster ovary cells, using the Lipofectin transfection reagent (Invitrogen). Cells expressing the enzyme or its mutants were selected with G418 (up to a final dosage at 680 µg/ml). The expression of the aromatase protein was determined by aromatase activity measurement and by immunoprecipitation analysis. The latter analysis was performed using polyclonal antisera against aromatase that was prepared by Kao et al. (21).
For cell proliferation studies, [methyl-3H]thymidine (20 Ci/mmol) was purchased from PerkinElmer Life Sciences. Dimethysulfoxide, tamoxifen, 17 -estradiol, and 4-androstene-3,17-dione were obtained from Sigma Chemical Co. The anti-estrogen, ICI 182780, was purchased from Tocris Cookson Inc. (Ellisville, MO). The aromatase inhibitors, letrozole and anastrozole, were provided by Dr. A. S. Bhatnager at Novartis, Switzerland, and Dr. Michael Dukes at Zeneca Pharmaceuticals, UK, respectively. The phenol red-free matrigel basement membrane matrix was purchased from Fisher Scientific Co.
Aromatase Assay, Placental Microsomal Assay, and In-cell Assay Using a human placental microsomal preparation that is enriched with aromatase, aromatase activities (in the presence of various coumarins at five different concentrations) were determined by the tritiated water release method of Thompson and Siiteri (23), with [1
In the "in-cell" aromatase assay, aromatase-expressing cells were plated on 6-well plates in growth medium. When approximately confluent, the cells were washed twice with phosphate-buffered saline and 1 ml of serum-free medium containing inhibitor at various concentrations along with 100 nM [1 The tritiated water release assay has been previously validated in our laboratory by the product isolation assay (25). In addition, the activities of the wild-type aromatase and its mutants have been recently evaluated by the reaction intermediate profile analysis along with the tritiated water release assay (22).
Mammalian Cell Transfection and Luciferase AssaysThe expression plasmid for the human ERR HeLa cells were cultured in minimal essential medium Earle's salts medium and supplemented with a solution of 5% charcoal-dextran-treated fetal bovine serum for 24 h. Afterward, the cells were transfected with 3 µg of Lipofectin and a total 0.75 µg of plasmid DNA containing various amounts of the test plasmids as indicated in each experiment and appropriate amounts of empty vector, pSG5, to maintain the same overall amount of total DNA in all transfections. After 5 h of incubation, the medium containing Lipofectin and DNA was removed, and the cells were cultured in the 5% charcoal-treated fetal bovine serum containing growth medium with or without ligands. Twenty-four hours after transfection, the cells in each well were lysed in 400 µl of 1x lysis buffer and harvested from the plates by scraping. The luciferase activities in the cell lysate with the same amount of protein were then measured according to the manufacturer's instructions (Promega). Each experiment was repeated at least three independent times, and each sample was tested in triplicate. Computer ModelingTo rationalize our experimental results, we superimposed the five coumarins demonstrating the most potent anti-aromatase activity with the natural substrate of aromatase, androstenedione, using the Sybyl FlexS program version 1.10 (30) interfaced with Tripos Sybyl 6.9 (Tripos, Inc., St. Louis, MO) on a Silicon Graphics O2+ work station with the IRIX 6.5 operating system (31). The goal for the alignments is to find three-dimensional structural characteristics that confer biological activity. FlexS makes use of an incremental construction algorithm. The reference molecule is kept rigid, whereas the ligands to be superimposed are treated as flexible. The first step involves breaking the reference and test ligands down into small rigid fragments, followed by the selection of a core fragment from each ligand. The program aligns these core fragments, and then the remaining fragments are added iteratively. At each step, flexibility is considered by allowing the newly added fragment to adopt a discrete set of conformations. The volume overlap with the reference is checked, and a similarity ranking is performed to score the achieved similarity in three-dimensional space. The FlexS scoring function is based upon paired intermolecular interactions and overlapping density functions (30). An accurate superposition is a prerequisite for subsequent exploitation of ligand-based computer virtual screening using either three-dimensional QSAR analyses or pharmacophore analyses. In our case, androstenedione was selected as the reference ligand. Three-dimensional conformations of both reference molecule and test compounds (5 coumarins) were generated with the CONCORD program within the Sybyl package (32), and partial atomic charges were calculated within FlexS using the Gasteiger-Hückel algorithm (33). In addition, prior to the superpositioning, all structures were minimized using the Tripos force field with all its parameter settings at their default values. The FlexS alignment for each compound was visually inspected.
Matrigel Thread Three-dimensional Cell CultureThe procedures for the preparation of the matrigel thread were similar to those reported by Daly et al. (34). 1.0 x 106 MCF-7aro cells were prepared by a brief trypsinization of cells (at To quantify the effects of hormones, aromatase inhibitors, and/or anti-estrogens on the proliferation of MCF-7aro cells in the three-dimensional matrigel model, the matrigel threads were incubated in the presence of 5 µCi of [methyl-3H]thymidine for 12 or 30 days at 37 °C in a 5% CO2 environment. Each thread was washed twice with phosphate-buffered saline to reduce the background tritium count caused by nonspecific tritium-labeled thymidine absorption by the matrigel. Each matrigel thread was then placed on a quadruply Kimwipe and allowed to completely dry under the hood. The matrigel threads together with Kimwipes were placed in scintillation vials and presoaked in 5 ml of scintillation fluid for 10 min to make sure that they were completely soaked, followed by a [methyl-3H]thymidine incorporation count. Each treatment was performed in triplicate.
Inhibition of Human Aromatase by CoumarinsResearch from this and other laboratories have identified a number of phytochemicals that can act as inhibitors of aromatase. The anti-aromatase chemicals identified so far are mainly flavones and isoflavones. In search of novel phytochemicals or their derivatives that could selectively inhibit aromatase, we examined 21 coumarins for their anti-aromatase effects. As indicated in Table I, only six compounds were found to be capable of inhibiting aromatase. Their structures are shown in Fig. 1. Three coumarins inhibited aromatase with IC50 values at 1 µM or lower and are structurally related (Table I). The three most potent compounds were found to be competitive inhibitors with respect to the androgen substrate. The Ki values of these compounds were 0.084, 0.23, and 1.1 µM, respectively (Fig. 2). Using the same assay method, these three coumarins were found to be significantly more potent than other reported anti-aromatase chemicals including aminoglutethimide (Table II). Aminoglutethimide was the first aromatase inhibitor approved for use by the Food and Drug Administration for breast cancer treatment. Letrozole, anastrozole, and 4-hydroxyandrostenedione, the new aromatase inhibitors that are approved for breast cancer treatment, are more potent inhibitors than the coumarins. The new aromatase inhibitor development has been based primarily on inhibitor structure-activity relationship studies. Therefore, 4-benzyl-3-(4'-chlorophenyl)-7-methoxycoumarin could be a lead compound to develop more potent aromatase inhibitors.
The specific interaction of these three compounds with aromatase was further demonstrated by the reduction of their binding by several mutations at the active site region of aromatase. The effects of aromatase inhibition by these compounds were tested with four critical mutants, E302D, T310S, S478T, and H480Q, which decrease the aromatase activity significantly, most likely because these point-mutations are located in the active site and involved in the process of aromatization. The activities of these mutants are 4050% that of the wild-type aromatase. Our analysis revealed that the aromatase inhibitory profiles of T310S, S478T, and H480Q by 4-benzyl-3-(4'-chlorophenyl)-7-methoxycoumarin were significantly reduced in comparison to that of the wild-type aromatase activity, demonstrating that the mutated amino acid residues are important for the binding of this coumarin (Fig. 3). Glu-302 and Thr-310 of the human aromatase have been suggested to participate in the hydroxylation reactions at the C-19 methyl group of the androgen steroid. Ser-478 and His-480 have been predicted to interact with C-4 and C-7 of the steroid (22). Our results from the aromatase mutant studies support that these coumarin inhibitors are active-site-directed.
Structure-Activity Studies and Computer Modeling Analy sesTo provide some structural explanation of our experimental results, we assessed the shape similarity of the coumarins compared with each other and to androstenedione and associated that with the activity data. The IC50 value of 4-benzyl-3-(4'-chlorophenyl)-7-methoxycoumarin (see Fig. 1 for structure) was estimated to be 80 nM. The potency was reduced when either the 7-methoxyl group was replaced by a hydroxyl group (i.e. 4-benzyl-3-(4'-chlorophenyl)-7-hydroxycoumarin) or the 4'-chloro group was eliminated from the 3-phenyl group (i.e. 4-benzyl-7-methoxy-3-phenylcoumarin) (see Table I). These results indicated that both the 7-methoxyl and 3-(4'-chlorophenyl) groups are important for the anti-aromatase activity of these coumarin derivatives. To support our conclusion, 4-benzyl-7-hydroxy-3-phenylcoumarin was found to be a very poor inhibitor of aromatase (IC50 value > 50 µM). In addition, we found that a compound with a 4-(4'-chlorobenzyl) group instead of a 4-benzyl group (i.e. 4-(4'-chlorobenzyl)-7-methoxy-3-phenylcoumarin) was not able to suppress aromatase (Table I). Furthermore, 3-(4'-chlorophenyl)-7-methoxy-4-phenylcoumarin, a compound in which the 4-benzyl group is replaced by a 4-phenyl group, was not able to suppress aromatase. Our results provided strong evidence that these three functional groups (4-benzyl, 3-(4'-chlorophenyl), and 7-methoxyl) are critical for the inhibition of aromatase by coumarin derivatives. We compared the structures of our experimental hits to that of androstenedione using the FlexS program. Fig. 4A shows the alignment of 4-benzyl-3-(4'-chlorophenyl)-7-methoxycoumarin (the most potent inhibitor of the compounds we tested) with androstenedione. It is predicted that the coumarin rings mimic the A and B rings, and the 3-(4'-chlorophenyl) group mimics the D ring of the androgen (Fig. 4B). Based on our test set, the substituent groups that appear to be important based on our structure-activity analysis, also align closely with important, known functional groups on the substrate. First, the spatial orientation of the 4-benzyl aligns very closely to the C-19 methyl group of the substrate. The top three inhibitors all have a benzyl group at this position. The importance of this benzyl group became apparent when we found that 3-(4'-chlorophenyl)-7-methoxy-4-phenylcoumarin was not able to suppress aromatase activity at all. It is known that the C-19 methyl group of the androgen substrate is pointed toward the heme group of aromatase, and the first and second hydroxylation reactions take place on C-19 (22). It is thought that the space between C-19 and the heme group is not big enough to accommodate a phenyl group. On the other hand, a benzyl group could bend (through the methylene group), and the ring could overlay on top of the 3-(4'-chlorophenyl) group. Because a compound with a 4-(4'-chlorobenzyl) group instead of a 4-benzyl group (i.e. 4-(4'-chlorobenzyl)-7-methoxy-3-phenylcoumarin) was found not to suppress aromatase, the C-4' of the benzyl group is predicted to situate in a restricted area that prevents the placement of a 4'-chlorobenzyl group. The 7-methoxyl group of the coumarin aligns very closely with the C-3 keto oxygen of the substrate. These groups share the same physiochemical feature of being hydrogen bond donor groups and are superimposed in a similar space. However, it is interesting to find that a 7-hydroxyl group instead of 7-methoxyl group on the coumarin significantly reduces the inhibitory activity against aromatase. We cannot yet adequately explain these results. On the opposite end of the molecule, the 3-(4'-chlorophenyl) group aligns near the C-17 keto oxygen. Both of these groups are electron-withdrawing groups, suggesting that a compound with an electron-pulling group in this vicinity will be favored. This may explain why 4-benzyl-7-methoxy-3-phenylcoumarin (which is missing an electron-withdrawing group at this position) shows weaker activity. These FlexS alignment results, together with our structure-activity results, strongly suggest that these three functional groups are crucial for the inhibition of aromatase by coumarin derivatives.
Interaction of Coumarins with Other Enzymes and Nuclear ReceptorsTo assess the potential usage of 4-benzyl-3-(4'-chlorophenyl)-7-methoxycoumarin (the most potent coumarin identified in this study) as an aromatase inhibitor, we need to rule out that this compound is cytotoxic. MCF-7aro cells were cultured for 3 days in the presence of up to 40 µM 4-benzyl-3-(4'-chlorophenyl)-7-methoxycoumarin, letrozole, or anastrozole but in the absence of the androgen substrate. The coumarin did not produce any noticeable cytotoxicity (i.e. suppression of cell proliferation), and this observation was consistent with letrozole and anastrozole, which have been Food and Drug Administration-approved and are currently in use for the treatment of advanced breast cancer. As expected, aromatase inhibitors suppressed breast tumor growth by inhibiting estrogen biosynthesis and should not act as cytotoxic agents that kill cells in a non-selective manner.
Furthermore, the selectivity of this coumarin inhibitor was investigated. We checked the ability of this compound to inhibit other enzymes and hormone receptors, including steroid 5
Evaluation of the Anti-aromatase Effects of Coumarins Using Matrigel Thread Cell Proliferation StudiesCell culture experiments are important for drug evaluation. These experiments allow one to determine whether cells can effectively take up the drugs by measuring the target activity in cultured cells. Of the two types of cell culture, three-dimensional cultures are thought to approximate many conditions of in vivo tumors that are not usually present in monolayer systems in vitro, including three-dimensional intercellular contact, range in pH, oxygen tension, nutrient levels, drug sensitivity, and the ability to be grown in culture for several weeks without trypsinization (35). Matrigel basement membrane matrix is derived from the Englebreth-Holm Swarm tumor that is rich in laminin, collagen IV, heparin sulfate proteoglycans, entactin, nidogen, and growth factors (36, 37). Matrigel has been used as a supporting material for a number of cell culture experiments, such as experiments for studying the effectiveness of the attachment and differentiation of both normal and transformed anchorage tumor cells (38), process of colonic tumorigenesis (39), characterization of metastatic physical properties of cancer cells (40, 41), proliferation of human cancer cells by 31P NMR spectroscopy (34), and the effects of radiation on cancer cells in the matrigel thread in vitro tumor model (42).
To demonstrate further that these anti-aromatase coumarins can suppress the proliferation of aromatase-positive and ER-positive breast cancer cells through the inhibition of estrogen formation, the effects of these compounds were evaluated using a three-dimensional matrigel thread cell culture model. The individually scattered MCF-7aro cells in the matrigel thread were induced to form large, spherical colonies by either 10 nM estradiol or testosterone (Fig. 6), whereas 100 nM ER-
For the first time, a coumarin derivative, i.e. 4-benzyl-3-(4'-chlorophenyl)-7-methoxycoumarin, has been shown to be a potent aromatase inhibitor. Biochemical and biological properties of this coumarin have been evaluated, and it was shown to be a competitive inhibitor with respect to the androgen substrate. The specific interaction with the enzyme was further evaluated through its inability to inhibit aromatase mutants with changes in the active site region. From our structure-activity studies, three functional groups of the coumarin (specifically the 3-(4'-chlorophenyl), 4-benzyl, and 7-methoxyl groups) were shown to be important for its ability to inhibit aromatase. Our computer modeling has revealed that this coumarin aligns well with the androgen substrate, providing evidence for why it is a good inhibitor of aromatase. These computer modeling results serve as a starting point in the process of understanding why these coumarins demonstrate anti-aromatase activity and in general what makes a good aromatase inhibitor. We hope to take what we have learned here, with respect to the structure-activity results, and use this knowledge to predict additional compounds with potential anti-aromatase activity. The FlexS alignment presented here can be used to develop additional ligand-based computer virtual screening strategies, including three-dimensional QSAR analyses and pharmacophore analyses.
In contrast to a strong interaction with aromatase, this coumarin does not have any effect on steroid 5 Finally, using a three-dimensional matrigel thread cell culture model, we have shown that 4-benzyl-3-(4'-chlorophenyl)-7-methoxycoumarin can suppress aromatase-mediated breast cancer cell proliferation. Our results indicate that this coumarin derivative can be a useful aromatase inhibitor or a lead compound to develop more potent aromatase inhibitors. In addition, our findings indicate that coumarins can be potent inhibitors of aromatase. Because coumarins are a major class of phytochemicals, it is reasonable to predict that some fruits and vegetables may contain potent anti-aromatase coumarins, and consumption of these fruits and vegetables could suppress aromatase in vivo.
* This research was supported by National Institutes of Health Grants ES08258 and CA44735. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
1 The abbreviations used are: ER, estrogen receptor; ERR, estrogen-related receptor; AR, androgen receptor.
2 J. Ye and S. Chen, unpublished results.
We thank Sum Ling (Sharon) Kwok for the examination of the inhibitory effect of 4-benzyl-7-hydroxy-3-phenylcoumarin on aromatase. In addition, we thank Drs. Yoshiyuki Kinoshita and Masatomo Suetsugi for the initial evaluation of the effects of coumarins on ER and ERRs, respectively.
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