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J. Biol. Chem., Vol. 279, Issue 53, 55609-55617, December 31, 2004
Synergistic Activation of Interleukin-12 p35 Gene Transcription by Interferon Regulatory Factor-1 and Interferon Consensus Sequence-binding Protein*![]() ![]() ![]() ![]() ¶
From the
Received for publication, June 11, 2004 , and in revised form, October 12, 2004.
Interferon regulatory factor-1 (IRF-1) and interferon consensus sequence-binding protein (ICSBP or IRF-8) are two members of the IRF family of transcription factors that play critical roles in interferon signaling in a wide range of host responses to infection and malignancy. Interleukin-12 (IL-12) is a key factor in the induction of innate resistance and generation of T helper type 1 cells and cytotoxic T lymphocytes. In this work, we find that ICSBP-deficient macrophages are highly defective in the production of IL-12. The defect is also observed at the level of IL-12 p40 and p35 mRNA expression. Transcriptional analyses revealed that ICSBP is a potent activator of the IL-12 p35 gene. It acts through a site localized to 226 to 219, named ICSBP-response element (ICSBP-RE), in the human IL-12 p35 promoter through physical association with IRF-1 both in vitro and in vivo. Co-expression of ICSBP and IRF-1 synergistically stimulates the IL-12 p35 promoter activity. Mutations at the ICSBP-RE results in the loss of protein binding as well as transcriptional activation by ICSBP alone or together with IRF-1. This study provides novel mechanistic information on how signals initiated during innate and adaptive immune responses synergize to yield greater IL-12 production and sustained cellular immunity.
Interferon regulatory factors (IRFs)1 constitute a family of nine mammalian transcription factors (IRF-19) that commonly possess a novel helix-turn-helix DNA binding motif. Members of IRF family are typically induced following microbial infections. The first discovered member of this family, IRF-1, has a remarkable functional diversity in the regulation of cellular response in host defense. IRF-1 selectively targets different sets of genes in various cell types in response to diverse cellular stimuli and evokes appropriate innate and adaptive immune responses (1). It has been firmly established as a critical effector molecule in IFN- -mediated signaling and in the development and function of NK, NK T cells, and cytotoxic T lymphocytes (27). IRF-1 also has direct anti-proliferative effects, thus acting as a tumor suppressor and tumor susceptibility gene. Interferon consensus sequence-binding protein (ICSBP)/IRF-8 is restricted in its expression to myeloid and lymphoid cell lineages. It can function both as a transcriptional repressor and an activator depending on the partners with which it interacts, and it plays crucial roles in myeloid differentiation, generation of plasmacytoid dendritic cells (8), macrophage activation, and tumor suppression (1, 9).
IL-12 is a heterodimeric cytokine produced primarily by macrophages and dendritic cells in both innate and adaptive immune responses. It is a key factor in the induction of T cell-dependent and independent activation of macrophages, NK cells, generation of T helper type 1 cells and CTL, induction of opsonic complement-fixing antibodies, and resistance to intracellular infections (10). The genes encoding the two heterologous chains of IL-12, p40 and p35, are located on different human and mouse chromosomes. Together, p40 and p35 form the biologically active IL-12 (also called p70). The highly coordinated expression of p40 and p35 genes to form IL-12 p70 in the same cell type at the same time is essential for the initiation of an effective immune response. The production of IL-12 p40 in activated professional antigen-presenting cells is generally in great excess over that of the p35 chain, making the latter molecule a limiting step in the formation of bioactive IL-12 (11).
Previous studies by us and others have revealed an intimate relationship between IRF-1, ICSBP, and IL-12 in that IRF-1 acts as a critical component of IFN-
MiceICSBP/ mice breeding pair were originally obtained from Dr. Keiko Ozato (National Institutes of Health). All of the mice used in the experiment were female and 68 weeks old. Mice were housed in cages with filter tops in a laminar flow hood and fed food and acid water ad libitum.
CellsThe murine macrophage cell line RAW 264.7 (RAW cells hereafter) was obtained from American Type Culture Collection and maintained in RPMI 1640 medium supplemented with 2 mM glutamine, 100 units/ml penicillin and streptomycin, and 10% FBS (endotoxin <1 ng/ml; Hyclone). Mouse inflammatory peritoneal exudate macrophages were obtained by lavage 4 days after injection of sterile 3% thioglycolate broth (1 ml of intraperitoneal). Cells were washed and resuspended in RPMI 1640 medium containing 10% fetal calf serum and standard supplements. Macrophages were plated in 24-well tissue culture dishes (0.5 x 106 cells/well). After 2 h of incubation to allow for adherence of macrophages, monolayers were washed three times to remove nonadherent cells and incubated with RPMI 1640 medium containing 10% fetal calf serum and standard supplements. The next day, some of the wells were treated with 1 µg/ml LPS and 10 ng/ml IFN- Human blood derived-monocytes were isolated from fresh blood by Ficoll/Hypaque gradient centrifugation. Mononuclear cells were incubated for 1 h in polystyrene tissue culture flasks (Falcon, BD Biosciences). After 1 h of incubation to allow for adherence of monocytes, monolayers were washed three times to remove nonadherent cells and incubated with RPMI 1640 medium containing 10% fetal calf serum and standard supplements. The treatment of human monocytes is the same as above unless otherwise stated.
ReagentsAll of the antibodies used in this study were purchased from Santa Cruz Biotechnology, Inc. Expression vector ICSBP and control LK440 were provided by Keiko Ozato. All of the plasmid DNA were prepared with Qiagen Endo-free Maxi-Prep kits. Recombinant human and murine IFN- ELISASupernatants from macrophage cultures were harvested at 6, 12, and 24 h after LPS stimulation and stored at 70 °C. Mouse IL-12 p40 and p70 were detected by using the OPT-EIA ELISA kit (BD Biosciences) according to the manufacturer's instructions. Concentrations were calculated by regression analysis of a standard curve.
RNase Protection Assay (RPA)Mouse peritoneal macrophages were pretreated with IFN- Quantitative real-time PCR (qRT-PCR)To determine the level of IL-12 p35 mRNA by quantitative real time PCR, we used a modified protocol from Rajeevan et al. (17). cDNA converted from 1 µg of total RNA was diluted in a several concentrations. Diluted cDNA was mixed with a pair of primers (10 µM) derived from mouse IL-12 p35 or glyceraldehyde-3-phosphate dehydrogenase cDNA sequences and SYBR green PCR master mixture (Applied Biosystem) in a 15-µl volume. PCR cycling was performed as follows: 2 min at 50 °C; 10 min at 95 °C for 1 cycle followed by 40 cycles at 15 s at 95 °C; and 1 min at 60 °C. The PCR primers used were: forward primer, 5'-AAATGAAGCTCTGCATCCTGC-3', and reverse primer, 5'-TCACCCTGTTGATGGTCACG-3', for mouse IL-12 p35; forward primer, 5'-AACT TTGGCATTGTGGAAGG-3', and reverse primer, 5'-ACACATTGGGGGTAGGAACA-3', for mouse glyceraldehyde-3-phosphate dehydrogenase. Nuclear Extract PreparationNuclear extracts for Western blot and DNA affinity binding assay were prepared according to the methods of Schreiber et al. (18). Western BlottingSDS-PAGE was performed according to Laemmli (19). Gels were electroblotted to polyvinylidene difluoride membranes and blocked in 5% milk in Tris buffer, pH 8.0. Primary antibody was added at the concentration of 1 µg/ml in Tris buffer containing 1% milk powder and left overnight at 4 °C. After extensive washing, secondary antibody conjugated to horseradish peroxidase was added at a 1:5000 dilution in 5% milk. After extensive washing, blots were subjected to enhanced chemiluminescence detection (PerkinElmer Life Sciences). Transfection AssayTransient transfections were performed by electroporation as described previously (20).
DNA Affinity Binding AssayComplementary biotinylated oligonucleotides encompassing the human IL-12 p35 promoter ICSBP-RE (235/208) or the mutant ICSBP-RE were synthesized and annealed. 4 µg of biotinylated double-stranded DNA were conjugated to 200 µl of streptavidin-bound magnetic beads (Dynabeads, M280; Dynal) in binding/washing buffer (10 mM Tris-HCl, pH 8.0, 1 mM EDTA, 0.1 M NaCl) for 30 min at room temperature. Unconjugated DNA was collected with a magnetic particle concentrator. DNA-conjugated beads were then blocked by 0.5% bovine serum albumin in TGEDN buffer (120 mM Tris-HCl, pH 8.0, 1 mM EDTA, 0.1 M NaCl, 1 mM dithiothreitol, 0.1% Triton X-100, 10% glycerol) at room temperature for 1 h. Beads were washed once in TGEDN buffer and resuspended in 100 µl of TGEDN. 20-µl beads conjugated to 4 µg of DNA were equilibrated with TGEDN buffer and incubated with 1000 µg of RAW cell nuclear extracts and 20 µg of herring sperm DNA (Sigma) at 4 °C for 2 h. Beads were washed in TGEDN buffer, and bound materials were eluted in 20 µl of the same buffer supplemented with 0.5% SDS and 1 M NaCl. Eluted materials and unconjugated protein were separated by 12% SDS-PAGE and detected by immunoblot analysis using rabbit anti-IRF-1 antibody with the enhanced chemiluminescence kit. Nuclear extracts were prepared from RAW cells treated with 10 ng/ml IFN-
Co-immunoprecipitationRAW 264.7 cells were activated with 10 ng/ml IFN-
Chromatin Immunoprecipitation (ChIP) AssayThe ChIP procedure was performed using an assay kit according to the manufacturer's instructions (Upstate Biotechnology). 107 human peripheral blood monocytes were stimulated with 10 ng/ml IFN- Statistical AnalysisStudent's t test was performed wherever applicable. Mean ± S.D. is shown unless otherwise indicated.
IL-12 p40 and p70 Production Is Defective in ICSBP/ miceTo determine the role of ICSBP in the regulation of IL-12 production, we obtained inflammatory peritoneal macrophages from ICSBP/ mice (on C57BL/6 background) and control wild type animals and stimulated them in vitro with LPS or primed with IFN- followed by LPS stimulation. IL-12 p40 and p70 production at various times over a period of 24 h was measured by specific ELISA. Because of the lack of a p35-speicifc ELISA due to the fact that it is secreted only as a heterodimer, the measurement of p70 production is a generally accepted indicator of IL-12 p35 production due to the one to one ratio of the p40-p35 interaction. As shown in Fig. 1, IL-12 p40 production stimulated by LPS alone (A) or IFN- plus LPS (B) was strongly impaired in ICSBP/ macrophages compared with wild type or ICSBP+/ cells. Similarly, IL-12 p70 production induced by LPS (C) or IFN- plus LPS (D) was virtually absent in ICSBP/ cells. These results indicate that ICSBP is an essential regulator of IL-12 p40 and p70 production.
IL-12 p40 and p35 mRNA Expression Is Impaired in ICSBP/ MacrophagesTo determine the effects of ICSBP deficiency on IL-12 p40 and p35 gene expression, we examined their steady-state mRNA expression by RPA and by qRT-PCR. The RPA (Fig. 2A) shows that the level of IL-12 p40 mRNA induced by LPS alone or IFN- plus LPS was comparable between wild type and ICSBP+/ peritoneal macrophages (lane 3 versus lane 7 and lane 4 versus lane 8), whereas its level was significantly reduced in ICSBP/ cells activated by IFN- and LPS (lanes 4 and 8 versus lane 12), a result consistent with our previous finding (16). IL-12 p35 mRNA levels were reduced in ICSBP/ cells activated with LPS alone (lane 11) or IFN- plus LPS (lane 12). The qRT-PCR analysis (Fig. 2B) shows more definitively that both LPS- and IFN- /LPS-induced IL-12 p35 mRNA levels were drastically reduced in ICSBP/ macrophages. These data strongly indicate that ICSBP regulates both IL-12 p40 and p35 mRNA expression.
ICSBP Activates the IL-12 p35 Gene Transcription through a Proximal Promoter RegionWe had previously established the molecular mechanism whereby ICSBP regulates IL-12 p40 gene transcription (16). In this work, we sought to elucidate how ICSBP regulates IL-12 p35 gene transcription by first examining the response of the human IL-12 p35 promoter to the effects of ICSBP in a well established transient transfection system in RAW cells (12). Fig. 3A shows that ICSBP expression stimulated the IL-12 p35 promoter-driven luciferase activity in a dose-dependent manner in RAW cells under all conditions, but by far the greatest stimulation was seen in IFN- /LPS-activated cells (filled diamonds). Note that, although difficult to discern in this graph because of the relatively low scale, the IL-12 p35 promoter was highly inducible by IFN- and LPS (1020-fold) without exogenous ICSBP, as is the case here and as we have shown previously (12). An analysis of endogenous ICSBP protein expression revealed that ICSBP was primarily induced by IFN- in the nucleus, not in the cytoplasm, and that LPS treatment alone had little effect (Fig. 3B). These data clearly demonstrate the ability of ICSBP, primarily as an IFN- -inducible transcription factor, to activate IL-12 p35 gene transcription.
To further explore the molecular mechanism whereby IFN regulates IL-12 p35 transcription through ICSBP, we dissected the human IL-12 p35 promoter by sequentially deleting the full-length promoter, a 1143-bp genomic fragment (12), from the 5' end. The transcriptional start site of the human IL-12 p35 gene in macrophages has been mapped previously (21). Because ICSBP is primarily induced by IFN- , not LPS treatment, in macrophages (Fig. 3B), we stimulated RAW 264.7 cells with LPS in all of our transfection studies to provide the other essential set of transcription factors for maximally induced IL-12 p35 gene expression (12). As shown in Fig. 3C, the full-length IL-12 p35 promoter (1082 to +61) was highly responsive to stimulation by ICSBP in resting cells ( 8-fold compared with control vector-transfected cells) and in LPS-activated cells ( 27-fold). Sequential deletion of the full-length promoter down to 231 had no adverse impact on the inducibility of the p35 promoter by ICSBP. Note that the 231/+61 construct has lost a previously identified element, IRF-E-(245 to 236), that is critical for response to IRF-1 (12). The loss of the IRF-E apparently had no effect on the response to ICSBP. A further deletion of 17 bp (to 214) resulted in a moderate loss of the ICSBP response in resting cells and a dramatic loss of response in LPS-stimulated cells, indicating the presence of a critical cis-element(s) in this region involved in response to ICSBP. By this approach, we identified the 17-bp region between 231 and 214 as a site containing a ICSBP-RE. Within this region, the GeneToolTM program (Double Twist, now defunct) predicted an IFN- -regulated element consensus sequence ( -IRE_CS), 5'-CTGGAGGC-3', from 225 to 219. Localization of ICSBP-RETo assess whether the predicted sequence 5'-CTGGAGGC-3' located at 226 to 219 was critical for ICSBP response, we introduced 2-bp substitutions into this site in the context of the 231/+61 of the IL-12 p35 promoter and measured their response to ICSBP by transfection into RAW 264.7 cells treated with LPS. One of the substitution mutants (Fig. 4A) showed a different response from the wild type control in that the mutation reduced the ability by >70% of the 231/+61 IL-12 p35 promoter to stimulation by the co-transfected ICSBP without LPS (Fig. 4B, compare column 3 with column 1), similarly to the 5'-deletion construct of 214/+61 that has lost the entire 17-bp region including the ICSBP-RE (column 5). Secondary to that, the LPS-induced promoter activity of the mutant was also reduced proportionally (compare column 4 with column 2).
ICSBP and IRF-1 Physically Interact and Synergize to Activate IL-12 p35 TranscriptionGiven the data shown in Fig. 4, we were interested in understanding the physical aspect of the ICSBP activity, i.e. DNA-protein interactions at the ICSBP-RE. However, by conventional electrophoretic mobility shift assay, we were unable to detect significant DNA binding activity at this site. We reasoned that this may be because of the low levels or low affinity of nuclear binding proteins that could specifically recognize this DNA element. Thus, we resorted to the DNA affinity binding assay, which allows the detection of low affinity or low levels of nuclear binding activities (12, 16). By this method, we still could not detect the presence of ICSBP. Surprisingly, we saw weak IRF-1 binding to this site in response to IFN- and LPS in a sequence-specific manner since the mutant probe failed to recognize the binding (Fig. 5A). This result was corroborated by co-immunoprecipitation, which showed that an anti-IRF-1 IgG was able to pull down ICSBP in IFN- -stimulated RAW 264.7 cells (Fig. 5B, top panel) or by reciprocal co-immunoprecipitation with anti-ICSBP (Fig. 5B, bottom), demonstrating their co-presence in the same complex that interacts with the ICSBP-RE (not necessarily directly interacting), as is the case in IL-12 p40 gene transcription (16).
The above results led us to reason that IRF-1 may be involved in ICSBP-stimulated IL-12 p35 transcription. We tested this hypothesis by determining whether ICSBP and IRF-1 could stimulate IL-12 p35 transcription synergistically. Fig. 5C shows that the full-length IL-12 p35 promoter (1083/+61) was synergistically activated by exogenous ICSBP and IRF-1 but only in LPS-stimulated cells, not in resting cells. The 231/+61 construct was also synergistically activated by ICSBP and IRF-1 (Fig. 5D). Moreover, this synergy was dependent on the ICSBP-RE because the ICSBP-RE mutant lost significantly its ability to respond to ICSBP and IRF-1 synergistically (Fig. 5D).
ICSBP and IRF-1 Both Bind to the ICSBP-RE in Vivo in Activated Primary MonocytesTo determine whether ICSBP and IRF-1 could bind to the endogenous IL-12 p35 promoter at the ICSBP-RE in vivo in primary human monocytes, we performed ChIP using a pair of primers flanking the ICSBP-RE for PCR amplification (Fig. 6A). Fig. 6B shows that both IRF-1 and ICSBP binding to the ICSBP-RE were readily detectable in monocytes stimulated with IFN-
IFN -mediated enhancement of IL-12 production represents the convergence of signals derived from innate and adaptive immune responses. IFN- is produced mainly by NK cells during innate responses and by activated T lymphocytes during adaptive immunity. The exposure of professional antigen-presenting cells to IFN- activates IRFs including IRF-1 and ICSBP that are critical for maximal IL-12 synthesis when coupled with microbial stimuli such as LPS. This work builds on our previous studies and further elucidates the mechanism whereby the two signals initiated by innate and adaptive stimuli, respectively, converge to induce high levels of IL-12 production and ensure highly active and persistent NK and T helper type 1 responses.
The critical role of ICSBP in IL-12 production is illustrated in the observation that IL-12 p35 and p40 mRNA expression is impaired in ICSBP-deficient macrophages (Fig. 2) and that IL-12 p40 synthesis is severely reduced (Fig. 1, A and B), whereas IL-12 p70 production is virtually absent (Fig. 1, C and D). There is a quantitative discrepancy between reduced IL-12 p35 and p40 mRNA expression in ICSBP/ macrophages on the one hand and the total lack of IL-12 p70 synthesis by these cells on the other. This may be explained by the possibility that the reduced levels of IL-12 p40 and p35 proteins in ICSBP/ cells fall below a certain "threshold" for the formation of IL-12 heterodimers. Alternatively, although less likely, the ICSBP deficiency causes an indirect effect on the assembly or secretion of the IL-12 p70 heterodimer. Post-translational regulation of IL-12 production has been reported previously (2224). That in our transfection system, LPS coupled with forced ICSBP expression failed to induce significant activation of the IL-12 p35 promoter compared with unstimulated cells (Fig. 3A) is consistent with the fact that IL-12 p35 transcriptional activation also requires IRF-1, which is induced by IFN- We were unable to detect a direct interaction of ICSBP with the ICSBP-RE in vitro but able to do so in vivo by ChIP (Fig. 6B). This could be due to a low abundance of ICSBP in the complex or due to the shielding of ICSBP from antibody contact by IRF-1 in vitro. This "hindrance" by IRF-1 may not occur in vivo on the chromatin-wrapped IL-12 p35 promoter because, presumably, the conformation in which IRF-1 and ICSBP bind to the ICSBP-RE in the presence of the surrounding chromatin structures does not obstruct access by their respective antibodies during the ChIP procedure (Fig. 6B). Furthermore, other lines of evidence suggest that ICSBP functionally interact with IRF-1. They can synergize to stimulate IL-12 p35 transcription through the ICSBP-RE (Fig. 5C) by binding together to the ICSBP-RE in vivo (Fig. 6B). It should be pointed out that the ICSBP-RE we identified in the human IL-12 p35 promoter does not look like a conventional IRF-E (GAAA(G/C)(T/C)GAAA(G/C)(T/C)) (25) or ISRE ((A/G)NGAAANNGAAACT) (26). Thus, it is possible that ICSBP may interact with this element through an unidentified factor in addition to IRF-1. A third possibility is that ICSBP could enhance IRF-1 binding to the ICSBP-RE through an intermediary but itself does not come into direct contact with DNA.
Based on several studies by us as well as other groups, a model is emerging that schematizes the molecular events that lead to IL-12 production by antigen-presenting cells (Fig. 7 for the IL-12 p35 subunit gene). During the innate phase of an immune response, microbial antigens activate the NF
* This work was supported by National Institutes of Health Grants AI-045899 and CA-79772 (to X. M.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. ¶ To whom correspondence should be addressed: Dept. of Microbiology and Immunology, Weill Medical College of Cornell University, 1300 York Ave., New York, NY 10021. Tel.: 212-746-4404; Fax: 212-746-4427; E-mail: xim2002{at}med.cornell.edu.
1 The abbreviations used are: IRF-1, interferon regulatory factor-1; ICSBP, interferon consensus sequence-binding protein; IL-12, interleukin-12; ICSBP-RE, ICSBP-response element; IFN-
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