HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS		QUICK SEARCH:   [advanced] Author: Keyword(s): Year:  Vol:  Page:

J. Biol. Chem., Vol. 280, Issue 11, 10340-10349, March 18, 2005

This Article Abstract Full Text (PDF) All Versions of this Article: 280/11/10340    most recent M409443200v1 Submit a Letter to Editor Alert me when this article is cited Alert me when eLetters are posted Alert me if a correction is posted Citation Map Services Email this article to a friend Similar articles in this journal Similar articles in PubMed Alert me to new issues of the journal Download to citation manager Request Permissions Citing Articles Citing Articles via HighWire Citing Articles via Google Scholar Google Scholar Articles by Watanabe, S. Articles by Makino, K. Search for Related Content PubMed PubMed Citation Articles by Watanabe, S. Articles by Makino, K. Social Bookmarking                      What's this?

Complete Reversal of Coenzyme Specificity of Xylitol Dehydrogenase and Increase of Thermostability by the Introduction of Structural Zinc^*

Seiya Watanabe¶, Tsutomu Kodaki¶, and Keisuke Makino¶||

From the Institute of Advanced Energy, Kyoto University, Gokasyo, Uji, Kyoto 611-0011, International Innovation Center, Kyoto University, Yoshidahonmachi, Sakyo-ku, Kyoto 606-8501, and ^¶CREST, JST (Japan Science and Technology Agency), Gokasyo, Uji, Kyoto 611-0011, Japan

Received for publication, August 17, 2004 , and in revised form, December 27, 2004.

	ABSTRACT

TOP ABSTRACT INTRODUCTION EXPERIMENTAL PROCEDURES RESULTS DISCUSSION REFERENCES

 
Pichia stipitis NAD⁺-dependent xylitol dehydrogenase (XDH), a medium-chain dehydrogenase/reductase, is one of the key enzymes in ethanol fermentation from xylose. For the construction of an efficient biomass-ethanol conversion system, we focused on the two areas of XDH, 1) change of coenzyme specificity from NAD⁺ to NADP⁺ and 2) thermostabilization by introducing an additional zinc atom. Site-directed mutagenesis was used to examine the roles of Asp²⁰⁷, Ile²⁰⁸, Phe²⁰⁹, and Asn²¹¹ in the discrimination between NAD⁺ and NADP⁺. Single mutants (D207A, I208R, F209S, and N211R) improved 548-fold in catalytic efficiency (k_cat/K_m) with NADP⁺ compared with the wild type but retained substantial activity with NAD⁺. The double mutants (D207A/I208R and D207A/F209S) improved by 3 orders of magnitude in k_cat/K_m with NADP⁺, but they still preferred NAD⁺ to NADP⁺. The triple mutant (D207A/I208R/F209S) and quadruple mutant (D207A/I208R/F209S/N211R) showed more than 4500-fold higher values in k_cat/K_m with NADP⁺ than the wild-type enzyme, reaching values comparable with k_cat/K_m with NAD⁺ of the wild-type enzyme. Because most NADP⁺-dependent XDH mutants constructed in this study decreased the thermostability compared with the wild-type enzyme, we attempted to improve the thermostability of XDH mutants by the introduction of an additional zinc atom. The introduction of three cysteine residues in wild-type XDH gave an additional zinc-binding site and improved the thermostability. The introduction of this mutation in D207A/I208R/F209S and D207A/I208R/F209S/N211R mutants increased the thermostability and further increased the catalytic activity with NADP⁺.

	INTRODUCTION

TOP ABSTRACT INTRODUCTION EXPERIMENTAL PROCEDURES RESULTS DISCUSSION REFERENCES

 
Xylose is one of the major components of hemicellulose, the second most abundant carbohydrate polymer in nature. Efficient utilization of xylose is required to develop economically viable processes for producing biofuels such as ethanol from biomass (for recent reviews, see Refs. 1–4). Yeasts have long been used for the production of alcoholic beverages such as wine, beer, and Japanese sake. In particular, Saccharomyces cerevisiae has been used widely because of the ability to produce high concentrations of ethanol and high inherent ethanol tolerance. The native strains, however, cannot ferment xylose as a carbon source. The major strategy for the generation of xylose-fermenting S. cerevisiae is to introduce genes involved in xylose metabolism from other organisms (Scheme 1). In xylose-fermenting fungi such as Pichia stipitis, xylose is converted into xylulose by the sequential action of two oxidoreductases. First, xylose reductase (alditol:NADP⁺ 1-oxidoreductase, EC 1.1.1.21 [EC] ) catalyzes reduction of the C1 carbonyl group of xylose, yielding xylitol as the product. Xylitol is then oxidized by xylitol dehydrogenase (XDH¹; EC 1.1.1.9 [EC] ) to give xylulose. S. cerevisiae transformed with these two genes from P. stipitis could ferment xylose to ethanol. There is another problem; the excretion of xylitol occurs unless a co-metabolizable carbon source such as glucose is added. This is probably caused by several combined factors. In particular, intercellular redox imbalance due to a different coenzyme specificity of xylose reductase (with NADPH) and XDH (with NAD⁺) has been thought to be one of the main factors (2). The generation of an NADP⁺-dependent XDH by protein engineering would avoid this problem.

View larger version (18K): [in this window] [in a new window]   SCHEME 1. XR, xylose reductase; XI, xylose isomerase; XK, xylulokinase.

XDH is a medium-chain dehydrogenase/reductase (MDR), which constitutes a large enzyme superfamily consisting of about 1000 members (for reviews, see Refs. 5 and 6). The superfamily is classified into eight subfamilies based on amino acid sequence alignment and the structural similarity of substrates. XDH belongs to the polyol dehydrogenase (PDH) subfamily that contains sorbitol dehydrogenase (SDH; EC 1.1.1.14 [EC] ) and L-arabinitol 4-dehydrogenase from several organisms. Most PDHs catalyze strict NAD⁺(H)-dependent interconversion between alcohols and their corresponding ketones or aldehydes. The alcohol dehydrogenase (ADH; EC 1.1.1.1 [EC] ) subfamily, whose enzymes have been studied most extensively, are either NAD⁺(H)- or NADP⁺(H)-dependent enzymes. A number of crystallographic analyses of MDRs, such as ADHs (7–13) and SDHs (14, 15), have revealed that their protein folds are very similar, and their coenzyme binding mode is followed a classical "Rossmann fold." Many MDRs have one zinc atom at the catalytic site, which is necessary for enzyme activity. Some possess an additional second zinc atom, which is known as a structural zinc atom (see Fig. 1). Although the role of the structural zinc atom has been proposed to maintain the quaternary structure of the protein, its role has not yet been clarified (16).

View larger version (27K): [in this window] [in a new window]   FIG. 1. Schematic diagram showing the interactions of the coenzyme, zinc atoms, and nearby residues. Left panel, NAD+-dependent XDH from P. stipitis. Right panel, NADP+(H)-dependent SDH from B. argentifolii. Colors of red and blue indicate positive and negative charge, respectively. Dark and light green zinc atoms correspond to catalytic and structural zinc, respectively. The gray-colored ligands are conserved between the two enzymes.

	EXPERIMENTAL PROCEDURES

TOP ABSTRACT INTRODUCTION EXPERIMENTAL PROCEDURES RESULTS DISCUSSION REFERENCES

 
Cloning of the PsXDH Gene—P. stipitis (Yamadazyma stipitis NBRC 1687) was purchased from the National Institute of Technology and Evaluation (Chiba, Japan) and cultured at 25 °C in YM medium (10 g of glucose, 5 g of peptone, 3 g of yeast extract, and 3 g of malt extract per liter (pH 5.6)). The isolation of P. stipitis genomic DNA was carried out according to the methods of Kotter et al. (42). Based on the published sequence of the P. stipitis Xyl2 gene (GenBank^TM accession number X55392 [GenBank] ), the following two primers were designed: Xyl2^UP, 5'-ATGACTGCTAACCCTTCCTTGGTGTTG-3' (27-mer) and Xyl2^DOWN, 5'-TTACTCAGGGCCGTCAATGAGACACTTG-3' (28-mer). PCR was carried out using PCR Thermal Cycler PERSONAL (TaKaRa) in a 50-µl reaction mixture containing 10 pmol of primers, 1 unit of KOD-plus DNA polymerase (Toyobo), and 100 ng of P. stipitis genomic DNA under conditions of denaturation at 94 °C for 15 s, annealing at 50 °C for 30 s, and extension at 68 °C for 1.5 min. A single PCR product was introduced into the SmaI site in the plasmid pBluescript SK(–) (Stratagene) to yield pBS^Xyl2.

To introduce the restriction site for BamHI and PstI at 5' and 3' termini of the Xyl2, respectively, PCR was carried out using pBS^Xyl2 as a template DNA and the following two primers: XDH^BamHI, 5'-catacggatccgACTGCTAACCCTTCCTTGG-3' (32-mer), and XDH^PstI, 5'-cttggctgcagTTACTCAGGGCCGTCAATGAGACAC-3' (36-mer) (lowercase letters indicate additional bases for introducing digestion sites of BamHI and PstI (underlined letters)). The amplified DNA fragment was introduced into BamHI-PstI sites in pQE-81L (Qiagen), a plasmid vector for conferring N-terminal His₆ tag on the expressed proteins, to obtain pHis^WT.

Amino Acid Sequence Alignment of PsXDH—The protein sequence of PsXDH was analyzed using the Protein BLAST program of the National Center for Biotechnology Information (www.ncbi.nlm.nih.gov), and only proteins that possessed highly significant similarity and had already been characterized were used for multiple-sequence alignment using the ClustalW program distributed by the Bioinformatics Center of Kyoto University (www.genome.jp).

Site-directed Mutagenesis—The mutations were introduced by sequential steps of PCR (43) with a small modification. The synthetic oligonucleotide primer sequences involving the mutations are shown in Table II. In the first round, two reactions, I and II, were performed with the following primers, XDH^BamHI and one of the antisense primers containing the mutations (reaction I) and one of the sense primers containing the mutations and XDH^PstI (reaction II). In the final amplification step purified overlapping PCR products were used as templates, and XDH^BamHI and XDH^PstI were used as primers. D207A, I208R, F209S, N211R, and C4 (S96C/S99C/Y102C) mutants were obtained using pHis^WT as a template. All the final PCR products were cloned into pQE-81L to obtain plasmids pHis^D207A, pHis^I208R, pHis^F209S, pHis^N211R, and pHis^C4, respectively.

Expression and Purification of His-tagged PsXDHs—Escherichia coli DH5 harboring the expression plasmid for the His-tagged wild-type enzyme (WT) and mutated PsXDHs was grown at 37 °C to a turbidity of 0.6 at 600 nm in Super broth medium (12 g of Tryptone, 24 g of yeast extract, 5 ml of glycerol, 3.81 g of KH₂PO₄, and 12.5 g of K₂HPO₄ per liter (pH 7.0)) containing 50 mg/liter ampicillin. After the addition of 1 mM isopropyl--D-thiogalactopyranoside, the culture was further grown for 6 h to induce the expression of PsXDH protein. Cells were harvested and resuspended in 20 ml of Buffer A (pH 8.0, 50 mM sodium phosphate containing 2 mM MgCl₂, 0.3 M NaCl, 10 mM xylitol, 10 mM 2-mercaptoethanol and 10 mM imidazole) per liter of the culture. Hen-egg lysozyme was added to the cell suspension at concentrations of 2 mg/ml, and the mixture was gently shaken for 2 h at 4 °C. The cells were then disrupted by sonication for 45 min with approximate intervals on ice using ASTRASON® Ultrasonic Liquid Processor XL2020 (Misonix Inc.). After centrifugation of the cell lysate at 24,000 rpm for 30 min at 4 °C to remove cell debris, the supernatant was further centrifuged at 24,000 rpm for 6 h at 4 °C. All chromatography was carried out using an ÄKTA purifier system (Amersham Biosciences) at 4 °C. The resultant supernatant was loaded onto a nickel nitrilotriacetic acid Superflow column (Qiagen) equilibrated with Buffer A. After washing with the same buffer, the column was further washed with Buffer B (pH 8.0, Buffer A containing 10% (v/v) glycerol and 50 mM imidazole instead of 10 mM imidazole). The enzymes were then eluted with Buffer C (pH 8.0, Buffer B containing 250 mM imidazole instead of 50 mM imidazole). The eluant was treated by ultrafiltration with Centriplus YM-30 (Millipore) at 4000 rpm for 2 h and dialyzed against Buffer D (pH 8.0, 50 mM sodium phosphate containing 2 mM MgCl₂, 10 mM xylitol, 1 mM dithiothreitol, and 50% (w/v) glycerol). All His-tagged recombinant PsXDHs were stored at–35 °C until use.

The native molecular mass of PsXDH was estimated by gel filtration, which was carried out using an ÄKTA purifier system at a flow rate of 1 ml/min. The purified enzyme was loaded onto an HiLoad 16/60 Superdex 200 pg column (Amersham Biosciences) equilibrated with Buffer E (pH 8.0, 50 mM sodium phosphate containing 2 mM MgCl₂ and 1 mM dithiothreitol) or water. Aldolase (158 kDa), albumin (67 kDa), ovalbumin (43 kDa), and chymotrypsinogen A (25 kDa) in gel filtration calibration kits (Amersham Biosciences) were used as molecular markers.

Enzyme Assay—PsXDH activity was assayed routinely in the direction of polyol oxidation by measuring the reduction of NAD(P)⁺ at 340 nm at 35 °C (41). The standard assay mixture contained 50 mM MgCl₂ and 300 mM xylitol in 50 mM Tris-HCl (pH 9.0) buffer. All reactions were started by the addition of 0.10 ml of a 20 mM NAD(P)⁺ solution to a final volume of 1.0 ml (standard assay condition). One unit of enzyme activity refers to 1 µmol of NAD(P)⁺H produced/min. The kinetic parameters, K_m and k_cat values, were calculated by Lineweaver-Burk plot. Protein concentrations were determined by the method of Lowry et al. (44) with bovine serum albumin as a standard.

SDS-PAGE and Western Blot Analysis—SDS-PAGE was carried out by the method of Laemmli (45) with 12% at 25 mA. For Western blot analysis the cell-free extracts of E. coli and/or purified PsXDHs were separated by SDS-PAGE, and the proteins on the gels were transferred onto a nitrocellulose membrane (Hybond-ECL; Amersham Biosciences). Western blot analysis was carried out with the ECL Western blotting detection system (Amersham Biosciences) and RGS·His HRP antibody, a horseradish peroxidase-fused mouse monoclonal antibody against Arg-Gly-Ser-His₆ in the N-terminal additive peptide of the expressed recombinant proteins (Qiagen).

Metal Analysis—The zinc content of PsXDH was determined using an inductively coupled argon plasma emission spectrophotometer (ICAP-500, Nippon Jarrell-ASH Co., LTD, Kyoto, Japan). The protein sample was gel-filtered on a HiLoad 16/60 Superdex 200 pg column with 50 mM sodium phosphate (pH 8.0) and adjusted at concentrations of 0.5 mg/ml with the same buffer. A standard solution of Zn(NO₃)₂ in 0.1 M HNO₃ was used for the calibration curve.

Circular Dichroism (CD) Measurements—For comparisons with the thermostability of the PsXDH, CD measurements at 220 nm were carried out between 10 and 70 °C with a Jasco spectropolarimeter model J-720 (Japan Spectroscopic Co., Ltd., Tokyo, Japan) using a quartz cuvette with a path length of 2 mm under constant N₂ flush. The temperature was increased at a rate of 1 °C/min. Enzyme samples dialyzed overnight against Buffer E were diluted at concentrations of 1 mg/ml with the same buffer.

	RESULTS

TOP ABSTRACT INTRODUCTION EXPERIMENTAL PROCEDURES RESULTS DISCUSSION REFERENCES

 
Mutations for Reversal of Coenzyme Specificity—A search of protein databases revealed that PsXDH showed higher homology with XDHs and/or SDHs from several organisms than other MDRs and that most of these proteins have been reported as strict NAD⁺(H)-dependent enzymes (Table I). B. argentifolii SDH is the only NADP⁺(H)-dependent enzyme among the characterized PDHs (40). Although the crystal structure of B. argentifolii SDH resolved recently is an apo form (14), a phosphate ion from the crystallization buffer is found adjacent to Ala¹⁹⁹, Arg²⁰⁰, and Arg²⁰⁴ (Fig. 1). There is a sequence gap around the putative coenzyme binding region (Table I), but Ala¹⁹⁹–Arg²⁰⁰ is obviously homologous to Asp²⁰⁷–Ile²⁰⁸ in PsXDH (positions 8 and 9) as described in the Introduction. These aspartate and hydrophobic residues were conserved completely among other NAD⁺(H)-dependent PDHs. Furthermore, B. argentifolii SDH possesses Arg²⁰³, whereas the basic residue is only rarely seen among NAD⁺(H)-PDHs involving PsXDH (position 11). On the other hand, the adjacent basic residue (Lys²¹² in PsXDH) is highly conserved regardless of the coenzyme specificity of PDHs (position 12). It is difficult to judge whether the position of 209 should be involved in the mutation sites because there is a homologous Ser residue regardless of NAD⁺(H)- and NADP⁺(H)-dependent enzyme(s) (position 9). We decided to choose this position as an additional mutation site, and Asp²⁰⁷, Ile²⁰⁸, Phe²⁰⁹, and Asn²¹¹ were chosen as amino acid residues to attempt the switch of coenzyme specificity of PsXDH. Four single mutants, D207A, I208R, F209S, and N211R, three double mutants, AR (D207A/I208R), RS (I208R/F209S), and AiS (D207A/F209S), a triple mutant, ARS (D207A/I208R/F209S), and a quadruple mutant, ARSdR (D207A/I208R/F209S/N211R), were generated by site-directed mutagenesis (Table II).

Purification of Recombinant PsXDHs—All recombinant PsX-DHs-attached His₆ tags at their N termini were expressed in E. coli (Fig. 2A) and purified with a Ni²⁺-chelating affinity column. SDS-PAGE analysis (Fig. 2B) revealed that the purities of recombinant enzymes were at least 9095%, and each apparent molecular mass of PsXDHs was 39,000 Da, in good agreement with the calculated molecular mass of the enzyme with His₆ tag (39,956.79 Da for the WT). To estimate the native molecular mass, the purified WT enzyme was loaded on HiLoad 16/60 Superdex 200 pg column (Fig. 2C). When sodium phosphate was used as a buffer, the estimated molecular mass was 82,000 ± 1,000 Da, indicating that the enzyme existed as a dimer of the native enzyme (41). On the other hand, the value was 188,900 ± 10,000 Da in deionized water, indicating that the enzyme existed as a tetrameric form. Other recombinant PsXDH mutants also showed a similar tendency (data not shown). Furthermore, the WT in water maintained similar specific activity compared with that in sodium phosphate buffer (see Fig. 5B). This analysis indicated that recombinant PsXDH can form either a dimer or tetramer without loss of activity, in contrast with Galactocandida mastotermitis XDH; this enzyme is natively a tetramer and lost half its activity under deionized conditions caused by loss of the catalytic zinc atom (46). Generally, all MDRs are a dimer or tetramer consisting of identical subunits (5, 6).

View larger version (26K): [in this window] [in a new window]   FIG. 2. A, immunoblot analysis of recombinant PsXDHs expressed in E. coli cells. The control was 0.1 µg of purified WT. Ten µg each of sonic extracts of transformed E. coli cells was applied. A Western blot analysis was carried out using an ECL Western blotting system and anti-His antibody (Amersham Biosciences) according to the manufacturer's instructions. B, SDS-PAGE analysis of purified recombinant PsXDHs. Ten µg each of purified protein was applied. Because the figure shows a superposition of results of several gels, relative intensities vary from different sets of experiments. C, elution profile of purified PsXDH during gel filtration. Buffer E (black) or water (gray) was used as a loading solvent. WT (2 mg) was applied onto a HiLoad 16/60 Superdex 200 pg column. The inset shows the molecular mass determination for PsXDH (closed symbol) using calibration obtained with a molecular mass standard (open symbol). Black- and gray-colored symbols indicate the molecular mass of PsXDH under Buffer E and water, respectively.

View larger version (14K): [in this window] [in a new window]   FIG. 5. A, stoichiometric analysis of the zinc atom of WT and mutant PsXDH. The zinc content was determined by using an inductively coupled argon plasma-emission spectrophotometer. The zinc content was shown as the molar ratio of the zinc atom to the subunit. Values are the means ± S.D., n = 3. B, sensitivity against the chelating reagent. Purified enzyme was dialyzed against water (gray bar) or 1 mM EDTA (pH 7.5) (black bar), and then the remaining activity was measured under optimal conditions. The open bar indicates the sample in Buffer E (control). Values are the means ± S.D., n = 3.

View larger version (13K): [in this window] [in a new window]   FIG. 3. Catalytic efficiency (kcatKm with NAD(P)+ for WT and mutant PsXDH. Enzyme activities were assayed in the direction of polyol oxidation by measuring the reduction of NAD+ (blue bar) or NADP+ (red bar).

More striking effects of the triple mutant ARS were observed in kinetic constants for both NAD⁺ and NADP⁺. The k_cat/K_m^NAD dropped 15-fold compared with WT by an increase of K_m and a decrease of k_cat. On the other hand, k_cat/K_m^NADP increased dramatically (up to 4100-fold), caused by a large decrease of K_m value and increase of k_cat value. It is noteworthy that k_cat/K_m^NADP was almost identical to that of WT for NAD⁺. There was no difference in the K_m^xylitol values in the presence of NAD⁺ or NADP⁺, although the K_m^xylitol values were slightly higher than that of WT in the presence of NAD⁺. Further introduction of N211R mutation into ARS (ARSdR mutant) produced about a 2-fold decrease in the k_cat/K_m^NAD value mostly because of a dramatic decrease of K_m value compared with WT, whereas no additional change in the kinetics constant for NADP⁺ was observed. Overall, the N211R mutation was not necessary to switch the coenzyme specificity, whereas a more important effect of this mutation was the stabilization of the ARS mutation (see next section).

Effect of the Modification of Coenzyme Specificity on the Thermostability of the Mutant—The thermostability of WT and the 11 mutants was estimated by monitoring the change in the CD signal at 220 nm as the thermal unfolding transition temperature (T_m) (Fig. 4A). Four single mutations produced little effect on thermal denaturation. AR, RS, AiS, and ARS mutants displayed lower T_m values, ranging between 4.1 and 6.3 °C compared with WT. The ARSdR mutant showed almost the same thermostability as WT despite similar kinetic constants to the ARS mutant, suggesting that the addition of the N211R mutation to the ARS mutant would contribute to maintaining thermostability rather than the catalytic property of this enzyme.

View larger version (15K): [in this window] [in a new window]   FIG. 4. Comparison of thermostability for WT and mutant PsXDH. A, Tm. Tm values were determined by CD measurements at 220 nm, whereas the temperature was increased at a rate of 1 °C/min. B, thermal inactivation of WT (•), ARS (), ARSdR (), C4 (), C4/ARS (), and C4/ARSdR (). NAD+ was used as a coenzyme for WT and C4, and NADP+ was used as a coenzyme for ARS, ARSdR, C4/ARS, and C4/ARSdR. Enzyme activities of WT and mutant PsXDH were determined after incubation for 10 min at each temperature. Enzymatic activities were shown as the relative values (means ± S.D., n = 3) expressed as a percent of the controls without heat treatment.

All enzymes of the ADH and PDH subfamily contain one zinc atom involved in catalytic function, whose mechanistic role has been well known (5, 6, 16). There are several enzymes with a second zinc atom (structural zinc atom), although the exact function of the structural zinc atom is less clear. The structural zinc atom is coordinated with four cysteine residues (Cys⁹⁶, Cys⁹⁹, Cys¹⁰², and Cys¹¹⁰) in the B. argentifolii SDH as well as many other structural zinc-containing ADHs (a pattern of CCCC) (Fig. 1 and Table I) (14). There are some substitution patterns of these four cysteines in the PDHs (Table I). Among them, enzymes with the pattern of DSMD, RDCS, RDCT have been shown to have no structural zinc by enzymatic or crystallographic analyses (15, 46, 47). These analyses suggested that four fully conserved cysteine residues are necessary for binding to the structural zinc atom and that PsXDH having a pattern of SSYC has no structural zinc atom. We attempted to generate a C4 mutant in which the zinc atom was introduced by substituting Ser⁹⁶, Ser⁹⁹, and Tyr¹⁰² by cysteine residues, expecting that introduction of the structural zinc atom may increase the thermostability of PsXDH.

Characterization of C4 Mutant—By using a set of two synthetic primers involving the mutations, cysteine ligands for structural zinc were introduced into PsXDH as described under "Experimental Procedures." We determined the binding stoichiometry of zinc for the WT and C4 mutant by atomic absorption spectroscopy. The zinc content value of WT was very close to 1.0 mol of zinc/mol of subunit (Fig. 5A), suggesting that wild-type XDH contains only a catalytic zinc atom. This result was also supported by the observation that the putative binding site for the catalytic zinc atom is conserved completely in PsXDHs (Cys⁴¹, His⁶⁶, and Glu⁶⁷) compared with other MDRs. The zinc content value of the C4 mutant was 1.9 ± 0.1 mol of zinc/mol of subunit, close to 2.0, indicating the acquirement of an additional zinc atom (Fig. 5A). The C4 mutant displayed almost the same kinetic constants for NAD⁺ and substrate as WT. Although the C4 mutant had a 20-fold decrease in the K_m value for NADP⁺ compared with that for WT, the enzyme significantly preferred NAD⁺ to NADP⁺, similar to WT (Table III and Fig. 3). The thermostability of the C4 mutant was estimated from the T_m value by CD measurements and compared with that of WT. The introduction of the structural zinc atom increased the thermostability of the C4 mutant (4.5 °C increase of the T_m value compared with WT) (Fig. 4A). Similar results were obtained by heat treatment of the enzyme; the enzyme activity of WT decreased to 15% after incubation for 10 min at 40 °C, whereas no inactivation of the C4 mutant was detected by the same treatment (Fig. 4B). The level of translational expression of the C4 mutant was 3-fold higher than that of WT (Fig. 2A), suggesting that the stability of the C4 mutant was also increased in vivo. The removal of Zn²⁺ and concomitant enzyme inactivation has been observed in several zinc-containing ADHs and SDHs (47–49). The enzyme activity of WT and the C4 mutant decreased to 50 and 90%, respectively, by treatment with 1 mM EDTA (pH 7.5) (Fig. 5B), suggesting that introduction of the structural zinc atom also provided resistance against the chelating agent for the catalytic zinc atom. The subunit of the G. mastotermitis XDH was found to contain 6 Mg²⁺ ions, although the role is unclear (46). Thus, we also measured the content of magnesium in WT and the C4 mutant of PsXDH, and obtained insignificant values; 0.26 and 0.2 mol of magnesium/mol of subunit (data not shown).

Characterization of C4/ARS and C4/ARSdR Mutants—We attempted to introduce structural zinc into ARS and ARSdR mutants to improve the thermostability of these mutants. By using one KpnI digestion site in the Xyl2 gene, as described under "Experimental Procedures," the C4 mutation was combined with each ARS and ARSdR mutation to construct the C4/ARS (S96C/S99C/Y102C/D207A/I208R/F209S) and C4/AR-SdR (S96C/S99C/Y102C/D207A/I208R/F209S/N211R) mutants, respectively (Table II). Their translational expression levels in E. coli were almost the same as the C4 mutant (Fig. 2A), estimating that the stability in vivo might increase compared with their parent enzymes, ARS and ARSdR. In fact, their T_m values were almost the same as that of the C4 mutant, and in particular, C4/ARS was dramatically stabilized by improving the T_m of 7.7 °C compared with ARS (Fig. 4A). Heat treatment of the enzymes provided similar results; after incubation for 10 min at 45 °C, C4/ARS and C4/ARSdR maintained about half the activity, whereas no enzyme activity of ARS and ARSdR mutants was detected by the same treatment (Fig. 4B). The zinc content of C4/ARS and C4/ARSdR mutants was 1.69 and 1.78 mol of zinc/mol of subunit, respectively, suggesting that their increased thermostability was due to the structural zinc atom introduced (Fig. 5A).

Introduction of the C4 mutation in ARS and ARSdR (C4/ARS and C4/ARSdR, respectively) produced a further 4-fold improvement in the catalytic efficiency for NADP⁺ because of an increase in k_cat values (Table III). It is noteworthy that k_cat/K_m^NADP reached much higher than the initial k_cat/K_m^NAD value of WT (Table III and Fig. 3). This is probably the first report that the catalytic activity of the mutant exceeded the parental activity after the coenzyme specificity changed.

	DISCUSSION

TOP ABSTRACT INTRODUCTION EXPERIMENTAL PROCEDURES RESULTS DISCUSSION REFERENCES

 
In this study we reported the construction of a novel NADP⁺-dependent XDH mutant(s). Complete reversal of the coenzyme specificity was achieved by multiple site-directed mutagenesis of the NAD⁺-dependent wild-type XDH by using NADP⁺(H)-specific SDH as a reference. Furthermore, the introduction of a structural zinc atom to a NADP⁺-dependent mutant(s) produced significant thermostabilization and enhancement of the catalytic activity with NADP⁺.

Complete Reversal of Coenzyme Specificity of PsXDH—The homologous positions in dehydrogenases to Asp²⁰⁷-Ile²⁰⁸ in PsXDH have often been used as candidates for the modification of nicotinamide cofactor specificity in the literature (17–23, 25, 28, 30–32, 34, 36–38). We also observed some significant effects in the AR (D207A/I208R) mutant, but the acquired NADP⁺-dependent activity could not be satisfied compared with the NAD⁺-dependent activity of WT (Table III and Fig. 3).

Dramatic change of the kinetics constants for NADP⁺ between AR and ARS is very interesting (Table III and Fig. 3). The homologous position of Ser²⁰⁹ has not been targeted by site-directed mutagenesis for the reversal of coenzyme specificity in other NAD(P)⁺-dependent dehydrogenases. In fact, there is homologous Ser residue regardless of NAD⁺- and NADP⁺-dependent PDHs (Table I). What is an important factor(s) for the change of the kinetics constants for NADP⁺ between AR and ARS? Because both phenylalanine and tyrosine posses phenyl rings, construction of ARY (D207A/I208R/F209Y) mutant makes it possible to clarify the effect of the introduction of hydroxyl group at position 209 (Table II). Some positive effects were observed in the kinetics constants for NADP⁺ in the ARY but not reached the same level as those of ARS (Table III and Fig. 3). ART (D207A/I208R/F209T) mutant was used for analysis of the effect of side chain volume because the side chain volume of threonine is intermediate between serine and tyrosine (Table II). The k_cat/K_m^NADP value was almost the same as that of ARS. The k_cat values for NADP⁺ was reduced by an order of magnitude from ARS > ART > AR > ARY in agreement with the order of the side-chain volume at position 209 (Table III). These results indicated that not only the hydroxyl group but also the relatively small volume group was required for the side chain of the residue at this position to make hydrogen bonds with amino moiety(s) of the side chain of neighbor amino acid residues (probably Arg²⁰⁸ and Lys²¹² in the ARS mutant) similar to B. argentifolii SDH. Recently, Rosell et al. (37) reported a study about several NAD⁺(H)-dependent mutants of a vertebrate NADP⁺(H)-dependent ADH isozyme 8. For complete reversal of the coenzyme specificity toward NAD⁺(H), substitution of three amino acid residues at homologous positions of Asp²⁰⁷-Ile²⁰⁸-Phe²⁰⁹ in PsXDH was necessary. These results indicated that, in some cases of dehydrogenase, an amino acid residue close to the landmark amino acid residues would also be effective for coenzyme recognition.

Metzger and Hollenberg (50) also attempted to identify a set of amino acid residues in PsXDH for specificity toward NAD⁺. They introduced the potential NADP⁺(H) recognition sequence of E. coli glutathione reductase (no homology with PsXDH) and thermophilic ADH (30% homology) into the homologous sequence in PsXDH, Asp²⁰⁷-Ile²⁰⁸-Phe²⁰⁹-Asp²¹⁰-Asn²¹¹-Lys²¹². Although these recombinant enzymes were not purified, the D207G mutation produced a 10-fold increase in apparent K_m NAD. Because alanine substitution at position 207, either single or multiple, provided only a small change in K_m^NAD (Table III), the D207G/I208R/F209S mutation in PsXDH instead of ARS (D207A/I208R/F209S) possesses one possibility to further improve the NADP⁺ dependence by a decrease of k_cat/K_m^NAD. It is noteworthy that the D207V/I208R/F209S/D210H mutant, which is very similar to the D207A/I208R/F209S (ARS) mutant, was not expressed in the host cell. Generally, there are a few sequence homologies among MDRs at the coenzyme recognition site except some specific residues, although the conformational fold is conserved. B. argentifolii SDH, a reference enzyme in this study, is phylogenetically closer to PsXDH than glutathione reductase and/or ADH, supposing that the step-by-step acquirement of activity with NADP⁺ in PsXDH seems to mimic the natural evolutional process.

Physiological Insight of Structural Zinc in MDR Superfamily—The zinc atom in medium-chain ADHs and SDHs is bound within a protruding loop from the catalytic domain (8, 9, 11, 12) whose corresponding amino acid sequence among all PDHs is conserved regardless of the existence of the zinc atom (Table I). Little insight into the role of the structural zinc atom is known, although the importance for maintaining the quaternary structure of the protein has been proposed (16). For example, human and ADHs as well as B. argentifolii SDH contain structural zinc atoms that are coordinated in four cysteine residues. Jeloková et al. (51) reported no expression in E. coli cells or measurable activity by the mutation of any of the four structural zinc ligands. Furthermore, the same mutations in bacterial phenylacetaldehyde reductase produced a dramatic decrease of activity, less than 4% activity compared with the wild-type enzyme (52). These results indicate that it is impossible to remove the zinc atom without loss of stable folding or enzyme activity. On the other hand, when yeast ADH and thermophilic archaeal Sulfolobus solfataricus ADH are incubated with a chelating reagent, the structural zinc atom is selectively removed with no effect on the catalytic zinc atom or loss of enzyme activity, whereas the enzyme becomes very sensitive to treatment with heat and/or denaturant (48, 53). These different results may reflect the role change of the structural zinc atom in the enzyme during evolution. Human ADHs and bacterial phenylacetaldehyde reductase still depend on the second zinc atom for both stability and enzyme activity. On the other hand, the role is limited for maintaining the stability in yeast and S. solfataricus ADHs. If there had been no significant contribution to enzyme stability and activity, the structural zinc atom would have been lost. In fact, Bacillus subtilis SDH possesses complete conserved amino acid residues for the structural zinc atom but does not have a zinc atom (Table I) (54). The loss of evolutional pressure would allow the four cysteine residues to be substituted randomly with other amino acid residues (Table I). An additional structural zinc atom could easily be introduced in such enzymes by substituting the cysteine residues for corresponding amino acid residues. The resultant stability improvement may originate from the inherent role of structural zinc in ancestral MDR involving PDHs. This study is the first report that the increase of enzyme thermostability was accomplished by introducing an additional zinc ion using site-directed mutagenesis. Because we can identify whether a MDR enzyme contains a structural zinc atom by simple analysis of the amino acid sequence alignment (Table I), this novel strategy for protein stabilization would be applicable for other MDRs that contain no structural zinc atom natively.

Production of Further Improved NADP⁺-Catalysis by the Introduction of an Additional Structural Zinc Atom into NADP⁺-dependent XDH Mutants—As observed in other several dehydrogenases/reductases (18, 19, 34, 35), the modification of coenzyme specificity toward NADP⁺ in PsXDH resulted in a significant loss of thermostability (Fig. 4A) associated with the observation that most mutations tend to affect the stability of protein neutrally and/or negatively. Two novel NADP⁺-dependent PsXDH mutants, ARS and ARSdR, were stabilized by introducing a second structural zinc atom at the potential binding site (Fig. 4). Surprisingly, this stabilization produced further improvement of NADP⁺-dependent activity. Although protein stabilization generally confers rigidity on the protein and subsequently produces increased ligand affinity (55), there is no such change in the kinetic constants of C4/ARS and C4/ARSdR mutants; enhancement of their k_cat/K_m^NADP is mainly due to increased k_cat (Table III). It is noteworthy that the C4 mutation site is separate from ARS/ARSdR sequentially and structurally (Fig. 1 and Table I). Our results suggest the possibility that thermostabilization can enhance the catalytic activity of enzymes, which modified the coenzyme specificity in other dehydrogenases/reductases.

Application of Xylose Fermentation by S. cerevisiae—It is known that in bacteria xylose is metabolized by xylose isomerase (EC 5.3.1.5 [EC] ), which directly converts xylose into xylulose with no coenzyme (Scheme 1). However, because there has been no report of the significant expression of any bacterial xylose isomerase as an active form in S. cerevisiae except a thermophilic enzyme (56), we focused on the fungal xylose metabolic pathway in this study. XDH and xylose reductase in this fungal pathway are necessary for S. cerevisiae to ferment xylose to ethanol because of a lack of genes encoding these enzymes in S. cerevisiae (Scheme 1). Several studies also reported that the introduction of genes encoding related enzymes such as xylulokinase (XKS1), transketolase (TKL1), transaldolase (TAL1), and several hexose transporters (HXT1–7) improved the efficiency of ethanol fermentation (2, 4). However, S. cerevisiae transforming the genes encoding xylose reductase, XDH and xylulokinase, a most potent recombinant strain, has not yet been applied to the industrial bio-process due to the unfavorable excretion of xylitol. Because intercellular redox imbalance caused by the different coenzyme specificity of xylose reductase and XDH has been thought to be one of the main factors of xylitol excretion (2), the introduction of NADP⁺-dependent XDH generated in this study is expected to prevent this excretion by maintaining the intercellular redox balance. Walfridsson et al. (57) reported that the overexpression of XDH in S. cerevisiae could prevent xylitol formation, although only a slight enhancement of ethanol yield was achieved. It is well known that there is a relationship between the intercellular expression level and thermostability in vitro mainly due to the resistance against proteolysis. Three thermostable mutants containing C4 mutation (C4, C4/ARS, and C4/ARSdR) were expressed much more highly than each parent enzyme in E. coli cells (Fig. 2A), suggesting the possibility that the introduction of such thermostable enzymes can contribute to increase the expression of XDH in S. cerevisiae and improve the efficiency of ethanol fermentation.

	FOOTNOTES

 
^* This work was supported in part by the Center of Excellence (COE) program of the "Establishment of COE on Sustainable-Energy System," grant-in-aid for Scientific Research, and Grants for Regional Science and Technology Promotion from the Ministry of Education, Science, Sports, and Culture, Japan. This work was also supported by CREST of Japan Science and Technology Corp. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

^|| To whom correspondence should be addressed: Institute of Advanced Energy, Kyoto University, Gokasyo, Uji, Kyoto 611-0011 Japan. Tel.: 81-774-38-3517; Fax: 81-774-38-3524; E-mail: kmak{at}iae.kyoto-u.ac.jp.

¹ The abbreviations used are: XDH, xylitol dehydrogenase; PsXDH, XDH from P. stipitis; MDR, medium-chain dehydrogenase/reductase; PDH, polyol dehydrogenase; ADH, alcohol dehydrogenase; SDH, sorbitol dehydrogenase; WT, wild-type enzyme; AR, D207A/I208R mutant; AiS, D207A/F209S mutant; RS, I208R/F209S mutant; ARS, D207A/I208R/F209S mutant; ART, D207A/I208R/F209T mutant; ARY, D207A/I208R/F209Y mutant; ARSdR, D207A/I208R/F209S/N211R mutant; C4, S96C/S99C/Y102C mutant; C4/ARS, mutant containing C4 and ARS mutations; C4/ARSdR, mutant containing C4 and ARSdR mutations; CD, circular dichroism; T_m, thermal unfolding transition temperature; M. morganii, Morganella morganii; S. pombe, Schizosaccharomyces pombe; E. japonica; Eriobotrya japonica; H. jecorina, Hypocrea jecorina.

	REFERENCES

TOP ABSTRACT INTRODUCTION EXPERIMENTAL PROCEDURES RESULTS DISCUSSION REFERENCES

 

1. Ingram, L. O., Gomez, P. F., Lai, X., Moniruzzaman, M., Wood, B. E., Yomano, L. P., and York, S. W. (1998) Biotechnol. Bioeng. 58, 204–214[CrossRef][Medline] [Order article via Infotrieve]
2. Ostergaard, S., Olsson, L., and Nielsen, J. (2000) Microbiol. Mol. Biol. Rev. 64, 34–50[Abstract/Free Full Text]
3. Zaldivar, J., Nielsen, J., and Olsson, L. (2001) Appl. Microbiol. Biotechnol. 56, 17–34[CrossRef][Medline] [Order article via Infotrieve]
4. Jeffries, T. W., and Jin, Y. S. (2004) Appl. Microbiol. Biotechnol. 63, 495–509[CrossRef][Medline] [Order article via Infotrieve]
5. Nordling, E., Jornvall, H., and Persson, B. (2002) Eur. J. Biochem. 269, 4267–4276[Medline] [Order article via Infotrieve]
6. Riveros-Rosas, H., Julian-Sanchez, A., Villalobos-Molina, R., Pardo, J. P., and Pina, E. (2003) Eur. J. Biochem. 270, 3309–3334[Medline] [Order article via Infotrieve]
7. Hurley, T. D., Bosron, W. F., Hamilton, J. A., and Amzel, L. M. (1994) Proc. Natl. Acad. Sci. U. S. A. 88, 8149–8153
8. Yang, Z. N., Bosron, W. F., and Hurley, T. D. (1997) J. Mol. Biol. 265, 330–343[CrossRef][Medline] [Order article via Infotrieve]
9. Korkhin, Y., Kalb (Gilboa), A. J., Peretz, M., Bogin, O., Burstein, Y., and Frolow, F. (1998) J. Mol. Biol. 278, 967–981[CrossRef][Medline] [Order article via Infotrieve]
10. Svensson, S., Hoog, J. O., Schneider, G., and Sandalova, T. (2000) J. Mol. Biol. 302, 441–453[CrossRef][Medline] [Order article via Infotrieve]
11. Esposito, L., Sica, F., Raia, C. A., Giordano, A., Rossi, M., Mazzarella, L., and Zagari, A. (2002) J. Mol. Biol. 318, 463–477[CrossRef][Medline] [Order article via Infotrieve]
12. Guy, J. E., Isupov, M. N., and Littlechild, J. A. (2003) J. Mol. Biol. 331, 1041–1051[CrossRef][Medline] [Order article via Infotrieve]
13. Rosell, A., Valencia, E., Pares, X., Fita, I., Farres, J., and Ochoa, W. F. (2003) J. Mol. Biol. 330, 75–85[CrossRef][Medline] [Order article via Infotrieve]
14. Banfield, M. J., Salvucci, M. E., Baker, E. N., and Smith, C. A. (2001) J. Mol. Biol. 306, 239–250[CrossRef][Medline] [Order article via Infotrieve]
15. Pauly, T. A., Ekstrom, J. L., Beebe, D. A., Chrunyk, B., Cunningham, D., Griffor, M., Kamath, A., Lee, S. E., Madura, R., Mcguire, D., Subashi, T., Wasilko, D., Watts, P., Mylari, B. L., Oates, P. J., Adams, P. D., and Rath, V. L. (2003) Structure 11, 1071–1085[Medline] [Order article via Infotrieve]
16. Eklund, H., Horjales, E., Jörnvall, H., Brändén, C.-I., and Jeffery, J. (1985) Biochemistry 24, 8005–8012[CrossRef][Medline] [Order article via Infotrieve]
17. Scrutton, N. S., Berry, A., and Perham, R. N. (1990) 343, 38–43
18. Chen, Z., Lee, W. R., and Chang, S. H. (1991) Eur. J. Biochem. 202, 263–267[Medline] [Order article via Infotrieve]
19. Grimshaw, C. E., Matthews, D. A., Varughese, K. I., Skinner, M., Xuong, N. H., Bray, T., Hoch, J., and Whiteley, J. M. (1992) J. Biol. Chem. 267, 15334–15339[Abstract/Free Full Text]
20. Bocanegra, J. A., Scrutton, N. S., and Perham, R. N. (1993) Biochemistry 32, 2737–2740[CrossRef][Medline] [Order article via Infotrieve]
21. Nishiyama, M., Birktoft, J. J., and Beppu, T. (1993) J. Biol. Chem. 268, 4656–4660[Abstract/Free Full Text]
22. Lauvergeat, V., Kennedy, K., Feuillet, C., McKie, J. H., Gorrichon, L., Baltas, M., Boudet, A. M., Grima-Pettenati, J., and Douglas, K. T. (1995) Biochemistry 34, 12426–12434[CrossRef][Medline] [Order article via Infotrieve]
23. Chen, R., Greer, A., and Dean, A. M. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 12171–12176[Abstract/Free Full Text]
24. Hurley, J. H., Chen, R., and Dean, A. M. (1996) Biochemistry 35, 5670–5678[CrossRef][Medline] [Order article via Infotrieve]
25. Galkin, A., Kulakova, L., Ohshima, T., Esaki, N., and Soda, K. (1997) Protein Eng. 10, 687–690[Abstract/Free Full Text]
26. Wiegert, T., Sahm, H., and Sprenger, G. A. (1997) J. Biol. Chem. 272, 13126–13133[Abstract/Free Full Text]
27. Danielson, U. H., Jiang, F., Hansson, L. O., and Mannervik, B. (1999) Biochemistry 38, 9254–9263[CrossRef][Medline] [Order article via Infotrieve]
28. Holmberg, N., Ryde, U., and Bulow, L. (1999) Protein Eng. 12, 851–856[Abstract/Free Full Text]
29. Zhang, L., Ahvazi, B., Szittner, R., Vrielink, A., and Meighen, E. (1999) Biochemistry 38, 11440–11447[CrossRef][Medline] [Order article via Infotrieve]
30. Schepens, I., Johansson, K., Decottignies, P., Gillibert, M., Hirasawa, M., Knaff, D. B., and Miginiac-Maslow, M. (2000) J. Biol. Chem. 275, 20996–21001[Abstract/Free Full Text]
31. Wang, H., Lei, B., and Tu, S. C. (2000) Biochemistry 39, 7813–7819[CrossRef][Medline] [Order article via Infotrieve]
32. Huang, Y. W., Pineau, I., Chang, H. J., Azzi, A., Bellemare, V., Laberge, S., and Lin, S. X. (2001) Mol. Endocrinol. 15, 2010–2020[Abstract/Free Full Text]
33. Banta, S., Swanson, B. A., Wu, S., Jarnagin, A., and Anderson, S. (2002) Biochemistry 41, 6226–6236[CrossRef][Medline] [Order article via Infotrieve]
34. Serov, A. E., Popova, A. S., Fedorchuk, V. V., and Tishkov, V. I. (2002) Biochem. J. 367, 841–847[CrossRef][Medline] [Order article via Infotrieve]
35. Steen, I. H., Lien, T., Madsen, M. S., and Birkeland, N. K. (2002) Arch. Microbiol. 178, 297–300[CrossRef][Medline] [Order article via Infotrieve]
36. Cho, H., Oliveira, M. A., and Tai, H. H. (2003) Arch. Biochem. Biophys. 419, 139–146[Medline] [Order article via Infotrieve]
37. Rosell, A., Valencia, E., Ochoa, W.F., Fita, I., Pares, X., and Farres, J. (2003) J. Biol. Chem. 278, 40573–40580[Abstract/Free Full Text]
38. Woodyer, R., van der Donk, W. A., and Zhao, H. (2003) Biochemistry 42, 11604–11614[CrossRef][Medline] [Order article via Infotrieve]
39. Baker, P. J., Britton, K. L., Rice, D. W., Rob, A., and Stillman, T. J. (1992) J. Mol. Biol. 228, 662–671[CrossRef][Medline] [Order article via Infotrieve]
40. Wolfe, G. R., Smith, C. A., Hendrix, D. L., and Salvucci, M. E. (1999) Insect Biochem. Mol. Biol. 29, 113–120[CrossRef][Medline] [Order article via Infotrieve]
41. Rizzi, M., Harwart, K., Erlemann, P., Bui-Thanh, N. A., and Dellweg, H. (1989) J. Ferment. Bioeng. 67, 20–24[CrossRef]
42. Kotter, P., Amore, R., Hollenberg, C. P., and Ciriacy, M. (1990) Curr. Genet. 18, 493–500[CrossRef][Medline] [Order article via Infotrieve]
43. Penning, T. M., and Jez, J. M. (2001) Chem. Rev. 101, 3027–3046[CrossRef][Medline] [Order article via Infotrieve]
44. Lowry, O. H., Rosebrough, N. J., Farr, A. L., and Randall, R. J. (1951) J. Biol. Chem. 193, 265–275[Free Full Text]
45. Laemmli, U. K. (1970) Nature 227, 680–685[CrossRef][Medline] [Order article via Infotrieve]
46. Lunzer, R., Mamnun, Y., Haltrich, D., Kulbe, K. D., and Nidetzky, B. (1998) Biochem. J. 336, 91–99
47. Johansson, K., El-Ahmad, M., Kaiser, C., Jornvall, H., Eklund, H., Hoog, J., and Ramaswamy, S. (2001) Chem. Biol. Interact. 130–132, 351–358
48. Magonet, E., Hayen, P., Delforge, D., Delaive, E., and Remacle, J. (1992) Biochem. J. 287, 361–365
49. Marini, I., Bucchioni, L., Borella, P., Del Corso, A., and Mura, U. (1997) Arch. Biochem. Biophys. 340, 383–391[Medline] [Order article via Infotrieve]
50. Metzger, M. H., and Hollenberg, C. P. (1995) Eur. J. Biochem. 228, 50–54[Medline] [Order article via Infotrieve]
51. Jeloková, J., Karlsson, C., Estonius, M., Jornvall, H., and Hoog, J. O. (1994) Eur. J. Biochem. 225, 1015–1019[Medline] [Order article via Infotrieve]
52. Wang, J. C., Sakakibara, M., Matsuda, M., and Itoh, N. (1999) Biosci. Biotechnol. Biochem. 63, 2216–2218[CrossRef][Medline] [Order article via Infotrieve]
53. Ammendola, S., Raia, C. A., Caruso, C., Camardella, L., D'Auria, S., De Rosa, M., and Rossi, M. (1992) Biochemistry 31, 12514–12523[CrossRef][Medline] [Order article via Infotrieve]
54. Ng, K., Ye, R., Wu, X. C., and Wong, S. L. (1992) J. Biol. Chem. 267, 24989–24994[Abstract/Free Full Text]
55. Fields, P. A., and Somero, G. N. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 11476–11481[Abstract/Free Full Text]
56. Walfridsson, M., Bao, X., Anderlund, M., Lilius, G., Bulow, L., and Hahn-Hagerdal, B. (1996) Appl. Environ. Microbiol. 62, 4648–4651[Abstract]
57. Walfridsson, M., Anderlund, M., Bao, X., and Hahn-Hagerdal, B. (1997) Appl. Microbiol. Biotechnol. 48, 218–224[CrossRef][Medline] [Order article via Infotrieve]

CiteULike

Complore

Connotea

Del.icio.us

Digg

Reddit

Technorati

This article has been cited by other articles:

				A. Matsushika, H. Inoue, S. Watanabe, T. Kodaki, K. Makino, and S. Sawayama Efficient Bioethanol Production by a Recombinant Flocculent Saccharomyces cerevisiae Strain with a Genome-Integrated NADP+-Dependent Xylitol Dehydrogenase Gene Appl. Envir. Microbiol., June 1, 2009; 75(11): 3818 - 3822. [Abstract] [Full Text] [PDF]

				N. Higashi, K. Tanimoto, M. Nishioka, K. Ishikawa, and M. Taya Investigating a Catalytic Mechanism of Hyperthermophilic L-Threonine Dehydrogenase from Pyrococcus horikoshii J. Biochem., July 1, 2008; 144(1): 77 - 85. [Abstract] [Full Text] [PDF]

				S. Watanabe, A. Abu Saleh, S. P. Pack, N. Annaluru, T. Kodaki, and K. Makino Ethanol production from xylose by recombinant Saccharomyces cerevisiae expressing protein-engineered NADH-preferring xylose reductase from Pichia stipitis Microbiology, September 1, 2007; 153(9): 3044 - 3054. [Abstract] [Full Text] [PDF]

				S. Singh, S. Korolev, O. Koroleva, T. Zarembinski, F. Collart, A. Joachimiak, and D. Christendat Crystal Structure of a Novel Shikimate Dehydrogenase from Haemophilus influenzae J. Biol. Chem., April 29, 2005; 280(17): 17101 - 17108. [Abstract] [Full Text] [PDF]

This Article Abstract Full Text (PDF) All Versions of this Article: 280/11/10340    most recent M409443200v1 Submit a Letter to Editor Alert me when this article is cited Alert me when eLetters are posted Alert me if a correction is posted Citation Map Services Email this article to a friend Similar articles in this journal Similar articles in PubMed Alert me to new issues of the journal Download to citation manager Request Permissions Citing Articles Citing Articles via HighWire Citing Articles via Google Scholar Google Scholar Articles by Watanabe, S. Articles by Makino, K. Search for Related Content PubMed PubMed Citation Articles by Watanabe, S. Articles by Makino, K. Social Bookmarking                      What's this?