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J. Biol. Chem., Vol. 280, Issue 11, 10572-10577, March 18, 2005
Gene Trap Mutagenesis-based Forward Genetic Approach Reveals That the Tumor Suppressor OVCA1 Is a Component of the Biosynthetic Pathway of Diphthamide on Elongation Factor 2*![]() ![]() ![]()
From the
Received for publication, November 17, 2004 , and in revised form, December 14, 2004.
OVCA1 is a tumor suppressor identified by positional cloning from chromosome 17p13.3, a hot spot for chromosomal aberration in breast and ovarian cancers. It has been shown that expression of OVCA1 is reduced in some tumors and that it regulates cell proliferation, embryonic development, and tumorigenesis. However, the biochemical function of OVCA1 has remained unknown. Recently, we isolated a novel mutant resistant to diphtheria toxin and Pseudomonas exotoxin A from the gene trap insertional mutants library of Chinese hamster ovary cells. In this mutant, the Ovca1 gene was disrupted by gene trap mutagenesis, and this disruption well correlated with the toxin-resistant phenotype. We demonstrated direct evidence that the tumor suppressor OVCA1 is a component of the biosynthetic pathway of diphthamide on elongation factor 2, the target of bacterial ADP-ribosylating toxins. A functional genetic approach utilizing the random gene trap mutants library of mammalian cells should become a useful strategy to identify the genes responsible for specific phenotypes.
OVCA1 is a tumor suppressor isolated from chromosome 17p13.3, a hot spot for chromosomal aberration in breast and ovarian cancers (1, 2). It has been shown that expression of OVCA1 is reduced in tumors and that exogenous expression of OVCA1 inhibited growth of ovarian cancer cells (3). Furthermore, a study using Ovca1 gene knock-out mice clearly showed that OVCA1 regulates cell proliferation, embryonic development, and tumorigenesis (4). Even though the biological or cell biological functions have been elucidated, the biochemical function of OVCA1 has not been ascertained. Diphthamide is a unique post-translationally modified histidine residue found only on translational elongation factor 2 (EF-2),1 which catalyzes the translocation of peptidyl tRNA from the ribosome A site to the P site during peptide chain elongation. Diphthamide has been found in all eukaryote and archaebacteria, however not in eubacteria. The diphtheria toxin (DT) and Pseudomonas exotoxin A (ETA) inactivate EF-2 by ADP-ribosylating the diphthamide (5, 6). The biosynthesis of diphthamide is one of the most complex post-translational modifications, and by genetic complementation analyses it has been shown that five different genes in yeast (7) and at least three genes in CHO cells (8) are involved in diphthamide synthesis. To date, three genes responsible for diphthamide formation have been elucidated in yeast and human (911). The biochemical function of diphthamide as a target of bacterial ADP-ribosylating toxins has been well characterized; however, its physiological role in cells has remained to be clarified.
Bacterial toxins are useful and valuable tools for investigating cell functions; important knowledge concerning cell functions has been obtained by analyses of mutants of established cell lines. Indeed, much of knowledge concerning the mechanisms of toxicity of DT has been elucidated by the study of toxin-resistant mutants (7, 8, 1218). Although many of the DT-resistant mutants have been isolated, to clarify the genes involved in DT sensitive and/or resistant phenotype was time consuming and sometimes difficult work, especially in mammalian cells. To increase the efficiency of insertional mutagenesis in mammalian cells, retrovirus gene trap vectors have been developed (19, 20). Gene traps are based on the integration of a reporter gene lacking a promoter into the genome and its expression from a tagged endogenous promoter. When a gene trap vector integrates into expressed genes, insertional mutants can be easily selected by selectable phenotype conferred by the gene trap vector. It is possible to increase the proportion of cells with virus-induced mutations to two to three orders of magnitude higher than in cells containing unselected proviruses by retroviral gene trap selection (21). So far, mutants having a variety of phenotypes have been isolated from CHO cells. This is because CHO cells are hypodiploid and functionally hemizygous at a number of loci (22, 23). For that reason it was expected that a single gene trap insertional mutagenetic event might result in loss of gene functions in CHO cells. To identify the obligate genes involved in DT sensitivity and/or resistance, including diphthamide biosynthesis, we screened mutants resistant to DT from a random gene trap insertional mutants library of CHO cells. Recently, we have been able to isolate a novel mutant resistant to DT and ETA in which a mutant Ovca1 gene was disrupted by gene trap mutagenesis. Here we show genetic and biochemical evidence that the tumor suppressor OVCA1 is a component of the biosynthetic pathway of diphthamide on EF-2, the target of bacterial ADP-ribosylating toxins.
Cells and Cell CultureCHO-K1 cells were obtained from the American Type Culture Collection. CHO-K1 cells and mutants were maintained in Dulbecco's modified Eagle's medium supplemented with 8% fetal calf serum, 2 mM glutamine, and antibiotics (penicillin and streptomycin).
Retroviral Gene Trap Insertional MutagenesisThe retroviral gene trap vector, ROSA ToxinsDT and fragment A of DT were purified by DEAE-cellulose column chromatography (14). ETA was purchased from List Biological Laboratories. Selection and Cloning of Diphtheria Toxin-resistant CellsToxinresistant CHO mutants were isolated from the gene trap insertional mutants library. Inocula of 106 gene trap mutagenized CHO cells were incubated for 610 h before the addition of 1 µg/ml of DT. After about 2 weeks of selection, colonies were isolated with cloning rings, and each isolated clone was cultured in DT-free medium. Cytotoxicity Assay with MTTToxin-induced cytotoxicity was evaluated by conventional 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) dye reduction assay. Cells were seeded in 96-microwell plates at a density of 4 x 103/well in Dulbecco's modified Eagle's medium with 8% fetal calf serum. After 16-h incubation, the medium was replaced and cells were exposed to serial dilutions of DT or ETA (01000 ng/ml) for 48 h. Then 10 µl of 0.4% MTT reagent and 0.1 M sodium succinate were added to each well. After 90-min incubation, 150 µl of Me2SO were added to dissolve the purple formazan precipitate. Formazan dye was measured spectrophotometrically (570650 nm) using the MAXline Microplate Reader (Molecular Devices, Sunnyvale, CA) (11, 24).
Southern Blot AnalysisGenomic DNA was isolated from CHO cells using PUREGENE DNA isolation kits (Gentra), digested with EcoRI, separated by electrophoresis on 0.8% agarose gel, and transferred to a nylon membrane. A 0.8-kbp PCR fragment of the Neor gene, amplified with primers 5'-AACCATGGGATCGGCCATTGAACA-3' and 5'-AGGATCCGCGAAGAACTCGTCAAGAAGGC-3' from pROSA
5'-Rapid Amplification of cDNA Ends (RACE), Cloning, and Sequence5'-RACE analyses were conducted using the 5'-Full RACE core set (Takara Biomedicals) with total RNAs from DTR44 cells following the manufacturer's instructions. Total RNAs were prepared from mutant cells with Sepasol RNA I (Nacalai Tesque). Single strand cDNAs were prepared from the total RNAs (
PCR Analyses of Chimera RNA and Genome DNATotal RNAs were reverse transcribed and amplified by using an RNA PCR kit (Takara Biomedicals). Genome DNAs were prepared from CHO cells using PUREGENE DNA isolation kits (Gentra). For PCR amplification of the cDNA and genome DNA, the following Ovca1 and
cDNA Expression ExperimentsThe mouse Ovca1 (Ovca1 (m)), human DPH2L2 (DPH2L2 (h)), and mouse dph2l2 (dph2l2 (m)) cDNA expression vectors were constructed as described below. First, the cDNAs used in the expression experiments were RT-PCR amplified from the mouse kidney and human fibroblast mRNAs. The mRNAs were reverse transcribed with oligo dT primer and avian myeloblastosis virus reverse transcriptase. The mouse Ovca1 cDNA fragments were amplified using 5'-primers for without tag Ovca1 (5'-ATGCTAGCGTGATGGCGGCGCTGGTTGTGT-3' (the NheI site is underlined, and the start codon is in boldface)) or for with FLAG-tagged Ovca1 (5'-ATGCTAGCATGGCGGCGCTGGTTGTGTC-3' (the NheI site is underlined and the start codon is in boldface)) and a 3'-primer (5'-ATGGATCCCCCTGCTGCTCTGGCCCTCTCA-3' (the BamHI site is underlined)). The amplified cDNA fragments were then digested by NheI and BamHI and cloned into the NheI and BamHI sites of pIREShyg3 (Clontech) or pFLAG-IREShyg3. The pFLAG-IREShyg3 plasmid was constructed as follows. Oligonucleotides, 5'-AGCTTAAGTCCACCATGGATTACAAGGATGACGAC-3' (the AflII site is underlined, and the start codon is in boldface) and 5'-TAGCTAGCGATCTTATCGTCGTCATCCTTGTAATC-3' (the NheI site is underlined) were annealed, purified by PAGE, digested by AflII and NheI, and cloned into AflII and NheI sites of pIREShyg3. The mouse dph2l2 cDNA fragment was amplified using a 5'-primer (5'-ATGCTAGCAAGCTGCGCCCAATGGAGTCTA-3' (the NheI site is underlined and the start codon is in boldface)) and a 3'-primer (5'-CTGATATCCAGACTTATCACTCTGGCTC-3': the EcoRV site is underlined)). The amplified cDNA fragment was digested by NheI and EcoRV and cloned into the NheI and EcoRV sites of pIRESHyg3. The human DPH2L2 cDNA fragment was amplified using a 5'-primer (5'-CATGGATCCCAAGCTGTGCCTCATGGAGTC-3' (the BamHI site is underlined and the start codon is in boldface) and a 3'-primer (5'-GATCTCGAGCACATGGTATCAGCCGCTTCC-3' (the XhoI site is underlined)). The amplified cDNA fragment was digested by BamHI and XhoI and cloned into the BamHI and XhoI sites of pcDNA3.1/Hygro (+) (Invitrogen). These expression plasmid constructs were confirmed by restriction enzyme map and sequencing and were transfected into CHO cells using Lipofectamine reagent (Invitrogen). Stably transfected cells were selected by hygromycin B (400 µg/ml) for 1014 days. Hygromycin-resistant colonies were isolated and analyzed. Western Blot AnalysisCHO cells grown in 24-well plates were incubated with or without 1 µg/ml DT at 37 °C for 1 h, and the cells were washed and lysed by 100 µl/ml radioimmune precipitation assay buffer. Cell lysates were separated by native PAGE or SDS-PAGE and transferred to a nylon membrane (Hybond-P, Amersham Biosciences). Membranes were blocked in appropriate blocking buffers and incubated with goat anti EF-2 antibody (sc-13004, Santa Cruz Biotechnology) followed by peroxidase-conjugated anti-goat antibody. Reactive bands were detected by enhanced chemiluminescence (Amersham Biosciences). In Vitro ADP-ribosylating AssayCHO cell lysates preparation and ADP-ribosylation reaction of EF-2 were performed as described previously (15, 16). Cell lysates were incubated with [adenylate-14C]NAD (Amersham Biosciences, 248 mCi/mmol, catalog no. CFA 497) in the absence or presence of DT fragment A. The amount of ADP-ribosylated EF-2 was assessed by counting the radioactivity incorporated to the acid insoluble fraction in a liquid scintillation counter (Aloka, LSC-3500). ADP ribosylation of EF-2 was confirmed by SDS-PAGE followed by autoradiography.
Isolation of the Diphtheria Toxin-resistant MutantsThe random gene trap insertional mutants library of CHO cells was made by infecting the ROSA geo (20) followed by growth in G418 as described under "Experimental Procedures." By combining the cells from 1 x 106 independent G418-resistant colonies, we constructed a library of mutants. The gene trap mutagenized cells were inoculated at 20 x 105 cells per 100-mm culture dish and selected with DT. Colonies, 10 per dish, were observed 1014 days later. A total of 24 clones were picked randomly from the 1 x 106 mutant library cells (Fig. 1A). One of these mutants, DTR44, was completely resistant to DT and ETA (Fig. 1, C and D). Southern blot analysis with a Neor gene fragment as a probe showed multiple insertions (>8 copies) in the DTR44 genome (Fig. 1B).
Identification of the Disrupted Gene in DTR44 CellsTo identify the gene responsible for multiple toxin resistance in DTR44, we amplified the trapped sequences with a gene trap vector, ROSA geo, using 5'-RACE. A major PCR product was amplified from the DTR44 cDNA (data not shown) and 128-bp trapped sequences (DDBJ accession number AB194396
[GenBank]
) were clarified by sequencing. BLAST search revealed that 76 bp (number 53 to 128) of these 128-bp trapped sequences strongly matched those of the first exon of the mouse (25) and human OVCA1 genes (Fig. 2A). The amino acids sequence of Chinese hamster OVCA1 protein in this region completely matched with that of mouse OVCA1, and 85% of these amino acids are identical to those of human OVCA1 protein (Fig. 2A).
The existence of the Ovca1- Disruption of the Ovca1 Gene Renders a Toxin-resistant PhenotypeTo define the role of OVCA1 in DTR44, Ovca1 cDNA expression plasmids were constructed and transfected into DTR44 cells; stable transformants were then established by selecting with hygromycin B (400 µg/ml). Stable transfectant colonies were picked and evaluated for sensitivity to the toxins. The majority of clones arising from DTR44 cells transfected with Ovca1 cDNA regained sensitivity to DT and ETA (Fig. 3A). In contrast, in cells transfected with the empty vector or DPH2L2, proteins that have higher similarity to DPH2 than OVCA1 (26), expression vector remained toxinresistant (Fig. 3A).
Cytotoxicities of DT or ETA to DTR44 cells and the clones of DTR44 transfected with OVCA1 expression constructs were further analyzed by MTT assay. Clones R1 and R2, DTR44 stable transformants of mouse Ovca1 cDNA expression vector, regained their parental sensitivity and were fully sensitive to DT and ETA (Fig. 3, C and D).
The presence of Ovca1- OVCA1 Is Required for Diphthamide BiosynthesisDTR44 cells showed the characteristics of the DTRII phenotype, that is, multiple toxin resistances and a resistant to high concentrations of toxins. DTRII mutants have shown that DT sensitivity was affected at the level of EF-2 (8, 12, 13, 1518). To determine whether DTR44 cells are altered in their susceptibility of EF-2 to ADP-ribosylation, CHO cell extracts were assayed for transfer of radiolabeling from NAD+ to EF-2. Lysates were incubated with [adenylate-14C]NAD in the absence or presence of DT fragment A. The amount of ADP-ribosylated EF-2 was assessed by counting the radioactivity incorporated to the acid insoluble fraction with a liquid scintillation counter (Fig. 4A). ADP ribosylation of EF-2 was confirmed by SDS-PAGE followed by autoradiography. (Fig. 4B).
ADP-ribosylation assay clearly showed that ADP-ribosylated acceptor activity in DTR44 cell lysate was dramatically reduced compared with that of wild type parental CHO cells (Fig. 4, A and B). Furthermore, the non-ribosylatable EF-2 from DTR44 cells restored the ADP-ribosyl acceptor activity when transfected with OVCA1 expression vector (Fig. 4, A and B). From these observations, we concluded that DTR44 cells are defective in diphthamide formation on EF-2 and that OVCA1 is required for the biosynthesis of diphthamide. Identification of Intermediate in Diphthamide Synthesis ADP-ribosylated, the non-ADP-ribosylated form, and biosynthetic intermediate of diphthamide on EF-2 have been shown to be easily distinguished by native PAGE followed by Western blotting using an anti-EF-2 antibody (11). Using this detection system, we examined the diphthamide biosynthetic intermediate in DTR44 cells. ADP-ribosylated EF-2 has two added negative charges compared with EF-2, and this increased negative charge could be detected as faster migration on native PAGE. The EF-2 of DTR44 migrates between the ADP-ribosylated and non-ADP-ribosylated forms (Fig. 4C). This observation further confirmed that OVCA1 is required for the biosynthesis of diphthamide on EF-2, the target site for the ADP-ribosylating bacterial protein toxins.
To elucidate the molecular mechanisms underlying DT sensitivity and/or resistance, including diphthamide biosynthesis, we screened mutants resistant to DT from a library of random gene trap insertional mutants of CHO cells. CHO cells are functionally hemizygous at a number of loci (22, 23). It was expected that a single integration event of gene trap retrovirus might result in the loss of gene function in CHO cells, and we would be able to get mutants with specific phenotype by proper selection from this library of mutant cells. DTR44 mutant cells isolated from the gene trap insertional mutants library showed a phenotype with multiple toxin resistance to DT and ETA. It was revealed that the Ovca1 gene was disrupted by gene trap mutagenesis and that the expression of OVCA1 fully recovered the sensitivity to toxins and EF-2 diphthamide formation. These genetic and biochemical data clearly show that the tumor suppressor OVCA1 is a component of the biosynthetic pathway of diphthamide on EF-2.
So far the amino acid sequences of OVCA1 did not reveal any functional protein domains suggesting its biochemical function except for low level sequence similarity (
The retroviral gene trap mutagenesis approach described in this study is relatively simple and straightforward. Even though multiple copies of gene trap vectors are integrated into DTR44 mutant genome (Fig. 1B), we could easily identify the obligate gene for DT-resistant phenotype in DTR44 cells by analyzing the trapped sequences in the chimera RNA produced by gene trap mutagenesis. Retroviruses can be used as insertional mutagens to isolate specific genes in mammalian cells. However, in practice, conventional retroviruses are inefficient mutagens (27). In ROSA After the isolation of the Ovca1 gene (1, 2), the biological functions of OVCA1 were clarified by cell biological analyses and the study of gene knock-out mice. It was speculated that the loss or haploinsufficiency of OVCA1 might be an important event in ovarian tumorigenesis from the observation that expression of OVCA1 protein in ovarian tumor tissues or cell lines was reduced (3). It was also seen that exogenous expression of OVCA1 in ovarian cancer cells causes suppression of cell growth with an increased number of cells in G1 phase of the cell cycle, suggesting that OVCA1 may play a role in the control of cell cycle/cell growth (3). Furthermore, study using knock-out mice demonstrated that OVCA1 regulates cell proliferation, embryonic development, and tumorigenesis (4).
The fact that the tumor suppressor OVCA1 is involved in diphthamide biosynthesis on EF-2 suggests the possibility that aberrations in translational regulation may be one of the molecular mechanisms underlying the tumorigenesis caused by the defect of OVCA1. So far it has been elucidated that components of the protein synthesis apparatus seem to be involved in the control of cell proliferation, and aberrations in protein synthesis are commonly encountered in established cancers (28). Furthermore, it has been demonstrated that removal of regulation of the expression of components of the translational machinery, such as elongation factor-1 It has also been demonstrated that the activity of EF-2 kinase was markedly increased in several forms of malignancies and that inhibition of EF-2 kinase inhibited the growth of a variety of cancer cell lines (28, 3032). Phosphorylation of EF-2 by EF-2 kinase results in a drastic inhibition of protein synthesis, and dephosphorylation of EF-2 by phosphatase restores its activity. The phosphorylation of EF-2 directly affects the elongation stage of translation, and this represents a novel mechanism of translational control (33). It is possible to speculate that the defect of OVCA1 also disturbs the translational regulation through the abnormal diphthamide formation on EF-2 and results in the cause of tumorigenesis. The fact that OVCA1 is a component of diphthamide biosynthetic pathway may also provide an important clue for a better understanding of the biological function of diphthamide. The biosynthesis of diphthamide represents one of the most complex post-translational modifications of an amino acid known to date and is widely well conserved (5, 6), suggesting that it has real importance for biological function. However, the function and role of diphthamide in cellular physiology still remains obscure. Thus far, the existence of endogenously ADP-ribosylated EF-2 and cellular ADP-ribosyltransferase activity has been found in a variety of animals and tissues. The enzyme transfers ADP-ribose from NAD to elongation factor 2, inactivating the factor like bacterial toxins (3436). However, the nature of the cellular ADP-ribosyltransferase and its physiological significance remain unknown. To clarify that the effect on cell proliferation, embryonic development, and tumorigenesis observed in the Ovca1 knock-out mice (4) truly result from the defect of diphthamide, the generation of mice lacking other genes in the diphthamide biosynthesis may be helpful. The finding that OVCA1 is a component of the diphthamide synthetic pathway will shed light for the further understanding of the function of OVCA1, molecular mechanisms underlying the tumorigenesis in the defect of OVCA1, and the physiological role of diphthamide. Furthermore, a functional genetic approach utilizing the random gene trap mutants library of CHO cells described above should become a useful strategy to identify the genes responsible for specific phenotypes.
The nucleotide sequence(s) reported in this paper has been submitted to the DDBJ/GenBankTM/EBI Data Bank with accession number(s) AB194396 [GenBank] .
* This work was supported by Grants-in-Aid for Scientific Research (A) 15659074 and (B) 12204091 from the Ministry of Education, Culture, Sports, Science and Technology of Japan and a grant from the ONO Medical Research Foundation. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
1 The abbreviations used are: EF-2, elongation factor 2; DT, diphtheria toxin; ETA, Pseudomonas exotoxin A; CHO, Chinese hamster ovary; MTT, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide; RACE, rapid amplification of cDNA ends; RT, reverse transcription.
We thank Dr. Philippe Soriano for kindly providing the plasmid construct, pROSA geo, and Dr. Masahiko Nishiyama for critical comments on the MTT assay.
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