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J. Biol. Chem., Vol. 280, Issue 12, 11043-11051, March 25, 2005
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From the
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark,
NatImmune A/S, Fruebjergvej 3, Box 3, DK-2100 Copenhagen, Denmark, and ¶Laboratory of Developmental Immunology, GRJ1402, MassGeneral Hospital for Children, Harvard Medical School, Boston, Massachusetts 02114
Received for publication, November 4, 2004 , and in revised form, January 14, 2005.
| ABSTRACT |
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| INTRODUCTION |
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The overall polypeptide structure of MBL is similar to that of the other collectins (surfactant protein A, surfactant protein D, conglutinin, CL-43, liver collectin 1, and CL-46). It includes a short, cysteine-rich N-terminal stretch (aa 121), a collagen-like region (aa 2281) with one interruption (aa 4344) that causes the collagen-like structure to bend, a neck region (aa 82115), and a carbohydrate recognition domain (aa 116228) (9). This domain confers the carbohydrate specificity of MBL and is stabilized by two disulfide bonds (1). Due to the collagen-like domain, MBL forms homotrimers, designated the MBL subunit. The collagen-like structure is stabilized by the presence of hydroxyprolines and glycosylated hydroxylysines (10). The subunit structures assemble from the C to the N terminus. The neck region initiates the folding (11), and the collagen-like region zips toward the N terminus, creating trimeric subunits. The structure is finally stabilized by intrasubunit disulfide bonds in the N-terminal region (12). The oligomer structure of MBL is similar to the structure of C1q, the primary component of the classical pathway of complement (13), where the bouquet-like forms arise from the formation of intersubunit disulfide bonds in the N-terminal region (14). However, whereas C1q is made up of three different polypeptide chains, MBL consists of homotrimers. In addition, C1q only exists as hexamers, whereas MBL exists as anything from dimers to octamers. The disulfide-bonding pattern of C1q thus cannot be expected to be identical to that of MBL.
The elucidation of the structure of MBL is complicated by the fact that the polypeptide chain of MBL is very heterogeneous. In addition to several post-translational modifications, there are three well documented mutations in the collagen-like region (1517). These mutations all lead to amino acid substitutions, which distort the collagen-like region and inhibit the correct formation of the oligomer forms of MBL. In addition to the heterogeneity of the polypeptide chain, promoter polymorphisms (18) result in highly variable amounts of MBL in the blood.
The objective of the present work was to map the disulfide-bonding pattern of the N-terminal part of MBL. The work was performed using recombinant protein due to the availability of larger amounts and the fact that the recombinant protein would be more homogenous than MBL purified from a pool of plasma.
| EXPERIMENTAL PROCEDURES |
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-Cyano-4-hydroxycinnamic acid was from Aldrich (recrystallized in boiling acetonitrile). Porcine trypsin was a gift from Novo Nordisk A/S. 38% NuPAGE gradient gels and 45-nm polyvinylidene difluoride membranes were from Novex. Primary anti-human MBL antibody HYB131-01 was purchased from The Antibody Shop (The State Serum Institute), and polyclonal horseradish peroxidase anti-mouse antibody was from DAKO. The SuperSignal West Pico substrate was from Pierce. The XCell Surelock & blot M Mini Cell 0 + Blot Module for Western blots was purchased from Novex. Fujifilm FPM-100A was from Eastman Kodak Co. All water was obtained from a Milli-Q system (Millipore Corp.), and all chemicals were of analytical grade unless otherwise stated. ProteinsrhMBL was produced by NatImmune A/S using a human embryonic kidney cell line HEK293, principally as described elsewhere (19). rhMBL was captured from the cell debris-deprived cell culture broth using a Glucosamine-Sepharose 4FF column (custom-designed resin from Amersham Biosciences) and subsequently eluted with TBS containing EDTA. The retained product was concentrated on a Source 30Q column and desalted on a Sephacryl S-400 HR column (both column materials from Amersham Biosciences). The full process also included steps to remove DNA by nuclease treatment (Benzonase; Merck) and removal of virus (Planova filters; Asahi Kasei Corp.).
Western BlotThe protein samples were separated using 38% SDS-PAGE from Novex. 20 ng of protein was loaded per lane, and electrophoresis was for 2 h at 125 V. The gel was blotted onto a prewetted 45-nm polyvinylidene difluoride membrane using the XCell II blot module and a blotting time of 135 min at 25 V. The membrane was blocked for 30 min in a Tris buffer (10 mM Tris, 150 mM NaCl, pH 8.0) supplemented with 0.1% Tween 20, and the primary antibody was applied and incubated for 312 h with gentle shaking. The membrane was washed and incubated with the second antibody for 90 min with gentle shaking. The protein bands were finally visualized using the SuperSignal West substrate (Pierce) and Fujifilms.
Electron MicroscopyPurified MBL was diluted and adsorbed to glow-discharged, carbon-coated copper grids at room temperature. Grids were then washed with two drops of deionized water and stained with two drops of freshly prepared 0.75% uranyl formate (Pfaltz & Bauer, Waterbury, CT). Specimens were inspected with a Philips Tecnai 12 electron microscope operated at 120 kV. Images were taken at a nominal magnification of 52,000 Å using low dose procedures.
Coating of Magnetic BeadsThe MPG® Long Chain Alkylamine beads (CPG Inc.) were coated with 50 µg of porcine trypsin as previously described (20).
Proteolytic DigestionsLyophilized rhMBL was reconstituted in 8 M urea and diluted to 1 M in 50 mM NH4HCO3 containing 5% chymotrypsin (1-chloro-3-tosylamido-7-amino-2-heptanone-treated; Worthington). The digestion mixture was incubated for 4 h at 37 °C, and the enzyme activity was quenched by freezing until separation by reversed phase HPLC. Lyophilized N-terminal of rhMBL was reconstituted in 8 M urea and diluted to 1 M in 50 mM NH4HCO3 containing 50 µl of trypsin-coated magnetic beads. To a control sample in the same buffer was added 5 µl of 55 mM iodoacetamide (IAA), and the mixture was incubated for 10 min in the dark prior to the addition of trypsin-coated beads. The digestions were incubated for 24 h at 37 °C with shaking and quenched by removal of the magnetic beads and freezing until separation by reversed phase HPLC. Some lyophilized fractions of N-terminal rhMBL peptides were reconstituted in 5 µl of 10 mM NH4HCO3 and 1 µl of subtilisin (1 pmol/µl of 10 mM NH4HCO3; Calbiochem). The digestions were incubated for 2 h at room temperature and quenched by micropurification and elution onto MALDI target.
Reversed Phase HPLCAll proteolytic digestions were separated using the
kta LC-900 system controlled by Unicorn software (version 3.21.02; Amersham Biosciences). All separations were performed on a Jupiter 5µ C18 250 x 4.60-mm column (Phenomenex), using a 1%/min gradient from 550% B solvent followed by a 3%/min gradient from 5080% B solvent. The A solvent used was 0.06% trifluoroacetic acid in water, and the B solvent was 90% acetonitrile, 0.05% trifluoroacetic acid in water. The subdigestions of the N-terminal part of rhMBL were separated using a Jupiter 5µ C18 250 x 2.00-mm column (Phenomenex). Fractions were analyzed by MALDI MS or MALDI Q-TOF MS.
Reduction of DisulfidesLyophilized samples were reconstituted in 10 mM DTT, incubated at 56 °C for 10 min, and analyzed by MALDI MS or MALDI Q-TOF MS.
N-terminal SequencingN-terminal sequencing of peptides was performed on a Hewlett Packard G1005A protein sequencing system run according to the manufacturer's recommendations. Approximately 100 pmol of sample was applied to the sequencer.
MALDI MS of rhMBL PeptidesMALDI MS analysis of peptides was performed on a Voyager-DETM STR controlled by the Data Explorer software (version 3.4.0.0
[EC]
; both from PerSeptive Biosystems). The instrument was run with an acceleration voltage of 20 kV, grid voltage 65%, and delay time 100 ns. 100300 shots were accumulated per spectrum. Approximately 1 pmol of sample was loaded in
-cyano-4-hydroxycinnamic acid (20 µg/µl in 70% acetonitrile, 0.1% trifluoroacetic acid) using the dried droplet method.
MALDI Q-TOF MSMALDI Q-TOF MS of peptides was performed on a Q-Tof UltimaTM MALDI controlled by MassLynx software (version 3.5; both from Micromass Ltd.). Approximately 10 pmol of sample was concentrated on a reversed phase microcolumn (POROS® 50 R2; Perseptive Biosystems) packed in a GelLoader tip (Eppendorf) as previously described (21). The sample was eluted onto the target with a 10 µg/µl solution of
-cyano-4-hydroxycinnamic acid in 70% acetonitrile, 0.1% trifluoroacetic acid.
Data AnalysisAll data obtained on the Voyager-DETM STR was processed using the m/z software (version 2001.08.14; Proteometrics Inc.). External calibration of all spectra was performed using tryptic peptides of lactoglobulin (MH+ values of 837.48 and 2313.27). All MALDI Q-TOF data were processed using the MassLynx software (version 3.5; Micromass Ltd.). Peptides and modifications were identified using the GPMAW software (version 5.03; Lighthouse Data) and the sequence of human MBL (Swiss-Prot number P11226 [GenBank] ), without the 20-aa signal peptide.
Plasmid Construction and Site-directed MutagenesisHuman cDNA encoding wild-type MBL has previously been cloned (19). The cDNA encoding MBL was recloned into the pcDNA3.1 vector (Invitrogen). Briefly, the cDNA coding for MBL is placed under the control of the cytomegalovirus promoter-enhancer.
To create the mutant variants of MBL, we mutated Cys5, Cys12, and Cys18 to Ser using a PCR-based method. We modified the QuikChange multisite-directed mutagenesis (Stratagene, La Jolla, CA) method to create all possible combinations of mutants. The mutagenesis reactions were carried out as described elsewhere.2 After mutagenesis, the relevant parts of the plasmid were sequenced to verify that the correct mutations were generated.
Transient Transfection of HEK-293 CellsTransient transfection of the mutated MBL constructs into human embryonic kidney HEK293-F cells was performed using the FreeStyleTM 293 Expression System (Invitrogen). For transfection, 2 µg of each of the plasmids, complexed to the transfection reagent 293fect, was added to 5 x 106 cells in T-25 flasks with FreeStyleTM 293 Expression Medium (Invitrogen) supplemented with ascorbic acid. The transfected cells were incubated at 37 °C with a humid atmosphere of 8% CO2. After 7 days, the supernatants were harvested and analyzed by Western blot.
| RESULTS |
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32 kDa (Fig. 2B).
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25% (v/v) acetonitrile (2730 min in Fig. 3) contained Glu1Leu46 of rhMBL. The mass spectrum inserted in Fig. 3 shows the reduced N-terminal peptide with an m/z value of 5316. The four peak clusters at m/z 5154, 4992, 4830, and 4668 correspond to the loss of 14 monosaccharide units respectively, originating from the glycosylated residues Lys36 and Lys39, probably due to in-source fragmentation. The heterogeneity of each peak cluster arises from the variation in hydroxylation of residues Pro21 and Pro27. The identity of the peptides was further confirmed using Edman degradation.
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Several fractions contained two interlinked peptides Thr11Lys29 (Fig. 4). Again this is the result of the heterogeneity in the hydroxylation of Pro21 and Pro27. As illustrated by Fig. 5C, the peak at m/z 3697 disappears upon reduction, yielding a peak at m/z 1849 corresponding to peptide Thr11-Lys29. This does not lead directly to the identification of disulfide bonds, since peptide Thr11-Lys29 contains two cysteines as illustrated by the inset in Fig. 5C. In order to identify the involved disulfide bonds, the fraction was subdigested with subtilisin, since Wallis and Drickamer (22) have previously shown that subtilisin can cut the Ala15Cys16 bond in rat rMBL-C. Fig. 6 illustrates the original sample (top panel), the nonreduced subtilisin-digested sample (middle panel), and the corresponding reduced sample (lower panel). The subtilisin digestion gives rise to two peaks (m/z 1345 and 2390), which disappear upon reduction. These two peaks correspond to two interlinked Thr11Ala17 peptides and two interlinked Cys18Lys29 peptides, cleavage taking place at the Ala17Cys18 bond. This identifies the presence of Cys12Cys12 and Cys18Cys18 bonds in rhMBL, as illustrated by the two building blocks inserted in the top of Fig. 6. Upon reduction, the peak at m/z 1196 (Cys18Lys29) gets more intense, whereas the peak of Thr11Ala17 (m/z 672) is below the cut-off m/z. This parameter is set to avoid suppression of the peptide signals, due to intense matrix signals in the low mass range.
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Oligomerization of the Cys to Ser Mutants of rhMBLThe preliminary binding model proposed, based on the MALDI MS results shown so far, was challenged by the production of Cys to Ser mutants of the N-terminal cysteines responsible for this binding. A series of PCR setups led to the production of all of the possible Cys to Ser mutants (i.e. the three single mutants, the three double mutants, and the triple mutant). A Western blot of their oligomerization patterns is illustrated in Fig. 8. The C5S and C12S single mutants form mainly polypeptide dimers and subunit monomers. C5S also forms a small amount of different oligomers. The C18S single mutant and all of the double mutants form polypeptide monomer but mainly polypeptide dimers. The triple mutant only exists as polypeptide monomers, as expected.
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| DISCUSSION |
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The MBL subunit consists of three interlinked polypeptide chains (the subunit monomer) that further assemble into oligomeric forms. The collagen-like region, in combination with the
-helical coiled-coil neck region, is responsible for the association of the polypeptide chains into the subunit monomer (10, 11). The subunit monomer is further stabilized by intrasubunit disulfide bonds in the N-terminal region (12). Intersubunit disulfide bonds in the N-terminal region have been shown to be responsible for the association of the monomer subunits into oligomeric forms (14). The function of MBL in the immune system is tightly linked to the level of oligomerization. The resulting small oligomer structures are believed to be responsible for opsonizing pathogens, whereas the larger forms activate complement (68).
Several species, including mice and rats, produce two types of MBL, one type containing two N-terminal cysteines, which does not oligomerize, and one type containing three N-terminal cysteines, which forms higher oligomers like the human MBL species does (22, 25, 26). The N-terminal disulfide-bonding pattern of the rat MBL containing two cysteines (MBL-C) was solved by Wallis and Drickamer (22). This model involves asymmetrical bonds, indicating a large flexibility of the polypeptide chains in the subunit. This pattern is identical to that determined for CL-43 (27). The N-terminal disulfide binding pattern has not previously been elucidated for any of the MBLs containing three cysteines, apart from the observation that the first of the three N-terminal cysteines seems to be responsible for the oligomerization, whereas the two other cysteines form intrasubunit bonds (25, 26).
Due to the large heterogeneity of the MBL polypeptide chain, a crucial aspect of the identification of the disulfide-bonding pattern was the isolation of the "intact" N-terminal region. Collagenase has been used to isolate intact and functional CRDs of MBL (28); however, we have been unable to isolate the N-terminal region using this approach. Most other specific enzymes (trypsin, endoproteinase Lys-C, and Asp-N) cleave between the first two cysteines, yielding smaller peptides, and except for a tryptic dimer of the first Cys residue, no cross-linked peptides from the N-terminal region were ever recovered. Only digestion with chymotrypsin resulted in recovery of the various intact forms of the cross-linked N-terminal region (Fig. 3). Neither MALDI MS nor SDS-PAGE yielded any information about the number of interacting polypeptides. This is most likely due to the high heterogeneity of the samples, which is clearly seen in the HPLC chromatogram. Subdigestion of the chymotryptic peptides with trypsin and subtilisin resulted in the identification of several specific disulfide bonds. The cleavages abolished information on inter-versus intrasubunit disulfide bonds, but the peptides identified gave rise to a set of building blocks that form the oligomer structures of rhMBL (Figs. 5, 6, 7).
The Cys to Ser mutants and their disulfide bonding patterns (Fig. 8) offer support to the results obtained by MALDI MS and show that the building blocks represent both intra- and intersubunit disulfide bonds. The lack of one, two, or three cysteines simplifies the interpretation of the very complex bonding pattern in question. The single mutants indicate the role of each of the three cysteines in the complex oligomerization process of rhMBL. The C5S is the only mutant that oligomerizes, whereas C12S forms subunit monomers and C18S only forms polypeptide dimers. The double mutants offer support for the existence of the Cys5Cys5, Cys12Cys12, and Cys18Cys18 bonds identified by MALDI MS. The triple mutant stresses the importance of the N-terminal cysteines in the folding of active rhMBL, since this mutant only exists as polypeptide monomers.
The results reported here can be used to explain the assembly of the different MBL oligomer structures. From the building blocks (Figs. 5, 6, 7) and the bonding patterns of the Cys to Ser mutants (Fig. 8), a scheme for the assembly of the ultrastructures of rhMBL is proposed (Fig. 9). The scheme leads to the formation of one of three subunit structures, which decide the further "fate" of this particular rhMBL. The model indicates that the preferred binding pattern is symmetrical and repetitive but leaves room for the termination of the oligomerization at any point and is thus able to account for all of the different oligomer forms of MBL.
The dynamics of the proposed oligomer assembly are similar to the ones previously described by Weis and colleagues (1). We speculate that as the collagen-like region zips from the C terminus (11) and the N-terminal cysteines come into contact, the first Cys18Cys18 bond forms. Afterward, the Cys12Cys12 bond forms, preferably involving the third polypeptide, after which a Cys5Cys5 bond is formed. This leaves three "free" cysteines to interact with neighboring subunits.
There are two isomers of this continuous subunit, varying only in the polypeptides participating in the Cys5Cys5 bond (Fig. 9). Either of the two isomers satisfies the building blocks illustrated in Figs. 5A and 6. However, since they are at the peptide level, these building blocks yield no information of the number of intact polypeptides involved. This information comes from the Cys to Ser single mutants. Both isomers allow C5S to form subunit monomer and leave the potential to oligomerize, which this mutant does. Isomer 1 allows C12S to form polypeptide dimer, whereas isomer 2 allows it to form subunit monomer. It also leaves the potential to oligomerize, but since this is not the case (Fig. 8), the binding pattern identified in CL-43 and rat MBL-C is likely to be applicable here. For C18S, isomer 2 accounts for the formation of polypeptide dimers, whereas isomer 1 indicates that it should be able to form subunit monomers. The absence of this structure in Fig. 8 may be due to C18 playing an important role in the initiation of the correct bonding.
A terminating subunit (Fig. 9) may occasionally form if the Cys12Cys12 bond forms between the two polypeptides linked by the Cys18Cys18 bond. This leads to the third polypeptide end flipping down along the side of the structure forming the Cys5Cys18, thereby terminating the oligomerization process. The Cys5Cys12 bond of this terminating subunit arises as the folding of one chain makes Cys12 available for binding to the Cys5 of a neighboring polypeptide. This terminating subunit satisfies the building block in Fig. 5B and also accounts for the polypeptide dimer formation seen in the C5S mutant in Fig. 8. Based on the absorption of the different building blocks in Fig. 4 and the low amounts in gels (Fig. 2). we speculate that this termination pattern does not happen very often. Alternatively, termination of oligomerization can presumably happen by circularization of a number of continuous subunits. Considering all of the possible different oligomer forms, this process is proposed to be somewhat random in time but may be dependent on the concentration during synthesis. Sometimes polypeptide monomers or dimers (disulfide-linked), not wound in a collagen coil, could join the disulfide bonding and account for intermediate oligomers. These intermediate forms are not as common as the full subunit forms (Fig. 2). Likewise, it is not known whether both isomer 1 and isomer 2 are present in the final MBL structure.
Fig. 7 shows the identification of the free cysteine. Although the presence of a free cysteine in an uneven oligomer is a prerequisite, previous structural studies failed to locate free cysteines (26, 29). One explanation is the small amount of potential free cysteine compared with the total amount of cystine. The free cysteines would account for less than 1% of the total Cys residue content, since in the proposed model, 1 of 105 Cys residues in a pentamer is expected not to participate in MBL bonding. In a mixture with even numbered oligomers, this ratio is expected to be even lower. Another explanation could be that the free cysteine in vivo is likely to be modified by free cysteine or glutathione. The two continuous subunits in the model in Fig. 9 each have three "free" cysteines. At least two cysteines are likely to be participating in the oligomerization with neighboring subunits. In oligomers with an even number of subunits, all three cysteines most likely participate in disulfide bonding. However, in the case of an uneven numbered oligomer, one cysteine will be unable to participate, and both isomers allow for Cys12 to be free in accordance with the building block in Fig. 7. An explanation for why only Cys12 appears to end up as a free cysteine must await the purification of pure oligomeric forms.
The ultrastructure of MBL is often compared with C1q, the first component of the classical pathway of complement. The two molecules are similar both in function and structure, but they also have their differences. C1q is composed of six heterotrimers, linked two and two by disulfide bonds in the N-terminal region. A nonreducing SDS-PAGE of C1q shows only two bands, corresponding to the A-B polypeptide dimer and the C-C polypeptide dimer (30). A nonreducing SDS-PAGE of MBL shows a large number of different oligomer forms, indicating that the MBL polypeptides and subunits are covalently interlinked (26, 31, 32), in contrast to the collagen-like structure and noncovalent interactions holding together the C1q hexamer. This is supported by the fact that the Cys to Ser triple mutant only exists as single polypeptide chain and abolishes the possibility of superimposing the N-terminal bonding pattern of C1q upon MBL.
MBL is structurally closely related to the other collectins. At the polypeptide level, all of the collectins have a similar domain organization. All of the collectins form homotrimers, but their oligomer structures divide them into several classes. CL-43 (33) and MBL-C (22) exist only as monomers, whereas surfactant protein D (34) and conglutinin (35) associate into cruciformed tetramers. Surfactant protein A (36) forms a hexamer bouquet-like structure similar to C1q and MBL. Not much is known about the ultrastructure of the two most recently discovered collectins: liver collectin 1 (37) and CL-46 (38). It is believed that the N-terminal cysteines and their bonding patterns are responsible for the variation in the oligomer structures of the collectins. Indeed, CL-43 and the nonoligomerizing form of rat MBL (MBL-C) show identical bonding patterns (22, 27). The bonding patterns for the other collectins have not been solved. The known pattern cannot be directly superimposed on human MBL, since this protein and the rat oligomer form (MBL-A) are the only collectins containing three N-terminal cysteines. The C5S and C12S single mutants show an oligomer distribution that could indicate a binding pattern similar to that described for CL-43 and rat MBL-C. The fact that the C5S mutant behaves in the same way as the C12S mutant is in contrast to previous studies stating that the first cysteine is responsible for intersubunit bonds, whereas the next two form intrasubunit bonds (25, 26). The fact that the C18S does not form the subunit monomer could indicate either that there is steric hindrance preventing the formation of the expected Cys5Cys12 bond or that isomer 2 of the continuous subunit is more common (Fig. 9). This study shows that the number as well as the position of cysteines determines the oligomerization pattern of rhMBL.
The three well characterized mutations in the collagen-like region of human MBL (MBL-B, -C, and -D) are known to decrease or completely abolish the complement-activating activity of the protein (7, 8, 39, 40). The mechanism for this is believed to be altered or impaired oligomerization, and determination of the N-terminal disulfide-bonding pattern of these variants could answer this question. Indeed, MBL-D is characterized by the introduction of an extra cysteine in the collagen-like domain. This extra cysteine results in an even number and thereby abolishes the need for oligomerization in order to form a stable molecule.
| FOOTNOTES |
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|| To whom correspondence should be addressed: Dept. of Biochemistry and Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark. Tel.: 45-65502371; Fax: 45-65502467; E-mail: php{at}bmb.sdu.dk.
1 The abbreviations used are: MBL, mannan-binding lectin; rMBL, recombinant MBL; rhMBL, recombinant human MBL; pMBL, plasma-derived MBL; aa, amino acid; MALDI, matrix-assisted laser desorption/ionization; MS, mass spectrometry; CL-43 and -46, collectin 43 and 46, respectively; IAA, iodoacetamide; Q-TOF, quadropole time-of-flight; DTT, dithiothreitol; HPLC, high pressure liquid chromatography. ![]()
2 P. H. Jensen and D. Weilguny, manuscript in preparation. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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