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J. Biol. Chem., Vol. 280, Issue 18, 18245-18252, May 6, 2005
Crystal Structure of the N-terminal Domain of the Group B Streptococcus Alpha C Protein*![]() ¶ ||![]() ![]() ![]() ![]()
From the
Received for publication, November 2, 2004 , and in revised form, February 25, 2005.
Group B Streptococcus (GBS) is the leading cause of bacterial pneumonia, sepsis, and meningitis among neonates and an important cause of morbidity among pregnant women and immunocompromised adults. Invasive diseases due to GBS are attributed to the ability of the pathogen to translocate across human epithelial surfaces. The alpha C protein (ACP) has been identified as an invasin that plays a role in internalization and translocation of GBS across epithelial cells. The soluble N-terminal domain of ACP (NtACP) blocks the internalization of GBS. We determined the 1.86-Å resolution crystal structure of NtACP comprising residues Ser52 through Leu225 of the full-length ACP. NtACP has two domains, an N-terminal -sandwich and a C-terminal three-helix bundle. Structural and topological alignments reveal that the -sandwich shares structural elements with the type III fibronectin fold (FnIII), but includes structural elaborations that make it unique. We have identified a potential integrin-binding motif consisting of Lys-Thr-Asp146, Arg110, and Asp118. A similar arrangement of charged residues has been described in other invasins. ACP shows a heparin binding activity that requires NtACP. We propose a possible heparin-binding site, including one surface of the three-helix bundle, and nearby portions of the sandwich and repeat domains. We have validated this prediction using assays of the heparin binding and cell-adhesion properties of engineered fragments of ACP. This is the first crystal structure of a member of the highly conserved Gram-positive surface alpha-like protein family, and it will enable the internalization mechanism of GBS to be dissected at the atomic level.
Group B Streptococcus (GBS)1 (Streptococcus agalactiae) remains the leading cause of invasive bacterial diseases in neonates, despite its decline in prevalence during the last decade because of intrapartum chemoprophylatic therapy (1, 2). It is also an important cause of morbidity in pregnant women and non-pregnant adults with underlying medical conditions (3-5). GBS colonizes the human gastrointestinal and genitourinary tracts and may cause chorioamnionitis and urinary tract infection in pregnant women and a range of invasive infections in elderly and immunocompromised adults (1, 6-8). During labor and delivery, GBS may be transmitted to neonates, causing pneumonia, sepsis, or meningitis. Four to six percent of all neonatal GBS infections result in death (6, 9). In vitro, GBS adheres to (10, 11), internalizes within (12-14), and translocates across (15) intact human epithelial and endothelial cells. Little is known about the bacterial components that allow this pathogen to adhere to and penetrate cellular membranes. Previous studies suggest that surface proteins are significantly involved in the process (11, 16). The surface-expressed GBS alpha C protein (ACP) has been shown to act as an invasin (15). ACP is the prototype of a family of surface-expressed proteins containing long tandem repeats (alpha-like proteins (Alp)). Members of this family of proteins have a high degree of sequence homology with each other and are thought to share similar function. Indeed, the Alp expressed in group A Streptococcus, R28, has been associated with cell adhesion (17) and that of Enterococcus faecalis, Esp, has been associated with virulence (18). Deletion of the ACP gene bca attenuates the virulence of GBS 5-7-fold and the internalization of GBS into cervical epithelial cells by 80% (19). Furthermore, the amount of internalized GBS within human cervical epithelial cells in vitro is inhibited by 75% in the presence of the N-terminal domain of ACP (NtACP) (15), suggesting that ACP is a major determinant of virulence. Recently, ACP has been reported to bind glycosaminoglycans (GAG) (20). ACP consists of an N-terminal domain (174 amino acids), a variable number of tandem repeats of 82 amino acids each, and a 45-amino acid C-terminal domain containing a LPXTG peptidoglycan-binding motif. NtACP mediates GBS internalization within human epithelial cells (15). NtACP in association with a repeat domain is necessary to bind GAG (20). Moreover, both the alpha C protein and the isolated N-terminal domain are immunogenic and elicit antibodies that protect against GBS infections in experimental animals (21, 22).
To provide further clues concerning the role of NtACP in adherence, entry, virulence, and immunity, we have determined its three-dimensional structure at 1.86 Å resolution by x-ray crystallography. The mostly negative surface of NtACP includes a regular linear arrangement of positive charges that strongly suggested the location of the heparin-binding site and provided preliminary indications regarding their detailed intermolecular interaction. To confirm these structurally based predictions and define the limits of the binding site more precisely, we have conducted in vitro and in vivo binding assays using engineered fragments of ACP. This is the first crystal structure of a member of the highly conserved Gram-positive surface alpha-like protein family, and it will enable the internalization mechanism of GBS to be further dissected at the atomic level.
All amino acid residues in this paper and in the coordinates file are numbered according to the alpha C protein numbering (23). Thus, the first methionine of the recombinant proteins is numbered Met39, as the first residue of the alpha C protein2 N-terminal domain in the GenBank data base is Ser52.
Cloning and Site-directed Mutagenesis of NtACPCloning of the DNA encoding for the N-terminal domain of alpha C protein (pDEK14) has been described previously (22). Two leucine residues were substituted with methionine residues (L88M and L94M) using the Quik-Change site-directed mutagenesis kit (Stratagene) according to the manufacturer's instructions. Forward primer 5'-GATTTATATGATGTAAAAATGGGTAAAATAGATCCAATGCAATTAATTGTTTTAG-3', reverse primer 5'-CTAAAACAATTAATTGCATTGGATCTATTTTACCCATTTTTACATCATATAAATC-3', and pDEK14 template were used. The resulting construct, pGB1, was cloned into Escherichia coli BL21(DE3) for expression of the mutant form of NtACP. Based on the structure of NtACP, the DNA encoding for D2-R was produced using PCR forward primer 5'-CACCTTGAGGGATAAGATT-3' and reverse primer 5'-TCATAGTTTATTTCCTTTACC-3' to amplify a 504-base-pair portion of ACP including approximately one-third of the NtACP (i.e. Leu164-Leu225, most of domain 2), an adjacent repeat, and 13 amino acid residues of the C-terminal region from plasmid pT7LM39 (24). The forward primer includes a CACC sequence, and the reverse primer includes a TCA stop codon added as directed for use with the pET200 Directional TOPO Expression Kit (Invitrogen). The PCR product was cloned into the pET200/D-TOPO vector using the manufacturer's instructions, and the resulting construct was transformed into E. coli BL21(DE3).
Sample PreparationThe native and mutant recombinant NtACP were expressed in E. coli BL21(DE3) (Novagen) with a His6 tag fused at their C-terminal end and purified as previously described (15). Selenomethionyl (SeMet) proteins were expressed overnight in E. coli BL21(DE3) at 25 °C following a protocol previously described for the use of non-auxotrophic cells (25). SeMet mutant proteins were purified in the presence of 0.05% E. coli BLR (Novagen) was used to express full-length 9-repeat ACP, as well as the 9-repeat region (9RR, without N- or C-terminal regions). Full-length 9-repeat ACP, 9RR, and D2-R were expressed and purified as described previously (15, 24). CrystallizationCrystals were grown by hanging drop vapor diffusion method at 21 °C using a 2-µl drop. Native and SeMet mutant proteins (18 mg/ml) were mixed separately with an equal volume of the well solution containing 100 mM sodium acetate, pH 4.6-5.1, and 10-15% (w/v) polyethylene glycol 4000 (well solution for SeMet proteins included 10 mM dithiothreitol). The resulting elongated crystals (typical dimensions 0.6 x 0.3 x 0.3 mm for the native and 2.0-3.0 x 0.2 x 0.2 mm for the SeMet derivative) grow in space group P6122 with unit cell dimensions of a = b = 56.5 and c = 271.6 Å for the native and a = b = 56.7 and c = 272.2 Å for the SeMet derivative (see Table I). These crystals had 1 NtACP molecule/asymmetric unit (Vm = 2.88 Å3/Da) and a solvent content of 57%. In advance of cryocooling the crystals, the native crystals were quickly soaked in 100 mM sodium acetate, 10% (w/v) polyethylene glycol 4000, and 25% glycerol, whereas the SeMet crystals were cryoprotected by bringing the mother liquor to a final concentration of 20% glycerol in small steps (3% increments every 30 min), and were frozen in liquid nitrogen.
Data CollectionData for the native crystals were collected using a 1.01-Å radiation on a nine-element CCD detector at beamline 19ID at the Advanced Photon Source (APS), Argonne National Laboratory. A multiwavelength anomalous dispersion data set of the SeMet mutant crystal was collected at beamline X26C at the National Synchrotron Light Source, Brookhaven National Laboratory, at three different x-ray energies around the K absorption edge of selenium and recorded on an ADSC Quantum 4 CCD detector (Table I). Structure Determination and RefinementThe present structure determination depended solely on the anomalous scattering from two selenium atoms (for 180 residues). The crystal structure of SeMet NtACP was determined by the single anomalous dispersion method, using its peak wavelength data set (Table I). The data were integrated and reduced using DENZO and SCALEPACK (26). Atomic positions for two selenium atoms (SeMet88 and SeMet94) were located by SOLVE (27), and the phases were calculated. A solvent-flattened map (RESOLVE) at 2.60 Å resolution was of high quality (see Fig. 1A). Clearly defined solvent boundaries were present, and most of the side chain densities were visible. Model building was performed using XtalView (28), and the atomic model was refined using REFMAC5 (29), with experimental phases included as restraints and with intermittent model rebuilding. The resulting model for residues 60-231 with most side chains present gave an R factor and Rfree of 26.9 and 30.9%, respectively, versus the SeMet data (Table I). A rigid body fit of the SeMet model to the native data were performed by molecular replacement using EPMR (30) at 4 Å resolution. Further refinement of the atomic model and phase extension to 1.86 Å resolution were done with REFMAC5 and additional model rebuilding was performed with XtalView. Solvent molecules (water, dithiothreitol, and glycerol) were built based on expected hydrogen bond geometry and electron density. The final R factor and Rfree of the NtACP (Fig. 1B) were 19.3 and 23.3%, respectively, at 1.86 Å nominal resolution (Table I). Analysis using PROCHECK (31) shows 97.1% of non-proline and non-glycine residues in the most favored region and 2.85% in the additionally allowed region of the Ramachandran plot. However, one residue (Asn76) could not be built into the electron density envelope in a single low energy conformation, suggesting that multiple conformations of the main chain may be present. Dot Blot AssayProtein binding to heparin was studied with a modified dot blot technique (20) modeled after an immunoblot assay. Proteins (1 µg of each) were applied to a nitrocellulose membrane followed by blocking for 1 h with 5% skim milk. The membrane was then incubated with heparin-albumin-biotin (Sigma) at 0.05 mg/ml for 1 h, followed by alkaline phosphatase-conjugated avidin (Pierce) for 1 h prior to washing and developing. Flow CytometryFluorescent labeling of proteins was performed using the AlexaFluor 488 Protein Labeling Kit (A-10235; Molecular Probes), to conjugate AlexaFluor 488 dye to protein samples, according to manufacturer's instructions as described previously (15). ME180 human cervical epithelial cells (ATCC) were grown to monolayer confluence in 6-well plates with 2 ml of RPMI 1640 (Invitrogen), including 10% fetal calf serum (Invitrogen) and 1% penicillin/streptomycin (Invitrogen). The day prior to the assay, the medium was replaced with 1 ml of fresh medium, and the cells were incubated overnight at 37 °C with 5% CO2. The next day, AlexaFluor-labeled protein was added to the wells to a final concentration of 0.1 µM. The plates were incubated at 37 °C with 5% CO2 for 1.5 h. The medium was removed from the wells, and the monolayers were washed three times with 1 ml of PBS to remove unbound proteins. 350 µl of trypsin-EDTA (0.25% trypsin, 1 mM EDTA-4Na, Invitrogen) was added to the wells, and plates were incubated for 10 min at 37 °C. Cells were detached by repeated pipetting and harvested by centrifugation at 650 rpm (50 x g) for 8 min. Cells were washed with 1 ml of PBS and resuspended in 0.1 ml of 2% paraformaldehyde in PBS before incubation at 4 °C overnight. The samples were washed with 1 ml of PBS to remove the fixative, resuspended in 0.4 ml of PBS, filtered through a cell-strainer cap (Falcon), and analyzed by flow cytometry on the MoFLo (Cytomation) machine. The cell population of interest was identified by using the AlexaFluor-labeled bovine serum albumin sample to define nonspecific staining and/or autofluorescence levels. Positive cells were defined to have a fluorescent signal greater than that of 98.5% of the bovine serum albumin-treated control cell population.
Overall StructureThe crystal structure of the NtACP, residues 52-225, has been determined to 1.86 Å resolution by single anomalous dispersion (Table I and Fig. 2). The final model has acceptable geometry, with an R factor and Rfree of 19.3 and 23.3%, respectively (Table I). The molecule is elongated with overall dimensions of 82 x 34 x 27 Å. It is composed of two major domains, the membrane-distal domain 1 (D1) is comprised of Ser57-Asp160, and domain 2 (D2) includes Ser161-Leu225. Domain 1 contains eight -strands arranged into three -sheets: a large flat sheet containing strands F-E-G-I and two smaller sheets, A-D and B-C (Fig. 2). These sheets enclose a hydrophobic core that is highly conserved among the Alp family members (Fig. 3). The F-E-G-I and the A-D sheets are arranged to form a typical -sandwich, but the basic pattern is elaborated in a distinctive way by the addition of an -helix (H1, 6 residues) and two 310-helices (H2, 4 residues, and H3, 5 residues). Domain 2 is composed of three antiparallel -helices (H4, H5, and H6) arranged in a 35-Å long left-handed three-helix bundle, a very common structural motif that delimits a highly conserved hydrophobic core (Figs. 2 and 3). The three -helices are composed of 16 amino acids (Ser161-Asn176), 22 amino acids (Thr181-Asn202), and 17 amino acids (Thr205-Lys221), respectively. An additional, though biologically irrelevant, -helix (H7, 9 residues), corresponding to the linker from the pET24a vector connecting the protein to the His6 tag, immediately follows domain 2.
Structural AlignmentData base searches were carried out to establish how domain 1 of NtACP might be related to other proteins of known sequence and structure. Except for the Alps, homology searches at the nucleotide and amino acid levels did not identify any other proteins with meaningful similarities to NtACP. The structure comparison program DALI (32) found no protein that aligned well with domain 1 in its entirety. However, several protein structures align with a root mean square deviation of <3.0 Å with a subset of the C comprising 70% of the NtACP domain 1, which includes the F, E, G, and I strands of the large -sheet and the A and D strands of the smaller sheet of the -sandwich. The most significant structural homologues include several proteins known to be involved in cell adhesion, including MADCAM-1 (PDB code 1bqs
[PDB]
(33)), type III fibronectin domain of tenascin (PDB code 1qr4
[PDB]
(34)), and module 10 of type III human fibronectin (FnIII10; PDB code 1fnf
[PDB]
(35)). The closest structural similarity is seen when the large -sheet F-E-G-I of NtACP is aligned with the corresponding -sheet C'-C-F-G of FnIII10 (root mean square deviation of 1.1 Å on C s (Fig. 4A)).
The relationship between the two proteins is made clearer by protein folding topology diagrams of FnIII10 and NtACP domain 1 (Fig. 4B), which were calculated using the TOPS algorithm (36). The diagrams confirm the topological and structural correspondence between the large
Despite the significant structural differences between NtACP and FnIII10, NtACP contains a large highly exposed loop between the G and I strands of the large sheet that is topologically and structurally related to the integrin-binding loop of FnIII10. In FnIII10, this loop contains a canonical Arg-Gly-Asp (RGD) integrin-binding motif, in which the Arg and Asp side chains are highly exposed. In NtACP, the structurally analogous residues are Lys144-Thr145-Asp146 (KTD). The Lys144 and Asp146 side chains are exposed and are highly conserved in the Alp family. Although this sequence has not been previously described as an integrin-binding sequence, variations on the RGD motifs have been described for other integrin-binding proteins, raising the possibility that integrins may serve as ligands for NtACP-mediated cell adhesion.
Distribution of Surface ChargesThe NtACP surface is dominated by acidic residues, except for two small positively charged clusters (Fig. 5). The distribution of positive charges may be important for understanding the structural basis of the ability of ACP to bind heparin (20). One basic cluster (BR1) is located in domain 1. It includes three basic residues from the vicinity of the E-F loop, Arg110, Lys114, and Lys106, and two amide side chains, Gln121 and Asn133. The positively charged atoms typically lie 8-9 Å apart and only two of them, Arg110 and Lys114, show charge conservation among Alp family members (Figs. 3 and 5A). The second, much larger, cluster (BR2) includes basic residues Lys72 and Lys90 from domain 1, and Arg165, Lys196, Arg172, Arg185, and the amide side chain of Asn176 in domain 2. These residues are aligned down the cleft between -helices H4 and H5 and exposed to the solvent, forming a well defined positively charged band of 35 Å in length (Fig. 5B). Residues included in BR2 are on average 6 Å apart, and most of them are conserved (Lys72, Arg165, Lys196, and Arg185) or conserved by charge (Lys90) within the Alp family (Fig. 3). Heparin Binding Activity of ACPPrior work has shown binding of full-length 1-repeat and 9-repeat ACP to ME180 cells in culture and to heparin in a dot blot assay (20). It was reported that the NtACP and the 9RR, taken separately, bind only minimally in these assays and that both the NtACP and the repeat-region domains are required for the GAG binding activity of ACP (20). The NtACP crystal structure shows a cluster of positively charged residues (BR2) in the three-helix bundle that is predicted to lie near the junction of NtACP with the first of the ACP repeats. To test whether the BR2 region contributes to the GAG binding activity of full-length ACP, we expressed and purified D2-R, comprised of the three-helix bundle of the NtACP (starting at Leu164), one 82-amino acid repeat, and 13 amino acids in the C-terminal region. It thus includes most of the charged residues in BR2, excluding only Lys72 and Lys90, due to their location distant from D2 in the linear sequence of NtACP. D2-R was tested for heparin binding activity by dot blot analysis as described in Ref. 20. It showed a level of activity similar to that of full-length 9-repeat ACP (Fig. 6). In contrast, neither NtACP nor the 9RR region alone bound to heparin appreciably.
D2-R was also evaluated for its interaction with ME180 human cervical epithelial cells in flow cytometry assays performed as described previously (20). We found that D2-R associates with 91.6% of these cells, which is comparable with the binding activity of full-length ACP. Furthermore, this binding was inhibited in a concentration-dependent way in the presence of soluble heparin, as was previously seen for ACP (20). In marked contrast, fewer than 5% of the cells bound either the NtACP or 9RR construct alone (20).
Adhesion to human epithelial and endothelial cells is a critical step for GBS colonization and invasion. ACP binds to human epithelial cells and plays a role in the internalization and translocation of GBS across epithelial cells (15). Similarly, group A Streptococcus Alp protein R28, identical to GBS Alp3, binds human epithelial cells (17, 37). ACP expressed by GBS strain A909 contains a 56-amino-acid residue signal sequence at the N terminus, highly conserved among Alps. It is followed by a 174-residue N-terminal domain (Ser52-Leu225), nine 82-residue tandem repeats, and a 45-residue C-terminal domain containing a LPXTG peptidoglycan-binding motif. Immunogenic and protective epitopes have been mapped to both the NtACP and repeat regions (22). The number of tandem repeats in ACP expressed by other GBS strains varies from 1 to 16, affecting the antigenicity and presumably the protein structure (38). NtACP competitively inhibits binding of ACP to and internalization of GBS within the human cervical epithelial cell line ME180 (15), suggesting that the N-terminal region of ACP is involved in binding to one or more receptors on the surface of these cells and that binding facilitates the internalization of GBS. The N-terminal regions of Alps share 60-100% similarity at the amino acid level (Fig. 3), suggesting that they may function similarly (17, 23, 37, 39).
We have solved the three-dimensional structure of NtACP of GBS strain A909 by x-ray crystallography at high resolution to further understand the role(s) that the N-terminal region of Alps may play during streptococcal infection. NtACP is composed of a membrane-distal
Potential Integrin-binding SiteA number of proteins involved in cell adhesion or which serve as cell surface receptors share a common folding pattern. A close structural homology between NtACP -sandwich (domain 1) and FnIII10 (35) was identified (Fig. 4), wherein each secondary structural element identified as analogous in a topological alignment was also structurally similar. The integrin binding activity of FnIII10 requires the presence of an Arg1493-Gly1494-Asp1495 (RGD) sequence motif (40, 41) on an exposed F-G loop of the structure (35). Although NtACP lacks such an RGD sequence, there is an exposed Lys144-Thr145-Asp146 (KTD) motif at the top end of domain 1. The KTD motif of NtACP is part of the G-I loop that structural and topological alignment procedures have identified as analogous to the loop containing the RGD motif of FnIII10 (35, 40). Although integrins generally bind RGD sequences, several proteins have been shown to bind a number of related motifs, such as KTS (42, 43), MLD (44), or MGD(W) (45) of disintegrins obtustatin, EC3, and EMF-10, respectively. Similarly, COL15, the largest collagenous domain of type XVII collagen, binds to the 5 1 and V 1 integrins through a KGD motif (46). The sequence alignment of the N-terminal domains of the members of the Alp family shows that Lys144 and Asp146 are conserved in all members, and although Thr145 is not conserved, other members display uncharged residues with small side chains (Fig. 3). The conserved residues surrounding the RGD loop of FnIII10 are acidic, as are those surrounding the KTD loop of NtACP.
In addition to the RGD motif of FnIII10, FnIII also requires module 9 for optimal integrin-binding affinity (47). Two charged residues in module 9 (FnIII9) have been shown to be critical for binding to We have found that the structure of NtACP has a very similar arrangement of exposed aspartate and arginine residues (Fig. 7C), wherein the proposed KTD sequence of NtACP and the known RGD sequence of FnIII10 occupy analogous positions, and NtACP residues Arg110 and Asp118 are each positioned within 30 Å of the KTD motif and are structurally analogous to Arg1379, and Asp1373 of FnIII9-10. We hypothesize that NtACP and Y. pseudotuberculosis invasin may mimic the integrin binding activity of FnIII in similar ways. Further analysis will be necessary to determine which of the integrins or other molecules of the extracellular matrix are bound by NtACP.
Potential Heparin/Heparan Sulfate-binding SiteSeveral bacterial pathogens express adhesins that bind heparin (57-59). Heparin, an anticoagulant GAG, is composed of repeating disaccharide units of D-glucosamine and uronic acid linked by
Pure preparations of homogeneously sulfated heparin have well determined structures forming helical ribbons with an Two factors argue that the basic residues of BR2, rather than BR1, are the most likely to be responsible for the NtACP contribution to heparin binding activity. First, heparin binding requires at least one of the ACP repeats to be present (20). The crystal structure shows that some of the charged residues in BR2 (but none of the residues in BR1) belong to domain 2 and are located quite close to the carboxyl end of NtACP, where the first of the repeats is attached in the full-length ACP. It is easy to imagine a spatially contiguous binding site that includes residues from both domains of NtACP and residues from one or more of the repeat domains as well. A second important factor is that minor changes in the conformations of flexible Lys and Arg side chains could easily reduce the average 6-Å spacing between positive charges that was seen in the crystal structure to the 5-Å spacing required for optimal complementarity. Flexibility in basic side chains of the protein may well favor GAG binding by compensating for heterogeneity in the sequence, conformation, or a sulfation pattern of the ligand. The heparin binding activity of D2-R, which includes the majority of the residues of BR2, supports our hypothesis that the BR2 region of NtACP contributes to the heparin binding activity of the protein. Furthermore, fluorescently labeled D2-R binds to epithelial cells, and this binding is inhibited by soluble heparin. These data, in conjunction with the absence of heparin binding activity in the isolated NtACP or repeat-region constructs alone, suggest that a GAG binding domain involves a junctional epitope including residues in the BR2 domain as well as residues in the adjacent repeat region. The relevance of heparin binding to the process of cell entry by GBS is strongly suggested by the correlation between results in the dot blot and cell binding assays. Specifically, both samples that showed similarly high levels of binding activity in the dot blot assay also showed high levels in binding epithelial cells. Conversely, both ACP fragments showing negligible levels of binding did so in both assays. The binding of ACP to cells, and subsequent steps in cell entry, could involve one or more families of receptor molecules bound simultaneously, alternatively, or in sequence. Possible binding sites for integrin and GAG have been identified, and it is interesting to note that the proposed binding sites for the two ligands lie on opposite faces of the protein. Knowledge of the high-resolution structure of the distal end of ACP provides a framework for mutational studies to identify cellular receptors and their binding sites on the ACP surface. Structural determination of the repeat regions would clearly contribute to further characterize the heparin binding domain of ACP.
The atomic coordinates and structure factors (code 1YWM) have been deposited in the Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Rutgers University, New Brunswick, NJ (http://www.rcsb.org/).
* This research was supported by Public Health Services Grant AI38424 (to L. C. M.) and the William Randolph Hearst Fund (to G. R. B.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
¶ Current address: Dept. of Biological Sciences, Columbia University, 703 Fairchild Center, M.C. 2452, 1212 Amsterdam Ave., New York, NY 10027.
1 The abbreviations used are: GBS, group B Streptococcus; ACP, alpha C protein; NtACP, N-terminal domain of ACP; Alp, alpha-like protein; GAG, glycosaminoglycan; SeMet, selenomethionine(yl); 9RR, 9-repeat region; BR, binding region; FnIII, type III fibronectin; PBS, phosphate-buffered saline.
2 The nucleotide sequence for the alpha C protein gene has been deposited in the GenBank data base under accession number M97256
[GenBank]
(23). The amino acid sequence of this protein can be accessed through NCBI Protein Database under NCBI accession number AAA26848
[GenBank]
(23).
We thank the staff of APS beamline 19ID (S. Ginell) and the staff of NSLS beamline X26C (S. Myers) for their tremendous help during data collection. We acknowledge the staff of NSLS beamline X12C (R. Sweet and A. Saxena), and the staff of Bio-CARS (R. Henning) for assistance in developing the crystallization and freezing protocols and during attempts to find isomorphous derivatives. We thank the members of the Hogle laboratory (especially L. Guogas, B. Appleton, and V. Weiss) and members of the Ellenberger laboratory (especially E. Toth and B. Eichman) at the Harvard Medical School for their help and discussion during this work. We thank Meghan Gilmore for assistance in preparing D2-R and Hope Hamrick for assistance with flow cytometry assays.
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