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J. Biol. Chem., Vol. 280, Issue 20, 19682-19688, May 20, 2005
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**
From the
Division of Translational Research, Kyoto Medical Center, National Hospital Organization, 1-1 Mukaihata-cho, Fukakusa, Fushimi-ku, Kyoto 612-8555, the Departments of
Cardiovascular Medicine and ||Pediatrics, Graduate School of Medicine, Kyoto University, 54 Kawara-cho, Shogoin, Sakyo-ku, Kyoto 606-8507, and the ¶Department of Bioscience, National Cardiovascular Center Research Institute, 5-7-1 Fujishirodai, Suita, Osaka 565-8565, Japan
Received for publication, November 3, 2004 , and in revised form, February 9, 2005.
| ABSTRACT |
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-myosin heavy chain during the differentiation. These findings demonstrate that acetylation of GATA-4 as well as of histones is involved in the differentiation of ES cells into cardiac myocytes. | INTRODUCTION |
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Histone acetyltransferases (HATs) and histone deacetylases (HDACs) regulate gene expression patterns by affecting chromatin structure. These regulators are recruited to target genes in association with specific DNA binding transcription factors. HATs facilitate chromatin opening by acetylating the N-terminal tails of nucleosomal histones, which are rich in lysine residues, thus promoting active transcription (3). Conversely, HDACs deacetylate lysine residues and induce compaction of chromatin, making the access of transcription factors to nearby promoters more difficult and thereby resulting in gene silencing (4). A transcriptional coactivator, p300, serves as one of the intrinsic HATs and plays central roles in a wide range of cellular processes, including proliferation, apoptosis, and differentiation (3, 5). In addition, p300 is able to acetylate several DNA binding transcription factors and enhance their DNA binding activities (3). For example, p300 acetylates p53, increases its DNA binding activity, and activates the transcription of p53-inducible genes, contributing to cell cycle arrest or apoptosis (6, 7). In cardiac myocytes, p300 acetylates GATA-4, enhances its DNA binding, and plays an important role in the transactivation of hypertrophy-responsive genes (8). However, the roles of HATs and HDACs in post-translational modification of GATA-4 during the differentiation of ES cells into cardiac myocytes remain unknown. Specifically, we would like to know whether the acetylation of GATA-4 occurs in ES cells during their differentiation into cardiac myocytes and, if so, whether pharmacological augmentation of the acetylation could facilitate the differentiation. The present study was performed to address these questions.
| MATERIALS AND METHODS |
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Western Blotting, Immunoprecipitation, and Analysis of the Acetylation State of GATA-4 Nuclear protein extracts from ES cells were prepared as previously described (8). Immunoprecipitation and Western blotting for p300, GATA-4, and
-actin were performed as previously described (8). Briefly, aliquots of the lysates containing 100 µg of protein were immunoprecipitated by incubating with goat anti-GATA-4 polyclonal antibody (Santa Cruz Biotechnology) or normal goat IgG in low stringency buffer for 16 h at 4 °C and then incubating with protein G beads (Amersham Biosciences) for 2 h at 4 °C. The precipitate was washed four times in the same buffer and subjected to Western blotting by using rabbit polyclonal antibody against acetylated lysine (Cell Signaling) or rabbit anti-GATA-4 polyclonal antibody (Santa Cruz Biotechnology). The detection of acetylated GATA-4 was also analyzed by pulse labeling as previously described (8). Briefly, EBs were resuspended in 2.5 ml of medium containing 0.05 mCi of [1-14C]acetic acid sodium salt/ml (200 µCi/ml; Amersham Biosciences) and incubated for 3 h. Ethanol, the solvent of [1-14C]acetic acid sodium salt, was removed by evaporation to minimize the cytotoxic effect of the ethanol in the culture medium. Nuclear extracts from these cells were immunoprecipitated using goat anti-GATA-4 antibody (Santa Cruz Biotechnology) or normal goat IgG in low stringency buffer for 16 h at 4 °C and incubated with protein G beads for 1 h at 4 °C. The precipitate was washed four times in the same buffer, resuspended in 50 µl of sodium dodecyl sulfate (SDS) lysis buffer, heated to 95 °C for 2 min, electrophoresed in an SDS-polyacrylamide gel, fixed, and autoradiographed using a bioimaging analyzer (BAS 2000; FUJIX).
Electrophoretic Mobility Shift Assays (EMSAs)EMSAs were carried out as previously described (8). The sequence of the sense strands of the double-stranded oligonucleotides containing a GATA-4 site in the endothelin-1 promoter were as follows: Wt-GATA, 5'-CCTCTAGAGCCGGGTCTTATCTCCGGCTGCACGTTGC-3', and Mut-GATA, 5'-CCTCTAGAGCCGGGTCTGCACTCCGGCTGCACGTTGC-3' (mutated sequence is underlined). We also used a double-stranded oligonucleotide that contained the Sp-1 binding site as a control probe (purchased from Santa Cruz Biotechnology, Inc.).
Acid Extraction of Proteins from ES Cells and Detection of Histone AcetylationHistones were isolated by acid extraction using a commercial kit (Upstate) according to the manufacturer's recommendations. In brief, cells were washed with phosphate-buffered saline, resuspended in lysis buffer with 0.2 mol/liter hydrochloric acid, and incubated on ice for 30 min. After centrifugation at 11000 x g for 10 min, the supernatant fraction was dialyzed against 0.1 mol/liter acetic acid twice and against H2O three times. After dialysis, the protein concentrations of extracts were measured, and equal aliquots of extracts were subjected to 18% SDS-PAGE. Western blotting for acetylated histone-3/4 and for total histone-3/4 was performed using goat anti-acetylated histone-3/4 polyclonal antibodies (Santa Cruz Biotechnology) and rabbit anti-histone-3/4 polyclonal antibodies (Santa Cruz Biotechnology), respectively.
Chromatin Immunoprecipitation Assay and Real-time PCR AnalysisChromatin immunoprecipitation assays were performed as previously described (10) with the following modifications. In brief, after fixation of the genomic DNA and nuclear proteins with formalin, extracts were sonicated, subsequently immunoprecipitated with goat polyclonal anti-acetylated histone-4 antibody (Santa Cruz Biotechnology), goat polyclonal anti-GATA-4 antibody (Santa Cruz Biotechnology), or control goat IgG, and immunocomplexes were captured by adding protein G beads. After the precipitates were washed four times in the low stringency buffer, DNA was purified by phenol-chloroform extraction, and precipitated with ethanol. To detect the atrial natriuretic factor (ANF) promoter, which contains two GATA-4 sites (-281/-273 and -123/-118), collected DNA was subjected to real-time quantitative PCR analysis using a thermal cycler (ABI Prism®7900HT sequence detection system) with the detection probe and specific primers for the ANF promoter (-292/-93). Sequences of the primers were as follows: FAM-AATGTGACTCTTGCAGCTGAGGGTCTGG-TAMRA (detection probe; Applied Biosystems), 5'-GAGCGCCCAGGAAGATAACC-3'(sense for the ANF promoter), and 5'-GCCAGGAGAAGATGCCCTTT-3'(antisense for the ANF promoter).
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-myosin heavy chain (MHC) as previously described (11). Briefly, after fixation the cells were incubated with anti-cardiac
-MHC monoclonal antibody (Novocastra Laboratories) at a dilution of 1:50, followed by incubation with anti-mouse horseradish peroxidase-conjugated secondary antibody (Jackson ImmunoResearch) at a dilution of 1:200. 30 µg of whole cell lysates extracted from EBs were subjected to Western blotting using anti-cardiac MHC monoclonal antibody that reacts with both
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-cardiac MHC. The levels of signals were quantified by densitometry using NIH image1.61. Flow CytometryFor the quantitative analysis of the number of GFP-positive cells in Nkx2.5-GFP ES cells, EBs were dissociated into single cells and analyzed by flow cytometry (BD Biosciences) as previously described (9).
Gene Expression Analysis by Real-time RT-PCRTotal RNA was isolated from EBs by using TRIzol® reagent (Invitrogen). RNA samples were treated with DNaseI (Invitrogen) to eliminate genomic DNA contamination, and cDNA was synthesized by using SuperScriptTMII reverse transcriptase (Invitrogen). For real-time PCR, the reaction was performed with a SYBR® Green PCR master mix (Applied Biosystems), and the products were analyzed with a thermal cycler (ABI Prism®7900HT sequence detection system). Levels of GAPDH transcript were used to normalize cDNA levels. Gene-specific primers were used as previously described (9).
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| RESULTS |
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-actin was almost constant. As p300 is able to acetylate GATA-4, we examined whether the acetylated form of GATA-4 also increased in a time-dependent manner during the ES cell differentiation. Protein extracts from EBs at days 3, 5, and 7 were subjected to immunoprecipitation with an anti-GATA-4 antibody, followed by Western blotting using anti-acetylated lysine antibody. As shown in Fig. 1B, upper panel, the acetylated form of GATA-4 progressively increased from day 3 to day 7, consistent with the expression pattern of p300. The anti-acetylated lysine antibody was stripped, and then the membrane was reprobed with the anti-GATA-4 antibody. GATA-4 was similarly immunoprecipitated with anti-GATA-4 antibody in these three groups (Fig. 1B, lower panel). No protein was immunoprecipitated with control IgG (lane four). GATA-4/DNA Binding Increases Concomitantly with GATA-4 Acetylation during ES Cell DifferentiationNext, to examine the changes in the DNA binding activity of GATA-4 during ES cell differentiation, EMSAs were performed. The same extracts from EBs used to detect acetylation were probed with a radiolabeled double-stranded oligonucleotide containing a GATA site. As shown in Fig. 1C, competition EMSAs demonstrated that the retarded band represented specific binding, as evidenced by the fact that it was competed out by an excess of unlabeled GATA oligonucleotide (lane 2) but not by the same amount of an oligonucleotide containing a GATA site with a mutation (lane 3). Furthermore, the retarded band was super-shifted by anti-GATA-4 antibody (lane 5) but not by control goat IgG (lane 4). These data confirm that the retarded band represents an interaction of the probe with GATA-4. The amount of GATA-4/DNA binding (Fig. 1D) was markedly increased from day 3 to day 7, whereas Sp-1/DNA binding (Fig. 1E) was not altered. This was consistent with the increase in the amounts of p300 and acetylated GATA-4.
An HDAC Inhibitor, TSA, Induces Acetylation of Histone Tails and Increases the Accessibility of GATA-4 to the ANF PromoterTo examine the effect of TSA, a specific HDAC inhibitor, on the differentiation of ES cells, we first determined whether TSA treatment induces the acetylation of histone tails in these cells. Seven days after the transfer of EBs onto Petri dishes, ES cells were stimulated with TSA for 24 h. Protein extracts from these cells were then subjected to immunoblotting for the acetylated states of histone-3 and histone-4. As shown in Fig. 2A, TSA treatment of ES cells enhanced the acetylation of both histone-3 and histone-4. GATA-4 binds two GATA elements (-281/-273 and -123/118) within the ANF promoter and activates this promoter in a sequence-specific manner (12). As GATA-4 is a substrate of an intrinsic HAT, p300, using chromatin immunoprecipitation assays we examined whether histones near GATA-4 sites within the ANF promoter are acetylated as a result of TSA treatment and, if so, whether the treatment increases the accessibility of GATA-4 to the ANF promoter. Before immunoprecipitation, input genomic DNA was measured using GAPDH primers (Applied Biosystems) by comparison with the standard curve shown in supplemental Fig. S1A, left panels. Extracts from non-treated and TSA-treated ES cells containing the same amounts of GAPDH were immunoprecipitated with anti-acetylated histone-4 antibody, anti-GATA-4 antibody, or with control goat IgG as a negative control. DNA was then purified from these precipitates and subjected to real-time PCR to quantify the amount of GATA-4 site-containing DNA sequences in the ANF promoter. We quantified the amounts of DNA by comparison with the standard curve shown in supplemental Fig. S1A, right panels. As shown in Fig. 2B, in extracts precipitated with anti-acetylated histone-4 antibody and those precipitated with anti-GATA-4 antibody, the amount of the ANF promoter containing two GATA-4 sites was much higher in TSA-treated ES cells than in non-treated ES cells. However, this promoter was not detectable in the extracts precipitated with IgG. These findings demonstrate that treatment of ES cells with TSA induces acetylation of histones near GATA-4 sites within the ANF promoter and increases the accessibility of GATA-4 to these sites.
TSA Induces Acetylation of GATA-4 and Enhances GATA-4/DNA Binding in ES CellsWe next examined whether TSA also induces acetylation of the DNA binding transcription factor GATA-4 in ES cells. On day 7, ES cells were stimulated with TSA for 24 h, pulse-labeled with [14C]acetic acid sodium salt, and subjected to immunoprecipitation with antiserum against GATA-4 or with control goat IgG as a negative control. As shown in Fig. 3A, upper panel, incorporation of sodium [14C]acetate into GATA-4 protein was increased by TSA treatment. TSA-induced acetylation of GATA-4 was also confirmed by immunoprecipitation with anti-GATA-4 antibody followed by Western blotting with anti-acetylated-lysine antibody (Fig. 3A, middle panel). After the anti-acetylated lysine antibody was stripped, the membrane was reprobed with the anti-GATA-4 antibody. GATA-4 was similarly immunoprecipitated with anti-GATA-4 antibody in non-treated and TSA-treated cell extracts (Fig. 3A, lower panels). No protein was immunoprecipitated with control IgG (lane 3). These results indicate that TSA augments the acetylation of GATA-4 in ES cells. As shown in Fig. 3B, the expression of p300 was also increased by TSA stimulation, whereas the levels of GATA-4 and
-actin expression were almost constant. In addition, we performed EMSAs using protein extracts from ES cells to determine whether TSA treatment increased the DNA binding of GATA-4. We confirmed by competition and supershift assays that the retarded band indicated by the arrow in Fig. 3C represents specific binding of the probe with GATA-4, similar with the findings shown in Fig. 1C. The GATA-4/DNA binding was increased by TSA treatment in ES cells (Fig. 3C), whereas Sp-1/DNA binding was not altered by TSA treatment (Fig. 3D).
TSA Promotes the Differentiation of ES Cells into Cardiac MyocytesFinally, to determine whether TSA promotes the differentiation of ES cells into cardiac myocytes, we utilized an ES cell line (Nkx2.5-GFP ES cells) that expresses GFP under the transcriptional control of the cardiac-specific Nkx2.5 promoter. The cardiac specificity of GFP-positive cells in this cell line was shown in a previous study (9). In agreement with a previous study, we confirmed by cell sorting and immunocytochemistry for
-MHC that more than 90% of GFP-positive cells were positive for
-MHC and that none of the GFP-negative cells was
-MHC-positive (data are not shown). EBs derived from Nkx2.5-GFP ES cells (day 7) were stimulated with TSA (10 ng/ml) for 24 h. As shown in Fig. 4A, TSA-stimulated EBs showed distinct fluorescence, whereas non-stimulated EBs showed only vague fluorescence. Then we dissociated EBs, cultured the cells on the fibronectin-coated slides for 24 h, and stained them with an antibody against cardiac
-MHC. As shown in Fig. 4B, cells with brown signals indicating the presence of
-MHC were observed predominantly in TSA-stimulated ES cells. For quantification, the cells dissociated from EBs were also subjected to flow cytometric analysis. In Fig. 4C, the X- and Y-axes in the dot blot represent GFP and propidium iodide (PI) signals, respectively. The percentage of GFP-positive ES cells was significantly (p <0.05) increased by TSA treatment. TSA did not affect the number of propidium iodide-positive cells, excluding the possibility of its nonspecific toxic effects on ES cells.
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| DISCUSSION |
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Several lines of evidence suggest that p300 is critical for the development of the embryonic heart. Expression of p300 is relatively abundant in the heart, begins to be detected as early as embryo day 7.5, and increases during the subsequent developmental stages (13, 14). Homozygous p300 knock-out mice die between 9 and 11.5 days of gestation, exhibiting defects in proper heart development (13). p300 acts as a transcriptional coactivator of GATA-4, one of the earliest markers of cardiac myocyte differentiation, and is required for cardiac-specific gene expression (12, 15). In addition, p300 is able to acetylate GATA-4 and enhance its DNA binding activity (8). Homozygous mice in which HAT mutant p300 is knocked in exhibit developmental defects similar to those in p300 knock-out mice (16). These findings demonstrate that the HAT activity of p300 is required for proper heart development. The present study demonstrated that the acetylated form of GATA-4 and GATA-4/DNA binding increases in concert with the expression level of p300 during the differentiation of ES cells into cardiac myocytes. These findings suggest that p300 is involved in increasing the acetylation and DNA binding of GATA-4 during myocardial cell differentiation, while the precise roles of p300 HAT activity should be clarified by further studies.
Acetylation of nuclear proteins is also regulated by HDACs, whose functions are opposed by HATs (4, 17). HDACs repress gene expression not only by affecting chromatin structure but also by directly acting on transcriptional activators, co-repressors, and DNA binding factors. HDACs directly interact with DNA binding transcription factors such as p53, MyoD, and myocyte enhancing factor 2, deacetylate these factors, and repress their transcriptional activity (1820). HDACs also perturb the interaction between HATs (p300/cAMP-response element-binding protein-binding protein) and their target transcription factors. Furthermore, HDACs are able to recruit other transcriptional co-repressors to the target genes (17, 21). In agreement with previous reports, the present study demonstrated that inhibition of HDACs by TSA induced acetylation of histone tails in ES cells (22, 23). These tails included GATA-4 site-containing DNA sequences within the ANF promoter. In addition, TSA enhanced the acetylation of GATA-4 during the differentiation of ES cells into cardiac myocytes. These findings suggest that post-translational GATA-4 modification as well as epigenetic modification are involved in the increase in GATA-4/DNA binding. The results also suggest the hypothesis that TSA treatment releases HDACs from GATA-4 and promotes interaction between p300 and GATA-4. However, TSA also increased the amount of p300 protein in ES cells. Further studies are needed to clarify the precise mechanisms by which TSA induces acetylation and DNA binding of GATA-4.
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We have shown here that acetylation of GATA-4 as well as of histones occurs during the differentiation of ES cells into cardiac myocytes and that further augmentation of the acetylation by TSA promotes the differentiation. It is unclear at present whether acetylation of GATA-4 in whole EBs represents acetylation of GATA-4 in cardiac myocytes or their precursors. In mouse embryogenesis, however, GATA-4 is expressed in cardiac tissue during formation and bending of the heart tube at day 8 postcoitum (28). In contrast, GATA-4 is expressed later in the gut epithelium and in primitive gonads (at around day 11.5 postcoitum) (29, 30). These findings suggest that GATA-4 expression is restricted to cardiac tissue during early stages of heart development. Therefore, acetylation of GATA-4 detected in the entire EBs might represent acetylation of cardiac GATA-4, which possibly contributes to the differentiation of ES cells into cardiac myocytes. These findings emphasize the important roles of nuclear acetylation in myocardial cell differentiation. Our findings might be applicable to the differentiation of endogenous stem cells into cardiac myocytes in vivo. At present, the differentiation efficiency is too low to be used for myocardial regeneration therapy for patients with end-stage heart failure. Therefore, it would be interesting to test the usefulness of TSA for this therapy in vivo.
| FOOTNOTES |
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The on-line version of this article (available at http://www.jbc.org) contains a supplemental figure. ![]()
** To whom correspondence should be addressed. Tel.: 81-75-641-9161; Fax: 81-75-641-9252; E-mail: koj{at}kuhp.kyoto-u.ac.jp.
1 The abbreviations used are: ES, embryonic stem; HAT, histone acetyltransferase; HDAC, histone deacetylase; TSA, trichostatin A; GFP, green fluorescent protein; EB, embryoid body; EMSA, electrophoretic mobility shift assay; ANF, atrial natriuretic factor; MHC, myosin heavy chain; GAPDH, glyceraldehyde-3-phosphate dehydrogenase; WT, wild type. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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