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J. Biol. Chem., Vol. 280, Issue 28, 26137-26142, July 15, 2005
5-Formyltetrahydrofolate Is an Inhibitory but Well Tolerated Metabolite in Arabidopsis Leaves*![]() ![]() ¶![]() **
From the
Received for publication, March 21, 2005 , and in revised form, May 5, 2005.
5-Formyltetrahydrofolate (5-CHO-THF) is formed via a second catalytic activity of serine hydroxymethyltransferase (SHMT) and strongly inhibits SHMT and other folate-dependent enzymes in vitro. The only enzyme known to metabolize 5-CHO-THF is 5-CHO-THF cycloligase (5-FCL), which catalyzes its conversion to 5,10-methenyltetrahydrofolate. Because 5-FCL is mitochondrial in plants and mitochondrial SHMT is central to photorespiration, we examined the impact of an insertional mutation in the Arabidopsis 5-FCL gene (At5g13050) under photorespiratory (30 and 370 µmol of CO2 mol1) and non-photorespiratory (3200 µmol of CO2 mol1) conditions. The mutation had only mild visible effects at 370 µmol of CO2 mol1, reducing growth rate by 20% and delaying flowering by 1 week. However, the mutation doubled leaf 5-CHO-THF level under all conditions and, under photorespiratory conditions, quadrupled the pool of 10-formyl-/5,10-methenyltetrahydrofolates (which could not be distinguished analytically). At 370 µmol of CO2 mol1, the mitochondrial 5-CHO-THF pool was 8-fold larger in the mutant and contained most of the 5-CHO-THF in the leaf. In contrast, the buildup of 10-formyl-/5,10-methenyltetrahydrofolates was extramitochondrial. In photorespiratory conditions, leaf glycine levels were up to 46-fold higher in the mutant than in the wild type. Furthermore, when leaves were supplied with 5-CHO-THF, glycine accumulated in both wild type and mutant. These data establish that 5-CHO-THF can inhibit SHMT in vivo and thereby influence glycine pool size. However, the near-normal growth of the mutant shows that even exceptionally high 5-CHO-THF levels do not much affect fluxes through SHMT or any other folate-dependent reaction, i.e. that 5-CHO-THF is well tolerated in plants.
5-Formyltetrahydrofolate (5-CHO-THF)1 is formed from 5,10-methenyltetrahydrofolate (5,10-CH=THF) by a hydrolytic reaction catalyzed by serine hydroxymethyltransferase (SHMT) in the presence of glycine (1, 2). Spontaneous chemical hydrolysis of 5,10-CH=THF may be a minor additional source (3). 5-CHO-THF is the most stable natural folate and the most enigmatic, for it is the only one that does not serve as a cofactor in one-carbon metabolism. Instead, 5-CHO-THF is a potent inhibitor of SHMT and most other folate-dependent enzymes in vitro (4, 5). 5-CHO-THF probably acts as a stable storage form of folate in seeds and fungal spores (57), but it is not clear what role, if any, it plays in metabolically active tissues (8). This question is particularly pertinent for leaves. Leaf mitochondria have very high levels of SHMT and, during photorespiration, receive a massive influx of glycine (which leads to a matching SHMT-mediated glycine serine flux) (9). Conditions in leaf mitochondria therefore favor 5-CHO-THF formation (Fig. 1). Indeed, 5-CHO-THF can comprise 50% of the folate pool in leaf mitochondria (10, 11), which is far more than in mammalian mitochondria (1214). Furthermore, 5-CHO-THF is reported to make up 1440% of the folate pool in leaves and other metabolically active plant organs (10, 15), a much higher proportion than the 310% typical of mammals and yeast (2, 16).
5-Formyltetrahydrofolate cycloligase, EC 6.3.3.2 [EC] (5-FCL, also known as 5,10-methenyltetrahydrofolate synthetase), is the only enzyme known to recycle 5-CHO-THF to a metabolically active form, which it achieves by catalyzing irreversible, ATP-dependent conversion to 5,10-CH=THF (2, 5). This enzyme is also something of an enigma. For one thing, despite the inhibitory effects of its substrate, 5-FCL is not essential in yeast: 5-FCL disruptants had 4-fold more 5-CHO-THF but no other new phenotype (2). For another, phylogenomic profiling (17, 18) indicates that some bacteria lack 5-FCL even though they have SHMT. Lastly, 5-FCL overexpression in human cells lowered the folate level and raised folate turnover rate, suggesting that 5-FCL may have a second function as a folate-degrading enzyme (19). Another intriguing feature of 5-FCL is that its subcellular location differs among eukaryotes. Whereas the enzyme is largely if not solely cytosolic in yeast and mammals (2, 16, 20, 21), it is exclusively mitochondrial in plants (4). Taken with the key role of mitochondrial SHMT in photorespiration, with the inhibition of SHMT by 5-CHO-THF, and with the presence of 5-CHO-THF in leaf mitochondria, the location of plant 5-FCL implies (i) that this enzyme governs mitochondrial 5-CHO-THF levels and (ii) that, via its effect on 5-CHO-THF levels, 5-FCL could regulate the in vivo activities of SHMT and other folate-linked mitochondrial enzymes (Fig. 1).
To investigate such regulatory functions for 5-FCL and 5-CHO-THF, we identified and characterized an Arabidopsis 5-FCL insertional mutant. This mutant had greatly elevated mitochondrial 5-CHO-THF levels and hyperaccumulated glycine under photorespiratory conditions. However, the mutant grew almost normally in ambient air, indicating that folate-dependent metabolic reactions in plants are substantially tolerant to 5-CHO-THF.
Chemical and ReagentsFolates were from Schircks Laboratories (Jona, Switzerland). 10-Formyldihydrofolate was prepared from (6R,6S)-5-CHO-THF as described (22). [ -32P]dCTP (3000 Ci mmol1) was from PerkinElmer Life Sciences.
Plants and Growth ConditionsArabidopsis thaliana plants were grown at 2228 °C in 12-h days (photosynthetic photon flux density 80 µE m2 s1) in potting soil irrigated with water. Material was lyophilized to determine dry weight. In experiments at various CO2 levels, plants were grown for 4 weeks in ambient air ( Arabidopsis MutantA 5-FCL mutant (28D07) was identified in the Syngenta T-DNA insertion collection (ecotype Columbia) (23). Segregants, wild type or homozygous for the mutation, were identified by PCR using gene-specific primers located 5' or 3' of the T-DNA insertion (5'-CTGAAGTGAGTGGCAACTACA-3' and 5'-GTCTCACTTCTTCTCTTACCTT-3', respectively) and the T-DNA-specific primer 5'-GCATCTGAATTTCATAACCAATC-3'. DNA was extracted by the "Shorty" protocol available on the website of the University of Wisconsin Biotechnology Center. The insertion site was confirmed by sequencing.
Gel Blot AnalysesTotal RNA was extracted from 0.1-g samples of rosette leaves using RNeasy kits (Qiagen, Valencia, CA) and treated with DNase (DNA-freeTM kit, Ambion, Austin, TX). RNA samples were separated by formaldehyde-1.5% agarose gel (25 µg/lane) and blotted to Protran® nitrocellulose membrane (Schleicher and Schuell, Keene, NH), hybridized for 4 h at 65 °C in 6x SSC, 0.5% SDS, 5x Denhardt's solution, and 100 µgml1 sonicated salmon sperm DNA, and washed in 0.1x SSC, 0.5% SDS at 65 °C. The 5-FCL probe was a 373-bp NdeI-XhoI fragment of pET28b-At5FCL (4) corresponding to the 3'-half of the 5-FCL open reading frame (Fig. 2A). The rRNA probe was a 0.9-kb SmaI fragment of a Zamia pumila clone (24). Genomic DNA was isolated as described (25) from 2 g of leaves pooled from 20 plants, digested, separated by 0.8% agarose gel (5 µg/lane), and blotted to Protran® membrane. Blots were hybridized as above and washed in 0.1x SSC, 0.5% SDS at 37 °C. The probe was a 436-bp fragment of the bar gene amplified using the primers 5'-CATCGTCAACCACTACATCG-3' (forward) and 5'-GAAGTCCAGCTGCCAGAAAC-3' (reverse). Probes were labeled with [
Folate AnalysisFolates were extracted from leaf tissue (0.5 g) by Polytron homogenization in 10 ml of 50 mM Na-HEPES, 50 mM CHES, adjusted to pH 7.9 with HCl, containing 2% (w/v) sodium ascorbate, and 10 mM
Amino Acid AnalysisLeaf tissue (
Isolation of Mitochondria and SHMT AssaysMitochondria were prepared from 1530 g of leaves from 4-week-old Arabidopsis plants as described (29), with the following modifications. The pellet containing chloroplasts and mitochondria was suspended in 2 ml of a solution containing 20 mM TES-NaOH, pH 7.2, 0.25 M sucrose, 1 mM EDTA, 2 mM MgCl2, 0.1% bovine serum albumin, 14 mM
5-CHO-THF FeedingThree wild type and three mutant plants (5 weeks old) were washed free of soil, and their root systems were severed under water, leaving
Identification and Characterization of an Arabidopsis 5-FCL MutantA potential 5-FCL mutant was identified in the Torrey Mesa Research Institute T-DNA mutant collection (23) via the sequence flanking the insert. Resequencing of this region confirmed the presence of an insert close to the 3' end of the sixth intron, which is located within the protein-coding part of the gene (Fig. 2A). Plants homozygous for the mutation and their wild type siblings were identified by PCR and subjected to Southern analysis using a T-DNA sequence (a fragment of the bar gene) as probe (Fig. 2B). Only the mutant plants gave hybridizing bands, establishing that the T-DNA is inserted only at the 5-FCL locus. The multiple banding pattern in Fig. 2B indicates that several concatenated T-DNA copies are present at this locus. Northern analysis of leaf RNA showed no detectable 5-FCL transcript in the mutant (Fig. 2C), indicating a knock-out mutation. The homozygous mutants and their wild type siblings were therefore propagated for further work. When grown in soil at ambient levels of CO2 ( 370 µmol of CO2 mol1), visible differences between mutant plants and their wild type siblings were modest. The growth rate of mutant plants was 20% lower (Fig. 2D), and they showed a flowering delay of about 1 week (Fig. 2E). There was no difference in leaf color or form (Fig. 2E).
Folate Metabolic Profiling and Its InterpretationFolates were treated with conjugase to convert them to monoglutamyl form, purified by affinity chromatography (26), and then separated by HPLC with electrochemical detection (27), which was chosen for its selectivity and sensitivity. These procedures do not distinguish between 10-CHO-THF and 5,10-CH=THF, which are interconverted during sample processing and finally both measured as 5,10-CH=THF (27). (Efforts were made to preserve 5,10-CH=THF by extraction in maleate buffer (30) and to estimate it as an increase in 5-CH3-THF following NaBH4 reduction (31), but this maneuver gave poor results with plant samples.) Other HPLC-based procedures likewise fail to distinguish 10-CHO-THF from 5,10-CH=THF, measuring both as 10-CHO-THF (30). It is thus currently not feasible to determine the individual amounts of 10-CHO-THF and 5,10-CH=THF present in vivo, but only their sum (henceforth termed 10-CHO-/5,10-CH=THF). Similarly, it should be noted that 5,10-methylene-THF (5,10-CH2-THF) dissociates completely to THF during processing so that THF measurements are the sum of THF and 5,10-CH2-THF (henceforth termed THF/5,10-CH2-THF).
Folates in Leaves Exposed to Various CO2 Concentrations Plants grown for 4 weeks in ambient air were transferred for 5 days to air containing 30 or 3200 µmol of CO2 mol1 or kept in ambient air. The lower CO2 concentration, which is beneath the CO2 compensation point, stimulates photorespiration (and hence the glycine
Mitochondrial FolatesBecause mitochondria in photorespiring leaves are expected to be the main site of 5-CHO-THF formation and the only site of its removal by 5-FCL (Fig. 1), we investigated the impact of the 5-FCL mutation on mitochondrial folate levels of plants grown in ambient air. Four separate mitochondrial preparations were made from wild type or mutant plants (Fig. 4). Despite some variability among the preparations, mitochondria from the mutant clearly showed massive 5-CHO-THF accumulation relative to wild type (on average 8-fold, significant at p < 0.01) and a 120% increase in total folate. The mitochondrial 5-CHO-THF content rose from a mean value of 15% of total mitochondrial folate in the wild type to a mean of 72% in the mutant. The mitochondrial contents of 5-CH3-THF and 10-CHO-/5,10-CH=THF did not change significantly in the mutant, nor did that of 10-formyldihydrofolate (which forms readily from 10-CHO-THF in isolated mitochondria, Ref. 33). It is noteworthy that no THF/5,10-CH2-THF was detected in any of the mutant mitochondrial preparations. As THF and 5,10-CH2-THF are the folates needed for glycine
SHMT Activity in MitochondriaThe intramitochondrial 5-CHO-THF buildup in mutant plants, coupled with their fairly normal growth, led us to measure mitochondrial SHMT activities to check for a possible compensatory increase in the mutant. No such increase was found; SHMT activities in extracts of wild type and mutant mitochondria were 340 ± 32 and 336 ± 41 nmol min1 mg1 of protein, respectively (means ± S.E., n = 3). Free Amino Acids in Leaves Exposed to Various CO2 ConcentrationsTo establish whether the mitochondrial accumulation of 5-CHO-THF inhibits SHMT in vivo, we compared the glycine and serine contents of the leaves of wild type and mutant plants exposed for 5 days to 30, 370, or 3200 µmol of CO2 mol1 (Fig. 5). As CO2 concentration declined, wild type leaves showed small increases in glycine whereas mutant leaves showed much larger ones, so that the glycine content of mutant leaves was 19-fold higher than the wild type at 370 µmol of CO2 mol1 and 46-fold higher at 30 µmol mol1. There was also a small accumulation of serine in the mutant relative to the wild type (1.4-fold at 370 µmol of CO2 mol1, 1.8-fold at 30 µmol mol1, both significant at p < 0.01).
Besides serine, amino acids such as glutamate and alanine can act as amino donors in the formation of glycine from glyoxylate in the photorespiratory pathway (34). The levels of glutamate, alanine, and also aspartate were substantially reduced in the mutant compared with wild type at 30 µmol of CO2 mol1 (Table I) but not at the other CO2 concentrations (not shown).
Effect of Supplied 5-CHO-THF on Glycine and Serine ContentBecause exogenous 5-CHO-THF is taken up by Arabidopsis and enters mitochondria (35), we examined the effect of feeding 5-CHO-THF via the transpiration stream to illuminated wild type and mutant plants. Leaf glycine and serine levels were measured after 24 h of continuous light (Fig. 6). Consistent with in vivo inhibition of SHMT, 5-CHO-THF feeding raised glycine levels in wild type and mutant plants significantly (p < 0.05). The increase in glycine was larger in the mutant (9.4 versus 2.5 µmol g1 dry weight).
Our data demonstrate that 5-CHO-THF can inhibit the activity of mitochondrial SHMT in vivo and thus provide support for the view that 5-CHO-THF regulates one-carbon metabolism (5). Despite its important implications, there is rather little evidence for or against this view, and it remains controversial (8). However the most striking aspect of our findings is that 5-FCL ablation and the ensuing 5-CHO-THF buildup in mitochondria had so little impact on plant performance. A priori, this impact seemed likely to be devastating, above all to photorespiring leaves (4). We therefore conclude that plants are surprisingly tolerant of 5-CHO-THF, as presaged by earlier reports of remarkably high levels of this folate in leaf mitochondria (10, 11). Several mechanisms could contribute to this tolerance.
The first may be the ability of an expanded glycine pool to offset inhibition of SHMT by 5-CHO-THF. Assuming a matrix volume/protein ratio of 12 µl mg1 (36), the concentration of 5-CHO-THF in leaf mitochondria can be estimated from the data in Fig. 4 to be
Another facet of tolerance to 5-CHO-THF may be its sequestration in mitochondria. Assuming that the soluble protein content of leaves is 10 mg g1 fresh weight and that mitochondrial protein is 4% of the total (39), it can be estimated from the data of Figs. 3 and 4 that the mitochondria contain 50% of the total 5-CHO-THF in wild type leaves and 80% in mutant leaves. The basis for intramitochondrial retention of 5-CHO-THF may be that it is polyglutamylated, as are the bulk of mitochondrial folates (40), and that mitochondrial folate transporters prefer monoglutamates, as do most other folate carriers (41). Keeping much of the 5-CHO-THF inside mitochondria clearly reduces its potential to interfere with cytosolic or plastidial isoforms of folate enzymes. However, this is only a partial solution because plant mitochondria themselves contain various folate-dependent enzymes (42, 43) that, in other organisms, are sensitive to 5-CHO-THF (44). These include dihydrofolate reductase and thymidylate synthase and isoforms of methionyl-tRNA transformylase, 5,10-CH=THF cyclohydrolase, 5,10-methylene-THF dehydrogenase, and the purine synthesis enzyme aminoimidazole-4-carboxamide-1- -D-riboside transformylase.
It is therefore hard to escape the conclusion that another mechanism of plant tolerance to 5-CHO-THF is either relative insensitivity of mitochondrial enzymes to this compound or metabolic plasticity in the form of flux redistribution from mitochondrial to extramitochondrial isoforms, where the latter exist. Some support for flux redistribution comes from the accumulation of 10-CHO-/5,10-CH=THF in photorespiring mutant plants. This must have been outside mitochondria as the mitochondrial 10-CHO-/5,10-CH=THF pool did not change. Perhaps the extramitochondrial pool expands because of interference with mitochondrial one-carbon metabolism and then drives compensating fluxes through non-mitochondrial reactions. Although 10-CHO-THF and 5,10-CH=THF could not be distinguished analytically, it seems probable that 10-CHO-THF predominates in vivo because the chemical equilibrium between the two forms lies strongly (
Apparent insensitivity could be due, in part at least, to the sheer abundance of mitochondrial folate-dependent enzymes: SHMT and glycine decarboxylase alone constitute up to 40% of soluble mitochondrial protein (45). At such high abundances, it can be calculated from the data of Fig. 4 that even in mutant mitochondria, containing
Because 5-CHO-THF is quite chemically stable and 5-FCL is the only enzyme known to metabolize it, the action of SHMT in a 5-FCL mutant would in the long run be expected to convert much of the cellular folate pool to 5-CHO-THF, especially under photorespiratory conditions. That the total leaf 5-CHO-THF pool increased no more than 2.6-fold (to a maximum of 31% of total folate) suggests that there may be another, unknown, way to metabolize 5-CHO-THF, or in effect to detoxify it, and that this contributes to tolerance. The same may hold true of yeast, where the 5-CHO-THF level increased only 4-fold in a 5-FCL knock-out (2), and of those bacteria that apparently lack 5-FCL genes (17, 18). Unlike the 5-FCL reaction, which salvages 5-CHO-THF as an intact folate, any alternative detoxification route seems likely to entail cleavage of the p-aminobenzoate-glutamate bond or the pteridine-p-aminobenzoate bond (2, 46). In support of the latter possibility, exploratory work in our laboratory has shown a large ( Finally, we saw no evidence that 5-FCL moonlights as a folate-degrading enzyme in plants, as has been suggested for the mammalian enzyme (19). Although total folate content indeed increased in the 5-FCL mutant, it did so only under photorespiratory conditions, suggesting that the increase was not due to the mutation per se but rather to its metabolic sequelae.
* This work was supported in part by the Florida Agricultural Experimental Station, by an endowment from the C. V. Griffin, Sr. Foundation, and by Grants MCB-0114117 and MCB-0129944 from the National Science Foundation and approved for publication as Journal Series No. R-10807. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
** To whom correspondence should be addressed: Horticultural Sciences Dept., University of Florida, Gainesville, FL 32611. Tel.: 352-392-1928 (ext. 334); Fax: 352-392-5653; E-mail: adha{at}mail.ifas.ufl.edu.
1 The abbreviations used are: 5-CHO-THF, 5-formyltetrahydrofolate; 10-CHO-THF, 10-formyltetrahydrofolate; 5,10-CH=THF, 5,10-methenyltetrahydrofolate; 5,10-CH2-THF, 5,10-methylenetetrahydrofolate; 5-CH3-THF, 5-methyltetrahydrofolate; 5-FCL, 5-formyltetrahydrofolate cycloligase; SHMT, serine hydroxymethyltransferase; GC-MS, gas chromatography-mass spectrometry; TES, 2-{[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]amino}ethanesulfonic acid; CHES, 2-(cyclohexylamino)ethanesulfonic acid; Tricine, N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine.
We thank Michael Ziemak, Joseph Leykam, and Beverly Chamberlin for technical assistance.
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