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J. Biol. Chem., Vol. 280, Issue 40, 34178-34185, October 7, 2005
Independent Regulation of Hsp70 and Hsp90 Chaperones by Hsp70/Hsp90-organizing Protein Sti1 (Hop1)*From the Laboratory of Biochemistry and Genetics, NIDDK, National Institutes of Health, Bethesda, Maryland 20892-0851
Received for publication, May 17, 2005 , and in revised form, August 3, 2005.
Hsp70 and Hsp90 protein chaperones cooperate in a protein-folding pathway required by many "client" proteins. The co-chaperone Sti1p coordinates functions of Hsp70 and Hsp90 in this pathway. Sti1p has three tetratricopeptide repeat (TPR) domains. TPR1 binds Hsp70, TPR2a binds Hsp90, and the ligand for TPR2b is unknown. Although Sti1p is thought to be dedicated to the client folding pathway, we earlier showed that Sti1p regulated Hsp70, independently of Hsp90, in a way that impairs yeast [PSI+] prion propagation. Using this prion system to monitor Sti1p regulation of Hsp70 and an Hsp90-inhibiting compound to monitor Hsp90 regulation, we identified Sti1p mutations that separately affect Hsp70 and Hsp90. TPR1 mutations impaired Sti1p regulation of Hsp70, but deletion of TPR2a and TPR2b did not. Conversely, TPR2a and TPR2b mutations impaired Sti1p regulation of Hsp90, but deletion of TPR1 did not. All Sti1p mutations variously impaired the client folding pathway, which requires both Hsp70 and Hsp90. Thus, Sti1p regulated Hsp70 and Hsp90 separately, Hsp90 is implicated as a TPR2b ligand, and mutations separately affecting regulation of either chaperone impair a pathway that is dependent upon both. We further demonstrate that client folding depended upon bridging of Hsp70 and Hsp90 by Sti1p and find conservation of the independent regulation of Hsp70 and Hsp90 by human Hop1.
Hsp70 and Hsp90 are abundant, essential, and stress-inducible chaperones that assist protein folding. By binding and releasing hydrophobic surfaces on partially folded proteins, Hsp70 plays a general role in helping proteins adopt and maintain native conformations. It also acts in cellular processes during which proteins are partially folded, such as translation and transport across membranes, and protects cells from stress by preventing protein aggregation. Although Hsp90 might also have a general role as a protein chaperone, it is known to act in a well characterized folding pathway for a large number of "client" proteins in the cell, many of which, such as steroid hormone receptors, kinases, and transcription factors, are involved in signaling (1, 2). This client folding pathway involves Hsp70 and its co-chaperone Hsp40 as well as many co-chaperones that regulate activity of Hsp90. Client proteins interact first with Hsp40 (3), which helps target them to Hsp70, and then are transferred from Hsp70 to Hsp90 to finish folding. The co-chaperone Sti1p (Hop1 in humans) is thought to facilitate this transfer by binding to both Hsp90 and the substrate-bound Hsp70, forming a physical link between them (4-6). Other co-chaperones then bind to Hsp90 while Hop1 and Hsp70 are released from the complex. In vitro, Sti1p both stimulates ATPase activity of Hsp70 and inhibits ATPase activity of Hsp90 (7, 8). These functions of Sti1p agree with data suggesting that in addition to simply bridging Hsp70 and Hsp90, Sti1p and Hop1 affect the client folding pathway through regulation of the conformations and ATPase cycles of the two chaperones (9, 10). The domain structure and function of Sti1p are evolutionarily conserved. Tetratricopeptide repeat motifs at the amino terminus (TPR1)2 and middle region (TPR2a) mediate the physical interactions of Sti1p with Hsp70 and Hsp90, respectively. A third TPR region immediately downstream of TPR2a, namely TPR2b, is also important for Sti1p function, but the ligand for this domain is unknown. Sti1p also has smaller regions containing conserved aspartate and proline residues following TPR1 (designated DP1) and following TPR2b (designated DP2). Altering TPR residues of Hop1/Sti1p that are known to be important for making contacts with Hsp70 and Hsp90 predictably reduce the ability of Hop1 to physically interact with them and to function in place of Sti1p in a yeast client folding system (11-13). Mutations in DP2, but not DP1, were also shown to be important for Hop1 function and its interaction with human Hsp70.
Although Sti1p and Hop1 have been found in complexes without Hsp70 and Hsp90, as a co-chaperone Sti1p is thought to be dedicated to the client folding pathway. Our recent work with the yeast [PSI+] prion, however, showed that Sti1p was required for a mutant Hsp70 (Ssa1-21p) to impair [PSI+] propagation and that [PSI+] was unaffected by various conditions that impair Hsp90 function (14). SSA1-21 [PSI+] cells thus provide a unique system for monitoring the ability of Sti1p to specifically regulate Hsp70 function. Specific regulation of Hsp90 function by Sti1p is important for cell growth, as depleting Sti1p makes cells hyper-sensitive to lethal effects of compounds such as radicicol that specifically inactivate Hsp90. Because SSA1-21 cells have normal sensitivity to radicicol, which has no effect on [PSI+] propagation, these cells are also useful for monitoring the ability of Sti1p to specifically regulate Hsp90 function. We pursued our hypothesis that Sti1p can independently regulate Hsp70 and Hsp90 by using our system to search for mutations in Sti1p that separately affect [PSI+] and radicicol sensitivity. We identified several such mutations, showing that these phenotypes are dependent upon the ability of Sti1p to regulate Hsp70 and Hsp90 separately. Not unexpectedly, Sti1p mutations that affect Hsp70 function were located in regions known to be important for physical interactions of Sti1p with Hsp70, and those affecting Hsp90 function were in regions important for Sti1p interaction with Hsp90. Further, we have shown conservation of the independent regulation of Hsp70 and Hsp90 between Sti1p and its human homolog Hop1.
Yeast Strain, Media, and Growth ConditionsStrain 1016 (Mat kar1-1 SUQ5 ade2-1 his3 202 leu2 1 trp1 63 ura3-52 SSA1-21 sti1::KanMX (14)) was used. Media with limiting adenine ( 10 mg/l) have enough adenine to allow ade2-1 cells to grow but not enough to repress the adenine biosynthetic pathway. In ade2-1 cells, a pigmented adenine precursor accumulates under these conditions because of a block in the pathway. 1/2 YPD (composed of 0.5% yeast extract, 2% peptone, and 2% glucose) is a complex medium with a limiting but undefined amount of adenine. YPAD (excess adenine) is similar but contains 1% yeast extract and is supplemented with 400 mg/liter adenine. Synthetic media are described (15). Cells were grown at 30 °C unless indicated otherwise.
PlasmidsPlasmids pRS316STI1 and pRS315STI1 are single copy URA3- and LEU2-based vectors, respectively (16), with STI1 and 500 bp of 5' and 3' flanking DNA inserted into the BamHI site. Plasmids pG/N795 and pUC
MutagenesisPlasmid pRS316STI1 was mutagenized by exposure to hydroxylamine for 1 h at 75 °C as described (19). Site-directed mutagenesis of pRS316STI1 using the QuikChange kit (Stratagene, Burlingame, CA) and appropriate mismatched primers was done to construct Sti1-K75E. Sti1
Isolation of Sti1p MutantsSSA1-21 sti1 Nonsense Suppression (Stop Codon Read-through) AssaysA dual-luciferase assay system (18) was used as described (14). Briefly, early log phase cultures of cells expressing translational fusions of Renilla and firefly luciferase genes, with UGG (from pYDL505) or UAA (from pYDL506) at the sixth codon of the firefly gene, were assayed for luciferase activity using the Promega dual-luciferase assay system in a Zylux FB15 luminometer.
Hormone Induction AssaysAssays were performed as described (21). Briefly, deoxycorticosterone (25 nM final) was added to early log phase cultures, and after 70 min samples were withdrawn for Yeast Cell Extracts and Western AnalysisTo prepare whole cell extracts, washed cell pellets were suspended in lysis buffer (50 mM Tris-HCl, pH 7.4, 10 mM EDTA, 1 mM dithiothreitol, protease inhibitor (Roche Applied Science)) and broken by agitation with silica beads in a Mini Bead Beater (Biospec Products). Samples containing 20 µg of protein were assayed by Western analysis. The Sti1p antibody used was generated in rabbits using a synthetic peptide corresponding to Sti1p residues 530-544 as antigen. Hsp70 (SPA-822) and Hsp90 (SPA-840) antibodies were from Stressgen, and Hsp104 antibody was a gift from John Glover (University of Toronto). Quantitative RT-PCR AssaysQuantitative RT-PCR assays were performed using standard methods as described (22).
Identifying Sti1p Mutations That Alter Regulation of Hsp70 and Hsp90The yeast [PSI+] prion is a self-replicating aggregated form of the translation release factor Sup35p (eRF3) (23-26). [PSI+] propagates in the cytoplasm and is transmitted virtually infallibly between cells as they divide. Aggregation of Sup35p in [PSI+] cells decreases the ability of Sup35p to function in translation termination, which suppresses the ade2-1 nonsense allele in certain yeast strains (27). Nonsuppressed ade2-1 cells require adenine and appear red on limiting adenine because of the accumulation of an Ade2p substrate (see "Experimental Procedures"). Suppression of ade2-1 by [PSI+] confers growth without adenine and a normal white colony color.
We showed earlier that a mutant Hsp70 (Ssa1-21p) impairs [PSI+] propagation, causing a pink coloration on limiting adenine and frequent mitotic loss of [PSI+], which is diagnosed as red [psi-] colonies. Unlike wild type cells, SSA1-21 [PSI+] cells also require adenine at 30 °C (28). Depleting the Hsp90 co-chaperone Sti1p in SSA1-21 cells restores a normal [PSI+] phenotype, so SSA1-21 sti1
We used these cells to screen for such mutations. As expected, SSA1-21 sti1 Many clones both required adenine at 30 °C and were hypersensitive to radicicol, and therefore they were defective for Sti1p regulation of both Hsp70 and Hsp90. Among these, we expected to find sti1 alleles with early termination codons. We also considered that single missense mutations might completely inactivate Sti1p, and therefore we sequenced 35 alleles that failed to complement Sti1p in both screens. All contained either early termination codons or multiple missense substitutions (data not shown), indicating that single missense mutations that disrupt Sti1p regulation of both Hsp70 and Hsp90, if they exist, are rare. We also constructed STI1 alleles lacking domains known to be important for specific interactions of Sti1p with Hsp70 and Hsp90 (6, 13, 29). Lastly, we assessed the abilities of human Hop1, a specific Hop1 mutant (K73E) known to be weakened in its interaction with human Hsp70 (13), and the homologous Sti1p mutant (K75E), to complement Sti1p function in [PSI+] propagation. The STI1 deletion alleles and the locations of mutations identified in the screens are diagrammed in Fig. 1.
Sti1p Mutations That Affect Regulation of Hsp70The degree of red coloration of [PSI+] colonies and the frequency of appearance of red [psi-] colonies, which are readily observed on plates with limiting adenine, qualitatively reflect the degree to which Sti1p functions in the impairment of [PSI+]in SSA1-21 cells. Cells expressing Sti1
To quantify the degree to which the mutations affected Sti1p function with regard to [PSI+], we measured the extent of read-through of a nonsense codon in a luciferase reporter transcript (Fig. 3). There was a general correlation between the overt [PSI+] phenotype and the degree to which [PSI+] was capable of causing nonsense suppression. It is readily apparent from the plot of the data that substitutions spanning TPR1, in particular between Ser44 and Ala63, most significantly reduced the ability of Sti1p to regulate Ssa1-21p with regard to [PSI+]. As anticipated, Sti1 TPR1 was phenotypically Sti1-null regarding its effects on [PSI+]. As the substitutions that were identified in the screen for defects in the ability of Sti1p to regulate Hsp90 were selected to retain the ability to regulate Hsp70, they predictably had modest if any effects on [PSI+].
Sti1p Mutations That Affect Regulation of Hsp90Sti1p regulation of Hsp90 is reflected in the hypersensitivity of cells lacking Sti1p to growth inhibition by the small compound radicicol, which specifically inactivates Hsp90. The degree of sensitivity to such growth inhibition of cells expressing the Sti1p mutants in place of Sti1p is shown in Fig. 4. It is clear from these data that the C-terminal portion of Sti1p is critical for the ability of Sti1p to regulate Hsp90 with regard to its essential function. All of the mutations isolated as causing hypersensitivity to radicicol were in residues within TPR2a, TPR2b, and DP2 or were predicted to cause deletions of these regions by introducing premature termination codons. The TPR2b mutations provide the first in vivo evidence that Hsp90 is a ligand for this Sti1p domain. Also, cells expressing Sti1-Q564stop (Q564X) and the engineered Sti1 DP2 proteins remained completely hypersensitive to the lethal effects of radicicol, suggesting that an intact DP2 region is necessary for Sti1p regulation of Hsp90. In contrast, the Sti1 TPR1 and Sti1 DP1 proteins conferred nearly wild type sensitivity to radicicol, which indicates that TPR1 and DP1 are dispensable for Sti1p regulation of Hsp90 in this context.
Effects of Sti1p Mutations on Steroid Hormone SignalingWe next tested the function of the Sti1p mutants in a process that requires simultaneous regulation of Hsp70 and Hsp90 by Sti1p. The folding pathway for Hsp90 client proteins in which Sti1p acts by coordinating Hsp70 and Hsp90 functions is highly conserved. Among client proteins in humans are steroid hormone receptors. Although yeast lack such receptors, a system consisting of hormone receptors and reporter genes in which expression is regulated by hormone-induced activation of the receptor has been developed for monitoring steroid hormone signaling in yeast (30, 31). Proper folding of the receptor, which allows it to bind ligand and activate expression of the reporter, requires its interaction with the Hsp70/Sti1p/Hsp90 machinery. This system has provided valuable insight into functions of these and other mammalian and yeast factors that are involved in this folding and signaling process (32-34).
We monitored Sti1p function in this client folding pathway by quantifying activity of
All of the other Sti1p mutations, except DP1, caused substantial reduction in GR activation. Although Sti1 DP2 had only a modest effect on Hsp70 regulation as measured by its affects on [PSI+], it only slightly restored GR activation, suggesting that its defect in GR activation was related to its inability to complement Sti1p regarding Hsp90 regulation. The G403D and T526I mutations in TPR2b also reduced GR activation considerably, further showing the importance of TPR2b for Sti1p function, presumably through regulation of Hsp90 in this pathway. Overall, the degree to which the Sti1p mutations reduced GR activation correlated roughly with the degree to which they reduced the ability to regulate Hsp70 or Hsp90 independently, which suggests that the basis for Sti1p regulation of the individual and cooperative Hsp70 and Hsp90 functions is similar.
GR Activation Requires Bridging of Hsp70 and Hsp90 by Sti1pIn addition to regulating the enzymatic activities of Hsp70 and Hsp90, Sti1p is thought to act in the Hsp90 client folding pathway by simultaneously binding the two chaperones to bridge them and facilitate transfer of substrate from Hsp70 to Hsp90. We used our system to test this hypothesis by simultaneously expressing Sti1
Human Hop1 Regulates [PSI+] Propagation Like Sti1pOthers have shown that the loss of GR signaling in a yeast strain lacking Sti1p is restored by human Hop1 and that a mutation in Hop1 (K73E) that reduces Hop1 interaction with human Hsp70 reduces Hop1 function in this GR signaling (13, 29). Thus, Hop1 and Sti1p are functionally conserved with regard to GR activation. We transformed SSA1-21 sti1 Hop1 was capable of weakening the [PSI+] phenotype (Fig. 2, center right) and inhibiting [PSI+]-mediated nonsense suppression (Fig. 3) to levels similar to that of Sti1p, indicating that Hop1 functions like Sti1p with regard to [PSI+] propagation. Additionally, the K73E mutation reduced the ability of Hop1 to inhibit [PSI+], suggesting that these Hop1 effects on [PSI+] were mediated through regulation of Hsp70. The K75E mutation of Sti1p also reduced the ability of Sti1p to weaken [PSI+] (Figs. 2 and 3), and both Hop1-K73E and Sti1-K75E were impaired to a similar degree for GR signaling (Fig. 5B). These data demonstrate functional conservation between Sti1p and Hop1 in both [PSI+] propagation and GR activation. Additionally, neither Hop1-K73E nor Sti1-K75E was altered in regulating sensitivity to radicicol compared with their wild type counterparts, which shows that the distinct regulation of Hsp70 and Hsp90 by Sti1p and Hop1 is evolutionarily conserved.
Abundance of Sti1 and Heat Shock ProteinsTo assess the possibility that effects caused by the mutations were due to altered protein production or stability, we used Western analysis to determine overall abundance of the Sti1 proteins (Fig. 7A). Except for Sti1-Q564stop (Q564X) and Sti1
Our Sti1p antibody recognizes an epitope spanning residues 530-544, which overlaps the border between TPR2b and DP2. Because this epitope is absent in the Sti1-Q159stop (Q159X), Sti1 It was also possible that the Sti1p mutations were exerting their effects by altering expression of Hsp70, Hsp90, or Hsp104. Hsp104 is essential for [PSI+] propagation and can interact with Sti1p under certain non-optimal growth conditions (36). We therefore repeated the Western analysis to measure abundance of these chaperones. As shown in Fig. 7C, there were modest variations in steady-state abundance of the three chaperones in cells expressing the different Sti1 proteins, but the small relative differences were not likely to contribute significantly to the effects caused by the Sti1p mutations. Rather, the effects of the mutations are more likely due to disruptions in the ability of Sti1p to interact physically with the chaperones or to regulate their enzymatic activities.
Although the role for Sti1p in coordinating action of Hsp70 and Hsp90 in the client protein folding pathway is well established, we now demonstrate that Sti1p can independently regulate the individual functions of Hsp70 and Hsp90. We also show that physical linking of Hsp70 and Hsp90 by Sti1p is required for efficient function of the client folding pathway. Our results delineate Sti1p domains that specify differences in Sti1p regulation of the two chaperones and identify novel amino acid residues that are critical for these Sti1p functions. We further identify Hsp90 as a ligand for TPR2b and provide evidence that the independent regulation of Hsp70 and Hsp90 is evolutionarily conserved by showing complementary functions of the human Sti1p homolog Hop1. Previous in vitro data defines TPR1 and TPR2 as mediating Hop1/Sti1p interactions with Hsp70 and Hsp90, respectively (5, 37). In agreement with these studies, we identified TPR1 as largely sufficient for Sti1p regulation of Hsp70 with regard to [PSI+] and TPR2 as essential for regulation of Hsp90. Moreover we show that TPR1 was dispensable for regulation of Hsp90 with regard to the essential function of Hsp90 and that TPR2 was dispensable for Sti1p regulation of Hsp70. Nevertheless, as both Hsp70 and Hsp90 are important for client protein folding, mutations affecting regulation of either chaperone predictably impaired steroid receptor activation, and we found that regulation of this activation required both TPR1 and TPR2 to be present on the same polypeptide. Although the ligand for TPR2b is unknown, others have found that point mutations in TPR2b of Hop1, selected by sequence alignment as in residues possibly involved in chaperone interactions, reduce Hop1 binding to Hsp70 but not to Hsp90 (13). Although these data were stated to contrast with a report that deletions within TPR2b inhibit Hsp90 binding (5, 13) they pointed to Hsp70 as a putative ligand for TPR2b. Unlike all of our Sti1p mutations, the Hop1 TPR2b substitutions did not affect Hop1 function in GR activation in yeast. Our mutations in TPR2b, identified in a screen of random Sti1p mutants, caused radicicol hypersensitivity and impaired GR activation without affecting [PSI+]. These physiological effects clearly reveal the importance of TPR2b for Hsp90 regulation and suggest that TPR2b does not influence Hsp70 activity directly. They also uncover limitations of in vitro interaction studies in predicting the effects of mutations in vivo. Aside from some of the effects of mutating DP2, our data agree with earlier reports showing that TPR1 and TPR2a of Hop1/Sti1p are important for physical interactions with Hsp70 and Hsp90, respectively, and that DP2 is more important than DP1 for steroid receptor activation (5, 6, 11-13, 37). The Sti1p mutant lacking DP2 was nonfunctional with regard to radicicol sensitivity but was affected only modestly with regard to [PSI+]. Thus, although DP2 played some role in Hsp70 regulation, it was more important for the regulation of Hsp90. Earlier work showing that point mutations in DP2 reduced both Hsp70 binding in vitro and GR activation in yeast led to the proposal that DP2 and TPR1 cooperate to bind Hsp70 (13). Although our data do not rule out this possibility, they show that any loss of Hsp70 interaction that might be caused by truncation or complete deletion of DP2 has only small effects on Hsp70 regulation in vivo and that the major cause of the reduced GR activation by DP2 mutation might be the impaired ability of Hop1 to regulate Hsp90. It is possible that DP2 function either is affected differentially by deletion and substitution mutations or has diverged between Hop1 and Sti1p. Whatever the reason, the discrepancies between the two studies remain to be resolved experimentally.
We earlier showed that Ssa1-21p impairs [PSI+] propagation through enhanced substrate binding because of increased ATP hydrolysis, which promotes substrate binding, or decreased ADP release, which stabilizes the substrate-bound state (14, 38). As Sti1p is a potent activator of Ssa1 ATPase in vitro (7), its depletion, which should reduce Ssa1-21p ATPase activity, has the expected effect of improving [PSI+]in SSA1-21 cells. Hop1 does not stimulate ATPase of Ssa1p in vitro, however, so its ability to restore inhibition of [PSI+] in SSA1-21 sti1 There was a correlation between the extent of impairment of either Hsp70 or Hsp90 and the extent to which the client folding pathway, which depends on both chaperones, was affected. This observation holds even if regulation of one of the chaperones was essentially unaffected (TABLE ONE). These results suggest that the way Sti1p regulates Hsp70 and Hsp90 both independently and as cooperative chaperones is similar. Moreover, the ability to separate lethal effects of Hsp90-inhibiting compounds from effects on [PSI+] propagation suggests that the essential function of Hsp90 is unrelated to the ability of Sti1p to regulate Hsp70 and, therefore, is separate from the client folding pathway.
Our inability to identify single missense mutations in Sti1p that impaired regulation of both Hsp70 and Hsp90 is consistent with our findings that the separate domains of Sti1p confer the ability to regulate Hsp70 and Hsp90, suggesting that at least two mutations might be required to eliminate the ability of Sti1p to regulate both chaperones. These observations suggest that Sti1p does not have a specific activity essential for regulation of both Hsp70 and Hsp90. Aside from bridging Hsp70 and Hsp90, Sti1/Hop1 can regulate enzymatic activities of these chaperones (9, 10). The mechanisms underlying this regulation are not well understood, and it is possible that simply binding to the chaperones is enough for Sti1p to influence ATPase cycles or interactions of other regulatory factors. Further work with our novel mutants, in particular those altered in residues predicted to be outside of chaperone interaction surfaces, will aid in elucidating these regulatory mechanisms.
* The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. 1 To whom correspondence should be addressed: Bldg. 8, Rm. 407, Laboratory of Biochemistry and Genetics, NIDDK, National Institutes of Health, 8 Center Dr., Bethesda, MD 20892-0851. Tel.: 301-594-1316; Fax: 301-496-9631; E-mail: masisond{at}helix.nih.gov.
2 The abbreviations used are: TPR, tetratricopeptide repeat; RT, reverse transcription; GR, glucocorticoid receptor.
We thank David Smith and Jonathan Dinman for plasmids and Andy Golden for critical review of the manuscript.
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