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J. Biol. Chem., Vol. 280, Issue 5, 3166-3177, February 4, 2005
Regulation of Chicken ccn2 Gene by Interaction between RNA cis-Element and Putative trans-Factor during Differentiation of Chondrocytes*![]() ![]() ¶ ¶![]() ![]() ||
From the
Received for publication, October 13, 2004 , and in revised form, November 16, 2004.
CCN2/CTGF is a multifunctional growth factor. Our previous studies have revealed that CCN2 plays important roles in both growth and differentiation of chondrocytes and that the 3'-untranslated region (3'-UTR) of ccn2 mRNA contains a cis-repressive element of gene expression. In the present study, we found that the stability of chicken ccn2 mRNA is regulated in a differentiation stage-dependent manner in chondrocytes. We also found that stimulation by bone morphogenetic protein 2, platelet-derived growth factor, and CCN2 stabilized ccn2 mRNA in proliferating chondrocytes but that it destabilized the mRNA in prehypertrophic-hypertrophic chondrocytes. The results of a reporter gene assay revealed that the minimal repressive cis-element of the 3'-UTR of chicken ccn2 mRNA was located within the area between 100 and 150 bases from the polyadenylation tail. Moreover, the stability of ccn2 mRNA was correlated with the interaction between this cis-element and a putative 40-kDa trans-factor in nuclei and cytoplasm. In fact, the binding between them was prominent in proliferating chondrocytes and attenuated in (pre)hypertrophic chondrocytes. Stimulation by the growth factors repressed the binding in proliferating chondrocytes; however, it enhanced it in (pre)hypertrophic chondrocytes. Therefore, gene expression of ccn2 mRNA during endochondral ossification is properly regulated, at least in part, by changing the stability of the mRNA, which arises from the interaction between the RNA cis-element and putative trans-factor.
Bone is formed by endochondoral ossification and intramembane ossification. During endochondral ossification (reviewed in Ref. 1), chondrocytes first proliferate; then they become mature cells, which produce extracellular matrix compounds such as type II collagen and aggrecan. Thereafter, the cells eventually differentiate into the hypertrophic chondrocytes, which produce type X collagen and alkaline phosphatase. At the terminal stage of endochondral ossification, the cartilage matrix becomes mineralized and is invaded by blood vessels, and the chondrocytes are thought to undergo apoptosis. Through this process, cartilage is replaced by bone. A number of hormones, such as parathyroid hormone (2) and active forms of vitamin D3 (24), and growth factors, such as fibroblast growth factor-2 (5), transforming growth factor- (TGF- 1 (6, 7)), bone morphogenetic proteins (BMPs (810)), parathyroid hormone-related protein (2,10), and platelet-derived growth factor (PDGF (11)), have been reported to be involved in the proliferation and differentiation of chondrocytes during endochondral ossification.
CCN2 (connective tissue growth factor/hypertrophic chondrocyte-specific gene product number 24: CTGF/Hcs24) is a cysteine-rich secretory protein of 3638 kDa; it belongs in the CCN family (reviewed in Refs. 1216), which consists of ccn1 (cef-10/cyr61 (17, 18)), ccn2 (ctgf/hcs24/fisp12 (1922)), ccn3 (nov (23)), and several related genes such as ccn4 (elm-1/wisp-1 (24, 25)), ccn5 (ctgf-3/wisp-2/cop1 (25, 26), and ccn6 (wisp-3 (25)). CCN2 was initially isolated from angioendothelial cells as a growth factor related to PDGF and was shown to have PDGF-like mitogenic and chemotactic activities for fibroblasts (19, 2730). Nowadays, however, CCN2 is no longer regarded as an accessory factor of PDGF but has been shown to be a multifunctional growth factor that regulates the growth and/or differentiation of various cells, including vascular endothelial cells (19, 3133). Furthermore, we have reported that CCN2 stimulates both the growth and differentiation of chondrocytes and osteoblasts (22, 34, 35), indicating crucial roles of CCN2 in endochondral ossification.
These findings pointing to multiple physiological and/or pathological roles of CCN2 indicate that the gene expression of ccn2 is regulated at multiple steps, such as transcriptional, post-transcriptional, and translational. However, as to the molecular regulatory mechanisms governing ccn2 gene expression, although a few studies have been reported, most of these mechanisms still remain to be investigated. For instance, TGF- In the present study, we reveal that gene expression of chicken ccn2 mRNA is regulated not only transcriptionally, but also post-transcriptionally during the differentiation of chondrocytes and that a cis-element in the 3'-UTR of ccn2 mRNA and its putative trans-factor counterpart collaboratively play an important role in the post-transcriptional regulation by determining the stability of ccn2 mRNA.
Cell Isolation and CultureChicken embryonic fibroblasts (CEF cells) were isolated from a 10-day-old whole chicken embryo and maintained in Dulbecco's modified Eagle minimum essential medium supplemented with 10% fetal bovine serum (FBS) in humidified air containing 5% CO2 at 37 °C. Chicken upper sternum chondrocytes (US cells) and lower sternum chondrocytes (LS cells) were isolated from the cephalic 1/3 portion and caudal 1/3 portion, respectively, of the sternal cartilage of 18-day-old chicken embryos and maintained in high-glucose Dulbecco's modified Eagle minimum essential medium supplemented with 10% FBS in humidified air containing 5% CO2 at 37 °C, as described previously (41). Growth FactorsRecombinant human BMP 2 and recombinant human PDGF-BB were purchased from R&D Systems (Minneapolis, MN) and Sigma-Aldrich, respectively. Human recombinant CCN2 was prepared as described previously (34).
Preparation for HybridizationClone A1/5 containing a full-length chicken ccn2 was utilized as a probe for Northern blot analysis of the ccn2 gene, as described in a previous study (41), and a 3' 100-base fragment of ccn2 3'-UTR, which is described in another subsection of this report, was utilized as a probe in the RNase protection assay. The probes of chicken The five amplicons were subcloned into pGEM T-Easy (Promega, Madison, WI) by a TA-cloning method. Proper construction of all plasmids was confirmed by nucleotide sequencing, and one of the plasmids by which the antisense strand mRNA can be transcribed from the bacteriophage T7 polymerase promoter was selected and prepared for each gene.
For hybridization, the plasmids of ccn2, RNA Preparation and Northern Blot AnalysisTotal cellular RNA was isolated by use of Isogen (Nippon Gene, Tokyo, Japan), according to the manufacturer's protocol. Northern blot analysis was carried out as described previously (41). Total RNA was denatured by glyoxysal, separated on 1% agarose gels, and then blotted onto nylon membranes (Hybond N, Amersham Biosciences). After blotting, the membrane was fixed with 5% acetic acid and stained with 0.02% methylene blue to visualize ribosomal RNAs, hybridized, washed, and subsequently autoradiographed. The optical density of each signal band of the autoradiography was quantified by using commercial computer software (Quantity One, PDI Inc., New York, NY).
Nuclear Run-on AnalysisNuclear run-on assays were carried out according to an established described protocol (48), with a slight modification. The nuclei of the cells grown in 10-cm tissue culture dishes were isolated and suspended in 50 mM Tris-HCl (pH 8.0), 40% glycerol, 5 mM MgCl2, and 0.1 mM EDTA; aliquots of the suspension were then incubated at 30 °C for 2 h with ATP, CTP, and GTP (each at 2.5 mM), and 100 µCi of [
For preparation of membranes, the plasmids containing chicken RNA Degradation Analysis and RNase Protection AssayThe cells in 10-cm tissue culture dishes were grown until subconfluent, and then 10 µg/ml actinomycin D (Sigma Aldrich) was added to the cultures to arrest de novo RNA synthesis. After properly timed intervals, total cellular RNA was isolated and used for the RNase protection assay. RNase protection assay was carried out with a commercial kit (RPA III Kit: Ambion, Austin, TX), according to the manufacturer's protocol. Total RNA (3 µg) was hybridized with 1 x 104 cpm of ccn2 or firefly luciferase probe in the presence of 1 x 103 cpm of 18 S rRNA probe as an internal control for 16 h at 42 °C. After hybridization, the RNA was digested by an RNase A/T1 mixture, precipitated with ethanol, and subjected to 6% PAGE in the presence of 7 M urea in 1x Tris borate-EDTA (TBE; 90 mM Tris, 90 mM borate, and 2 mM EDTA) buffer. The gels were subsequently dried and autoradiographed. The optical density of each signal band of the autoradiography was quantified by using Quantity One. Luciferase ConstructsThe SV40 promoter-driven firefly luciferase reporter plasmid (pGL3-control: Promega) was used to elucidate the effects of chicken ccn2 3'-UTR fragments, and a herpes simplex virus thymidine kinase (HSV-TK) gene promoter-driven Renilla luciferase expression plasmid (pRL-TK: Promega) was used as an internal control for transfection experiments to monitor the transfection efficiency. Plasmids pGL3L(+) and pGL3L() were described in a previous study (38); the luciferase-chicken ccn2 3'-UTR chimeric construct pGL3-FULL(+) and another chimeric construct with a ccn2 3'-UTR deletion mutant, 3'-400(+) were also described previously (41). Furthermore, in the present study, four other deletion mutants of chicken ccn2 3'-UTR were constructed by using the same backbone. All of the mutants were obtained by utilizing PCR technology from clone A1/5 (41), and the primer sequences used to obtain the respective mutants were as follow: 5'-TCT AGA TGC CTG TAT CCT TGC AAA G-3' for the sense primer of 3'-200, 5'-TCT AGA CTA TGG CTC TTT TTT TTT-3' for the sense primer of 3'-100 and 3'-100/50, 5'-TCT AGA CCA AAA GTT ACA TGT TTG-3' for the sense primer of 3'-50, 5'-CGG AAT TCC GAT ATA AAA AAT ATA AAT AC-3' for the antisense primer of 3'-200, 3'-100, and 3'-50, and 5'-GAA TTC AAA CAT GTA ACT TTT GGT C-3' for the antisense primer of 3'100/50. The sense and antisense primers contained an XbaI and an EcoRI site, respectively. The amplicons were double-digested with XbaI and EcoRI, purified, and subcloned between the corresponding sites in pGL3L(+) or pGL3L(). Proper construction of all plasmids was confirmed by nucleotide sequencing and restriction enzymatic digestion analyses. Schematic representations of the molecular constructs are shown in Fig. 3A.
DNA Sequencing and Computer AnalysisThe cDNA subcloned into each plasmid was sequenced by the dideoxy chain termination method (49) with a Big Dye Terminator Cycle Sequencing Ready Reaction Kit version 2.0 (Applied Biosystems, Foster City, CA) and an ABI PRISM 310 Genetic Analyser (Applied Biosystems). DNA sequence alignment and RNA secondary structure predictions were computed by using commercial computer software, GENETYX-MAC version 10 (Software Development, Tokyo, Japan). DNA Transfection and Luciferase AssayTwenty-four hours prior to transfection, 2 x 105 cells were seeded into each of several 35-mm tissue culture dishes. Cationic liposome-mediated DNA transfection was carried out with 1 µg of each pGL derivative in combination with 0.5 µgof pRL-TK, according to the manufacturer's optimized methodology (FuGENE6, Roche Applied Science). Forty-eight hours after the transfection, the cells were lysed in 500 µl of a passive lysis buffer (Promega), and the cell lysate was directly used for the luciferase assay. The dual luciferase assay system (Promega) was applied for the sequential measurement of firefly (reporter) and Renilla luciferase (transfection efficiency standard) activities with specific substrates of beetle luciferin and coelenterazine, respectively. Quantification of both luciferase activities was done with a luminometer (TD20/20, Turner Designs, Sunnyvale, CA), and calculation of relative ratios was carried out manually.
Analysis of RNA Folding in VitroFor preparation of template plasmids for in vitro transcription of cDNA corresponding to ccn2 3'-UTR, pGL3 derivatives containing the cDNAs were double-digested by XbaI and EcoRI, purified, and subcloned between the corresponding sites in pGEM3Zf(+). In vitro transcription was carried out, as described in another subsection. For synthesis of each sense RNA, the plasmid was linealized by EcoRI and transcribed by Sp6 bacterial polymerase in the presence of 50 µCi of [ The RNA in vitro folding assay was carried out as described previously (40), with a slight modification. 50,000 cpm of radiolabeled RNA was heated at 95 °C for 10 min, then gradually cooled to room temperature in RNA folding buffer consisting of 10 mM HEPES (pH 7.9), 40 mM KCl, 3 mM MgCl2, 1 mM dithiothreitol, 0.5 mg/ml yeast tRNA (Roche Applied Science), and 0.5 mg/ml bovine serum albumin. After having been cooled further to 4 °C, the RNAs were subjected to 6% native PAGE analysis in 0.5x TBE. Subsequently, the analytical gels were dried and autoradiographed.
RNA molecular size standards were produced via in vitro transcription of a mixture of DNA templates (Century Marker, Ambion) in the presence of [ Preparation of Nuclear and Cytoplasmic ExtractionThe nuclear and cytoplasmic extracts were prepared by using a CelLytic NuCLEAR Extraction Kit (Sigma Aldrich), according to the manufacturer's protocol. The protein concentrations of both fractions were determined with a BCA protein assay kit (Pierce), utilizing bovine serum albumin as a standard (50). RNA Electromobility Shift Assay (REMSA)REMSA was carried out according to the method described previously (51, 52), with a slight modification. The nuclear or the cytoplasmic extract containing 010 µg of protein was incubated at 25 °C for 30 min with 5 x 104 cpm of radiolabeled RNA in 19 µl of binding buffer (5 mM HEPES (pH 7.9), 7.5 mM KCl, 0.5 mM MgCl2, 0.1 mM EDTA, 0.5 mM dithiothreitol, 0.1 mg/ml yeast tRNA, and 0.1 mg/ml bovine serum albumin). Then, the binding mixture was incubated with 1 µl of 1/100 diluted RNase mixture (0.5 unit/µl RNase A and 20 units/µl RNase T1, Ambion) for a further 10 min at 37 °C. The RNA-protein complex was subjected to 6% native PAGE in 0.5x TBE buffer. The gels were subsequently dried and autoradiographed. For competition experiments, the extracts were preincubated with 20 ng of unlabeled competitor RNA for 30 min at 25 °C, followed by incubation with the radiolabeled RNA for another 30 min at 25 °C. UV Cross-linking AssayRNA-protein binding reactions were carried out as described in the subsection on REMSA. After RNase digestion, the protein-RNA complexes were put on ice and UV-irritated for 10 min by a UV cross-linker (Amersham Biosciences). Then, the samples were heated at 95 °C for 5 min in an SDS sample buffer (Sigma Aldrich) in the presence of 5% 2-mercaptoethanol and separated by 12.5% or 420% gradient SDS-PAGE. The gels were subsequently dried and autoradiographed.
Western Blot AnalysisExtracted proteins were heated at 95 °C for 5 min in SDS sample buffer in the presence of 5% 2-mercaptoethanol, separated by 12.5% SDS-PAGE, and transferred to a polyvinylidene difluoride membrane (Hybond P, Amersham Biosciences). The membrane was then blocked with 5% skim milk in Tris-buffered saline for 16 h at 4 °C. After having been blocked, the membrane was next incubated for 1 h at 37 °C with a 1/2,000 dilution of monoclonal anti- Statistical AnalysisUnless otherwise specified, all experiments were repeated at least twice, and similar results were obtained in the repeated experiments. Statistical analysis was carried out by Student's t test if necessary. Data are expressed as the mean ± S.D. p < 0.05 was considered significant.
Synthesis and Degradation Patterns of ccn2 mRNA Are Dependent Not Only on the Cell Type, but Also on the Differentiation Stage of ChondrocytesPrevious studies of ours (22, 41) revealed that ccn2 mRNA is strongly expressed in chondrocytes, particularly in hypertrophic chondrocytes. Therefore, we were interested in whether de novo synthesis and/or degradation patterns of ccn2 mRNA were different among different types of cells or not. Northern blot analysis (Fig. 1A) revealed that ccn2 mRNA was expressed faintly in CEF cells, in which only 2(I) collagen mRNA (a marker of fibroblasts and fibroblast-like cells) was expressed. In LS cells, in which 1(II) collagen (a marker of mature chondrocytes) was moderately expressed, ccn2 mRNA was more strongly expressed than in CEF cells (1.5-fold). Moreover, in US cells, in which not only the strongest expression of 1(II) collagen but also expression of 1(X) collagen (a marker of hypertrophic chondrocytes) was observed, the expression level of ccn2 mRNA was remarkably higher than that in CEF cells (2.5-fold) or in LS cells (1.6-fold). These results indicate that de novo synthesis and/or degradation of ccn2 mRNA was different among these cells; hence, we carried out a nuclear run-on assay and RNA degradation analysis to investigate the mechanism. The results of the nuclear run-on assay (Fig. 1B) revealed that the transcriptional activity producing ccn2 mRNA was the strongest in US cells and was moderate in LS cells, the findings of which are consistent with the results of Northern blot analysis. The difference in the relative transcriptional activity between CEF and LS cells was likely to be the same as that in the relative amounts of their steady-state mRNA (right panels of Fig. 1, A and B). However, the transcriptional activity in US cells (right panel of Fig. 1B) was at most 2-fold (versus CEF cells) and 1.4-fold (versus LS cells) higher, indicating that the increased transcriptional activity producing ccn2 mRNA did not fully support the increased amounts of steady-state mRNA. The results of RNA degradation analysis (Fig. 1C) accounted for this discrepancy. The stability of ccn2 mRNA in the LS cells was almost the same as that in CEF cells (t = 1.0 h). However, in US cells, the ccn2 mRNA was more stable (t = 1.5 h) than in CEF or LS cells. These results suggest that ccn2 mRNA should be regulated not only at the transcriptional stage, but also at the post-transcriptional stage, particularly by the regulation of the stability of mRNA in chondrocytes. As such, post-transcriptional regulation of ccn2 may play an important role in the regulation of CCN2 protein production during maturation and differentiation of chondrocytes.
Differential Response of ccn2 mRNA Stability to Growth Factors during Differentiation of ChondrocytesIt is reported that several growth factors stimulate the expression of ccn2 mRNA in rabbit growth plate chondrocytes (22). Therefore, next we analyzed whether the effects of the growth factors depended on the regulation of mRNA stability and de novo synthesis of mRNA or not. LS and US cells were stimulated with BMP2 (200 ng/ml), PDGF (10 ng/ml), or CCN2 (30 ng/ml) for 24 h in the presence of 10% FBS, and then the cells were subjected to Northern blot, nuclear run-on, and RNA degradation assays. In the presence of 10% FBS, 24-h stimulation by the growth factors had no significant effect on the transcriptional efficiency of the ccn2 gene in the nuclear run-on assay (Fig. 2A). However, RNA degradation analysis (Fig. 2B) demonstrated that these growth factors changed the stability of ccn2 mRNA differently, depending on the differentiation stage of the chondrocytes. In LS cells without growth factor stimulation, the half-life of ccn2 mRNA was 60 min. However, the cells stimulated by the growth factors uniformly showed significant increases in mRNA stability. Most surprisingly, stimulation by the growth factors significantly decreased ccn2 mRNA stability in US cells, an effect contrary to that on the LS cells. Of note, both the effect of increasing the stability in LS cells and that of decreasing it in US cells were observed when the stimulator was CCN2 itself. Taken together, these results suggest that the post-transcriptional regulation may play important roles in the precise control of the expression of ccn2 mRNA by altering the stability of the mRNA.
Locating the Minimal cis-acting Repressive Element in 3'-UTR of Chicken ccn2 mRNAIt is widely known that 3'-UTRs of many genes possess signal sequences within them that determine mRNA stability (53). Previous studies of ours revealed that there exists a strong cis-acting repressive element in the 3'-UTR of human (3840) and murine (39) ccn2 mRNAs. Furthermore, we recently obtained results (41) showing that the 400-base fragment at the 3'-end of 3'-UTR of chicken ccn2 mRNA also contains a cis-acting repressive element. However, the precise location of the minimal element remained to be clarified. Therefore, we sought to identify this cis-element by employing a transient expression and evaluation system using firefly luciferase fusion constructs, as we had done in previous studies (3841). As denoted in Fig. 3A, six chimeric firefly luciferase genes were designed and constructed. These plasmids and parental pGL3L plasmids were used for transfection, with Renilla luciferase co-expression as an internal control, of CEF, LS, and US cells, and a dual luciferase assay was then carried out (Fig. 3B). In all three cell types, three deletion mutants, i.e. 3'-200(+), 3'-100(+), and 3'-100/50(+) repressed luciferase gene expression in cis. FULL(+) did so as well. However, 3'-50(+) demonstrated much weaker cis-repressive effects than did the other three deletion genes and FULL(+). Of note, an antisense construct, 3'-100(), also showed a weak repressive effect. Furthermore, the repressive effects of all of the fragments were shown to be the strongest in CEF cells, moderate in LS cells, and relatively weak in US cells. These results indicate that the minimal element of chicken ccn2 3'-UTR for the cis-repressive effect on gene expression was located within the region of 3'-100/50 in an orientation- and cell type-dependent manner.
Accelerated Degradation of a Reporter RNA by Repressive Elements in the 3'-UTR of Chicken ccn2 mRNA in cisAs described in a previous subsection, chicken ccn2 3'-UTR repressed the expression of the reporter gene in cis. So next we investigated the effect of the fragments of 3'-UTR on the stability of cis-linked mRNA, utilizing RNA degradation analysis for the luciferase gene (Fig. 4). In all transfectants, luciferase mRNA was highly expressed, because SV40 is a very strong promoter. In the control, the half-life (t
Secondary Structure Formation of RNA Fragments of the 3'-UTR of Chicken ccn2 mRNAIt is also recognized that the cis-acting sequences in various mRNAs are able to form compact secondary structures (40). In line with this general finding, the fragments of 3'-UTR of chicken ccn2 mRNA, which conferred cis-repressive effects on reporter gene expression, were very rich in adenosine-uridine (AU-rich, Fig. 5), and computer analysis predicted that the RNAs of 3'-100 and 3'-100/50 could form stable secondary structures (data not shown). Thus, an RNA in vitro folding assay was carried out. In vitro transcription of those template cDNAs in the presence of [ -32P]CTP provided high quality corresponding RNAs that gave single bands with the expected electrophoretic mobility in 6% urea-denatured PAGE gels (Fig. 6A). Thereafter, the RNAs were forwarded to extensive in vitro folding assay (Fig. 6B). After heat denaturation and re-naturation by gradual cooling in the folding buffer, structured forms of 3'-100(+) and 3'-100() RNA fragments were observed, which confer higher electromobility than the unfolded form, in native 6% PAGE gels. A similar mobility-shift was also distinctively observed with 3'-100/50(+) RNA, although the change in electrophoretic mobility itself was modest. In contrast, no folded form was observed in the case of the 3'-50(+) RNA fragment under the same conditions. These results demonstrate that the folding efficiency of RNAs in vitro is consistent with the repressive effects on reporter gene expression in vivo, suggesting that the secondary structure formation of the corresponding fragment of 3'-UTR of ccn2 mRNA may be an important determinant for the repressive post-transcriptional regulation of gene expression.
Binding Profile of Nuclear and Cytoplasmic Protein(s) to 3'-UTR Fragments of ccn2 mRNA in VitroThe results described in previous subsections suggest that these self-folded fragments might be able to bind specific nuclear and/or cytoplasmic protein(s). To explore this point further, we conducted REMSA and UV cross-linking assays. As shown in Fig. 7A, an RNA mobility shift was observed by incubating the 3'-100 fragment with the nuclear and cytoplasmic extracts of CEF cells. Interestingly, the shifted RNA band, which resulted from binding with the nuclear protein, was stronger than that with the cytoplasmic protein. The 3'-50 fragment, which was not able to form a secondary structure in the in vitro folding assay, bound to neither the nuclear protein nor the cytoplasmic protein. However, the 3'-100/50 fragment showed almost the same result as obtained for the 3'-100 fragment. The results of the UV cross-linking assay (Fig. 7B) clearly indicate that 3'-100 and 3'-100/50 fragments were able to bind not only to the protein in the cytoplasmic extract, but also to the protein in the nuclear extract, with the latter giving much stronger signals. These findings are in agreement with the results of REMSA. Furthermore, these results also suggest that the bound protein in each extract may be identical and indicate that the molecular mass of the protein was 40 kDa.
Subsequent competition analysis confirmed the specificity of the observed interaction. Namely, co-incubation with an unlabeled competitor of the 3'-100 fragment completely abolished the RNA mobility-shift (Fig. 7C) and cross-linked signals (Fig. 7D) that resulted from the binding of 3'-100 and 3'-100/50 fragments to nuclear and cytoplasmic proteins. In the same way, an unlabeled competitor of the 3'-100/50 fragment also completely abolished the specific interaction. In contrast, the unlabeled 3'-50 fragment had no effect on the gel-shift or cross-linked signals, indicating that 3'-50 fragment was unable to compete with either 3'-100 or 3'-100/50 fragments in binding to nuclear and cytoplasmic proteins. These results indicate that the minimal element in the 3'-UTR of chicken ccn2 mRNA for binding to the putative 40 kDa-trans factor is present within the 3'-100/50 portion.
Profile of Binding of cis-Element in 3'-UTR of ccn2 mRNA to the Putative trans-Factor during Differentiation of ChondrocytesThe results in previous subsections showed that, depending on the differentiation stage of chondrocytes, the putative chicken ccn2 mRNA undergoes post-transcriptional regulation through its mRNA stability and suggested the involvement of a repressive regulatory system enabled by the cis-element and putative trans-factor. These findings prompted us to examine whether the binding of the cis-element to the putative trans-factor protein is dependent on the differentiation stage of chondrocytes or not. Therefore, utilizing the nuclear and cytoplasmic extracts of CEF, LS, and US cells, we conducted extensive REMSA and UV cross-linking analysis. As shown in Fig. 8A, a gel-shift was observed for radiolabeled 3'-100 RNA (left panel) or 3'-100/50 RNA (right panel) incubated with nuclear or cytoplasmic protein. Overall, it is clear that the signals indicating RNA-protein interaction were much stronger with proteins from LS cells than with those from US cells. Interestingly, incubating the probe with the cytoplasmic protein of LS cells gave the most prominent shifted bands. More interesting, the results of the gel-shift analysis revealed quite opposite patterns of the subcellular distribution of the binding protein between US and LS cells. The UV cross-linking assay (Fig. 8B) showed the same results as those of REMSA. By incubating the probe with the cytoplasmic protein of LS cells, a single band corresponding to the binding protein of putative 40-kDa trans-factor was observed most prominently. Incubation with the nuclear protein of LS cells also yielded a band of the same density. In contrast, in US cells, no signal was detected with the cytoplasmic protein, whereas the binding signal was still distinct with the nuclear protein. The results of Western blotting analysis (Fig. 8C) for lamin B1 (a nuclear protein) and
Profile of binding of cis-Element of ccn2 mRNA to Putative 40-kDa trans-Factor Is Regulated by Growth Factors during Maturation of ChondrocytesFinally, we investigated whether or not the growth factors that were shown to affect the stability of ccn2 mRNA, as described in a previous subsection, would also affect the binding between the cis-element and putative trans-factor. So, we carried out a UV cross-linking assay (Fig. 9A), utilizing the nuclear and cytoplasmic fraction of LS and US cells stimulated with BMP2 (200 ng/ml), PDGF (10 ng/ml), or CCN2 (30 ng/ml) for 24 h in the presence of 10% FBS. In LS cells (left panel), these growth factors decreased the binding of the probe to the putative 40-kDa nuclear trans-factor. Furthermore, all of the growth factors abolished the binding of the probe to the cytoplasmic protein almost completely. On the contrary, in US cells (right panel), all of the growth factors increased the binding of the probe to the 40-kDa nuclear putative trans-factor protein. However, the growth factors had no effect on binding to the cytoplasmic protein, and thus no band was observed. Western blotting analysis (Fig. 9B) of fraction markers confirmed the quality and quantity of each protein fraction. Taken together, the observed differential effect of the growth factors on the binding profile between LS and US cells suggest that the regulatory system through binding of the cis-element of the 3'-UTR of ccn2 mRNA to the 40-kDa putative trans-factor protein might regulate the expression of ccn2 mRNA during differentiation of chondrocytes. In particular, this regulatory system might play an important role in chondrocyte differentiation through feedback regulation of the mRNA expression by autocrine CCN2 protein.
In the present study, we demonstrated that chicken ccn2 mRNA was expressed moderately in LS cells, in which the phenotypes of proliferating chondrocytes were expressed, and prominently in US cells, in which the phenotypes of prehypertrophic-hypertrophic chondrocytes were expressed (Fig. 1A). The results of the nuclear run-on assay (Fig. 1B) revealed that the transcriptional activity of the ccn2 gene was almost correlated with the mRNA level. Indeed, the stability of mRNA (Fig. 1C) of LS cells was the same as that of CEF cells (t = 1.0 h). However, importantly, in US cells, the mRNA was the most stable (t = 1.5 h), suggesting post-transcriptional regulation of mRNA stability in the ccn2 gene regulatory system. In cultured rabbit growth plate chondrocytes, ccn2 mRNA expression was also observed at a peak level at the hypertrophic stage (22). Furthermore, in situ hybridization revealed that its expression was predominant in hypertrophic chondrocytes of the mouse growth plate (22); and recombinant CCN2 protein stimulated the proliferation, proteoglycan synthesis, expression of type II and type X collagen genes, and alkaline phosphatase activity of rabbit growth plate chondrocytes (22, 34, 54). Therefore, these studies together suggest that regulation of the transcription activity producing ccn2 mRNA and that of its stability may control the proper growth and differentiation of chondrocytes during endochondral ossification. It has been reported that ccn2 mRNA was induced in various cells by various growth factors, such as BMP 2 (22), PDGF (28), and CCN2 itself (22). These growth factors have also been reported to play an important role in growth and differentiation of chondrocytes (811). Nonetheless, in the present study, the results of the nuclear run-on assay (Fig. 2A) demonstrated that 24-h stimulation with BMP2, PDGF, or CCN2 had little effect on the de novo synthesis of ccn2 mRNA in chicken chondrocytes. This is partly because the cells were exposed to the growth factors for only a short time (24 h) and 10% FBS was present in the medium. In the presence of FBS, which contains a variety of factors, some stimulatory and some inhibitory toward growth and differentiation, the response of de novo synthesis of ccn2 mRNA to the growth factors might have been masked. For drastic enhancement of de novo synthesis of ccn2 mRNA, continuous stimulation for a long period of time might be required as well. On the other hand, RNA degradation analysis (Fig. 2C) revealed that the growth factors did affect the stability of ccn2 mRNA. Of note, the response of the stability of ccn2 mRNA to the growth factors was different between LS and US cells. Namely, by stimulation with the growth factors, the stability of mRNA was increased in LS cells and decreased in US cells, showing the exact opposite effects between two different stages (proliferating stage versus prehypertrophic-hypertrophic stage) of chondrocytes. Therefore, we were led to hypothesize that the gene expression of ccn2 might be regulated by a bi-directional feedback loop, changing from positive to negative during chondrocyte differentiation. In this regard, although gene expression of ccn2 in vivo has been shown to be the highest in hypertrophic chondrocytes (3, 22), detailed observation revealed that the ccn2 expression during the differentiation of growth cartilage cells was the highest in early hypertrophic (non-calcified hypertrophic) chondrocytes and then decreased in chondrocytes in the calcified zone (22). In addition, an in vitro culture system of rabbit growth cartilage cells showed that the up-regulated expression of ccn2 in hypertrophic chondrocytes decreased as the cells differentiated during the calcifying stage (22). Therefore, it is feasible that growth factors that promote the terminal differentiation (calcification followed by apoptosis) of chondrocytes, such as BMP-2 (55) and CCN2 (3, 54), would down-regulate the expression level of ccn2 in the US cells, which mainly consist of prehypertrophic and hypertrophic chondrocytes. So far, there has been no report on the effect of PDGF on the terminal differentiation of growth plate chondrocytes, but it would be interesting to investigate the effect of this factor on hypertrophic chondrocytes, because they have been reported to be stainable with anti-PDGF antibodies (56). The physiological significance of the switch from positive to negative regulation is unknown. However, because forced overexpression of ccn2 has been shown to induce apoptosis of cells (57) and because the highest basal expression level was observed in the US cells (Fig. 1A), further stimulation by such factors may activate the negative feed-back loop of mRNA degradation to avoid overproduction of CCN2, which might cause early apoptosis before calcification. It is widely known that mRNAs of a number of genes contain cis-elements in their 3'-UTRs to regulate their protein expression, through export from nuclei to ribosomes (58) and stability (53). Of note, both mammalian and avian ccn2 mRNAs possess 1.1-kbp-long 3'-UTRs, which contain strong cis-acting elements that repress on gene expression (3841). Therefore, we sought to define the minimum cis-element in the 3'-UTR of chicken ccn2 mRNA by employing a transient expression and evaluation system with firefly luciferase fusion constructs. Thereby, we demonstrated that the element was located 100 bp upstream from the 3'-end of the mRNA and that the effect was orientation-dependent (Fig. 3). Importantly, the repressive effect of each potent fragment appeared weaker in CEF, moderate in LS, and more prominent in US cells. These findings suggest that the discrepancy in mRNA stability (Fig. 1C) between these cells might be the outcome of the negative regulation by the mRNA portion. Furthermore, RNA degradation analysis (Fig. 4) directly revealed that these fragments accelerated degradation of the reporter gene in cis and that the minimal fragment for repression of gene expression was required for the rapid RNA degradation. These results suggest that one or more cis-elements in the 3'-UTR of chicken ccn2 mRNA play an important role in the post-transcriptional regulation of ccn2 gene through RNA degradation. Indeed, nucleotide sequence analysis of this portion (Fig. 5) revealed that this region was highly AU-rich and contained AUUUA and AUUUA-like sequences, which have been regarded as mRNA-destabilizing cis-elements interacting with trans-factors in mammalian species (5962). Therefore, we regard the fragment "3'-100/50" as a major negative regulatory cis-element in the 3'-UTR of chicken ccn2 mRNA and consider it to be related to the destabilization of the mRNA. Previous studies in other laboratories (60, 63, 64) showed that such AU-rich RNA sequences are capable of forming a secondary structure and that a unique stem-loop or bulge of 3'-UTR is characteristic of the trans-factor binding site for post-transcriptional regulation. Furthermore, AU-rich elements in 3'-UTR of several proto-oncogenes, such as c-myc (59), hormones, such as parathyroid hormone (62), and cytokines, such as granulocyte-macrophage colony stimulation factor (65), have been recognized as signal targets for rapid degradation, which contributes, in part, to the rapid turnover of their mRNAs. As to chicken ccn2 mRNA, computer analysis predicted that the corresponding RNA portions of 3'-100(+) and 3'-100/50(+) were capable of forming stable secondary structures. RNA in vitro folding analysis (Fig. 6B) actually revealed that these RNA fragments formed secondary structures; however, no folded form was observed in the case of the 3'-50(+) RNA fragment. These results, taken together with those of the reporter gene assay, thus suggest that the stable self-folding of the portion "3'-100/50" may contain the regulatory center that interacts with a putative trans-factor, playing the role of a negative regulator of gene expression, probably acting as an RNA destabilizer in cis. Next, we investigated the putative trans-factor(s) that bound to the cis-element of the 3'-UTR of chicken ccn2 mRNA. REMSA (Fig. 7A) and UV cross-linking assay (Fig. 7B) revealed that 3'-100/50 fragment as well as 3'-100 fragment bound 40-kDa nuclear and cytoplasmic proteins of CEF cells. The competitor analysis of each experiment (Fig. 7, C and D) confirmed that the binding was probe-specific, suggesting the protein to be a putative trans-factor with the capacity to bind to the cis-element in the 3'-UTR of ccn2 mRNA. Hence, the 40-kDa protein that bound to the 3'-100 fragment is likely to be identical to the one that bound to the 3'-100/50 fragment. Further REMSA (Fig. 8A) and UV cross-linking assays (Fig. 8B) revealed the distinct patterns of binding of the putative trans-factor to the radiolabeled probes between LS and US cells. Namely, the binding profile of the nuclear and cytoplasmic proteins of LS cells was opposite to that of US cells. In particular, unlike in the case of CEF and LS cells, only very faint binding was detected by incubation with the cytoplasmic protein of US cells. Considering the fact that ccn2 mRNA was more stable in US cells than in CEF and LS cells (Fig. 1C), the 40-kDa putative trans-factor may destabilize ccn2 mRNA by interacting with cis-element in the 3'-UTR. Indeed, the prominent binding between the cis-element and the factor in LS cells might induce rapid degradation of ccn2 mRNA, and the decreased binding in US cells might contribute to the strong expression of ccn2 mRNA in them. It is also of note that the binding signal for the cytoplasmic putative trans-factor disappeared upon stimulation by the growth factors that extended the half-life of ccn2 mRNA in US cells (Fig. 9). These findings indicate that this regulated mRNA degradation is carried out mostly in the cytoplasm. A number of laboratories, including ours, have reported important physiological or pathological roles of CCN2, such as promotion of cell growth and differentiation in development (22, 34), angiogenesis (32), and wound healing (28). In addition, ccn2-overexpressing transgenic mice presented a dwarfism phenotype and decreased bone density (66), whereas ccn2-null mice showed skeletal dysmorphisms as a result of impaired chondrocyte proliferation (67), showing the critical importance of the strict regulation of CCN2 gene expression during endochondral ossification. Therefore, proper expression of ccn2 during the course of differentiation of chondrocytes in development should be regulated at a variety of stages, such as transcriptional, post-transcriptional, and translational. Indeed, previous studies of ours revealed that detectable expression of ccn2 mRNA was three-dimensionally highly restricted (22) and that the 1.1-kbp-long 3'-UTR contained cis-element that repressed gene expression (3841). However, the precise role of the cis-element during differentiation of chondroytes had remained unclear. In the present study, we first showed that the expression of chicken ccn2 mRNA was regulated not only at the transcriptional level, but also at the post-transcriptional level, and that the post-transcriptional regulation was based on the modulation of mRNA stability by the interaction between a cis-element in the 3'-UTR and a putative 40-kDa-trans-factor in the nuclei and cytoplasm. Moreover, we also demonstrated that this interaction was differentially regulated through the differentiation stages of chondrocytes. It is of particular interest to us to pursue the minimal cis-element in the 3'-UTR and to identify the putative trans-factor, to define better the post-transcriptional regulation system of ccn2. Further investigation is currently in progress.
* This work was supported by grants from the programs Grants-inaid for Scientific Research (S) (to M. T.) and (C) (to S. Kubota) and Grants-in-aid for Exploratory Research (to M. T.) from the Ministry of Education, Culture, Sports, Science, and Technology of Japan, and by grants from the Sumitomo Foundation (to M. T.) and the Nakatomi Foundation (to S. Kubota). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
This report is dedicated to the memory of Dr. Hitoshi Akedo. || To whom correspondence should be addressed. Tel.: 81-86-235-6645; Fax: 81-86-235-6649; E-mail: takigawa{at}md.okayama-u.ac.jp.
1 The abbreviations used are: TGF-
We thank Drs. Tohru Nakanishi, Takako Hattori, Takashi Nishida, Gen Yosimichi, Kumiko Nawachi, Norifumi H. Moritani, Masanao Minato, Tsuyoshi Yanagita, Kazumi Kawata, and Harumi Kawaki for helpful suggestions; Kazumi Ohyama and Toshihiro Ogawara for technical assistance; and Yuki Nonami for secretarial help.
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