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J. Biol. Chem., Vol. 280, Issue 52, 42938-42944, December 30, 2005
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1
1
¶2
From the
Molecular, Cell, and Developmental Biology Department, and the ¶Chemistry and Biochemistry Department, University of California, Santa Barbara, California 93106 and the
Department of Bioengineering, University of Utah, Salt Lake City, Utah 84112
Received for publication, August 2, 2005 , and in revised form, September 22, 2005.
| ABSTRACT |
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10) and exhibit Gly-rich peptide repeats. The consensus repeats in Pc-1 and -2 are VGGYGYGGKK (15 times), and HPAVXHKALGGYG (eight times), respectively, in which X denotes an intervening nonrepeated sequence and Y is modified to 3,4-dihydroxyphenyl-L-alanine (Dopa). The third protein, Pc-3, was deduced from the cement to be about 80 mol % phosphoserine/serine, and the cDNA was obtained by exploiting the presence of poly-serine repeats. Pc-3 consists of a family of at least seven variants with 6090 mol % serine most of which is phosphorylated in the cement. Pc-1, -2, and -3 contain cysteine some of which reacts to form 5-S-cysteinyl-Dopa cross-links during the setting process. | INTRODUCTION |
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Phragmatopoma cement consists of proteins and significant levels of phosphate, calcium, and magnesium (6, 7). Two of the cement proteins, Pc-1 and Pc-2,4 known from an earlier partial characterization (8), resemble the byssal adhesives of mussels (9) in that they are basic and contain 3,4-dihydroxyphenyl-L-alanine (Dopa) (5, 7, 8). Surprisingly, the abundant phosphate was not found to be associated with mineral but rather with serine residues in the cement (7). Indeed, the cement is dominated by phosphoserine and glycine, which together account for nearly 60 mol % of all the residues detected post-hydrolysis. Since the serine content of Pc-1 and -2 is negligible (8), the existence of a third serine-rich precursor is postulated.
The aim of the present research was to identify the serine-rich protein, to obtain full-length sequences of Pc-1 and Pc-2, and to gain some insights into the mechanism of cement solidification.
| MATERIALS AND METHODS |
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PCR and Preparation of cDNATotal RNA was extracted from the cement gland in the thorax of P. californica with RNase plant mini kit from Qiagen (Valencia, CA) according to the supplier's protocols. First strand cDNA was synthesized from total RNA using Superscript II reverse transcriptase with Adapter Primer, 5'-GGC CAC GCG TCG ACT AGT ACT (T)16 (Invitrogen), and used in subsequent PCR reactions. Based on specific amino acid sequences in Pc-1 and Pc-2 from a previous study (8) (i.e. VGGYGYGAK and WGHPAVHK, respectively), the 3'-ends of Pc-1 and Pc-2 were PCR amplified using 3'-rapid amplification of cDNA ends (3'-RACE) with degenerate oligonucleotides (sense Pc-1, 5'-GGN GGN TAY GGN TAY GGN GCN AA-3'; Pc-2, 5'-TGG GGN CAY CCN GCN GTN CAY AA-3') and an abridged universal amplification primer (antisense 5'-GGC CAC GCG TCG ACT AGT AC-3', Invitrogen). The PCR reaction was carried out in 25 µl of 1 x Buffer B (Fisher), 5 pmol of each primer, 5 µmol of each dNTP, 1 µl of the first strand reaction mixture, and 2.5 units of Taq polymerase (Fisher) for 32 cycles on a Robocycler (Stratagene). Each cycle consisted of 30 s at 94 °C, 30 s at 52 °C, and 1 min at 72 °C, with a final extension time of 5 min. The PCR products were subjected to 1% agarose gel electrophoresis followed by gel purification and cloned into a PCR TA vector (TOPO TA cloning kit, Invitrogen). Plasmids were transformed into competent Top10 cells for amplification, purification, and sequencing. The insert encoded the COOH-terminal sequence of Pc-1 and Pc-2, respectively, including the 3'-untranslated region.
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A cDNA library was constructed from the mRNA extracted from the cement gland in the thorax of P. californica using the CloneMinerTM cDNA library construction kit (Invitrogen) and adapted for serine-rich protein screening. Initial screening was done by PCR using a degenerate oligonucleotide corresponding to Ser5 (sense 5'-GAA TTC AGY AGY AGY AGY AG-3' with engineered EcoR I site) and a vector-specific universal primer, T7 5'-AATACGACTCACTATAG-3'. PCR conditions, cloning, and sequencing involved the same strategy outlined above are shown in the supplemental material. After obtaining the 3' sequences of Pc-3A and Pc-3B, nondegenerate gene-specific primers were designed to amplify the gene sequence with 5' RACE strategy. To ensure integrity of each cDNA, antisense primers (Pc-3A-reverse, 5'-C TCA ATG GCC TTG AAC CTA GAA TAC-3'; Pc-3B-reverse, 5'-ACA TAT AAG TCG TGT AAA TCT ATT TCT AAC-3') were designed within the 3'-untranslated region to amplify the full-length sequence. The PCR products were subcloned into a PCR TA vector and sequenced as described above.
In Situ HybridizationWorms were carefully removed from their tubes, anesthetized in 33% magnesium sulfate, then fixed, dehydrated, and embedded in methylmethacrylate (9:1 BMA with 1% benzoyl peroxide for thermal cure) as described in Warren et al. (10). Embedded tissue was microtomed into 2-µm-thick sections and acetone-de-embedded. Sections were then rehydrated, washed with diethylpyrocarbonate-treated Q-H2O, digested with proteinase (10 µg/ml proteinase K) for 4 min at 37 °C, acetylated with 0.1 M triethanolamine, 0.5% acetic anhydride for 3 min, and blocked with blocking solution (1 x Denhardt's solution, 5% dextran sulfate, 0.2 mg/ml sheared herring sperm DNA, 4 x SSC, and 50% formamide) for 2 h at 42°C. DIG-labeled oligonucleotide was then added to the blocking solution, and the tissue sections were hybridized overnight at 42 °C. The DIG-labeled oligonucleotide was prepared by DIG-PCR labeling kit (Roche Diagnostics) using primers sense 5'-ATGAAATCCTTCACTATTTTTGCC-3' and antisense 5'-AGAGCTGGAACTAGAGCTGTA-3'. Negative control reactions for later in situ hybridization included regular dUTP instead of DIG-labeled dUTP. Hybridization product was visualized by incubating the sections with anti-DIG-AP and subsequently adding color substrates nitro blue tetrazolium/5-bromo-4-chloro-3-indolyl phosphate as described by the supplier (Roche Diagnostics) and viewed by light microscopy. Parallel whole worms were stained for Pc-1 and -2 using the Arnow reaction (11).
Cement AnalysisFor routine analysis, cement proteins were hydrolyzed in 6 M HCl and 5% phenol in vacuo for 24 h at 110 °C. Phosphoserine losses were corrected by extrapolation of hydrolysis to zero time (7). Hydrolysates were flash evaporated to dryness at 50 °C and subjected to amino acid analysis on a Beckman 6300 Autoanalyzer using an 85-min elution program for post-translationally modified amino acids (12). Cysteine was detected as carboxymethylcysteine following reduction by dithiothreitol and alkylation with iodoacetate as previously described (13), and phosphoserine was detected as such at 2.7 min (7). For cross-link analysis, worm cement proteins on sand grains were hydrolyzed for 12 h at conditions otherwise described above. Dopa and cysteinyldopa were purified from flash evaporated cement hydrolysates using phenyl boronate affinity chromatography (Affi-Gel 601 Boronate, Bio-Rad). Hydrolysate residues resuspended in 100 mM sodium phosphate buffer (pH 7.5) were applied to the boronate column (14). Bound ligands were washed with 10 column volumes of phosphate buffer, followed by 10 column volumes of 2.5 mM NH4HCO3 and 10 column volumes of deionized distilled water. Fractions eluted with 5% acetic acid were freeze-dried and subjected to amino acid analysis (12) and electrospray ionization mass spectrometry (Micromass QTOF2 tandem mass spectrometer) using a syringe pump to inject samples at a rate of 5 µl/min. All sample analyses were compared with authentic 2-S-cysteinyl-Dopa and 5-S-cysteinyl-Dopa.
| RESULTS |
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With respect to Pc-2, only one variant (21 kDa) was found. This also contains degenerate copies of a consensus repeat, HPAVHKALGGYG, but with considerable variety in connecting and flanking sequences (Fig. 1B). Again, most of the tyrosine is converted to Dopa in the mature protein (8). While the high level of glycine was consistent with the compositional bias of the cement, Pc-1 and -2 are deficient in the other most abundant amino acid of cement, namely serine and/or phosphoserine, thus suggesting another precursor with a strong compositional bias (TABLE ONE).
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Attempts to extract a protein with
80 mol % phosphoserine (Pc-3) directly from the cement gland or from cement deposited by captive worms on acid washed sand remain inconclusive. Possible reasons for this include the insolubility of cement (phosphoserine is associated with the insoluble fractions) and also that phosphoserine-rich proteins are notoriously difficult to stain following polyacrylamide gel electrophoresis (18). In planning a molecular strategy for deducing sequence of Pc-3s, the following two points were exploited: 1) at 80 mol % serine, the probability of at least one stretch of five consecutive serines must be high, and 2) the codon preference for serine in Pc1 and -2 was AGT/C. Combining the two points, primers based on (AGT/C)4AG coupled with sequence from the 3'-untranslated region sufficed after RACE to discover the Pc3 sequences (Fig. 1C). The runs of uninterrupted serines range from Ser4 to Ser13 in length. Following further screens of cement gland cDNA with primers based on the serine rich domains, two types of putative Pc-3 variants emerged: Pc-3A variants are between 50 and 60 mol % serine and contain a highly basic carboxyl terminus with six cysteines. In contrast, the Pc-3B variants lack the basic amino acids at the carboxyl terminus and have serine levels approaching 90 mol %. Calculated masses range from 10 to 30 kDa, with an expected increase of 525 kDa due to phosphorylation alone. The average mol % for Ser (/Ser(P)) for all seven variants was about 73 mol % (Pc-3, TABLE ONE), which compares reasonably well with the 80 mol % predicted from the cement analysis. Calculated pI values of fully phosphorylated Pc-3s would range from 0.5 to 1.5, which would place them among the most acidic proteins known.
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Two intriguing features of the deduced sequences shown in Fig. 1 are the persistent cysteine content (range: 13.5%) with a cement average of a little over 2 mol % and a tyrosine content of 10 mol %. Analysis by energy dispersive x-ray spectroscopy showed the cement to be moderately endowed with sulfur (Fig. 3F), and acid hydrolyzed cement subjected to amino acid analysis contained cystine at 0.4 residue/100 residues (TABLE ONE). The latter, however, is less than half the expected level in terms of cysteine. To further explore the fate of cysteine, cement deposited by the worms onto acid-washed sand was collected and subjected to iodoacetate alkylation with or without prior reduction by dithiothreitol. No carboxymethylcysteine could be detected without prior reduction. With reduction, the detected carboxymethylcysteine (0.91 + 0.18 mol %, n = 3) was comparable with the cystine (0.44 + 0.16 mol %, n = 3) found in unreduced hydrolyzed samples.
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A 5-S-cysteinyl-Dopa cross-link density of one per 100 amino acids was estimated from the amino acid analysis. Given the known tendency of cysteinyl-Dopa to reoxidize and undergo additional nucleophilic additions (22), this density must be considered an absolute minimum.
| DISCUSSION |
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Of the cement proteins, Pc-3 is most unlike other known adhesive precursors. Few proteins or domains exhibit the compositional serine/phosphoserine bias of Pc-3 especially Pc3B which exceeds 90 mol % Ser. Chick phosvitin has a phosphoserine rich domain that contains several runs of serine as long as 14 residues (25). Phosphophoryns, matrix proteins from tooth dentin with the consensus sequence (DpSpS)n, are another example (26, 27). Both of these are involved in binding to Ca2+ ions and amorphous calcium phosphate and/or hydroxyapatite.
The successful sand masonry of P. californica is likely to be largely determined by the adhesive properties of its cement and the manner of its dispensation. Four conditions are widely considered to be prerequisites for effective practical adhesion: 1) the absence of weak boundary layers, 2) good spreading of the adhesive over the surface, 3) formation of extensive interfacial interactions, and 4) uniform setting or curing of the adhesive (28). Because these prerequisites were not formulated for underwater conditions, a further prerequisite is necessary and that is delivery of the cement/adhesive as a fluid that is nondispersible by the seawater medium. This will be considered first.
Pc-1, -2, and -3 are water-soluble polyelectrolyte solutes, thus secreting them together or sequentially would risk loss by dilution to the surrounding seawater. To overcome this problem, Stewart et al. (7) proposed a model based on complex coacervation. Complex coacervation refers to a liquid:liquid phase separation that occurs when polycations such as basic proteins are mixed with polyanions such as acidic proteins at a pH where there is charge equivalence (29, 30). When equivalence occurs in a symmetrical mixture of polyelectrolytes with similar charge density, molecular weight, and flexibility, a denser concentrated phase (coacervate) separates from the more dilute equilibrium phase. Coacervates have unusual properties that would seem to be able to satisfy prerequisites 1 and 2, that is, removing weak boundary layers and exhibiting good or spontaneous spreading. Coacervate proteins, by virtue of being more desolvated than noncoacervated proteins (31), may be able to absorb water from wet surfaces. In addition, given the low interfacial tension between the coacervate and equilibrium solution phases, coacervates tend to spread readily over most surfaces (29).
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With regard to the third prerequisite of adhesion, given the high polarities of Pc proteins, extensive electrostatic and van der Waals interactions with the surface of the substratum are inevitable but their interaction strength would be diminished by the high dielectric constant of seawater. Pc proteins, however, are also capable of interfacial contacts that are independent of the dielectric constant of seawater. These are most notably the interaction of Dopa with surface oxides, which results in a coordinate bond (34), and the interaction of phosphoserines with minerals such as iron oxides and apatite to form insoluble ionic bonds (35).
Curing results from the formation of intermolecular cross-bridges (fourth prerequisite) in the adhesive. If future studies determine that the cysteinyldopa cross-links in cement are intermolecular, then this would fulfill the setting requirement. In mussel byssal adhesive plaques, di-Dopa cross-links prevail (15), but whether they also occur in Phragmatopoma cement is not known. A role for phosphoserines in setting is suggested by the high levels of Mg/Ca2+ in the cement and cement gland (6, 7, 33) and cement softening by EDTA treatment.5 Indeed, Ca/Mg2+ interactions with phosphates represent an excellent pH triggered type of setting. At low pH the interaction would be largely electrostatic, whereas at pH 8, given the Ksp (calcium phosphate) = 2.02 x 1033, it would become ionic and precipitate (36).
Fig. 5 proposes the key steps in Phragmatopoma cement formation. Some or all cement precursors are stockpiled together with Mg/Ca as multiphase coacervates in secretory cell granules of the cement gland. The granule coacervate contents are released onto the surface of a sand grain where they coalesce and spread. Because the interactions between Mg/Ca2+ and phosphate groups are less soluble at seawater pH, the cement becomes less fluid and more gel-like. Finally, Dopa residues not coordinated at the interface oxidize to Dopaquinones that react with cysteines to form irreversible cysteinyldopa cross-links.
We know of no other instance in which coacervation is exploited in adhesion. The setting by Ca2+, however, shares a striking parallel with a common commercial glue (e.g. Elmer's White GlueTM), which consists of a phosphoprotein (casein) that can be rendered water-resistant by the addition of lime (Ca(OH)2) at alkaline pH (2). The adhesive advantages gained by Phragmatopoma cement in having an order of magnitude more phosphate groups than casein and a significant inclusion of polycations with Dopa groups (Pc-1 and -2) remain to be explored.
| FOOTNOTES |
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The on-line version of this article (available at http://www.jbc.org) contains supplemental sequence material. ![]()
1 These authors contributed equally to this work. ![]()
2 To whom correspondence should be addressed: Marine Science Inst., University of California, Santa Barbara, CA 93106. Tel.: 805-893-2817; Fax: 805-893-7998; E-mail: waite{at}lifesci.ucsb.edu.
3 R. J. Stewart, personal communication. ![]()
4 The abbreviations used are: Pc, Phragmatopoma cement protein; DIG, digoxigenin; ESI, electrospray ionization; ms/ms, tandem mass spectrometry; RACE, rapid amplification of cDNA ends; Dopa, 3,4-dihydroxyphenyl-L-alanine. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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