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J. Biol. Chem., Vol. 280, Issue 6, 4834-4841, February 11, 2005
Identification of FGF10 Targets in the Embryonic Lung Epithelium during Bud Morphogenesis*![]() From the Pulmonary Center, Boston University School of Medicine, Boston, Massachusetts 02118
Received for publication, September 16, 2004 , and in revised form, November 16, 2004.
Genetic studies implicate Fgf10-Fgfr2 signaling as a critical regulator of bud morphogenesis in the embryo. However, little is known about the transcriptional targets of Fgf10 during this process. Here we identified global changes in gene expression in lung epithelial explants undergoing FGF10-mediated budding in the absence of other growth factors and mesenchyme. Targets were confirmed by their localization at sites where endogenous Fgf10 signaling is active in embryonic lungs and by demonstrating their induction in intact lungs in response to local application of FGF10 protein. We show that the initial stages of budding are characterized by marked up-regulation of genes associated with cell rearrangement and cell migration, inflammatory process, and lipid metabolism but not cell proliferation. We also found that some genes implicated in tumor invasion and metastatic behavior are epithelial targets of Fgf10 in the lung and other developing organs that depend on Fgf10-Fgfr2 signaling to properly form. Our approach identifies Fgf10 targets that are common to multiple biological processes and provides insights into potential mechanisms by which Fgf signaling regulates epithelial cell behavior.
Signaling by fibroblast growth factor 10 (Fgf10)1 and its receptor Fgfr2b is critical for bud morphogenesis in many developing structures. During organogenesis, Fgf10 is expressed by the mesoderm from where it diffuses to activate Fgfr2b in adjacent endodermal or ectodermal-derived cells and induce budding (1). Disruption of Fgf10-Fgfr2b signaling is lethal at birth and results in multiple organ defects. Abnormalities in Fgf10- or Fgfr2b-deficient mice include agenesis of the anterior pituitary gland, lung, thyroid, salivary gland, and limb and dysgenesis of inner ear, teeth, skin, pancreas, kidney, palate, and hair follicles (25). Fgf10 expression is also required for adipocyte differentiation and wound healing (68).
In the developing respiratory tract of the mouse, Fgf10 is first detected at embryonic (E) day 9.5 during primary bud formation. Subsequently, during branching morphogenesis (E10.516.5), Fgf10 is dynamically expressed in the distal lung mesenchyme at the prospective sites of budding (9, 10). The spatial and temporal distribution of Fgf10 is essential for patterning of lung epithelial tubules. Bud morphogenesis involves major changes in cytoskeletal organization, cell adhesion, migration, invasion, and proliferation among other activities. Little is known about the targets of Fgf10-Fgfr2b signaling in the lung epithelium when buds are forming. Although gene expression in the developing lung has been characterized by several reports, most studies were performed in the intact organ. Using whole lungs to identify targets that result primarily from Fgf10-Fgfr2b activation is difficult, because in the mesoderm, Fgf10 is present with several other endogenous signals such as Wnts, hepatocyte growth factor, or epidermal growth factor. Previous studies have shown that recombinant FGF10 is able to support bud morphogenesis of E11.5 lung epithelial explants in Matrigel in the absence of mesenchyme or serum (10). Here we used mesenchyme-free epithelial cultures to investigate global changes in gene expression induced by FGF10 during the initiation of budding. Our approach identifies a large number of genes not previously known to be present in the lung epithelium during bud morphogenesis or responsive to FGF10. Among them were genes associated with cell rearrangement and cell migration, inflammatory processes, lipid metabolism, and tumor invasion. Our data provide insights into potential mechanisms by which Fgf10-Fgfr2b orchestrates bud morphogenesis in the lung and presumably in other organs.
Mesenchyme-free Epithelial CulturesLung epithelial explants from E11.5 CD-1 mice (Charles River Laboratories) were isolated from the surrounding mesenchyme after Dispase digestion (37 °C for 15 min, Roche Applied Science), embedded in growth factor-reduced Matrigel (R&D Systems), and cultured in serum-free Dulbecco's modified Eagle's medium (Invitrogen) supplemented with 2500 ng/ml human recombinant FGF10 (R&D Systems) as described (Fig. 1A) (10). Cultures were harvested after 8 or 24 h for isolation of total RNA.
Whole Lung Organ CulturesE11.5 intact lungs were cultured in BGjb medium (Invitrogen, 20 mg/100 ml ascorbic acid, 1% inactivated fetal calf serum), as described previously (10). For some cultures, heparin beads soaked in either buffer (PBS) or FGF10 (100 ng/µl, R&D Systems) were engrafted near distal buds. Cultures were harvested at 48 or 72 h, fixed in 4% paraformaldehyde, and processed for paraffin embedding or whole mount in situ hybridization. RNA Isolation, Amplification, Microarray Hybridization, and AnalysisTotal RNA was isolated from mesenchyme-free lung epithelial explants at 0, 8, and 24 h using RNeasy kit (Qiagen). RNA was submitted to one-round amplification (Ribo Amp RNA amplification kit, Arcturus), labeled, and hybridized to chips using the Affymetrix kit according to manufacturer's instructions. Two sets of arrays (Affymetrix, MG-U74v2 set) were hybridized per sample at each time point. The background signal for each array was <100 within the recommendation limit. Preferential amplification of 3'-gene regions was observed in all of the samples; glyceraldehyde-3-phosphate dehydrogenase 3'/5' ratio ranged from 14 to 19 (over a 4.0-fold recommendation limit). Affymetrix Microarray Suite, version 5.0 was used with a global scaling factor of 500 to acquire the target intensity. The scaling factors used to normalize the target value were within 4-folds of each other for all comparisons (range from 0.51 to 2.16). Genes for which detection p value was greater than 0.01 (absent call) in all six samples were discarded. Fold changes and p values were determined for three comparisons: 08; 824; and 024 h. The Gene Cluster (the laboratory of Michael Eisen) and EASE (SAIC-Frederick, Inc.) software were used to group genes with similar trends in expression and to find representation of GO categories, respectively. In Situ HybridizationWhole mount in situ hybridization of freshly isolated E11.5 lungs or lung cultures was performed in 96-well plates as described previously (11). Isotopic in situ hybridization was performed as described previously (12). Some cDNA clones used for probe labeling were obtained from NIA Mouse 15K cDNA clone set (Tufts University School of Medicine). The GenBankTM accession numbers were: Perp (BG078591 [GenBank] ); Catnb (BG065470 [GenBank] ); Tm4sf3 (BG065758 [GenBank] ); Lmo7 (BG066247 [GenBank] ); Tacstd2 (BG066797 [GenBank] ); Tgtp (BG067921 [GenBank] ); Porimin (BG074161 [GenBank] ); and Lrpap1 (BG075378 [GenBank] ). Others were generated by PCR using GenBankTM sequences as described previously (13) as follows: Anxa1 5' primer, 5'-AATTAACCCTCACTAAAGGTTGAGAAGTGCCTCACAACCA-3'; Anxa1 3' primer, 5'-TAATACGACTCACTATAGGAGACTTATCTGCCAAAGCAAC-3'; Anxa3 5' primer, 5'-AATTAACCCTCACTAAAGGATCTTTCACCTTCGCTGAGCT-3'; Anxa3 3' primer, 5'-TAATACGACTCACTATAGGTTTCTTCAGTTCGTTCGCATC-3'; Timp3 5' primer, 5'-AATTAACCCTCACTAAAGGGGCATGTATACACCTCTTCTT-3'; Timp3 3' primer, 5'-TAATACGACTCACTATAGGCACTCCTACAGTCTGTCTCTT-3'; Bmpr1a 5' primer, 5'-AATTAACCCTCACTAAAGGCGTGAGGTTGTGTGTGTGAAA-3'; Bmpr1a 3' primer, 5'-TAATACGACTCACTATAGGACTGTTAGCAGCCTGTGAAGA-3'; Saa3 5' primer, 5'-AATTAACCCTCACTAAAGGGGAAGCCTTCCATTGCCATCAT-3'; Saa3 3' primer, 5'-TAATACGACTCACTATAGGGGGGATGTTTAGGGATCCAGAT-3'; Vnn1 5' primer, 5'-AATTAACCCTCACTAAAGGGTCTGAGAAGCGAGCAGATGA-3'; Vnn1 3' primer. 5'-TAATACGACTCACTATAGGGTTCCCATACAACCTCCCAAA-3'; Myh7 5' primer, 5'-AATTAACCCTCACTAAAGGGGAAGAACATGGAGCAGACCAT-3'; and Myh7 3' primer, 5'-TAATACGACTCACTATAGGGAGCACAAGATCTACTCCTCAT-3'.
Global Trends in Gene Expression in FGF10-treated Epithelial Cultures We assessed gene expression in the lung epithelium during the initial stages of bud formation in vitro without intervening signals from the mesenchyme and having FGF10 as the sole growth factor in the medium. Within the initial 8 h in culture (pre-budding stage), the epithelial tube seals, presumably by a mechanism reminiscent of wound healing. By 24 h, a first generation of buds becomes evident (onset budding) (Fig. 1B). Subsequent stages (48 h, not studied here) are characterized by bud elongation and by the appearance of a second generation of buds. Fgfr2b was expressed at all times, The explants were unable to survive without exogenous FGF10 (Matrigel alone). 219 genes were selected for further analysis based on the following criteria: fold changes equal or over 3.0 with a p value <0.05 in at least one of the comparisons. Representative genes are shown in Table I. Four major clusters of regulated genes were defined based on how their levels of expression changed in time (Fig. 1C).
Cluster ACluster A consisted of 68 genes (31% of the 219 selected) with a steady increase in expression levels from 0 to 24 h in culture. This trend correlated positively with the increasing budding activity of the cultured epithelium. Genes implicated in signal transduction, cell motility, inflammation-repair responses, and genes associated with cellular membranes were overrepresented (Table II). They were probably FGF10 targets induced to promote healing of the explants and to initiate bud formation.
Cluster BCluster B comprised 13 genes ( 6%) whose expression declined in culture from 0 to 24 h. Gene categories related to transcription and oxidoreductase activity were overrepresented (Table II). The expression of these genes may have been repressed by FGF10 or, alternatively, could not be maintained in culture without other mesenchymal signals. For example, in the intact E11.5 lung, Rex3 (repressed by retinoic acid 3) was known to be strongly expressed in the distal epithelium (13) where Fgf10 signaling is active. However, in our cultures, Rex3 was clearly down-regulated despite the presence of exogenous FGF10. Cluster CCluster C included 31 genes (14%) up-regulated within the initial 8 h and subsequently down-regulated or without further change in levels from 8 to 24 h. This cluster was overrepresented in genes involved in mitotic cell cycle and steroid and lipid metabolism. Among them were the well characterized stress-induced genes Nupr1 (nuclear protein 1 or p8), Ache (acetylcholinesterase), Hspa1b (heat shock protein 1B), and Procr (protein C receptor, endothelial). The remarkable transient up-regulation of Nupr observed during the initial 8 h in culture (32-fold) may, at least in part, represent a response of the explant to the dramatic changes in the environment (14). Cluster DCluster D comprised 107 genes (49%) whose expression declined during the initial 8 h, but returned to normal levels by 24 h in culture. Cluster D was overrepresented in gene categories related to nucleotide biosynthesis, ATP binding, metabolism and biosynthesis, DNA repair, M-phase mitosis, and cysteine-type endopeptidase activity. Expression of these genes may have been initially affected by environmental factors, but it recovered subsequently. In situ hybridization analysis of E11.5 lungs confirmed epithelial expression of 22 of 26 uncharacterized genes. Most showed increased signals in distal epithelium where endogenous Fgf10 is active (Fig. 2, Group I). Nine genes were additionally expressed in distal mesenchyme (Fig. 2, Group II). Inducibility by FGF10 was confirmed for 16 of 20 genes by detection of strong signals in the epithelium associated with beads loaded with FGF10 engrafted in whole lung cultures (Figs. 3 and 4, EG and PR).
Known Signaling Pathways Influenced by Fgf10 during Bud Morphogenesis Activation of Fgf10-Fgr2b signaling has been shown to influence the expression of other Fgfs, Bmps, Wnt- -catenin, and Shh (Sonic hedgehog) in a variety of developing structures. We found that within the initial 24 h of budding, only two components of these pathways (Bmpr1a and Catnb) were clearly up-regulated by FGF10. Bmpr1a, which encodes type I receptor for BMP, showed an 11-fold increase in expression (024 h). Bmp4 is a well known target of Fgf10 in branching epithelial tubules where it is believed to control Fgf-mediated bud outgrowth. Studies in lung explant culture systems demonstrate that FGF10 induction of Bmp4 is evident only by 48 h of treatment (15, 16). Consistent with this finding, we could not detect significant changes in Bmp4 levels within the 024-h period. However, its receptor was markedly up-regulated by 24 h (Table I). Figs. 2G and 3A show Bmpr1a expression in the distal lung epithelium and its up-regulation by local FGF10. Sequential induction of Bmpr1a and Bmp4 by FGF10 probably underlies a mechanism by which Bmp signaling is established in the lung bud to limit the FGF10 effects. Hence, FGF10 initially induced the expression of Bmpr in the nascent bud to make it competent to respond to a BMP signal that would be induced in a subsequent step.
FGF10 Induces Genes That Regulate Cell Polarity, Adhesion, and Directed Cell Migration
Other genes involved in cell-cell or cell-substrate adhesion significantly up-regulated were as follows: Lmo7 (LIM domain 7) (14-fold, Fig. 2L), an afadin- and
An unexpected finding was Myh7 (myosin, heavy polypeptide-7,
FGF10 Induces Genes Associated with Inflammatory Responses during Bud Induction Fig. 3, C and D, show that epithelial expression of Annexin genes is dramatically increased by local application of FGF10 protein. By contrast, an analysis of E11.5 lungs showed that distal-proximal gradients of these genes are subtle (Anxa3) or not obvious (Anxa1) (Fig. 2, D and J) and do not correlate well with the distal gradients of Fgf10-Fgfr2b activity reported in the lung. This finding indicates that endogenous levels of Fgf10 have only a modest impact on Annexin gene expression. The striking up-regulation of Annexins in our system appears to represent a feedback response of the epithelium to supraphysiological levels of FGF10. Presumably, this mechanism operates in the developing lung to restrict Fgf signaling in conditions in which the Fgf pathway has been hyperactivated by transient increases in ligand production. Indeed, Annexins are potent inhibitors of phospholipase A2 (34), a substrate of activated Fgfr kinase that has been implicated in inflammatory and morphogenetic processes (35).
Other genes associated with inflammatory responses or wound healing up-regulated in our array were: Tgtp (T-cell-specific GTPase, 59.6-fold, Fig. 2A), S100a13 (S100 calcium-binding protein A13, 3.2-fold, Table I), the acute phase response gene Saa3 (serum amyloid A3, 35-fold, Fig. 2K) and its receptor Ager (advanced glycosylation end product-specific receptor, 35-fold, Table I), and Il10rb (interleukin 10 receptor
FGF10 Induces Steroid and Lipid Metabolism-related Genes during Epithelial Morphogenesis in Vitro Six genes from cluster C, associated with steroid-lipid metabolism, showed a similar pattern of induction by FGF10 (Ldlr, Hsd3b2, Lss, HSL, Cyp51, and Scd1 in Table I). At least two of them are known FGF targets involved in lipid synthesis in cell lines. For example, FGF2 (basic FGF) up-regulates Ldlr (low density lipoprotein receptor) in arterial smooth muscle cells to increase LDL uptake (37). The time course of Ldr induction in these cells is similar to that found in our cultures (initial peak at 68 h and return to initial levels). FGF7 markedly induces the expression of Scd1 (stearoyl-coenzyme A desaturase 1) to stimulate surfactant phospholipid synthesis in rat lung type II cells (36). Scd1 encodes an enzyme required for normal synthesis of triglycerides, cholesterol, and phospholipids (36), which was induced by 4-fold (024 h) by FGF10 in our cultures.
In the white adipose tissue, C/EBP Two genes from cluster A associated with lipid metabolism were highly expressed in distal epithelium and responsive to FGF10 in our cultures. They were as follows: Lrpap1 (HBP44, low density lipoprotein receptor-related protein-associated 1, 024 h, 5-fold; Figs. 2M and 3F) and Cyp1b1 (cytochrome P450, family 1, subfamily B, polypeptide 1, 024 h, 15-fold; Figs. 2N and 3E) (40).
Also markedly up-regulated by FGF10 were two genes that have been indirectly implicated in signal transduction via phospholipase C
FGF10 Regulation of Genes Associated with Cell Proliferation, Cell Death, and Proteolysis Changes in expression of apoptosis-related genes were unremarkable, in agreement with the overall health status of these cultures and the role of Fgf10 as a survival factor for the developing epithelium. Of interest was the up-regulation of Porimin (3.6-fold), a gene encoding a membrane mucin that mediates oncosis, a recently described non-apoptotic mechanism of cell death in cell lines (44). Fig. 2O shows Porimin expression in the E11.5 distal lung. Two p53-related genes, Perp-pending (P53 apoptosis effector related to Pmp22) and Prkdc (protein kinase DNA-activated catalytic polypeptide), implicated in DNA repair were expressed at high levels in our system (13- and 10-fold by 24 h, respectively, Table I). We identified two genes associated with proteolysis, Ctsh (cathepsin H) and Timp3 (tissue inhibitor of metalloproteinase 3) in distal epithelial buds that were highly induced by FGF10 (35- and 9.3-fold over 24 h, respectively) (Table I and Figs. 2E and 3B and data not shown). Ctsh encoded a lysosomal glycoprotein member of the cysteine proteinase family whose function in organogenesis is still unclear (45). The reduced branching activity reported in Timp3 null mice suggests a genetic interaction between Timp3 and Fgf10 in the developing lung (46). Up-regulation of Timp3 in our system raises the possibility that one of the functions of FGF10 is to balance metalloproteinase activity in nascent buds.
FGF10 Targets Are Induced in Multiple Developing Organs and in Different Biological Processes In situ hybridization analysis of Tacstd2 in embryos at different stages (E1114) showed strong signals in putative epithelial cell progenitors of various Fgf10-dependent structures, such as the lung, tooth, hair follicle, skin, renal tubules, ureteric bud, and urogenital sinus (future bladder) (Figs. 2B and 4, AD). A similar analysis revealedTm4sf3 signals in the epithelium of thyroid, lung, stomach, gut, renal tubules, bladder, and tooth. (Fig. 4, IL). Fig. 4H shows an anterior-posterior gradient of Tm4sf3 in the E12 stomach remarkably similar to that described for Fgf10 in the corresponding mesenchyme (48). All of the structures above where these genes were expressed are known to be dramatically altered in Fgf10 or Fgfr2b knock-out mice (5). The presence of Tm4sf3 expression in the liver and cartilage primordia of bones (Fig. 4, I, N, and O), structures not reported to be abnormal in these mutant mice (5), suggests an Fgf10-independent regulation of Tm4sf3 at these sites. Our data suggested that Tacstd2 has a more specific requirement for Fgf10 than does Tm4sf3. The assessment of these genes in whole lung cultures engrafted with FGF-loaded beads showed that Tm4sf3 is equally up-regulated by FGF10 or FGF7. However, Tacstd2 responded only to FGF10 (Fig. 4, EG and PR). This is intriguing, because these FGFs utilize the same receptor for signaling (49).
It is long believed that organogenesis and tumorigenesis share common features and regulatory pathways. Interestingly, Tacstd2 and Tm4sf3 have been recognized as tumor antigens and are associated with tumor invasion and metastatic behavior. Tacstd2 has been reported in tumors of various origins, including prostate and mammary gland (50). Increased levels of Tm4sf3 have been reported in several metastatic carcinomas (5153). Tm4sf3 regulates cell migration by modulating integrin compartmentalization and signaling. Tm4sf3 co-expression with
Summary and Concluding Remarks Genetic data indicate that during organogenesis Fgf10-Fgf2b signaling is required for bud formation in multiple developing structures (35). Thus, the Fgf targets identified in our screen are likely to be relevant for budding in other organs. The confirmation of selected genes in various structures that depend on Fgf10-Fgfr2 to develop favors this hypothesis. A number of studies support a role for Fgf10 in maintaining a progenitor-like state of a population of epithelial cells during organ development (20, 5557). Here we were unable to clearly identify a subset of Fgf10 target genes characteristic of this state. This reflects some of the current difficulties in defining the markers for these progenitor cells. Perhaps the target genes, such as Tactds2 and Tm4sf1, present in relatively undifferentiated epithelial cells during both development and cancer are representative of these markers.
* This work was supported by Grant (PO1) HL47049 from the NHLBI, National Institutes of Health. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
1 The abbreviations used are: Fgf or FGF, fibroblast growth factor; fgfr, fgf receptor; E, embryonic day; C/EBP
We thank Lan Wei in the Microarray Core Facility of Tufts University for providing us with the cDNA clones and PCR products. We thank Jan Blusztajn and Stephen Farmer for helpful discussion. We are also grateful to Xiaoqian Qi and Chun Li for technical assistance.
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