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J. Biol. Chem., Vol. 281, Issue 10, 6632-6641, March 10, 2006
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¶
1
From the
Kennedy Krieger Institute and
Department of Neurology and ¶The Institute for Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205
Received for publication, October 25, 2005 , and in revised form, December 13, 2005.
| ABSTRACT |
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9) and linoleic acid (C18:2
6) but not other fatty acid substrates tested. Within a highly conserved motif known to be important for catalysis, human ACSBG2 contains a histidine residue where all other known acyl-CoA synthetases, including mouse and rat ACSBG2, contain an arginine. This substitution resulted in a shift of the human ACSBG2 pH optimum to a more acidic pH. Mutation of this histidine to arginine improved catalytic function at neutral pH by shifting the pH profile without affecting substrate specificity. Although the role of ACSBG2 in testicular and neuronal lipid metabolism remains unclear, the limited tissue expression pattern and limited substrate specificity rule out a likely role for this enzyme in X-linked adrenoleukodystrophy pathology. | INTRODUCTION |
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-oxidation. All ACSs are thought to utilize the same ATP-dependent reaction mechanism, in which the fatty acid is first adenylated with release of inorganic pyrophosphate. In the second step of the reaction, CoA-SH displaces AMP by forming a thioester linkage with the fatty acyl group (1). Thus, all ACSs are thought to contain a highly conserved amino acid sequence referred to at the AMP-binding domain (PROSITE PDOC00427, available at au.expasy.org/cgi-bin/nicedoc.pl?PDOC00427). We (2) and others (3) identified a second highly conserved region in the amino acid sequences of known ACSs. Bioinformatics approaches, using amino acid and nucleotide sequences derived from the various genome sequencing projects, have allowed us to estimate that mammals, including humans, have at least 25 distinct enzymes that are documented or putative ACSs.3
In the Drosophila mutant "bubblegum" (4), the defective gene product, ACSBG1,4,5 was found to be an ACS (2, 5). Several properties of ACSBG1 suggest that it may be involved in the biochemical pathology of X-linked adrenoleukodystrophy (X-ALD). Patients with X-ALD (6), as well as male fruit flies lacking ACSBG1 (4), have neurodegeneration and elevated tissues levels of saturated very long-chain fatty acids. In mice, ACSBG1 is highly expressed in the brain (hippocampal and hypothalamic neurons and cerebellar Purkinje cells), adrenal cortex (zona fasciculata), and testis (Leydig cells) (5). These tissues are the primary sites of pathology in X-ALD (2, 7). When expressed in COS-1 cells, ACSBG1 has robust acyl-CoA synthetase activity and is capable of activating long- and very long-chain saturated, monounsaturated, and polyunsaturated fatty acids (2, 5). However, a direct role for ACSBG1 in X-ALD pathology has not yet been demonstrated (8, 9). Therefore, it was of interest to determine whether ACS enzymes related to ACSBG1 existed, and if so, whether they were involved in X-ALD biochemical pathology.
Examination of the ACSBG1 amino acid sequence revealed that it contained both the AMP-binding domain and the second conserved ACS sequence (motif 2) described above (2). Sequence homology within motif 2 can be used to group related proteins into families3 (2). However, the ACSBG1 motif 2 sequence differed sufficiently from motif 2 sequences of known short-, medium-, long-, and very long-chain ACSs, thus we concluded that ACSBG1 belonged to a distinct ACS family (2). Homology probing of the National Center for Biotechnology Information (NCBI) protein and nucleotide databases revealed that the ACS gene/protein family of humans, mice, and fruit flies to which ACSBG1 belongs each has only one other member. This "bubblegum-related" gene (ACSBG2) encodes a protein that is an ACS with a very restricted tissue and cellular expression pattern. Furthermore, the native human protein has a naturally occurring mutation at a highly conserved position that affects its enzymatic function. We describe here some of the properties of human and mouse ACSBG2.
| EXPERIMENTAL PROCEDURES |
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Animals and Their CareWild-type 129SvEv mice were obtained from Taconic, Inc. (Germantown, NY). All mice used in these studies were approximately 3 months of age. Mice were housed in facilities of the Johns Hopkins University School of Medicine under controlled conditions, between 22 °C and 27 °C, on a 12-h light/dark cycle, with food and water ad libitum. Procedures involving animals and their care were conducted in conformity with institutional guidelines that are in compliance with national and international laws and policies (EEC Council Directive 86/609, OJ L 358, 1 DEC.12,1987; NIH Guide for the Care and Use of Laboratory Animals, U.S. National Research Council, 1996).
Cloning of Full-length ACSBG2 cDNAHuman testis total RNA (Ambion) was reverse-transcribed using the ThermoScriptTM reverse transcription-PCR First Strand cDNA Synthesis kit (Invitrogen) to obtain testis cDNA. Full-length ACSBG2 cDNA was obtained by PCR amplification using the forward oligonucleotide primer 5'-CGCGAATTCCTGCACACCTGGAATGAC-3' (P15-1), which incorporates an EcoRI restriction site, reverse primer 5'-ATAGCGGCCGCCAGTCAGTGGTACATGTG-3' (P15-6), which incorporates a NotI site, and testis cDNA as template. The 2016-bp PCR product was cloned into the EcoRI and NotI sites of the mammalian expression vector pcDNA3 (Invitrogen). The resulting construct, which included the entire open reading frame and 13 bp of 5'-untranslated DNA but no additional 3' sequence following the stop codon, was fully sequenced. The insert sequence was identical to that of GenBankTM accession number NM_030924 [GenBank] .
Mouse ACSBG2 cDNA was cloned using a similar strategy. Total RNA was prepared from fresh mouse testis using the TRIzol reagent (Invitrogen). cDNA was prepared by reverse transcription and used as template for PCR with forward primer 5'-GAATTCAAAGGCTGGACCACCAATGACTC-3', which incorporates an EcoRI site, and reverse primer 5'-CTCGAGGCTGATCTGTTGGAGGCATGAGGA-3', which incorporates an XhoI site. The purified PCR product was cloned into the EcoRI and XhoI sites of pcDNA3. The insert was sequenced completely and contained a complete open reading frame, encoding 667 amino acids, plus 16 bp of 5'-untranslated DNA and 62 bp of 3'-untranslated DNA. The sequence of the amino-terminal portion (up to the codon for amino acid 243 of the open reading frame) was identical to that of GenBankTM accession number XM_619478, whereas the sequence of the C-terminal portion (encoding residue 244 through the 3'-untranslated region) was identical to that of XM_286829. The complete nucleotide sequence has been submitted to GenBankTM (accession number DQ250679 [GenBank] ).
Polyclonal Antibody Production and PurificationA 951-bp fragment containing the C-terminal 315 amino acids of hACSBG2 was amplified by PCR using forward primer 5'-GGATCCGCAACATTGGCTTCAAGGTCAA-3', incorporating a BamHI site, reverse primer P15-6, and full-length hACSBG2 in pcDNA3 as template. The PCR product was digested with BamHI and NotI and cloned into the bacterial expression vector pGEX5X2 (Amersham Biosciences). After transduction of Escherichia coli BL21DE3 cells, synthesis of the glutathione S-transferase-hACSBG2 fusion protein was induced by incubation with 1 mM isopropyl-
-D-thiogalactopyranoside. The fusion protein was solubilized from sonicated bacterial cells using 1% Triton X-100 and purified by chromatography on glutathione-Sepharose (Amersham Biosciences). Immunization of rabbits with purified fusion protein, boosting and bleeding was done commercially (Cocalico Biologicals, Reamstown, PA).
Crude antiserum was purified by either affinity binding or by adsorption. For affinity purification, preparative SDS-PAGE of the fusion protein on a 10% gel was used. After loading fusion protein in sample buffer and electrophoresis for 5 min, the power was turned off and a second aliquot of sample was loaded. This process was repeated such that a total of six aliquots were present, after which electrophoresis was allowed to proceed to completion. Proteins were transferred to nitrocellulose and identified by Ponceau-S staining. After washing with phosphate-buffered saline (PBS), the nitrocellulose strip containing the six bands of fusion protein was incubated with a 5-fold dilution of crude serum (in PBS) overnight at 4 °C. The membrane was washed with PBS, bound antibodies were eluted with 0.1 M glycine, pH 2.5, and the eluate was immediately neutralized by addition of 1 M Tris-HCl, pH 8.0. The buffer was exchanged back to PBS using a Centricon 30 (Millipore), 1% bovine serum albumin was added, and purified antibody was stored at -80 °C. For adsorption of the crude antiserum, a nitrocellulose membrane was prepared by electrophoretic transfer of a mixture of mouse liver proteins and COS-1 cell proteins, separated by preparative SDS-PAGE. Because neither liver nor kidney (origin of COS-1 cells) express ACSBG2, dilute antiserum was incubated with this membrane to adsorb nonspecific antibodies. Adsorbed antiserum was stored at -80 °C.
Site-directed MutagenesisThe overlap extension method was used to mutate histidine 511 of hACSBG2 to arginine (12). PCR was used to amplify two fragments of hACSBG2 that overlap and that each incorporate the desired mutation (underlined in the oligonucleotide primers); both reactions used full-length hACSBG2 in pcDNA3 as template. The first reaction amplified a 1547-bp fragment encoding amino acids 1-511 using forward primer P15-1 and reverse primer 5'-TGCGGCCGGTGACATAGAGGA-3'. The second reaction amplified a 482-bp fragment that encodes amino acids 508-666 using forward primer 5'-GTCACCGGCCGCATCAAAGAA-3 and reverse primer P15-6. The underlined CGC (R) codon replaced the wild-type CAC (H) codon. The two PCR products were gel-purified and used as template for additional PCR, with forward oligonucleotide primer P15-1 and reverse primer P15-6. The 2016-bp product was cloned into pcDNA3 as described above and completely re-sequenced. The sequence matched that of NM_030924
[GenBank]
completely, except for the engineered A
G mutation.
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Subcellular Fractionation and Western BlottingMouse tissues were homogenized in 5 volumes of buffer (0.25 M sucrose, 10 mM Tris-Cl, pH 8.0, 1 mM EDTA) containing protease inhibitor mixture (Complete, Roche Applied Science) using a Pellet Pestle homogenizer (Kimble/Kontes). Subcellular fractions were prepared essentially following the method of de Duve et al. (14) as previously described (5). For Western blots, cells were harvested by gentle trypsinization, washed with PBS containing protease inhibitor mixture, and solubilized in Laemmli sample buffer (15). Proteins were separated by SDS-PAGE on 10% gels, and transferred to nitrocellulose membranes; after incubation with primary antibody and horseradish peroxidase-conjugated secondary antibody, immunoreactive proteins were detected using the SuperSignal West Pico chemiluminescent reagent (Pierce).
Acyl-CoA Synthetase AssaysRadiochemical assays of ACS activity in frozen/thawed COS-1 cell suspensions using [1-14C]fatty acid substrates were performed essentially as described (16, 17). COS-1 cells, 3 days post-transfection with either ACSBG2 constructs or the empty pcDNA3 vector, were harvested by gentle trypsinization, washed with phosphate-buffered saline, and resuspended in 0.25 M sucrose containing 10 mM Tris (Cl-), pH 8.0, 1 mM EDTA, and protease inhibitor mixture (Complete, Roche Applied Science). Cell suspensions were subjected to at least one freeze/thaw cycle (-80 °C) prior to assay. In some cases, as noted in the text and figure legends, either KCl was added to the reaction mixture, or potassium phosphate buffer, pH 7.5, replaced Tris (Cl-), pH 7.5. When the inhibitor Triacsin C was used, the assay was modified to permit preincubation of enzyme with the inhibitor prior to adding the radiolabeled substrate. Triacsin C (final concentration, 10 µM) in ethanol was added to reaction mixes containing all components except 14C-fatty acid. An equal volume of ethanol (final concentration, 1%) was added to control incubations. After 15 min at 37 °C, labeled substrate solubilized in
-cyclodextrin (16) was added and the reaction allowed to proceed for 20 min as usual. Fluorometric ACS assays were performed as previously described (5).
Indirect Immunofluorescence and ImmunohistochemistryFor indirect immunofluorescence analysis, cells were fixed in 4% formaldehyde in phosphate-buffered saline and permeabilized with 1.0% Triton X-100 prior to incubation with primary and secondary antibodies as described previously (18). For immunohistochemistry, testis, brainstem, and spinal cord from 3-month-old mice were harvested, quickly frozen in liquid nitrogen, and stored at -80 °C. Tissue sections (5-8 µm thick) were cut using a cryostat and fixed with 4% paraformaldehyde; blocking, incubation with primary and secondary antibody, peroxidase-based detection, counterstaining, and mounting were performed as described previously (5).
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| RESULTS |
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Human ACSBG2 has a theoretical molecular weight of 74,413 Da and a pI of 8.59 (us.expasy.org/tools/pi_tool.html). No signal peptide sequence, mitochondrial targeting signal, or peroxisomal targeting signals were evident. Potential N-glycosylation sites were detected at residues 19 and 246 by the NetNGlyc 1.0 program (available at www.cbs.dtu.dk/services/NetNGlyc/). No potential O-glycosylation sites were found. Hydropathy analysis of the hACSBG2 sequence using the algorithm of Kyte and Doolittle (window size = 19) suggested one potential transmembrane region near residue 125. Application of the Dense Alignment Surface method (22) (available at www.sbc.su.se/~miklos/DAS/maindas.html) provided stronger evidence for this transmembrane region
Inspection of motif 2 (Fig. 1) of hACSBG2 revealed a surprising feature. All known proteins with either documented or predicted ACS activity, from bacteria to human, contain within this region a highly conserved arginine residue (indicated by the asterisk in Fig. 1). This arginine is preceded by glycine (7 residues upstream) and a hydrophobic amino acid (3 residues upstream) and is followed by a hydrophobic amino acid (5 residues downstream) and glycine (9-10 residues downstream).3 This "invariant" arginine residue was found to be a histidine residue in hACSBG2 (H511). However, the homologous regions of mACSBG2 and rACSBG2 contained arginine (R511, indicated by the asterisk in Fig. 2).
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Mouse and Human Tissue Expression Pattern of ACSBG2 mRNA and ProteinTo determine in which mouse tissues Acsbg2 mRNA was expressed, we performed Northern blot analysis as described under "Experimental Procedures." Using a 32P-labeled cDNA probe, a transcript of
3.0 kb was detected only in testis (Fig. 4A). No signal was observed in brain, adrenal gland, lung, skeletal muscle, small intestine, liver kidney, spleen, or heart. A human RNA Multiple Tissue Expression Array was also probed for ACSBG2 mRNA expression as described under "Experimental Procedures." Similar to the result of mouse Northern blot analysis, we detected expression only in human testis (Fig. 4B, position F8).
When the human expressed sequence tag (EST) data base was probed with the human ACSBG2 cDNA sequence, more than half of the EST clones with sequence identity were from testis libraries, in agreement with the Northern blot and RNA dot blot observations. However,
10% of the EST clones were from medulla oblongata (brainstem) libraries; the remainder was primarily from mixed tissue libraries and tumor cells. Therefore, we examined ACSBG2 expression by Western blot in several mouse tissues (Fig. 4C). Robust ACSBG2 protein expression was seen in mouse testis. The protein was also clearly detected both in medulla and in spinal cord but not in liver, kidney, heart, lung, or whole brain (cerebral cortex plus cerebellum, without brainstem).
Identification of Mouse Cell Types Expressing Acsbg2Both in situ hybridization and immunohistochemical analysis were used to identify the specific cell types that endogenously express ACSBG2 in testis. For in situ hybridization, a digoxygenin-labeled antisense RNA probe was used. In contrast to Acsbg1 mRNA, which is expressed primarily in the interstitial cells of Leydig (5), Acsbg2 mRNA appeared to be expressed mainly in the Sertoli cells (Fig. 5, A and B). No labeling was observed in testis sections incubated with the corresponding sense RNA probe (data not shown). A similar result was obtained when mouse testis sections were probed with affinity-purified ACSBG2-specific antibody (Fig. 5, C and D). We also used histochemistry to examine medulla oblongata and spinal cord ACSBG2 expression. In the medulla, ACSBG2 appeared to be highly expressed in large motor neurons of the medullary reticular formation and the hypoglossal nucleus (Fig. 5, E and F). Some motor neurons in both the anterior and posterior horns of the cervical spinal cord showed ACSBG2 labeling as well (Fig. 5, G and H), but few cells of the thoracic spinal cord showed evidence of ACSBG2 expression (data not shown).
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65 and
50 kDa were present in the cytosol (S) fraction, and no signal was observed in the nuclear (N), mitochondrial (M), or peroxisome-enriched light mitochondrial (L) fractions. Based on the results of in situ hybridization and immunohistochemistry experiments, which indicated that endogenous ACSBG2 was found in Sertoli cells, we obtained the mouse TM4 Sertoli cell line from American Type Culture Collection. However, endogenous ACSBG2 was not detected in this cell line by either Western blot or indirect immunofluorescence (data not shown). When TM4 Sertoli cells were transfected with mAcsbg2 cDNA, immunofluorescence microscopy revealed that the protein was predominantly in the cytoplasm (Fig. 6B), as was the case for transfected COS-1 cells (Fig. 6A).
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9) or linoleic acid (C18:2
6) were used as substrates (Fig. 7). The hACSBG2-specific rates of oleic acid and linoleic acid activation were, respectively, 28 and 31% higher than endogenous COS-1 cell rates. These increases, though modest, were statistically significant (p < 0.0001 and p = 0.015, respectively). No evidence for significant activation of C12:0, C16:0, C18:0, C20:4
6, C22: 6
3, or C24:0 by hACSBG2 was observed (Fig. 7 and data not shown). COS-1 cells expressing hACSBG2 were also investigated using a non-isotopic, fluorometric ACS assay, with many of the same fatty acids as substrate. Results of both assays were similar (data not shown). Using the fluorometric assay, we also tested C18:3
3 as a substrate, but found it was not activated to a significant degree by hACSBG2 (data not shown).
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As indicated earlier, mouse ACSBG2 retains an arginine residue (Arg-511) within motif 2 (Fig. 2). Therefore, we also expressed this protein in COS-1 cells and measured its ACS activity. The level of expressed mACSBG2 protein was similar to that of hACSBG2 and hACSBG2/H511R (Fig. 3D). The substrate specificity of mACSBG2 was similar to that of native hACSBG2 (Fig. 7). Activation rates for oleic acid and linoleic acid activation were, respectively, 30 and 35% greater than endogenous COS-1 cell rates, findings that were statistically significant (p < 0.0001 and p < 0.02, respectively). No evidence for mACSBG2 activation of C16:0, C18:0, or C24:0 was observed (Fig. 7 and data not shown).
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To understand the nature of this increase in ACSBG2 activity when potassium phosphate buffer was used, we investigated the effects of potassium ions and Tris on enzyme activity. When activation of oleic acid was assayed in vector-transfected cells or COS-1 cells overexpressing mACSBG2 in Tris buffer with increasing concentrations of KCl, no significant stimulation of activity was noted (Fig. 8B). When the same assay was performed in potassium phosphate buffer with increasing concentrations of Tris, a modest, but not statistically significant, inhibitory effect was observed (Fig. 8C). However, the magnitude of this inhibition was not sufficient to explain the differences observed between potassium phosphate buffer and Tris buffer.
Effect of Triacsin C on Endogenous COS-1 Cell and ACSBG2 ACS ActivityTriacsin C has been shown to inhibit long-chain fatty acid activation by
60% in rat liver at a maximally effective concentration of 10 µM (24). We investigated the effects of Triacsin C on COS-1 cells expressing ACSBG2 cDNAs to determine (a) whether this compound affected ACSBG2 activity and (b) if the endogenous COS-1 cell ACS activity background could be reduced. COS-1 cells transfected with hACSBG2, the hACSBG2 H511R mutant, mACSBG2, or empty vector were preincubated with Triacsin C and then assayed. As shown in Table 1, when either C18:1 or C18:2 were used as substrate, the inhibitor had no effect on enzyme activity of any of the three ACSBG2 constructs. However, Triacsin C did reduce the endogenous COS-1 cell activation of C18:1 and C18:2 by 50 and 40%, respectively, increasing the -fold increase in enzyme activity catalyzed by all three expressed ACSBG2 constructs (Table 1).
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Effect on Catalytic Function of the Presence of a Histidine Rather Than Arginine Residue within Motif 2The crystal structures of three ACSs, a bacterial and a yeast acetyl-CoA synthetase (25, 26) and a bacterial long-chain ACS (27), have been solved. The arginine residue within motif 2 is conserved within all three structures. The arginine side chain appears to form hydrogen bonds with the ribose 3'-hydroxyl group in the acyl-adenylate ACS reaction intermediate. We hypothesized that substitution of a histidine residue (which has a considerably lower pK' than arginine) would lower the pH optimum of wild-type hACSBG2, containing the histidine substitution, as compared with the wild-type mACSBG2, which has an arginine at this position. When overexpressed in COS-1 cells, the pH profile of hACSBG2 (assayed in potassium phosphate buffer) was consistently biphasic (Fig. 9). Optimal activity was seen at pH 6.5, but a lower secondary maxima was seen at pH 7.5. In contrast, the pH profile for mACSBG2 was monophasic with maximal activity at pH 7.0-7.5 (Fig. 9). However, when the human H511R mutant was expressed in COS-1 cells, the pH profile was also monophasic, and the pH optimum was shifted to a higher pH, similar to that seen with the mouse protein (Fig. 9). This experiment was repeated in the presence of 10 µM Triacsin C; although the background (endogenous COS-1 cell) activity was lower, the pH profiles of hACSBG2, mACSBG2, and the H511R mutant of hACSBG2 were unchanged (data not shown). At neutral pH (7.0-7.5), the histidine-containing human enzyme was considerably less active than either the mouse enzyme or the human H511R mutant. These data suggest that the substitution of histidine for arginine in the active site of hACSBG2 affects the catalytic efficiency of the human enzyme in vivo.
| DISCUSSION |
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Of the fatty acids tested for activation by either human or mouse ACSBG2 expressed in COS-1 cells, only C18:1
9 and C18:2
6 appeared to be substrates. These two fatty acids are abundant in normal mouse testis; C18:1
9 and C18:2
6 accounted for nearly 55% of total testis fatty acids.6 However, ACS activity of ACSBG2 was modest when compared with the robust activity of ACSBG1 when expressed in COS-1 cells. One possible reason for weak ACS activity is that the true endogenous substrate for ACSBG2 has not yet been identified. An alternative explanation is that correct subcellular location of ACSBG2 is critical for its enzyme activity. In subcellular fractions of testis, ACSBG2 was primarily in the microsomal pellet, whereas the protein expressed in either COS-1 cells or TM4 Sertoli cells was predominantly cytoplasmic. This question cannot be resolved until a cell line in which ACSBG2 is endogenously expressed is identified.
The ACSBG2-dependent ACS activity of transfected COS-1 cells was increased when assayed in potassium phosphate buffer instead of our typical assay buffer, Tris. This could not be attributed to stimulation by the presence of potassium ions, because assays done in Tris with increasing concentrations of K+ up to 4-fold higher than that found in assays with potassium phosphate did not stimulate enzyme activity. We also considered the possibility that Tris might have an inhibitory effect on catalytic efficiency. In other enzymes, Tris has been shown to form hydrogen bonds with amino acid residues that would normally participate in substrate recognition (28). Although the presence of Tris in ACS assays conducted in potassium phosphate buffer was slightly inhibitory, the effect was not concentration-dependent, and maximal inhibition was only 11% (at 200 mM Tris for mACSBG2), a value that was not statistically significant.
Triacsin C, 1-hydroxy-3-(E,E,E-2',4',7'-undecatrienylidine)triazene, was initially described as an inhibitor of long-chain ACS activity (29). Recent work has established that three members of the long-chain ACS family, ACSL1, ACSL3, and ACSL4, are particularly sensitive to this compound (30, 31). ACSBG2, like some members of the very long-chain ACS family (32, 33), was not inhibited by Triacsin C. Using this inhibitor, we were able to decrease the background of endogenous COS-1 cell ACS activity without affecting ACSBG2-specific ACS activity, thereby improving the signal-to-noise ratio. Results of assays done in the presence of Triacsin C thus confirmed that ACSBG2 preferentially activates C18:1 and C18:2.
A curious feature of the human ACSBG2 amino acid sequence was the presence of a histidine rather than an arginine (residue 511) in the highly conserved region referred to as Motif 2 (Figs. 1 and 2, indicated by an asterisk). In this position, all ACSs known to us have an arginine residue, including mouse and rat ACSBG2. This includes short-, medium-, long-, and very-long chain ACSs, ACSBG1, and several other proteins predicted to have ACS activity from all species, including mammals, invertebrates, yeasts, fungi, plants, bacteria, and archea.3 Evidence from both genomic DNA and EST clone sequences support the presence of His rather than Arg at amino acid 511 of the human protein. No evidence for polymorphism at this residue was found in the NCBI single nucleotide polymorphism data base. We hypothesized that, if this residue is involved in catalysis, mutating the histidine to arginine would yield a more robust enzyme at physiological pH. This proved to be correct, because the H511R mutation increased the ACS activity of hACSBG2 measured at pH 7.5 in phosphate buffer without changing its substrate specificity. Furthermore, native mACSBG2, which retains the arginine at residue 511, had similar activity to the human H511R mutant hACSBG2. Further analysis revealed that the histidine residue causes the human enzyme to have a more acidic pH optimum than the arginine-containing mouse enzyme; mutation of this histidine to arginine raised the pH optimum closer to that of the mouse enzyme.
Structural features of acyl-CoA synthetases crystallized in the presence of substrates or reaction intermediates indicated that these proteins undergo a large conformational change during catalysis (25-27). ATP binding is thought to promote a closed conformation, creating a fatty acyl binding pocket and formation of the acyl-adenylate intermediate. Upon binding of CoA-SH, the smaller C-terminal domain rotates
140° with respect to the larger N-terminal domain, facilitating thioester formation and release of AMP. The His-511 residue in hACSBG2 (and corresponding Arg residues in other ACSs) resides in the putative linker region connecting the N- and C-terminal domains. An Asp located three residues downstream of the conserved Arg in yeast acetyl-CoA synthetase is thought to be the "hinge" residue for this conformational change (25); however, the hinge position in both ACSBG1 and ACSBG2 is Glu rather than Asp (Figs. 1 and 2). The consequence of His rather than Arg just upstream of the hinge residue on rotation of the C-terminal domain is not clear.
There is evidence that this residue is catalytically important in other ACSs. Black et al. found that mutation of the homologous arginine residue (R453) to alanine in the bacterial long-chain ACS, FadD, reduced activation of C10:0, C14:0, or C18:1 to nearly zero (3). Similarly, Zou et al. (23) mutated the homologous Arg-523 of Saccharomyces cerevisiae very long-chain ACS, Fat1p, to alanine and found that activation of C24:0 was reduced to
2% of wild type. In the present study, we found that the Arg
His change decreased activity measured at physiological pH levels. Site-directed mutagenesis changing His to Arg increased activity measured at pH 7.0-7.5. The available crystal structures of three ACSs all suggest that the Arg side chain interacts with the 3'-hydroxyl group of ribose in ATP/AMP (25-27). It is possible that stabilization of ATP in its binding site facilitates the initial transformation from an open to the closed conformation and that this function is less efficient when His rather than Arg is present. Taken together, these findings suggest that ACSBG2 residue 511 is catalytically important and that there are likely other amino acid changes in the catalytic pocket of hACSBG2 that may compensate for the Arg
His switch.
Zheng et al. (34) recently described a transcriptional variant of ACSBG2 that they referred to as "BGR-like." This variant is predicted to encode a protein of 497 amino acids that would retain both conserved sequence motifs but lack the N-terminal 187 residues of ACSBG2. Motif 1 would thus begin only 41 residues downstream of the putative start codon, raising questions regarding the ability of BGR-like to catalyze fatty acid activation. Using reverse transcription-PCR, these investigators concluded that BGR (i.e. ACSBG2) was expressed primarily in testis but also in pancreas, kidney, liver, and small intestine, while BGR-like was found almost exclusively in testis. In contrast, we found no evidence for ACSBG2 expression in tissues other than testis, brainstem (medulla oblongata), and spinal cord. Using as a guide the nucleotide sequence of the BGR-like gene, which lacks exon 5 of ACSBG2, we re-evaluated the relevant ESTs in the NCBI data base. 28 ESTs were informative, allowing a clear distinction between ACSBG2 and BGR-like. 19 ESTs, including 12 from testis, supported the ACSBG2 sequence. On the other hand, 9 ESTs (7 from testis) corresponded to BGR-like, supporting the existence of this transcript variant. Antibody raised against the C terminus of ACSBG2 should cross-react with BGR-like. Our Western blot analyses of unfractionated mouse tissues detected only a single band of 75-80 kDa (Fig. 4C), in agreement with the predicted size of ACSBG2. When testis was subjected to differential centrifugation to determine its subcellular distribution, however, the soluble (cytosolic) fraction contained a band of
50 kDa (Fig. 6C), which is near the predicted size of BGR-like (53.5 kDa). Also using reverse transcription-PCR, Zheng et al. (34) reported that BGR-like expression was decreased or absent in fetal testis and in adults with azoospermia, suggesting a potential role for this gene/protein in male fertility. ACSBG2 expression in azoospermic testes was not determined in this study. Thus, it remains possible that ACSBG2 plays a role in spermatogenesis.
In summary, ACSBG2 was identified as the only mammalian ACS that shares a high degree of amino acid identity with ACSBG1. The limited tissue expression pattern of ACSBG2, along with its limited substrate specificity, suggests that participation of ACSBG2 in X-ALD pathology is unlikely. In the testis, this protein may play an important role in spermatogenesis, but its function in the brainstem remains unclear.
| FOOTNOTES |
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* This work was supported by National Institutes of Health Grants NS37355, HD10981, and HD24061. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. ![]()
1 To whom correspondence should be addressed: Kennedy Krieger Institute, 707 N. Broadway, Baltimore, MD 21205. Tel.: 443-923-2754; Fax: 443-923-2755; E-mail: watkins{at}kennedykrieger.org.
2 The abbreviations used are: ACS, acyl-CoA synthetase; h, human; m, mouse; r, rat; X-ALD, X-linked adrenoleukodystrophy; PBS, phosphate-buffered saline; EST, expressed sequence tag; Triacsin C, 1-hydroxy-3-(E,E,E-2',4',7'-undecatrienylidine)-triazene. ![]()
3 P. A. Watkins, submitted for publication. ![]()
4 A uniform nomenclature for long-chain ACSs was approved by the Nomenclature Commission of the Human Genome Organization (35), and adaptation of this system for several other ACS families, including the "bubblegum" family, was recently approved. Approved gene names ACSBG1 and ACSBG2 are used to designate genes formerly called BG1 and BGR, respectively. ![]()
5 GenBankTM accession numbers: hACSBG2, NM_030924
[GenBank]
; mACSBG2, DQ250679
[GenBank]
; and rACSBG2, XM_236792
[GenBank]
. ![]()
6 A. B. Moser and P. A. Watkins, unpublished observations. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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