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Originally published In Press as doi:10.1074/jbc.M512931200 on January 18, 2006

J. Biol. Chem., Vol. 281, Issue 11, 7399-7405, March 17, 2006
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Humanized beta-Thalassemia Mouse Model Containing the Common IVSI-110 Splicing Mutation*

Jim Vadolas, Recipient of the Cooley's Anemia Research Fellowship{ddagger}1, Mikhail Nefedov{ddagger}, Hady Wardan{ddagger}, Sima Mansooriderakshan{ddagger}, Lucille Voullaire{ddagger}, Duangporn Jamsai{ddagger}, Robert Williamson{ddagger}, and Panayiotis A. Ioannou{ddagger}§{dagger}

From the {ddagger}Cell and Gene Therapy Research Group, Murdoch Childrens Research Institute, The University of Melbourne, Royal Children's Hospital, Parkville 3052, Melbourne, Australia and §The Cyprus Institute of Neurology and Genetics, P. O. Box 3462, 1683 Nicosia, Cyprus

Received for publication, December 5, 2005 , and in revised form, January 17, 2006.


    ABSTRACT
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Splicing mutations are common causes of beta-thalassemia. Some splicing mutations permit normal splicing as well as aberrant splicing, which can give a reduced level of normal beta-globin synthesis causing mild disease (thalassemia intermedia). For other mutations, normal splicing is reduced to low levels, and patients are transfusion-dependent when homozygous for the disease. The development of therapies for beta-thalassemia will require suitable mouse models for preclinical studies. In this study, we report the generation of a humanized mouse model carrying the common IVSI-110 splicing mutation on a BAC including the human beta-globin (hubeta-globin) locus. We examined heterozygous murine beta-globin knock-out mice (mubetath-3/+) carrying either the IVSI-110 or the normal hubeta-globin locus. Our results show a 90% decrease in hubeta-globin chain synthesis in the IVSI-110 mouse model compared with the mouse model carrying the normal hubeta-globin locus. This notable difference is attributed to aberrant splicing. The humanized IVSI-110 mouse model accurately recapitulates the splicing defect found in comparable beta-thalassemia patients. This mouse model is available as a platform for testing strategies for the restoration of normal splicing.


    INTRODUCTION
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Thalassemia is one of the common inherited genetic disorders affecting hemoglobin synthesis. Approximately 300,000 patients with clinically relevant hemoglobinopathies are born each year (1). In the case of beta-thalassemia a reduction or absence of beta-globin chain synthesis results in free or unpaired {alpha}-globin chains, which aggregate and precipitate within red cells causing ineffective erythropoiesis and severe anemia.

Over 200 different mutations have been found that cause beta-thalassemia, with splicing mutations among the most common. Most of these mutations activate aberrant cryptic 5'-donor or 3'-acceptor splice sites without completely abolishing normal splicing. These mutations lead to the production of variable amounts of normal transcripts. Some mutations allow a significant level of normal splicing (such as IVSI-6), leading to thalassemia intermedia, whereas others reduce normal splicing to low levels (such as IVSI-110) or very low levels (such as IVSI-5 and IVSII-654), causing a transfusion-dependent disease in homozygotes.

Because of the complex pathophysiology associated with the hemoglobinopathies, transgenic mouse models are an essential platform for delineating the pathological mechanisms and, as in vivo model systems, for validating future therapeutic strategies. The humanized mouse model approach, where the transgenic mouse model contains large human genomic fragment(s), has provided valuable insight into the regulatory elements required for the developmental expression of human globin genes (2-6). To date, the YAC transgenic mouse for sickle cell anemia, exclusively expressing human betas-globin, is the only mouse thalassemic model expressing a disease gene from the intact hubeta-globin locus (7). Other transgenic mice exclusively expressing human HbA, HbC, HbF, and HbS have also been reported, but these mouse models were created by co-injecting large genomic DNA fragments encompassing truncated or hybrid versions of the beta-globin locus containing the {alpha}1-globin gene (8-10). The only beta-thalassemia splicing mouse model reported to date is a knock-in model that contains the common IVSII-654 beta-thalassemia splicing mutation in the context of the mouse beta-globin (mubeta-globin) locus (11).

With the recent development of targeted modification techniques for BACs such as recE/recT-based homologous recombination (12-15), and the availability of site-specific BAC mutagenesis (16-19), the main obstacle to generating transgenic mouse models for disease-causing mutations has been overcome. We have recently reported the first humanized mouse model for a deletion mutation causing beta-thalassemia at codons 41-42 (20). Unlike the situation with the normal hubeta-globin locus, these mice fail to show phenotypic complementation in heterozygous beta-globin knock-out (KO) background (mubetath-3/+), or homozygous beta-globin knock-out mice (mubetath-3/th-3). This mouse is a suitable in vivo model system to investigate gene correction strategies in hematopoietic stem cells and to identify HbF inducers.

We describe the development and characterization of a humanized mouse model carrying the IVSI-110 splicing mutation in the context of the genomic hubeta-globin locus. This mutation was first described in 1981 and is one of the most common splicing mutations found in the Eastern Mediterranean region (21). Our results indicate that this humanized IVSI-110 mouse model recapitulates the splicing defect that is typical for IVSI-110 in beta-thalassemia patients. This mouse will serve as a platform for testing novel strategies for the restoration of normal splicing.


    MATERIALS AND METHODS
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Characterization of the 183-kb Genomic Fragment Containing the hubeta-Globin Locus—The PAC clone 148O22 containing the hubeta-globin locus in a 183-kb genomic fragment was first isolated from the RPCI I PAC library (22) and shown to contain the beta-globin locus (23). The 183-kb genomic fragment was retrofitted into the pEBAC140 cloning vector as a single NotI fragment to generate pEBAC/148beta (see Fig. 1A) (24). Sequencing of the 5'- and 3'-ends of the genomic insert (data not shown) and alignment with the human genome sequence (GenBankTM accession number NT_028310.10) revealed that the genomic insert is 183,039-bp long, with 122,076 bp upstream of the start codon of the {epsilon}-globin gene and 17,672 bp downstream of the stop codon of the beta-globin gene.

Introduction of the IVSI-110 Mutation into hubeta-Globin Locus—Using GET recombination, an inducible homologous recombination system for Escherichia coli, the IVSI-110 mutation was introduced into the intact hubeta-globin locus contained in a BAC vector (14). The beta-globin locus containing the IVSI-110 mutation was purified from DH10B cells using the Qiagen BAC purification procedure (Qiagen, Hilden, Germany). The 183-kb genomic insert was prepared for microinjection as previously reported (25).

Genotyping of Transgenic Mice—Genotyping was performed as described previously (25). In brief, transgenic founder mice and F1 progeny were screened by PCR using the following primer pair, hubeta forward 5'-ACAAGACAGGTTTAAGGAGACCA-3' and hubeta reverse 5'-GTCTGTTTCCCATTCTAAACTGTA-3'. These primers amplified a 447-bp product of the hubeta-globin gene. F1 progeny were bred with heterozygous knock-out mice (mubetath-3/+) to generate transgenic mice on a heterozygous and knock-out background. The genotyping was performed by multiplex PCR using the following primer pairs: hubeta forward/hubeta reverse (as above); HPRT-forward, 5'-GATGGGAGGCCATCACATTGTAG-3' and HPRT-reverse, 5'-GCGACCTTGACCATCTTTGGATTA-3'; and mubeta-forward, 5'-TGAGAAGGCTGCTGTCTCTTG-3' and mubeta-reverse, 5'-CAGAGGATAGGTCTCCAAAGCTA-3'. The conditions used for the multiplex PCR were denaturation at 94 °C for 30 s, annealing at 55 °C for 30 s, and extension at 72 °C for 2 min. After 30 cycles, the PCR products were resolved by 1.5% agarose gel-electrophoresis.

Determination of Transgene Integrity—The long range integrity of the hubeta-globin locus in transgenic lines was examined by Southern blot analysis after digestion of genomic DNA with the Cfr9I and SfiI restriction endonucleases (Fermentas, Hanover, MD). Cfr9I digestion of the hubeta-globin locus yields a single 36-kb fragment that contains the {gamma}-, {delta}-, and beta-globin genes, whereas SfiI digestion cuts the genomic fragment twice in the middle of the fragment (see Fig. 1). To avoid shearing the genomic DNA, splenocytes from representative transgenic mice were suspended at a final concentration of 2 x 107 cells/ml in 0.5% InCert-agarose (Cambrex Bio Science). The solidified plugs were incubated overnight in buffered Proteinase K buffer (100 mM EDTA at pH 8.0, 0.2% sodium deoxycholate, 1% sodium lauryl sarcosine, 0.2 mg/ml of Proteinase K) at 50 °C. After several washes in 20 mM Tris, 50 mM EDTA at pH 8.8, the plugs were digested overnight with Cfr9I or SfiI. The plugs were loaded into the wells of a 1% agarose gel, and genomic DNA was separated in a CHEF-DRII pulsed-field gel electrophoresis system (Bio-Rad). The DNA was alkali-blotted onto a Hybond membrane (Amersham Biosciences) after partial depurination and hybridized with a PCR probe amplified from the hubeta-globin locus using primers hubeta-forward/hubeta-reverse.

Determination of Transgene Copy Number—Transgene copy number in mice was performed by quantitative radioactive PCR as previously reported (25). In brief, PCR was performed using the primer pair HM-forward 5'-GATGAAGTTGGTGGTGAGGCCCT-3'/HM-reverse 5'-CCTGAAGTTCTCAGGATCCA-3' on mouse tail genomic DNA. These primers amplify the hubeta-globin and mubeta-globin sequences equally, yielding 381-bp and 367-bp products, respectively. The human and mouse products can be readily distinguished because the murine product contains a unique NcoI site that yields two fragments, 242 and 125 bp. The NcoI-digested PCR products were run on a 2.0% 3:1 Nusieve gel (BMA). The gel was washed for 45 min, in 7% trichloroacetic acid and vacuum-dried at 65° C onto blotting paper. The dried radioactive gel was exposed to a Low Energy Storage Phosphor Screen (Molecular Dynamics, Amersham Biosciences), and the Phosphor Screen was scanned using the Storm 840 Scanner (Molecular Dynamics). Each band corresponding to mubeta-globin and hubeta-globin PCR product was quantitated using Image Quant (Molecular Dynamics).

Location of Transgene Integration Site—Fluorescence in situ hybridization analysis was used to examine transgene integration sites and confirm hemizygosity or homozygosity for the transgene in mice exclusively expressing hubeta-globin. Fibroblasts isolated from tail biopsies, were grown in Dulbecco's modified Eagle's medium (Sigma) supplemented with 10% fetal calf serum, 100 units/ml penicillin, and 100 µg/ml streptomycin. The fibroblasts were harvested after exposure to colcemid for 2 h. Chromosome preparations were obtained using standard techniques and hybridized with a pEBAC/148beta DNA probe. The probe was labeled with digoxigenin (Roche Applied Science) and detected with rhodamine-conjugated anti-digoxigenin to locate the inserted transgenes. The slides were mounted in Vectashield (Vector Laboratories) containing DAPI2 counterstain. The cells were examined and analyzed using a Zeiss epifluorescence microscope with appropriate filters, and images were captured using Cytovision imaging equipment and software (Applied Imaging Corp., Santa Clara, CA). Metaphase and interphase nuclei were analyzed for localized signals and chromosome identification achieved by analysis of the reversed DAPI banding pattern.

RT-PCR Analysis—Total RNA was prepared using the Tri-Reagent BD system (Molecular Research Center, Cincinnati, OH) as described by the manufacturer. cDNA was synthesized using random hexamers as primers. Primers used to amplify the sequence between exon 1 and exon 2 were: forward primer 5'-CGCCTCGAGGAGAAGTCTCCGTTAC-3' and reverse primer 5'-CGCGAATTCCCCATAACAGCACAGGAGT-3'. The PCR was performed using the following conditions: denaturation at 94 °C for 30 min, annealing at 55 °C for 30 s, and extension at 72 °C for 30 s. After 30 cycles, the PCR products were resolved on a 2% Nusieve GTG-agarose gel. The above primers amplified a 170-bp and a 189-bp products from the hubeta-globin gene, which correspond to the normal and aberrantly spliced mRNA, respectively.

Sequencing of RT-PCR Products—The PCR-amplified products were digested with XhoI and EcoRI and cloned into the respective sites of pBluescript-KS+. Colonies were picked based on blue/white color selection and verified by sequencing using Big Dye Terminator Kit V3.1 (PerkinElmer) according to manufacturer's specifications and using the RT-PCR forward primer as above. In brief, sequencing PCR was performed using the following conditions: rapid thermal ramp to 96 °C, hold at 96 °C for 30 s, rapid thermal ramp to 50 °C, hold at 50 °C for 15 s, rapid thermal ramp to 60 °C, hold at 60 °C for 4 min. After 25 cycles, rapid thermal ramp to 4 °C.

Hematological Analysis—Blood was collected from transgenic mice ≥8 weeks of age by retro-orbital bleeding. Full blood examination was performed on whole blood collected into tubes containing EDTA. Full blood examination was performed using an automated Roche Applied Science Cobas Helios hematological analyzer at the Walter and Eliza Hall Institute, Melbourne, Australia. A minimum of 2 weeks was allowed between repeat samples, when such samples were necessary, to minimize the distortion of hematological parameters by frequent bleeding. Cellulose acetate gel electrophoresis was used to visualize hemoglobin tetramers. Samples containing approximately equal amounts of hemoglobin were run on cellulose acetate membranes (Helena Laboratories). Hemoglobin bands were visualized using Ponceau S stain.


Figure 1
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FIGURE 1.
The map of the hubeta-globin locus contained in a 183-kb genomic fragment. A, the 183-kb fragment contains seven olfactory receptor (OR) genes upstream of the locus control region and the hypersensitive site 5'-HS-111, located ~111 kb upstream of the {epsilon}-promoter. Cfr9I restriction sites are indicated by C and the SfiI restriction sites are indicated by S. A 36 kb fragment is released after Cfr9I digestion, containing the G{gamma}-, A{gamma}-, {delta}-, and beta-globin genes. B, Southern blot mapping of transgenic mice containing the normal hubeta-globin locus (left panel) and the IVSI-110 hubeta-globin locus transgenic mice. C, schematic diagram indicating transgene copy number and proposed orientation corresponding to the normal (top) and IVSI-110 (bottom) hubeta-globin locus.

 
Measurement of Globin Chain Synthesis—The measurement of mubeta-globin and hubeta-globin chain synthesis was performed by high-pressure liquid chromatography (HPLC) as described previously (25). Red blood cells (20 µl) were lysed in 500 µl of lysis buffer (0.1 M 2-mercaptoethanol, 0.1 M HCl) and then made 1 ml with 500 µl of 50% aqueous acetonitrile. The lysate was centrifuged, and the supernatant was analyzed by HPLC. Globin chain separation was performed by loading 30 µl of lysed red cells onto a Vydac C4 column (Vydac, Hesperia). The proteins eluting from the column were measured at 220, 280, and 413 nm with an Agilent 1100 diode array detector. Peak protein fractions were collected and analyzed by tandem mass spectrometry to confirm globin chain type.


    RESULTS
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Creation and Characterization of BAC Transgenic Mice—In this study, our aim was to establish a humanized mouse model carrying the IVSI-110 splicing mutation and determine whether the hubeta-globin pre-mRNA produced in mice was aberrantly spliced as in humans. Founder mice carrying either the normal or IVSI-110 genomic fragment were identified by screening genomic DNA by hubeta-globin-specific PCR (data not shown) and mated with C57BL/6 mice to generate F1 germ-line transgene progeny. The transgenic mice containing two copies of the normalbeta-globin locus or the IVSI-110 hubeta-globin locus were bred with mubetath-3/+ mice to generate mice hemizygous for the transgene on a heterozygous knock-out background (mubetath-3/+,hubeta+/0 or mubetath-3/+,IVSI-110beta+/0).

Integrity of Transgene—The 183-kb fragment contains seven olfactory receptor genes upstream of the locus control region and the hypersensitive site 5'-HS-111 located ~111 kb upstream of the {epsilon}-promoter (Fig. 1A). The integrity of the hubeta-globin locus in the transgenic lines was determined by Southern blot analysis. Genomic DNA embedded in agarose was digested with Cfr9I or SfiI and resolved by pulse field gel electrophoresis (Fig. 1B). A 447-bp probe corresponding to the hubeta-globin gene was used to demonstrate the integrity of the integrated transgene. The presence of a single 36-kb fragment following Cfr9I digestion in both transgenic lines correlated with the {gamma}-, {delta}-, and beta-globin genomic fragment as being intact. The presence of a single SfiI fragment ~160 kb in size in the transgenic line containing the normal beta-globin locus is consistent with the integration of two genomic fragments in a tail-to-tail orientation (Fig. 1C). The presence of two SfiI fragments, 140 and 175 kb in the IVSI-110 transgenic line, is consistent with the integration of two genomic fragments in a head-to-tail orientation (Fig. 1C).

Fluorescence in Situ Hybridization Analysis of Transgenic Mice—Transgenic mice carrying the normal or the IVSI-110 hubeta-globin transgene were analyzed by fluorescence in situ hybridization. Metaphase spreads of fibroblast cells were prepared from F0 progeny. The transgenic founders were all found to contain a single integration site (Fig. 2A). The integrated BAC DNA was located using labeled insert DNA, and chromosome identification was made on the basis of the banding pattern obtained from the inverted DAPI metaphase image. In the founder containing the normal hubeta-globin locus, the transgene was proximally located on chromosome 14, whereas in the founder containing the IVSI-110 locus the transgene was medially located on chromosome 1 (Fig. 2A).

Genotype Determination—To determine the degree of hematological complementation of the hubeta-globin locus in a thalassemic environment, transgenic mice were bred onto a mubetath-3/+ and a mubetath-3/th-3 background. The transgenic mice were genotyped by multiplex PCR using genomic DNA. Three genes were amplified by PCR (Fig. 2B). The bottom band represents the mubeta-globin gene (198 bp), the middle band represents the HPRT knock-out cassette (315 bp), and the top band corresponds to the hubeta-globin transgene (447 bp). Transgenic mice on a mubetath-3/+ background were obtained for both transgenic lines, whereas viable transgenic mice on a mubetath-3/th-3 could only be generated with the normal hubeta-globin locus. We have previously reported that homozygosity for two copies of the normal locus was necessary to rescue the embryonic lethal mubetath-3/th-3 mice, with the mice displaying normal hematological parameters as measured by full blood examination. We were unable to identify any IVSI-110 transgenic on a mubetath-3/th-3 background at birth indicating that the level of globin expression is insufficient to support fetal growth to birth. This is because of the low level of hubeta-globin expression caused by the IVSI-110 mutation.

Transgene Copy Number Determination—Two transgenic lines were analyzed by quantitative radioactive PCR. Because the human and the mouse globin genes are very similar at the DNA sequence, the primers were designed to amplify both the hubeta-globin and mubeta-globin genes. However, only the amplified mouse PCR product contains an internal NcoI restriction site, which was used to differentiate between the mouse- and human-specific beta-globin PCR product. The PCR products generated using the HM primers set were digested with NcoI and separated by agarose gel electrophoresis (Fig. 2C). The two lower bands represent the two mouse-specific products, 125 and 242 bp, whereas the top band represents the undigested hubeta-globin gene, 381 bp. As expected, the wild type NcoI-digested mouse control PCR produced two mouse-specific PCR products, whereas the human control PCR produced one human-specific PCR product. The relative intensity of the hubeta-globin-specific PCR product was compared with the mubeta-globin-specific PCR products on a wild type background (which contains four adult beta-globin genes) and on a mubetath-3/+ background (which contains two adult beta-globin genes). Using this approach, the transgene copy number was determined. Both transgenic lines contained two copies of the hubeta-globin locus (Fig. 2C).


Figure 2
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FIGURE 2.
Characterization of transgenic lines containing the hubeta-globin locus. A, fluorescence in situ hybridization analysis of a transgenic mouse carrying the normal hubeta-globin locus (top panel): the probe (red) has hybridized to the inserted DNA proximally on chromosome 1; transgenic mouse carrying the IVSI-110beta-globin locus (bottom panel): the probe (red) has hybridized to the inserted DNA medially on chromosome 14. B, genotyping analyses of transgenic mice by multiplex PCR. Lane 1, molecular weight marker X (Roche Applied Science); lane 2, wild type C57BL/6; lane 3, heterozygous beta-globin knock-out mouse (mubetath-3/+); lane 4, transgenic mouse containing the hubeta-globin locus on a wild type background (hubeta+/0,mubeta+/+); lane 5, hemizygous transgenic mouse on a heterozygous knock-out background (hubeta+/0,mubetath-3/+); lane 6, transgenic mouse on a homozygous knock-out background (hubeta+/0,betath-3/th-3). C, transgene copy number determination by quantitative multiplex PCR. T, transgenic mice on a wild type background (hubeta+/0,mubeta+/+); DH, hemizygous transgenic mice on a heterozygous knock-out background (hubeta+/0,mubetath-3/+). The transgene copy number was determined for each transgenic line as indicated.

 
Expression of hubeta-Globin in Adult Transgenic Mice—The transgenic lines containing the normal or IVSI-110 hubeta-globin locus were bred with mubetath-3/+ mice to generate mice hemizygous for the hubeta-globin locus on a mubetath-3/+ background. The expression level of the hubeta-globin chain was 10% in wild type transgenic mice and 35% in mubetath-3/+ mice. Importantly, further breeding produced viable mubetath-3/th-3 mice expressing only the hubeta-globin locus (mubetath-3/+,hubeta+/0) (Fig. 3A), thus confirming that the 183-kb genomic fragment, containing the hubeta-globin locus, can fully complement mubetath-3/th-3 mice. Measurement of globin chain synthesis in the humanized IVSI-110 mouse on wild type background was below measurable levels as seen by HPLC (data not shown); however hubeta-globin chain synthesis by the humanized IVSI-110 mouse on mubetath-3/+ background expressed hubeta-globin at ~3% relative to mu{alpha}-globin chain. It was noted that the level of hubeta-globin chain synthesis in the humanized IVSI-110 transgenic mouse was ~90% lower compared with hubeta-globin chain synthesis in the humanized normal hubeta-globin transgenic mouse on a similar background. These results suggest that this mouse model accurately recapitulates the beta-globin gene defect that is typical for IVSI-110 in beta-thalassemia patients.

In addition, there was a significant increase in the level of hubeta-globin chain in the mubetath-3/+ mice when compared with wild type transgenic mice as detected by HPLC globin chain separation and cellulose acetate gel electrophoresis (Fig. 3). This is thought to be because of post-translational events, where reduced synthesis of mubeta-globin chain in the mubetath-3/+ mouse results in reduced competitive binding between the hubeta-globin chain for mu{alpha}-globin resulting in an increase in the level of chimeric hemoglobin.

Detection of Aberrant Splicing—Splicing of hubeta-globin pre-mRNA in the humanized IVSI-110 mouse model was examined. RT-PCR was performed on RNA derived from whole blood, BM, and spleen from the humanized IVSI-110 mouse model and compared with RNA derived from blood isolated from a homozygous IVSI-110 beta-thalassemia patient (Fig. 4). PCR primers specific for the hubeta-globin gene were used to amplify the correctly spliced hubeta-globin mRNA spanning the 3'-end of exon 1 to the 5'-end of exon 2 regions. As a control we used a transgenic mouse containing the normal hubeta-globin (Fig. 4).


Figure 3
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FIGURE 3.
Analysis of hubeta-globin gene expression in transgenic mice. A, HPLC globin chains separation of wild type mouse (i), wild type mouse carrying normal hubeta-globin locus (ii), mubetath-3/+ mice carrying the normal hubeta-globin locus (iii), mubetath-3/th-3 mice carrying the normal hubeta-globin locus (iv), mubetath-3/+ mice carrying the IVSI-110beta-globin locus (v). The percentage of each globin chain expressed in transgenic mice is also indicated. B, cellulose acetate gel electrophoresis. Lane 1, wild type mouse Hb; lanes 2 and 3, mubetath-3/+ mice carrying the normal hubeta-globin locus; lanes 4 and 5, mubetath-3/th-3 mice carrying the normal hubeta-globin locus; lanes 6 and 7, mubetath-3/+ mouse carrying the IVSI-110beta-globin locus.

 
As determined by RT-PCR transgenic mice that containing the IVSI-110 beta-globin locus displayed one aberrantly spliced product. A detailed sequence analysis of cloned BM RT-PCR products revealed that the +110 mutation was recognized as the expected 3'-splice site. This aberrant splice product was identified in the BM, spleen, and blood of mice as well as in the blood of IVSI-110 beta-thalassemia patients. We noted quantitative differences in the amount of aberrant RT-PCR splice products amplified by PCR. In the BM and spleen, the +110 splice product was present in greater amounts compared with correctly spliced beta-globin mRNA, whereas in the blood of IVSI-110 mice and IVSI-110 beta-thalassemia patients the normal splice product was the predominate mRNA species. Presumably the difference in relative mRNA levels is because of mRNA instability.


Figure 4
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FIGURE 4.
Comparison of normal and aberrant spliced beta-globin mRNA by RT-PCR. A, resolution of normal and aberrant hubeta-globin RT-PCR products derived from mice and IVSI-110beta-thalassemia patients were performed on 2% Nusieve GTG-agarose. Lane 1, bone marrow from transgenic mouse carrying the normal hubeta-globin locus; lane 2, bone marrow from the IVSI-110 transgenic mice; lane 3, blood sample from the IVSI-110 transgenic mice; lane 4, blood sample from a human IVSI-110beta-thalassemia patient. B, schematic representation of the hubeta-globin exonic and intronic regions. Capital letters represent exon sequence and lowercase letters correspond to intron sequence. The strength of the 5'-splice site and 3'-splice site was determined using the Shapiro and Senapathy (SS) consensus matrix. The SS values of the natural donor and acceptor site sites as well as the 3'-IVSI-110 aberrant splice site are shown. C, sequence of cloned RT-PCR products derived from the BM of the IVSI-110 transgenic mice.

 
We compared the strength of the authentic and aberrant splice sites using the Shapiro and Senapathy (S&S) matrix (26). The +110 3ss scored 80.1, whereas the natural 3ss scored 84.5 (Fig. 4). Although the +110 3ss scored lower than the natural 3ss, it is not clear how the spliceosome can selectively discriminate against the authentic 3ss in preference for the weaker aberrant splice site. There are several studies, which report that RNA sequence elements bound by serine/arginine-rich (SR) family of proteins promotes the use of 5'- and 3'-splice sites through protein-protein and protein-RNA interactions. SR proteins can be either splicing activators or repressors, depending on where they bind to the pre-mRNA. Intronic binding of SR proteins has previously been reported to inhibit splicing (27). Because the IVSI-110 mutation promoted intronic aberrant splicing, the exonic splice enhancer algorithm ESEfinder was used to investigate whether the IVSI-110 mutation interfered with four putative SR splicing factors; SR protein SF2/ASF, SC35, SRp40, and SRp55 (28). Although other SR protein-binding sites have been reported, the ESEfinder predicted that the IVSI-110 mutation disrupted an SRp40 binding motif. At this stage, we can only speculate that the IVSI-110 mutation may have disrupted the activity of an SR protein repressor.

Full Blood Examination—A full blood examination was performed on transgenic mice carrying the normal or IVSI-110 hubeta-globin locus, including red blood cell count, total hemoglobin, hematocrit, erythrocyte indices, and reticulocyte counts. A summary of the results is shown in Table 1. The mubetath-3/+ mice were found to be anemic, as reflected in the marked decrease in red blood cells, hematocrit, and hemoglobin concentration. The reticulocyte counts in mubetath-3/+ mice were significantly higher when compared with wild type mice, indicating active erythropoiesis. When the mubetath-3/+ mice carry the normal hubeta-globin locus, the levels of red blood cells, hematocrit, and hemoglobin concentration increase to levels similar to wild type mice. We also noted that reticulocyte counts of mubetath-3/+ mice carrying the hubeta-globin locus decreased approaching wild type levels (Table 1). The low levels of hubeta-globin chain synthesis by the humanized IVSI-110 transgenic mouse failed to complement the hematological abnormalities in full. However, the small amount of hubeta-globin chain synthesis (~3%) by the humanized IVSI-110 mouse generated a small but measurable improvement in hematological values, which were statistically significant (Table 1).


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TABLE 1
Full blood examination Hemoglobin concentration (Hb), red blood cell counts (RBC), mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH), red cell distribution width (RDW), hematocrit (HCT), and reticulocytes (RET) are shown. The hematological values are expresses as means ± S.D. The differences between the mubetath-3/+ mice and the IVSI-110beta,mubetath-3/+ are statistically significant as measured by Student's t test. NS corresponds to not statistically significant (p > 0.05).

 

    DISCUSSION
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Transgenic mice containing large genomic fragments are increasingly being developed as in vivo model systems to facilitate our understanding of the biology and etiology of human diseases. With most of the human genome available as BAC clones, humanized BAC/YAC transgenic mice are increasingly the in vivo model systems of choice to map regulatory regions and to unravel the molecular mechanisms underlying developmental regulation and expression of functional genomic loci (2-6). With the growing demand for more sophisticated murine models to emulate human disease, BAC transgenics in combination with other gene knock-out technologies are seen as important experimental tools for disease modeling.

In this study, we demonstrated that mice transgenic for the human beta-globin locus, with the IVSI-110 G -> A mutation produce the same aberrant spliced product found in IVSI-110 beta-thalassemia patients. We noted quantitative differences in the level of aberrant +110 RT-PCR splice product between bone marrow and peripheral blood. Although the bone marrow sample showed more aberrant +110 RT-PCR splice product relative to normal beta-globin, the blood samples derived from IVSI-110 transgenic mice and IVSI-110 beta-thalassemia patients exhibited the reverse. We attribute the difference in relative ratios of RT-PCR products to mRNA instability. The +110 aberrant splice product generates a premature stop codon, which is known to trigger the nonsense-mediated mRNA decay process. This pathway degrades mRNAs containing premature termination codons generated by point mutations and/or splicing alterations, whose translation product may be detrimental to the cell (29).

Although large genomic transgenes are likely to contain all of the necessary regulatory elements required for tissue-specific and position-independent expression, mouse models using such transgenes do not always mirror the expression of the endogenous gene in humans (25, 30). The exact reason for this is not clear, but it may reflect the level of transcriptional compatibility between the two species.

We next investigated mubetath-3/+ carrying two copies of the IVSI-110 beta-globin locus (mubetath-3/+,IVSI-110beta+/0). Human beta-globin chain synthesis was found to be ~3% relative to total beta-globin chain synthesis. The low level of hubeta-globin chain synthesis by the mubetath-3/+,IVSI-110beta+/0 mouse failed to complement the hematological abnormalities. However, the small amount of hubeta-globin chain synthesis produced a small but measurable improvement in hematological values. When we compared the level of hubeta-globin chain synthesis between the normal and IVSI-110 hubeta-globin locus transgenic mice, the IVSI-110 mutation produced a 90% reduction in human beta-globin synthesis. Interestingly, this 90% reduction of hubeta-globin synthesis in mice is equivalent to the reduction of hubeta-globin chain observed in IVSI-110 beta-thalassemia patients.

Despite the many mutations causing alternative splicing identified to date, the reasons why mutations vary from mild to severe in their effects are poorly understood. Splicing relies on the correct recognition of cis-elements (the 5'- and 3'-splice sites and the branch point), but these are not sufficient to define exon-intron boundaries. Additional cis-acting elements such as exonic or intronic splicing enhancers and silencers significantly influence normal and alternative splice site selection. These elements are recognized by trans-acting factors, including the SR proteins and human ribonucleoproteins (hnRNP) (27). We can only speculate that the IVSI-110 mutation may have disrupted the binding of an intronic silencer, reducing exon definition and allowing the recruitment of the splicing machinery to upstream aberrant 3'-splice sites.

Kole and colleagues (32) were the first to attempt therapeutic modulation of alternative splicing by targeting antisense oligonucleotides (AO) to the aberrant splice site to restore splicing specificity. This strategy prevents the selection of the aberrant splice site, thus favoring the recognition of the correct splice site by the splicing machinery. By using in vitro and cellular assays, they demonstrated inhibition of aberrant splicing in two common beta-thalassemia mutations, IVSII-654 and IVSII-705 (31, 32). In the case of the IVSI-110 mutation, efficient inhibition of aberrant splicing was achieved not by targeting the aberrant splice site, but the natural branch point sequence of the first intron (32). More recently, AO have been shown to correct aberrant splicing in vivo using a transgenic mouse model in which enhanced GFP expression was interrupted by an intron containing IVSII-654 splicing mutation (33). A systemic delivery of AO restored enhanced GFP expression in all tissues that absorbed AO, providing evidence that AO can be used in vivo to restore normal splicing. They found correction of aberrant splicing was variable for different tissues, but this may reflect the levels of transgene expression. Although this animal model represents an excellent in vivo model system for the investigation of delivery and activity of various AO chemistries, it is not clinically relevant with respect to anemia and extramedullary erythropoiesis.

An alternative approach to restoring splicing specificity, lost through mutations, would be the use of bifunctional AOs. By combining an antisense-targeting domain and peptide-recruiting domain it may be possible to recruit specific splicing factors that might influence splicing in a positive or negative manner. This approach has recently been shown to specifically restore wild type splicing when directed to defective BRACA1 or SMN2 pre-mRNA (34, 35).

In this study, we showed that this humanized IVSI-110 mouse model recapitulates the splicing defect that is typical for beta-thalassemia patients carrying the IVSI-110 mutation. We showed that the humanized transgenic mouse mubetath-3/+, carrying the IVSI-110 hubeta-globin locus, represents a physiologically relevant in vivo model system, which can provide a unique opportunity for the development and evaluation of various therapeutic strategies such as AO and pharmacological-based therapies.


    FOOTNOTES
 
* This work was supported by grants from the National Health and Medical Research Council (NHMRC) of Australia, the Brockhoff Foundation, the Ronald Geoffrey Arnott Foundation, and the Thalassemia Society of Victoria, Australia. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. Back

{dagger} Panayiotis A. Ioannou died in April 2005. This work was inspired by and led by him, and his colleagues dedicate this research to his memory. Back

1 To whom correspondence should be addressed. Tel.: 613-8341-6233; Fax: 613-8341-6212; E-mail: jim.vadolas{at}mcri.edu.au.

2 The abbreviations used are: DAPI, 4',6-diamidino-2-phenylindole; RT-PCR, reverse transcription PCR; HPLC, high-pressure liquid chromatography; SR, serine/arginine-rich; AO, antisense oligonucleotide; BM, bone marrow. Back


    ACKNOWLEDGMENTS
 
We thank Dr. Kerry Fowler, Sophie Gazeas, and all the staff of the Disease Model Unit, Murdoch Childrens Research Institute, for their expert support in this project. We also thank Dr. Marina Kleanthous at The Cypriot Institute of Neurology and Molecular Genetics, for providing RNA samples from beta-thalassemia IVSI-110 patients.



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P. Moi and M. Sadelain
Towards the genetic treatment of {beta}-thalassemia: new disease models, new vectors, new cells
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