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J. Biol. Chem., Vol. 281, Issue 2, 1008-1015, January 13, 2006
The cis-Regulatory Element Gsl5 Is Indispensable for Proximal Straight Tubule Cell-specific Transcription of Core 2
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| ABSTRACT |
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-1,6-N-acetylglucosaminyltransferase (core 2 GnT) gene. The core 2 GnT gene has six exons and produces three alternatively spliced transcripts. Gsl5 regulates only the expression of the kidney-type mRNA, which is transcribed from the most 5'-upstream exon. By introducing a 159-kb bacterial artificial chromosome (BAC) clone that carries the mouse core 2 GnT gene and its 5'-upstream region into DBA/2 mice that carry a defective Gsl5 allele, we were able to rescue the deficient phenotype. The BAC clone was subsequently engineered to replace the core 2 GnT gene with the sequence of enhanced green fluorescent protein (EGFP) as a reporter by an inducible homologous recombination system in Escherichia coli. The transgenic mice derived from the modified BAC clone expressed EGFP in the kidney, which suggests that the candidate Gsl5 is in the 5'-upstream region of the core 2 GnT gene. Sequence analysis of the 5'-upstream regions of the BAC clone and DBA/2 genomic DNA revealed a candidate sequence for Gsl5 at about 5.5 kb upstream of exon 1. This sequence consisted of eight repeats of two GT-rich units in the wild-type mice, whereas it consisted of only one pair of GT-rich units with a minor modification in the DBA/2 mice. Transgenic mice produced with the EGFP reporter gene construct that included this candidate sequence expressed EGFP exclusively in the proximal straight tubular cells of the kidney. These results indicated that this unique repeat is indeed the Gsl5, and it is a cis-regulatory element responsible for proximal straight tubule cell-specific transcriptional regulation. | INTRODUCTION |
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We focused on the polymorphic expression of kidney glycolipids among inbred strains of mice, and we found a single autosomal gene that controls the expression of a glycolipid (Gal
1-4(Fuc
1-3)GlcNAc
1-6(Gal
1-3)GalNAc
1-3Gal
1-4Gal
1-4Glc
1-ceramide (GL-Y)2) through the regulation of
-1,6-N-acetylglucosaminyltransferase (
6GlcNAc-T) activity (4). We named this gene Gsl5 and mapped the Gsl5 locus to chromosome 19 (5). DBA/2 and other several strains of mice carry a recessive allele for Gsl5, which originated from Mus musculus, Asian subspecies (6). We have made the following observations regarding Gsl5. 1) The amino acid sequence deduced from the cDNA sequence of Gsl5-controlled
6GlcNAc-T is identical to that of the mouse core 2
6GlcNAc-T (core 2 GnT). 2) The mouse core 2 GnT gene produces three alternatively spliced transcripts, and Gsl5 controls only one of these, transcribed from exon 1, which is located closest to the 5' end. 3) Gsl5 controls the activity of
6GlcNAc-T, whose substrates are the glycolipid Gal
1-3GalNAc
1-3Gal
1-4Gal
1-4Glc
1-ceramide (GL-X) and the oligosaccharide Gal
1-3GalNAc
- and
-p-nitrophenyl derivatives. 4) In addition to the glycolipid, glycoproteins that bear the core 2-LeX epitope (Gal
1-4(Fuc
1-3)GlcNAc
1-6(Gal
1-3)GalNAc-) are regulated by Gsl5. 5) Gsl5 controls the level of mRNA that encodes
6GlcNAc-T in a kidney proximal tubule cell-specific manner (7-9).
We postulated that Gsl5 might be a kidney-specific element in transcriptional regulation. It appeared to be an excellent candidate for the analysis of tissue-specific regulation mechanisms. However, the molecular basis of Gsl5 could not be addressed easily, as cultured cells that maintain the expression of Gsl5-regulated core 2 GnT are not available at present. In addition, in our preliminary experiments, even primary cultures of mouse proximal tubule cells lost the expression of kidney-specific core 2 GnT mRNA within 48 h. These results compelled us to use an in vivo genetic approach. We introduced a clone of a bacterial artificial chromosome (BAC) containing the entire core 2 GnT gene derived from a dominant mouse strain into Gsl5-deficient DBA/2 mice, and we tested whether the wild-type BAC clone was able to rescue the defective phenotype of the DBA/2 mice. One clone rescued the defective phenotype and produced GL-Y glycolipid and glycoproteins with the core 2-LeX epitope in the kidneys of transgenic mice. In addition, we were able to modify the BAC clone by homologous recombination and to define the region of the candidate sequence.
Here we present for the first time evidence that Gsl5 is a unique cis-regulatory element that controls kidney proximal tubular cell-specific transcription.
| EXPERIMENTAL PROCEDURES |
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The closed circular form of BAC DNA was purified using an alkaline lysis and cesium chloride gradient ultracentrifugation protocol (10). After overnight dialysis, the DNA was diluted to a concentration of 3 ng/µl in TE buffer (10 mM Tris-HCl (pH 7.5), 0.1 mM EDTA) and microinjected into pronucleus stage oocytes isolated from DBA/2 mice. The microinjected oocytes were transplanted into pseudo-pregnant ICR mice. The resulting mice were screened by PCR analysis with PCR primers, BAC-1 and BAC-2, for the BAC vector using genomic DNA purified from tail biopsies. The primer sequences are shown in Table 1. One transgenic line was established by mating the founder mouse and DBA/2 mice.
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Kidney neutral glycolipids were isolated and identified as described previously (6). Briefly, total glycolipids were extracted from kidneys in a chloroform/methanol mixture. The neutral glycolipid fraction was eluted from a DEAE-Sephadex A-25 column and subjected to mild alkaline treatment. After neutralization, the neutral glycolipid fractions were desalted on a Sephadex LH-20 column and analyzed by TLC. Glycolipids were visualized by spraying the TLC plates with an orcinolsulfuric acid reagent and heating at 110 °C.
Microsomal fractions of mouse kidneys were prepared as described previously (9). Protein content was determined using the BCA reagent (Pierce). The protein samples (20 µg) were applied to an SDS-polyacrylamide 3-15% gradient gel, electrophoresed, and blotted to an Immobilon-P membrane (Millipore Corp.). The IgM monoclonal antibody SA024, which recognizes the carbohydrate epitope Gal
1-4(Fuc
1-3)GlcNAc
1-6(Gal
1-3)GalNAc, and horseradish peroxidase-conjugated anti-mouse IgM antibody were used. Peroxidase activity was detected with the ECL kit (Amersham Biosciences).
Modification of the BAC Clone by Homologous Recombination in Escherichia coliThe BAC clone that contained Gsl5 was modified to replace the core 2 GnT gene with the EGFP reporter gene using an inducible homologous recombination system, GET recombination, in E. coli (11).
The 6578-bp pGETrec plasmid, which contains the E. coli recE and recT genes and the bacteriophage
gam gene in a polycistronic operon (donated by Dr. P. A. Ioannou, The Royal Children's Hospital, Melbourne, Australia), was electroporated into E. coli DH10B that carried the BAC clone. The DH10B cells that carried both the BAC clone and pGETrec were prepared for recombination. The expression levels of the recE, recT, and gam genes were induced by the addition of L-arabinose to a final concentration of 0.2% (w/v) for an additional 40-min incubation. The cells were harvested and made electrocompetent (10).
The PCR product that contained the EGFP/kanr cassette was amplified using the GNT-egfp and GNT-kana primers (Table 1). In Table 1, the capital letters (50 nt) correspond to the homology-targeting arms of the genomic sequences, and the lowercase letters refer to those used for primer amplification of the EGFP/kanr cassette. The pEGFP-N3 vector (Clontech) was used as the template. The purified PCR product (300-500 ng) was then electroporated into the DH10B cells that carried both the BAC clone and pGETrec (12). PCR screening was performed to identify recombinant clones using the combination of primer sets designed for the sequences of the BAC clone and the inserted PCR product.
We obtained one recombinant clone in which the EGFP/kanr cassette replaced the core 2 GnT gene. The modified BAC DNA was digested with SacII or SalI and analyzed by pulse field gel electrophoresis (PFGE) (10). The closed circular form of the recombinant BAC DNA was purified and microinjected into pronucleus stage oocytes obtained from C57BL/6 mice, as described above for the original BAC clone.
To identify transgenic mice, PCR analysis was performed with the GNT-22 and EGFP-R primers. The 707-bp fragment of the EGFP gene was amplified by PCR using the EGFP-1 and EGFP-6 primers with kidney total RNA as the template. To ensure that the PCR products were not derived from some contamination of the genomic DNA, a negative control reaction without reverse transcriptase was performed.
Three transgenic mouse lines were established by mating each founder animal with C57BL/6 mice. An MZ FLIII fluorescence stereomicroscope (Leica) with a filter for green fluorescent protein was used for the histological observations.
Sequencing of the BAC Clone and the Corresponding DBA/2 Genomic DNAThe BAC clone was digested with BssHII and SalI. A 40-kb fragment from the 5' end of the clone, which included exon 1 and intron 1 of the core 2 GnT gene, was subcloned and sequenced using the BigDye Terminator cycle sequencing kit (Applied Biosystems) and the ABI PRISM 377 sequencer (Applied Biosystems). PCR products that corresponded to those of the BAC clone were obtained from the DBA/2 genomic DNA and were analyzed.
Gsl5-EGFP TransgenesisUsing the BAC clone that included the core 2 GnT gene as the template, a PCR product was amplified with the GNT-103 and GNT-170Xho primers and was digested with XhoI. Another PCR product, which contained exon 1 of the core 2 GnT gene and its immediate 5'-flanking region, was amplified with the GNT-22Xho and GNT-23Hd primers and was digested with XhoI and HindIII. These fragments were purified using the QIAquick gel extraction kit (Qiagen). The pEGFP-N3 plasmid was digested with HindIII and DraIII. The fragment that included the EGFP gene was ligated with the two PCR fragments described above. The Gsl5-EGFP construct was then amplified by PCR using the GNT-103 and EGFP-3 primers with the ligated DNA as template, purified using the QIAquick gel extraction kit, and microinjected at a concentration of 3 ng/µl in TE buffer into pronucleus stage oocytes from C57BL/6 mice. A Gsl5-EGFP transgenic mouse was identified and established by mating the founder animal with C57BL/6 mice.
Cryostat sections (10 µm thick) from unfixed frozen kidney samples of the transgenic mouse were placed on poly-L-lysine-coated slides, dried for 5 min at room temperature, and then exposed for 16 h at -20 °C to the vapor of formaldehyde produced from a filter paper soaked in 37% formaldehyde solution in a tightly closed plastic box (13). After fixation, the sections were washed with TBS-Ca buffer (50 mM Tris-HCl (pH 7.6), 150 mM NaCl, 1 mM CaCl2). An MZ FLIII fluorescence stereomicroscope (Leica) with a filter for green fluorescent protein was used. Then the sections were incubated, after preincubation in TBS-Ca buffer containing 10% goat serum, with rabbit polyclonal antibody against keyhole limpet hemocyanin-conjugated C-terminal peptide, (C)TATEDTFKDTANLVKEDSDV, of mouse megalin which is a member of low density lipoprotein receptor and is localized at the proximal tubule cells (14), and stained with goat anti-rabbit IgG conjugated with Alexa Fluor 543 (Molecular Probes). The stained sections were observed under an LSM510 laser scanning confocal microscope (Carl Zeiss).
For Western blotting of the EGFP protein, kidney homogenates were subjected to SDS-PAGE (10% polyacrylamide gel). The affinity-purified anti-EGFP monoclonal antibody JL-8 was purchased from Clontech. The secondary antibody was peroxidase-conjugated anti-mouse IgG (Santa Cruz Biotechnology), and the ECL Advance system (Amersham Biosciences) was used for visualization.
| RESULTS |
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The rBACegfp construct was introduced into mice, generating three transgenic lines (Fig. 3A). RT-PCR analysis showed that each rBACegfp transgenic line expressed EGFP mRNA (Fig. 3B) in the kidneys. Fluorescence stereomicroscopy detected EGFP fluorescence in the corticomedullary region of the kidney (Fig. 3C). EGFP was not detected in the kidney medulla.
Sequencing of the BAC Clone and the Corresponding DBA/2 Genomic DNAThe alignment of the 24-kb sequence, which includes the region 5'-upstream of the core 2 GnT gene in BAC367O1, and the DBA/2 genome revealed five deletions and four insertions of >20 nt as well as a number of single nucleotide polymorphisms in the DBA/2 genome (data not shown). Two exons of the riboflavin kinase (Rfk) gene were detected at the 5' end of the BAC clone in the reverse direction, which represents the border of the core 2 GnT gene.
There was no significant difference in the sequences of exon 1 and its immediate flanking region extending up to -400 bp of the core 2 GnT gene between BAC367O1 and the DBA/2 genome (AB219562
[GenBank]
and AB219563
[GenBank]
). The TATA box was detected in both sequences at about 30 bp upstream of exon 1, where the kidney-type mRNA is transcribed as reported in previous paper (8). We found that DBA/2 contained an
350-bp deletion at 5.5 kb upstream of exon 1 (AB219561
[GenBank]
). The corresponding region of BAC367O1 included a unique tandem repeat (AB219560
[GenBank]
) (Fig. 4A), which consisted of a GT-rich, 16-nt unit (A,TGTGTGTGTGTATGTA) plus a GT-rich, 36-nt unit (B, TGGGTTTGTGTGTATGTGTT-TGTGTGGTTATATGTA). BAC367O1 contained these units repeated eight times: A-B-A'-B-A-B-B-A-B'-A-B'-A-B-A-B-A', where A' (TGTGTGTGTATGTA) is 2 nt shorter than A, and B' has a C substitution for the T of TGGGTTT...in B. In contrast, DBA/2 had only one A''-B'', in which A'' (TGTGTGTGTTAGTGTATGTA) is 4 nt longer than the wild-type A, and B'' has an A substitution for the G of TGGGTTTGTGTGTATG... in B. We performed PCR analysis to determine the correlation between this tandem repeat and the expression of GL-Y in the inbred strains of mice that lacked GL-Y in their kidneys, i.e. MSM, JF1, BLG2, KJR, CHD, and SWN. All six strains had the same deletion. Mus spretus, which is the closest species to M. musculus, which does not express GL-Y, also had this deletion. On the other hand, A/Wy, BALB/c, C57BL/6, and PGN/2 mice that expressed GL-Y in their kidneys had PCR products of the same length as that of BAC367O1 (Fig. 4B). These correlations support the notion that this deletion is a candidate for the recessive Gsl5.
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EGFP fluorescence was detected in the proximal tubule cells in the corticomedullary region of the kidney (Fig. 6A). EGFP was not detected in either the medulla or outer cortex regions. Confocal microscopy at a higher magnification demonstrated that EGFP was localized at the proximal straight tubule cells, and megalin distribution at the luminal side of proximal tubule cells supported the EGFP localization (Fig. 6B). Western blotting with the anti-EGFP antibody confirmed that EGFP protein was expressed in the kidneys of transgenic mice (Fig. 6C). Thus, we were able to establish a transgenic mouse line that expresses EGFP in the kidneys.
Taken together, these results demonstrate that the Gsl5-EGFP construct contains a kidney-specific cis-element and that A-B-A''-B-A-B-B-A-B'-A-B'-A-B-A-B-A' is absolutely required for the transcription of the core 2 GnT gene in a proximal straight tubule cell-specific manner.
| DISCUSSION |
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library of the mouse genome. This clone included about 4.5 kb of the 5'-upstream region of the transcriptional start site of kidney-type cDNA and had a TATA box-like sequence at about -30 nt. However, in our preliminary promoter assays using primary cultures of mouse kidney proximal tubule cells and luciferase as the reporter, we did not find any promoter activity in the 5'-upstream region of exon 1 of the core 2 GnT gene, even up to about -4500 nt (data not shown). As the primary culture rapidly lost the expression of kidney-type mRNA, promoter activity was assayed although mRNA expression was still maintained. The 5'-upstream region of the 4.5-kb fragment seemed to be insufficient. To investigate further the longer 5'- and 3'-flanking regions of the core 2 GnT gene, we used BAC-mediated transgenesis. BAC clones can stably maintain DNA fragments of up to 300 kb (16) and are known to be useful in identifying cis-regulatory elements that lie far from the coding region (17, 18). The BAC clone BAC367O1, which contains the core 2 GnT gene, was able to rescue the defective phenotype of DBA/2 in terms of the kidney-specific transcription of the gene, which suggests that the Gsl5 locus that plays a key role in the transcriptional regulation of core 2 GnT is contained within this clone. Exon 1, which is transcribed in a kidney-specific manner, is located the farthest 5'-upstream, and the Gsl5-deficient DBA/2 mice retain the ubiquitous-type mRNA, which is transcribed from exon 1', located 17 kb downstream of exon 1. Gsl5 should lie either 5'-upstream of exon 1 on BAC367O1 or in intron 1 between exons 1 and 1'. BAC engineering using the GET recombination system excluded the possibility that Gsl5 is in intron 1. The engineered BAC clone, rBACegfp, has the EGFP gene inserted between exon 1 and the 3' end of the core 2 GnT gene, and it expresses EGFP in a kidney-specific manner, despite lacking the region between intron 1 and exon 3 of the core 2 GnT gene. Therefore, Gsl5 is located 5'-upstream of the 24-kb fragment. As a reporter, EGFP has the advantage of being directly visualized in vivo with high sensitivity and without any further treatments (19).
We analyzed the 24-kb upstream region of exon 1 and the corresponding genomic DNA sequence of DBA/2 mice. A candidate for Gsl5 was located about 5.5 kb upstream of exon 1, where the unique sequence was tandemly repeated eight times in BAC367O1. However, a similar sequence was repeated only once in the DBA/2 genome. We found binding sites for several known trans-acting factors, such as CCAAT/enhancer binding protein (C/EBP), human runt-factor AML-1 (AML-1), mouse HFH-8 (HNF-3/Fkh homolog-8), sex-determining region Y gene product (SRY), yeast RAP1 (repressor/activator protein 1), and Drosophila CF2-II (chorion transcription factor), in the repeated sequence by means of a computer search of GenomeNet using the MOTIF program. Only five repeats are described in the mouse genome sequences in the EMBL/GenBank/DDBJ databases, and the comment of "unresolved tandem repeat" is annotated for that region (AC147369 [GenBank] ). Nevertheless, the present study of PCR product length (Fig. 4B) and our sequencing data confirm that there are eight repeats in the BAC clone and in the genomes of several different strains of mice.
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-hydroxylase (20) and
-glutamyl transpeptidase type II (21) are mainly expressed in kidney proximal tubules, and their cis-acting elements have been reported as TCF-1 (ternary complex factor-1) and AP2 (glucocorticoid-response element) in the 5'-flanking region close to the transcription start site. The glucose transporter Sglt2 promoter, consisting of the first exon, the first intron, and a part of the second exon, was successfully used for establishing a transgenic mouse carrying the Sglt2 promoter-Cre recombinase and was applied to make transgenic mice with the proximal tubule cell-specific expression of
-galactosidase (22). However, there has been no report on the unique GT-rich repeat that includes cis-elements for several binding proteins in an overlapping arrangement. We have named this the Gsl5 regulatory element. The repeated binding sites for the trans-acting factors may be critical for highly enhanced transcription, like that of the kidney-type core 2 GnT. This type of tandem repeat in transcriptional enhancers has been reported in fungi, in which it mediates fungicide resistance (23). The tandem repeat in combination with the TATA box-like sequence in the immediate 5'-flanking region of exon 1 may also be critical and may represent a useful tool for the expression of genes of interest in mouse kidney proximal tubules. In our preliminary gel-shift assay, both the wild-type and deficient DBA/2 mice had a binding protein with specificity for this repeat in their kidneys (data not shown). Further analysis is required to determine which trans-acting factors are involved in mouse kidney proximal straight tubule cell-specific regulation.
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Reports on in vivo tissue-specific transcriptional regulation related to glycobiology are very limited, and successful demonstration has been reported for the mouse
-1,4-galactosyltransferase I gene (24-26). This gene produces one housekeeping and two tissue-specific transcripts. One of the two is a mammary gland-specific transcript, which is regulated by a target region for multiple factors including AP2, a mammary gland-specific form of CTF/NF, SP1, and a negative regulatory factor (24). The other is related to a male germ cell-specific regulation, which includes two putative CRE-like motifs (25). Then a unique 14-bp regulatory element located 16 bp upstream of the transcriptional start site was determined to be essential for the regulation of late pachytene spermatocyte-specific transcript and was named TASS-1 (transcriptional activator in late pachytene spermatocytes and round spermatids 1) (26). TASS-1 has been suggested to be a novel member of the Ets family of transcription factors. Although the tissue-specific glycan structures of glycolipids and glycoproteins have been analyzed extensively, most of the molecular mechanisms responsible for these structures remain to be uncovered. Our present study reveals a molecular mechanism that is specific to mouse proximal straight tubules. The transgenic experiments used in this study are evidently essential methods in elucidating these molecular mechanisms.
Core 2 GnT catalyzes the transfer of the
-GlcNAc residue to Gal
1-3GalNAc- and plays a key role in creating the branching core 2 structure, GlcNAc
1-6(Gal
1-3)GalNAc-. In addition, the formation of the core 2 structure is essential for further elongation of the carbohydrate chains. Three different core 2
-1,6-GlcNAc transferases, termed core 2 GnT-I, -II, and -III, have been reported in humans (27-29). The mouse core 2 GnT is a homolog of human core 2 GnT-I. We have described two alternatively spliced transcripts in the mouse (8), whereas the human core 2 GnT-I gene has five mRNAs that are different in their 5'-untranslated regions (30). Their 5'-terminal exons are expressed in a tissue-specific manner, although none of the transcripts are restricted to the kidney. Therefore, the regulation of core 2 GnT-I by Gsl5 is mouse-specific, because it does not seem to be conserved among other mammals.
Transgenic mice that express the core 2 GnT-I gene under the control of the T cell-specific promoter lck exhibit a reduced immune response in delayed type hypersensitivity (31), and core 2 GnT-I-targeted mice exhibit a restricted phenotype with neutrophilia and partial deficiency of selectin ligands (32). The expression of sialyl-LeX, which is one of the physiologically relevant selectin ligands, is controlled by fucosyltransferase FucT-VII during lymphocyte differentiation or activation (33), and core 2 GnT-I, but not GnT-II or GnT-III, is also required to express sialyl-LeX on glycoproteins in human precursor B cells (15). These reports suggest physiological functions for core 2 GnT-I in the immune system. However, the functions of proximal straight tubule cell-specific and mouse-specific regulation of core 2 GnT-I gene are not clear.
DBA/2 mice that lack the kidney-type mRNA of core 2 GnT-I, the GL-Y glycolipid, and glycoproteins that bear the core2-LeX carbohydrate structure do not exhibit any kidney dysfunction under normal conditions. It is possible that the functional significance of the proximal straight tubule cell-specific enhancement of core 2 GnT mRNA could be revealed under certain stress conditions.
In conclusion, we have used the combination of BAC engineering, in vivo promoter assays, and transgenesis to characterize Gsl5, which is composed of a unique tandem repeat, as a cis-regulatory element that is essential for kidney proximal straight tubule cell-specific transcription of the mouse core 2 GnT gene.
| FOOTNOTES |
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* The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. ![]()
1 To whom correspondence should be addressed: RIKEN Frontier Research System, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan. Tel.: 81-48-467-9615; Fax: 81-48-462-4692; E-mail: aksuzuki{at}riken.jp.
2 The abbreviations used are: GL-Y, Gal
1-4(Fuc
1-3)GlcNAc
1-6(Gal
1-3)GalNAc
1-3Gal
1-4Gal
1-4Glc
1-ceramide; core 2 GnT, core 2
-1,6-N-acetylglucosaminyltransferase; BAC, bacterial artificial chromosome; EGFP, enhanced green fluorescent protein; PFGE, pulse field gel electrophoresis; RT, reverse transcription; GL-X, Gal
1-3GalNAc
1-3Gal
1-4Gal
1-4Glc
1-ceramide; LeX, Lewis X antigen; nt, nucleotide. ![]()
3 C. E. Warren, GenBankTM accession number MMU19265. ![]()
| ACKNOWLEDGMENTS |
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| REFERENCES |
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