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J. Biol. Chem., Vol. 281, Issue 21, 14823-14832, May 26, 2006
SNARE Complex Zero Layer Residues Are Not Critical for N-Ethylmaleimide-sensitive Factor-mediated Disassembly*![]() ![]() ![]() ![]() 1
From the
Departments of
Received for publication, November 28, 2005 , and in revised form, February 28, 2006.
Membrane-anchored SNAREs assemble into SNARE complexes that bring membranes together to promote fusion. SNARE complexes are parallel four-helix bundles stabilized in part by hydrophobic interactions within their core. At the center of SNARE complexes is a distinctive zero layer that consists of one arginine and three glutamines. This zero layer is thought to play a special role in the biology of the SNARE complex. One proposal is that the polar residues of the zero layer enable N-ethylmaleimide-sensitive factor (NSF)-mediated SNARE complex disassembly. Here, we studied the effects of manipulating the zero layer of the well studied synaptic SNARE complex in vitro and in vivo. Using a fluorescence-based assay to follow SNARE complex disassembly in real time, we found that the maximal rate at which NSF disassembles complexes was unaffected by mutations in the zero layer, including single replacement of the syntaxin glutamine with arginine as well as multiple replacement of all four layer residues with non-polar amino acids. To determine whether syntaxin with arginine instead of glutamine in its zero layer can support SNARE function in vivo, we introduced it as a transgene into a Caenorhabditis elegans syntaxin-null strain. Mutant syntaxin rescued viability and locomotory defects similarly to wild-type syntaxin, demonstrating that SNARE complexes with two glutamines and two arginines in the zero layer can support neurotransmission. These findings show that residues of the zero layer do not play an essential role in NSF-mediated disassembly.
Intracellular membrane trafficking depends on the ordered formation and consumption of transport intermediates and requires that membranes fuse with each other in a tightly regulated and highly specific manner. Membrane-anchored helical proteins known as SNAREs2 have emerged as central players in membrane fusion. SNAREs assemble into coiled coil-like complexes that are thought to pull membranes together and thereby promote fusion (1-4). After fusion, SNARE complexes must be disassembled to regenerate individual SNAREs for use in subsequent fusion reactions. Proteins responsible for disassembly are the AAA+ (ATPase associated with a variety of cellular activities) protein NSF and its adaptor protein -SNAP (5-7). Because of the critical role that SNARE complexes play in membrane fusion, understanding how their assembly and disassembly are controlled is critical to describing how cellular membrane trafficking is regulated.
SNAREs are defined by the presence of one or more copies of a conserved 60-70-amino acid "SNARE motif" (3, 8, 9). SNARE motifs are usually adjacent to membrane-anchoring sequences and spontaneously assemble into coiled coil-like structures containing four helices aligned in parallel with each other (10-12). Functional SNARE complexes consist of one each of four distinct groups of SNAREs defined by sequence-based profiling (9). Crystal structures of two SNARE complexes reveal characteristic packing in the mostly hydrophobic core of the complex (11, 12). The core consists of 16 layers of interacting residues. At the midpoint is a unique layer containing polar rather than hydrophobic residues, typically one arginine and three glutamines. This layer is referred to as the zero layer. Its residues are hydrogen-bonded to each other and sequestered from solvent by hydrophobic layers on either side. The zero layer is the most distinctive feature common to all SNARE complexes and has therefore attracted much attention. It provides the basis for naming the four groups of SNARE motifs as QA-, QB-, QC-, and R-SNAREs to reflect both the residue that each SNARE contributes to the zero layer and the position that it occupies in an assembled complex (8, 9, 13). The founding members of each of these groups are the SNAREs of the synaptic SNARE complex, with syntaxin-1 providing the QA helix; the N- and C-terminal ends of SNAP-25 providing the QB and QC helices, respectively; and synaptobrevin (vesicle-associated membrane protein) providing the R helix.
Various ideas for how polar zero layer residues might impact SNARE function have been put forward. One attractive possibility is that favorable interactions among the polar residues within the layer ensure that SNARE motifs assemble in register with respect to each other and the membranes in which they are anchored (11, 14). The zero layer may also help to specify the oligomeric state of the complex. It could provide a "half-way" point during complex assembly, separating formation of "trans-SNARE complexes" between membranes into two phases (15). Finally, the zero layer might serve as a starting point for NSF/ A number of mutagenesis studies have investigated how manipulating zero layer residues affects SNARE-dependent processes in vivo using the yeast Saccharomyces cerevisiae as a model system (17-21). A general conclusion from these experiments is that trying to accommodate a second arginine in the zero layer perturbs SNARE complex function, whereas eliminating all arginines is less disruptive. The disruption caused by a second arginine can be overcome by changing the original arginine to glutamine (17-19). This demonstrates that the number (one versus two) rather than the absolute position of the arginine is what matters for complex function. Whether the overall presence of a polar zero layer is functionally important has not been examined in vivo because all mutant complexes studied to date in yeast retain at least a partially polar zero layer. Contributions of individual core residues, including those of the zero layer, to the function of the synaptic SNARE complex have been extensively examined using in vitro assays of PC12 cell secretory granule exocytosis (22-24) as well as in more limited ways in a variety of living preparations (25-29). For in vitro exocytosis studies, analysis has been limited to changes in the SNAP-25 QB and QC helices because these do not need to be anchored to the membrane to function. Not surprisingly, mutations of hydrophobic core residues in either the QB or QC helix disrupt the apparent stability of the SNARE complex as well as its ability to promote exocytosis (22-24). When examined in living preparations, mutations of hydrophobic layer residues in syntaxin or synaptobrevin have been similarly disruptive (25-27). Somewhat surprisingly, changes in the residue(s) that SNAP-25 brings to the zero layer have relatively minor effects on in vitro secretory granule exocytosis, particularly when compared with the effects of mutations in adjacent hydrophobic layers that have similar effects on apparent complex stability (22-24). SNAP-25 zero layer mutants introduced into living cells again have little or no effect on fusion per se (28, 29), although expressing SNAP-25 with both its glutamines changed to leucine slows the kinetics of vesicle pool refilling in adrenal chromaffin cells (29). Because of the minimal effects of synaptic SNARE complex zero layer mutations on secretory granule exocytosis, Scheller and co-workers (16) investigated whether these changes might instead affect a SNARE reaction not directly involved in fusion such as NSF-mediated complex disassembly. They found that disassembly appeared to be inhibited by some zero layer mutations, with the most dramatic effects seen when the QA (syntaxin) zero layer glutamine was changed to any other amino acid (16). Neher and co-workers (29) considered slowing of disassembly as a possible explanation for the delay in pool replenishment caused by expressing the SNAP-25 zero layer leucine mutant in adrenal chromaffin cells, but dismissed it based on unpublished data showing that a SNARE complex with four leucines in its zero layer was disassembled in vitro as fast or faster than the wild-type complex. Disassembly of SNARE complexes in yeast expressing zero layer mutants has not been directly examined, but the range of phenotypes observed (17-21) and, in particular, the ability to restore function by rotating the arginine within the layer indicate that a general requirement for a QA glutamine in disassembly is unlikely. To understand more specifically how NSF disassembles SNARE complexes, we were interested in further exploring the proposed role of the zero layer in disassembly of the synaptic SNARE complex. Here, we revisited the question of how manipulating the zero layer affects complex disassembly in vitro and also investigated how a zero layer mutation in syntaxin affects the normal function of this QA-SNARE in vivo in Caenorhabditis elegans. We found that changes in the zero layer, either single replacement of the syntaxin glutamine with arginine or multiple replacement of all four layer residues with non-polar amino acids, did not significantly affect NSF-mediated disassembly in vitro. Furthermore, replacing the syntaxin glutamine with arginine did not impair syntaxin function in C. elegans. This suggests that, at least in the case of the synaptic SNARE complex, there is no special role for polar zero layer residues and, in particular, for the syntaxin glutamine in NSF-mediated disassembly. Our results confirm that the function of the synaptic SNARE complex is remarkably tolerant to changes in its zero layer and open the way to further studies aimed at defining the contribution of this layer to the normal functioning of SNARE complexes.
Protein Expression VectorspET28-CFP and pET28-YFP vectors were created by moving enhanced CFP or YFP (Invitrogen) from pECFP-N1 or pEYFP-N1, respectively, as a BamHI-NotI fragment into pET28a. His6-syntaxin-CFP was created by introducing residues 1-265 of rat syntaxin-1a as a NdeI-AgeI fragment into pET28a-CFP. The resulting construct contains a His6 tag, syntaxin-1a, and CFP with residues VPVAT between syntaxin and CFP. The syntaxin also contains a C145S mutation. His6-synaptobrevin-YFP was similarly constructed by introducing residues 1-96 of rat synaptobrevin II into the NdeI-BamHI fragment of pET28a-YFP with residues VDPPVAT between synaptobrevin and YFP. All fragments were generated by PCR using oligonucleotide primers containing the indicated restriction sites. The sequences of all constructs were confirmed by ABI PRISM BigDye terminator cycle sequencing (Applied Biosystems) at the Protein and Nucleic Acid Chemistry Laboratory of the Washington University School of Medicine. SNAP-25b in pHO4d, syntaxin-(1-265) in pHO4d, and synaptobrevin-(1-96) in pET15b were as described previously (10). Mutations in the SNARE zero layers (syntaxin(Q226R), syntaxin(Q226L), SNAP-25(Q53A/Q174L), synaptobrevin(R56Q), and synaptobrevin(R56A)) were introduced by QuikChange site-directed mutagenesis (Stratagene) into the indicated plasmids. For expression in C. elegans, a Q227R mutation was similarly introduced into pTX12, an unc-64 syntaxin minigene expressed under the control of the unc-64 promoter (25).
An expression vector for NSF was created by amplifying full-length Chinese hamster NSF from pQE9-NSF (5) and inserting it as a BamHI-XhoI fragment into pET28a. The resulting protein has N-terminal His6 and T7 tags. Bovine
Protein Purification and Complex PreparationProteins were purified essentially as described (10, 30). NSF, syntaxin, SNAP-25, and synaptobrevin were quantified using Bradford reagent (Bio-Rad) with bovine serum albumin as a standard. A SNARE complex was assembled by combining syntaxin-CFP, SNAP-25, and synaptobrevin-YFP (8-10 µM final concentration of each); dialyzing overnight into 20 mM Tris (pH 7.4), 100 mM NaCl, and 1 mM dithiothreitol; and then separating the mixture on a Mono Q anion exchange column. Fractions containing the highest concentrations of SDS-resistant complex relative to unincorporated individual proteins were pooled, aliquoted, and stored as described above. At least three independent preparations of each complex were purified and studied. Quick-freeze Deep-etch Electron MicroscopySNARE complexes adsorbed to mica chips were replicated and viewed by transmission electron microscopy as described previously (10). Temperature-dependent Dissociation in SDSThe SNARE complex (30 µg) was brought to a final volume of 150 µlin1x Laemmli buffer (50 mM Tris (pH 6.8), 1% SDS, 10% glycerol, and 0.1% bromphenol blue). Aliquots (15 µl) were incubated at the indicated temperatures for 5 min, returned to room temperature, and loaded onto a 10% SDS-polyacrylamide gel. Proteins in the gel were stained with SYPRO Red and visualized and quantified using a STORM 860 imaging system (30). SNARE Complex Disassembly ReactionsDisassembly reactions were performed in 30 mM HEPES (pH 7.6), 100 mM potassium glutamate, 10 mM MgCl2, 2 mM ATP, and 1 mg/ml bovine serum albumin supplemented where indicated with an ATP-regenerating system of 1 mM creatine phosphate and 20 µg/ml creatine phosphokinase. Bovine serum albumin was omitted from disassembly reactions analyzed by gel electrophoresis. Unless indicated otherwise, all reactions were performed at 30 °C.
For FRET analysis, disassembly reactions were carried out in a final volume of 500 µl. Buffer, SNARE complex (100 nM unless indicated otherwise), and
For monitoring disassembly of SDS-resistant complexes by gel electrophoresis,
Data AnalysisAll scans were corrected for buffer background. Apparent FRET efficiency was calculated from corrected CFP emission (477 nm) as 1-(FDA/FD), where FDA is the measured CFP fluorescence of the complex at a given time and FD is the CFP fluorescence of the fully disassembled complex. The FRET signal measured for each complex was taken to represent 100% assembled complex, whereas that for the fully disassembled complex was set to 0%. The initial rate of complex disassembly was calculated from the slope of a line fit to the first 20 s of data collected after addition of NSF (data rejected if the line had R2 < 0.98), taking into account the amount of SNARE complex (in pmol) and NSF (in µg) in the reaction. Rate data for disassembly at different Growth and Culture of C. elegansC. elegans was grown at 22.5 °C on solid medium as described (31). Aldicarb (2-methyl-2-(methylthio)proprionaldehyde O-(methylcarbamoyl)oxime) was obtained from Chem Services, Inc. (West Chester, PA). The strains used in this study were wild-type N2, NM2707 (unc-64(js115), jsEx823 (pTX12(Q227R), pPD118.33)), NM2708 (unc-65(js115), jsEx822 (pTX12, pPD118.33)), NM2709 (unc-64(js115), jsEx824 (pTX12(Q227R), pPD118.33)), NM2710 (unc-64(js115), jsEx825 (pTX12(Q227R), pPD118.33)), NM204 (snt-1(md290)), NM467 (snb-1(md247)), NM464 (unc-64(md130)), NM979 (unc-64(js115)/bli-5(e518)), and NM318 (unc-64(e246)). Construction of Syntaxin(Q227R) Transgenic StrainsC. elegans strains were transformed using a standard microinjection protocol (32). Plasmid pPD118.33 (a gift of Andy Fire) expressing green fluorescent protein in the pharynx under the control of the myo-2 promoter was used as a cotransformation marker. Transgenic strains containing unc-64(js115) in the homozygous state were created by injecting unc-64(js115)/bli-5(e518) heterozygotes and screened for fluorescent transgenic animals that failed to segregate the bli-5 chromosome. Progeny of the resulting animals consisted only of green fluorescent protein-positive viable animals and green fluorescent protein-negative Unc-64 L1-arrested paralyzed animals. Three independent lines were analyzed for each transgene. ImmunoblottingC. elegans lysates were created as described previously (33). Blots were blocked for 1 h, incubated overnight with primary antibody at 4 °C, and developed using enhanced chemiluminescence and a STORM 860 imaging system. Antisera directed against UNC-64 syntaxin (antibody 939) (25), SNB-1 synaptobrevin/vesicle-associated membrane protein (antibody 1092) (26), and SNT-1 synaptotagmin (antibody 1095) (34) were used at 1:5000, 1:10,000, and 1:2000 dilutions, respectively.
C. elegans Behavioral AnalysisThrashing assays and aldicarb assays were performed as described previously (35, 36).
Real-time Assay of NSF-mediated SNARE Complex DisassemblyTo study the assembly and disassembly of SNARE complexes in vitro, we created a reporter system in which fluorescent proteins (enhanced CFP and YFP) are fused to the C termini of the cytoplasmic domains of rat syntaxin-1a and synaptobrevin II in place of the proteins' usual transmembrane domains (Fig. 1A). When the SNAREs assemble into a SNARE complex, they do so in a parallel orientation and thus bring the fluorescent protein tags close enough together for FRET between CFP and YFP. Advantages to using genetically fused fluorescent protein tags to follow SNARE complex dynamics are that (i) all SNAREs are uniformly tagged; (ii) the distance between the tags in assembled SNARE complexes is likely to be optimal for FRET; (iii) fusing fluorescent protein tags to SNARE proteins improves the yield of recombinant protein obtained from Escherichia coli; and (iv) identical tags can be fused to different SNARE proteins, making it possible to directly compare the in vitro behavior of SNARE complexes. Two early studies using blue fluorescent protein and YFP fused to syntaxin and synaptobrevin to test their relative orientation within a SNARE complex demonstrated that, in principle, this approach will work (37, 38).
To generate a tagged SNARE complex, we combined equimolar amounts of syntaxin-CFP, synaptobrevin-YFP, and non-fluorescent SNAP-25. Following overnight incubation, we separated the SNARE complex from unincorporated component proteins by ion exchange chromatography. The resulting complex contained the three SNAREs in an 1:1:1 molar ratio and was resistant to dissociation by SDS unless boiled (Fig. 1B), as is typical of the synaptic SNARE complex (39). To confirm that the complexes were properly assembled, we carried out quick-freeze deep-etch electron microscopy and looked at the morphology of individual particles (Fig. 1C). Similar to what we reported in a previous study of SNARE complexes tagged with maltose-binding protein (10), two protein tags (in this case, CFP or YFP, which appeared as 4-nm diameter balls) were present where expected on one end of each 12-14-nm rod-like SNARE complex.
We next compared the fluorescence emission spectra of an assembled SNARE complex (Fig. 2A, solid line), a SNARE complex disassembled by NSF/
To follow SNARE complex disassembly in real time, we monitored SNARE complex fluorescence as a function of time. Different amounts of NSF added to the SNARE complex (100 nM) in the presence of saturating concentrations of
Effect of a Two-arginine/Two-glutamine Zero Layer on NSF-mediated DisassemblyTo understand how NSF and
On the basis of the crystal structures of SNARE complexes (11, 12, 14) and molecular dynamics simulations of the effects of zero layer mutations on the structure of the synaptic SNARE complex (17), it is clear that the zero layer cannot accommodate two arginines without some distortion. Consistent with this, a previous study of zero layer mutations in the synaptic SNARE complex found that the syntaxin(Q226R) mutation decreased the apparent stability of the complex, with an 20 °C reduction in the melting temperature measured by circular dichroism and an 10 °C reduction in the temperature needed to dissociate the complex in 1% SDS (16). To confirm that the CFP/YFP-tagged complex was similarly affected by a syntaxin(Q226R) mutation, we incubated the wild-type or mutant complex in 1% SDS at varying temperatures prior to electrophoresis and measured the amount of remaining SDS-resistant complex (Fig. 3B). As expected, the complex containing syntaxin(Q226R)-CFP was half-dissociated at an 10 °C lower temperature compared with the wild-type complex. Because of the hysteresis observed in studies of SNARE unfolding and refolding (42), it is not clear whether this change in apparent stability reflects a change in the kinetics of complex dissociation or in the free energy of the complex itself, but the change confirms that a structural change has occurred.
On the basis of the previous study of synaptic SNARE complexes with zero layer mutations (16), we expected that changing the syntaxin glutamine to an arginine (Q226R), despite decreasing the apparent stability of the complex, would slow the rate at which NSF disassembles the complex. We again monitored complex disassembly using FRET between attached CFP and YFP tags. Surprisingly, FRET was completely lost within 10 min of addition of NSF just as for the wild-type complex (Fig. 4A). Kinetic analysis of the loss in FRET revealed that the complex containing syntaxin(Q226R) was disassembled with an initial rate of 17.5 ± 1.0 pmol of SNARE complex·µg of NSF-1·min-1 (n = 8) at 30 °C, which is statistically indistinguishable from the rate at which the wild-type complex was disassembled. The ability of NSF to disassemble the synaptic SNARE complex thus does not appear to require special interactions with the syntaxin zero layer glutamine.
Because of the discrepancy between these findings and the earlier work of Scales et al. (16), we carried out disassembly experiments using a gel-based assay of SDS-resistant complexes to follow the reaction (Fig. 5). We added NSF together with -SNAP and MgATP to either the wild-type or Q226R mutant SNARE complex and measured the SDS-resistant SNARE complex remaining at different times during the course of a disassembly reaction. To do this, we removed aliquots of the complex where indicated, mixed them into SDS-containing sample buffer, and separated them without boiling on an SDS-polyacrylamide gel (Fig. 5). Once again, the wild-type (three-glutamine/one-arginine zero layer) and mutant (two-glutamine/two-arginine zero layer) complexes were both efficiently disassembled, confirming that SNARE complex disassembly is unaffected by eliminating glutamine from the syntaxin zero layer.
Two-arginine Zero Layer Causes a Small Increase in [
Hydrophobic Repacking of the Zero Layer Does Not Affect DisassemblyIf the syntaxin zero layer glutamine is not essential for efficient SNARE complex disassembly, we wondered whether the presence of a polar layer near the center of the complex might nonetheless be important for the reaction. We therefore repacked the zero layer of the synaptic SNARE complex with non-polar residues and studied disassembly of the resulting complex. The SNARE complex containing syntaxin(Q226L)-CFP, SNAP-25(Q53A/Q174L), and synaptobrevin(R56A)-YFP had a fluorescence emission profile similar to that of the wild-type SNARE complex (Fig. 7A). FRET was once again completely lost following a 10-min incubation with NSF. The progress of this reaction was similar to that for the wild-type complex (Fig. 7B). Syntaxin Zero Layer Mutant Restores Function in a C. elegans Syntaxin-null StrainTo determine whether the three-glutamine/one-arginine composition of the zero layer is important for function of the synaptic SNARE complex in neurotransmitter release, we took advantage of the high degree of conservation between rat and C. elegans SNAREs (25, 26) and the ability to rescue mutant strains of C. elegans with appropriate transgenes. We investigated whether syntaxin (UNC-64) containing arginine in place of its usual zero layer glutamine (Q227R) rescues movement in a strain lacking UNC-64 syntaxin (25). Worms expressing comparable levels of wild-type or Q227R mutant UNC-64 from transgenes were generated (Fig. 8A). The overall movements of parental, wild-type, and mutant transgenic strains were indistinguishable from each other (Fig. 8B), showing that the overall function of the synaptic SNARE complex was restored by the UNC-64 syntaxin(Q227R) mutation. This implies that synaptic SNARE complexes containing two arginines can promote membrane fusion in vivo.
To look for more subtle impairment of neurotransmission in worms expressing this mutant syntaxin, we measured the sensitivity of various strains to the acetylcholinesterase inhibitor aldicarb. Mutant worms that release less acetylcholine than normal are typically resistant to aldicarb, whereas those that release more are hypersensitive (35, 44-46). Disruptive mutations of hydrophobic layer residues in the SNARE motifs of syntaxin (unc-64) and synaptobrevin (snb-1) have been shown previously to generate worms resistant to aldicarb, whereas a syntaxin mutation that is "open" and thus more readily incorporated into SNARE complexes creates worms with a hypersensitive phenotype (25, 26, 47). Eliminating tomosyn, a proposed negative regulator of SNARE function, also leads to hypersensitivity (46, 48). As expected, mutant syntaxin worms expressing wild-type UNC-64 responded to aldicarb similarly to the parental strain (N2), whereas known syntaxin-deficient worms were resistant (Fig. 8C). Surprisingly, mutant worms rescued with transgenic Q227R mutant UNC-64 were paralyzed sooner than those expressing wild-type syntaxin, indicating a hypersensitivity to aldicarb. Although the basis for this hypersensitivity merits further exploration, the fact that worms expressing the syntaxin zero layer mutant are not resistant to aldicarb confirms that synaptic SNARE complexes with a zero layer of two glutamines and two arginines are functional in C. elegans.
Although the SNARE complex conserved zero layer has attracted much attention, its actual function remains unknown. As part of an effort to understand how NSF disassembles SNARE complexes, we tested the hypothesis that polar zero layer residues and, in particular, the glutamine in the QA-SNARE syntaxin are important for efficient SNARE complex disassembly (11, 16). Surprisingly, we found that changing the composition of the zero layer had no significant effect on the rate at which synaptic SNARE complexes could be disassembled by NSF. Furthermore, syntaxin containing arginine instead of glutamine in its zero layer position rescued viability and movement in a C. elegans syntaxin-null strain, demonstrating in a living animal that the zero layer of this complex is more tolerant to change than are some of the surrounding hydrophobic layers (25, 26). Together with previous studies, our findings suggest that the true function(s) of the zero layer remain to be discovered. Based on the literature and our in vivo findings, it seems likely that the importance of the zero layer will vary from complex to complex. The lack of involvement of the zero layer in NSF-mediated disassembly draws attention to other features of the SNARE complex that NSF might utilize in initiating its disassembly reaction, as discussed further below. Where did the idea that disassembly depends on polar residues in the core of the zero layer come from? It was first proposed as a possible explanation for the layer's high degree of conservation and for the seemingly unique sequestration of the layer's polar residues from surrounding solvent (11). It re-emerged in efforts to explain the weak effects of zero layer mutations in SNAP-25 SNARE motifs on exocytosis (22, 23, 28, 29). Scales et al. (16) further developed the hypothesis in a study examining the effects of zero layer mutations on features of the SNARE complex cycle not directly linked to membrane fusion, including overall stability and NSF-mediated disassembly. Like us, they found that changes in the zero layer reduced the apparent stability of the synaptic SNARE complex. However, their primary conclusion that changes in the zero layer and especially in the glutamine of syntaxin severely impair NSF-mediated SNARE complex disassembly differs from our results. We found that SNARE complexes containing arginine instead of glutamine in the syntaxin zero layer position were readily disassembled under a variety of assay conditions using two distinct reporter systems. Furthermore, we were able to show that syntaxin with this potentially perturbative zero layer mutation remained functional in living worms. This latter result is consistent with the relatively benign effects previously associated with mutations of SNAP-25 zero layer residues in semi-intact and intact cell systems (22, 23, 28, 29) and seems to be inconsistent with a major change in the ability of NSF to disassemble SNARE complexes with mutant zero layers.
Although there are a number of minor differences in the recombinant proteins and assays used here versus those used by Scales et al. (16), none clearly explain the different results obtained. One way in which changes in the SNARE complex can inhibit NSF-mediated disassembly is to decrease
Given the high degree of conservation of the zero layer and the common ability of NSF/ -SNAP to disassemble all SNARE complexes, it seems likely that any essential role for residues of the zero layer in NSF-driven disassembly would apply to more than just the synaptic SNARE complex. Studies examining the effects of zero layer mutations in other SNARE complexes have not precisely addressed this question, but they are at the least inconsistent with an obligate role for the QA glutamine in ongoing complex function. In particular, whereas yeast exocytic and endoplasmic reticulum/Golgi complexes containing two-glutamine/two-arginine zero layers were found to be seriously impaired or nonfunctional in vivo, their function could be restored by replacing the arginine in the original R-SNARE with glutamine to create a rotated three-glutamine/one-arginine layer (17-19). Because none of the SNARE complexes so far studied in yeast have the convenient property of resisting dissociation by SDS, the precise quantitation of the steady-state levels of the SNARE complex will require the development of better methodology. If the zero layer is not conserved to facilitate disassembly of complexes by NSF, what role(s) does it play? Among the more obvious possibilities that have been considered are that (a) it helps SNAREs assemble with each other in the proper register and orientation to avoid off-pathway assembly intermediates; (b) it contributes to establishing the desired (four-helix) oligomeric state; and (c) it provides an intermediate "stopping point" at the stage at which complexes are half-way zippered up between membranes (partially assembled "trans-complexes"). This latter role would not be obvious in studies of solubilized SNAREs because half-assembled SNARE complexes are stable only when anchored in two membranes. Buried polar residues are known from studies of other coiled-coil systems to affect assembly kinetics as well as the orientation and oligomeric state of the resulting complexes, making all of these reasonable possibilities. Which of these or other roles the zero layer plays will require systematic study of SNARE complexes in which the zero layer polar residues are replaced with structurally appropriate hydrophobic residues.
Our finding that worms expressing the zero layer mutant syntaxin(Q227R) are hypersensitive to aldicarb provides evidence for a previously unappreciated role for the syntaxin zero layer glutamine in negatively regulating syntaxin function. Further studies will be needed to establish what this is, but three possibilities are that (a) the Q227R mutation could affect the ratio between open and "closed" syntaxin, thus promoting SNARE complex assembly; (b) a decrease in affinity for
If NSF and
* This work was supported by grants from the National Institutes of Health (to P. I. H. and M. L. N.) and by a W. M. Keck Foundation distinguished young scholar award, a Searle scholar award, and the Andrew and Virginia Craig Faculty Research Fund (to P. I. H.). The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. 1 To whom correspondence should be addressed: Dept. of Cell Biology and Physiology, Washington University School of Medicine, 660 S. Euclid, Campus Box 8228, St. Louis, MO 63110. Tel.: 314-747-4233; Fax: 314-362-7463; E-mail: phanson{at}cellbiology.wustl.edu.
2 The abbreviations used are: SNAREs, soluble NSF attachment protein receptors; NSF, N-ethylmaleimide-sensitive factor;
We thank Teresa Naismith for help with site-directed mutagenesis and making the pET28a-NSF expression construct, Tim Mahoney for introducing the Q226R mutation into syntaxin-CFP, Liping Wei and Rose Vincent for construction of transgenic C. elegans strains, Robyn Roth and John Heuser for help with deep-etch electron microscopy, and members of the Hanson laboratory for helpful discussions.
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